>input_sequence_64968
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-------------------------------ATGGCGCAGCCGGAGGCCCTCTCGCTCGCGGGCCGGCGGGTGGCGTTCA
CGACGCCTCAGACCACAGGCGGGGACGGCGGGGAAGGATACGGCGGCCGGCTTGGCGCGCTGCTGCGGCAGCGCGGTGCG
CACCCGCTCCCCGTGCCTACCATTGCCATCCGCGCCCACGAGCCCGACCGCCTCCGCCCCTACCTCCTGCCCGGCGCTCT
CGACCCCTTCGCGGCGCTCGCCTTCACATCCCGCTCCGGCATCGCCGCCTTCTCCCGCGCCCTCCCCTCCTCCTCCTCCT
CCGCCCAGCTTCCCCTCTCCGACGCCGCCTCCGCGCTCCCCTTCACCGTGGCGGCACTCGGCAGCGACGCCGACCTCCTG
GACGGCGCCTTCCTTGCCAGGCTCTGCCGCGACGCCGGGAGGGTGGCCGTCCTCGTCCCGGACGTCCCCACCCCCGCCGG
CCTCGTGGAGGCGCTGGGGCGCGGGTCCGGCCGCCGCGTGCTCTGCCCTGTCCCCGACGTCGACGGGCTCCGCGAGCCGC
CCGTCGTGCCCGACTTCCTCGCCCGGCTCAACGCGGCCGGGTGGACGGCCATGCGCGCGCCGGCGTACACCACGTGCTGG
GCCGGCCCGGGCTGCGCCGAGCGGCTGGTGGCCCCGGACGCCGCCGCGCCCGACGCCATCGTGTTCACCAGCTCGGCCGA
GGTGGAGGGGCTGCTCAAGGGGTTGGACGCCGCCGGGTGGAGCTGGCCGCGGCTCAGGGCGCGCTGGCCGGACATGGTCG
TGGCCGCGCATGGGCCGGTCACCGCCGAGGGCGTCAGGAGGCTCGGCATTGAGGTCGACGTCGTGAGCTCGAGGTTTAGC
AGCTTCCATGGGGTTCTTGATGCTCTCGCTGCAACATTTTGCTCTCAACAATTTAAAATTAGCTCCAGGTTTAGTGCTGG
TTCACATTGA----------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G271300
TTTGTTACGATTGTATTGTGCATATTTCTGCCTGCTCTCAGTTTAATACAGCATGTTAGCAATGCAAGTAGCCAGGCAGA
ATTGGTTTTGTTCTGTTTCTCTTTTCTAGTAGCTTACAGGAGTTAAATAATAAAATTGAATAAGAACTTTCAGCCTTTTG
AATATGCTGAAAACTGGCAGCCACTGTTGTCGCCACCTTCCTTGTTCCATGTAAACATCCTTCGAAACTGCTCATGGACT
TTTAAACACTACCGGGTCGACGAGGTTTTGTTGCAAAAGGAAACTCGCATGTCGATCAATGTCTCAGTGTCGAATACTGT
GATGAGCTGATGATGATGCACAAATTTGGCATAGACCTACTTGACCGTCCTCTGCACTCTTATTGCAGGCGATGTCGTCG
TGCATATATTCCTTCCCCCGCAGCGGGAATTCTACAACCTGGAGGAGTTCTACGGCAACGCCACCCCCATCGAACTCCCT
TTCGAGACCCAGCTGCAGTAATCGCCGCTCGA-----ATCTTGGCATTGGAGCCAAACGAGGACGTTCACTCAAAGA---
-------------------------------------------CCTGCAGATAGATAGATAGCTTGGTCGCACAGCT---
--GGACAGTGATGCCGAGTGACTACTCTCCTGAAGTATGTGAAATTGGCGCCATCATGCAAACATTCTTGTAATCTGTTG
TTATACCATGTGTATCATTGTAGCAACTACGCAGTACGCACTATTGAACAATGTTTAACAGCAAGAGGAATAGAGTTCAG
AAAGATTGGCGGTAGATTGTTGAATTCACAGTGCTGGAAAATTTCC------AGTTTTGATCTTGTCTGCTGACATCCAC
TTACCAGCCTACTGTATTTT-CTTCGACGTTGCCTGAATTA-------TTCTGACGGTCAGCAGTGTTCACTGCAATT-C
TGAACTCTGAACTGTACTACTAGCAAAAGACAGTTCGAAGTGCACGTAAGAAGAGTCACCGGAGAGATATCCTTCAGATT
CAGATAGATTGGCGTCGCCGGAGGAGCGGTGATGGCGCAGCCGGAGGCCCTCTCGCTCGCGGGCCGGCGGGTGGCGTTCA
CGACGCCTCAGACCACAGGCGGGGACGGCGGGGAAGGATACGGCGGCCGGCTTGGCGCGCTGCTGCGGCAGCGCGGTGCG
CACCCGCTCCCCGTGCCTACCATTGCCATCCGCGCCCACGAGCCCGACCGCCTCCGCCCCTACCTCCTGCCCGGCGCTCT
CGACCCCTTCGCGGCGCTCGCCTTCACATCCCGCTCCGGCATCGCCGCCTTCTCCCGCGCCCTCCCCTCCTCCTCCTCCT
CCGCCCAGCTTCCCCTCTCCGACGCCGCCTCCGCGCTCCCCTTCACCGTGGCGGCACTCGGCAGCGACGCCGACCTCCTG
GACGGCGCCTTCCTTGCCAGGCTCTGCCGCGACGCCGGGAGGGTGGCCGTCCTCGTCCCGGACGTCCCCACCCCCGCCGG
CCTCGTGGAGGCGCTGGGGCGCGGGTCCGGCCGCCGCGTGCTCTGCCCTGTCCCCGACGTCGACGGGCTCCGCGAGCCGC
CCGTCGTGCCCGACTTCCTCGCCCGGCTCAACGCGGCCGGGTGGACGGCCATGCGCGCGCCGGCGTACACCACGTGCTGG
GCCGGCCCGGGCTGCGCCGAGCGGCTGGTGGCCCCGGACGCCGCCGCGCCCGACGCCATCGTGTTCACCAGCTCGGCCGA
GGTGGAGGGGCTGCTCAAGGGGTTGGACGCCGCCGGGTGGAGCTGGCCGCGGCTCAGGGCGCGCTGGCCGGACATGGTCG
TGGCCGCGCATGGGCCGGTCACCGCCGAGGGCGTCAGGAGGCTCGGCATTGAGGTCGACGTCGTGAGCTCGAGGTTTAGC
AGCTTCCATGGGGTTCTTGATGCTCTCGCTGCAACATTTTGCTCTCAACAATTTAAAATTAGCTCCAGGTTTAGTGCTGG
TTCACATTGATATGATAGGCGAATTTTTTGATGTAAACTTTCTTTCTTCGAGTCACAAATTGTCAGCCTGATGGAATGAA
CAAAAATATTCAGTCAGCAAACTCATTGCTATTCCACACCAACCTGTCACCTAGATATCTCCAGAATGTACTGTAAATCT
GCATTCTACCAACCAAGCTTTTTACCTGTTAATAACTGCGATCACAGAAATGGGGTGGTGAACCATTCTTGATCTTCCTC
CTCTAGAACGTTCCTTGACGTGCTTATATGAGAAGCTGGATTTGCAACAAATCTCAGCTTCACCACTTCCAGTTCGAGAC
AATGGTGAGCTCAGCCAAGGGCAAAGTGTGTGTAACTGGGGCCTCAGGCTTTCTCGCCTCTTGGCTCATCAAGAGACTTC
TTGAGTGTGGATATCATGTGATAGGGACAGTCAGAGATCCAGGTAT-TCCTTTCTAGCATCCCTCTTGATGACATTATTT
ATCGTACATACCTGCAAGCAAATGAACTATGGTTTGAACTGTGTATTTGGAATTTGGCAGGGAATCGGAAAAAAGTTGGA
CACCTTTGGAAATTACCTGGTGCAAATGAGAGGCTCCAACTTGTGAGAGCTGATTTATTGGAGGAAGGGAGCTTTGATGA
TGCTGTGATGGCTTGTGAGGGTGTCTTCCACATTGCATCACCTGTCCTTGGAAAATCTGATTCCAATTGCAAGGCATGCT
GCATTTGCTTCAAACCCTCAATC-TATTATTATTACCATGCCATGTACTTGAATATGCTATTTATGTTACAGGAAGCAAC
ACTTGGTCCTGCAATTAATGGTACCCTAAATGTGCTAAGGTCGTGCAAGAAGAGTCCGTTTCTAAAACGGGTTGTTCTCA
CATCTTCATCGTCCGCGGTGAGGATTAGGGACGAAACCCAGCAGCCAGAACTGTTGTGGGATGAAACAACGTGGAGCTCT
GTGCCACTCTGCGAAAAGCTACAGGTAATACAGAACTGTACTCCAGATTACA
>chr5B_1
TTTGTTACGATTGTATTGTGCATATTTCTGCCTACTCTCAGTTTAATACAGCACGCTAGCAATGCAAGTAGCCA------
--------------GTTTCTCTTTTCTAGTAACTTAAAGAAGTTAAAAGATAAAATTGAATAGGAACTTCCAGCCTTTTG
AATATGCTGAAAACTTGCCGCCACTGTTGTCGCTACCTTCCTTGCTCCATGTAAACATCCTTCCCAACTGCTCATGGCCT
TTTAGACACTATCGGTTTAACGAGGTTCTGTTGCGAAAAGAAACTCGCCTGGCGATCATTGTCTCAGTGTGGAATGCTAT
GATGAACTGATGATGCTGCACAATTTTGCCATGGACCTAGTTGACCGTCCGCTGCACTCTTATTGCAGGCGATGTCGTCG
TGCATATATTTCTTCCCCCGCAGCGGGAGTTCTACAACCTGGAAGAGTTCTACGGCAACGCCACTCCCATCGAACTCCCT
TTCGAGACCCAGCTGCAGTAACTACCGCTCGA-----ATCTTGGCATTGGAGCCAAACGAGGACGGTCACTCAAAGA---
-------------------------------------------CCCGCAGGTAGATAGATAGCTTGGTCGCACAGCTGGA
CAGGACAGTGATGCCGGGTGACCACTCTCCTGAAGTATGCGAAATTGGCGCCGTCATGCAAACATTCTTGTAATCTGTTG
TTATACCATGTGTATCATTGTAGCAACTAA-------GCACCATTGAACAATGT-TAACAGCAAGAGGAATAGAATCCAG
AAAGATTGGTGGTAGATTGTTGAATTCACAGTGCTGGAAATTTTCTACTACTGGTTTTGATCTTGTCTGCTGACATC---
-TACCAGCCTACAATATTTTTCTTCCACGTTGTCTGAACTA-------TTCTGACGGTCAGTGGCGTTCACTGTTATT-C
TGAACTCTGAACTGCACTACTAGCAAAAGACAGTT-GAAGTGCGCGTAAGAAGAGACACTGGAGAGATATCCTTCAGATT
CAGATAGATTGGCGTCGCCGGAGGAGTGGTAATGGCGCAGCCGGAGGGCCTCTCGCTCGCGGGCCGGCGGGTGGCGTTCA
CGACGCCGCAGACCACCGGCGGGGGCGGCGGGGAAGGATACGGCGGCCGGCTTGGCGCGCTGCTGCGGCAGCGCGGCGCG
CACCCGCTCCCCGTGCCCACCATCGCCATCCGCGCCCACGAGCCCGACCGCATCCGCCCCTACCTCCTGCCCGGCGCCCT
CGACCCCTTCGCGGCGCTCGCCTTCACGTCTCGCTCCGGCATCGCCGCCTTCTCCCGCGCCCTCCCCTCCTCCTCCTCCT
CCACCCAGCTTCCCCTCTCCGACGCCGCATCCGCGCTCCCCTTCACTGTGGCGGCACTGGGGAGCCACGCCGACCTCCTG
GACGGCGCGTTCCTCGCCAGGCTCTGCCGCGACGCCGGGAGGGTGGCCGTCCTCGTCCCGGACGTCCCCACCCCCGCCGG
CCTCGTGGAGGCGCTGGGGCGCGGGTCCGGCCGCCGCGTGCTCTGCCTCGTCCCCGAGGTCGATGGCCTCCGCGAGCCGC
CCGTCGTGCCCGACTTCCTCGCCCGGCTCGACGCGGCCGGGTGGGCGGCCGTGCGCGCGCCGGCGTACACCACGTGCTGG
ACCGGCCCGGGCTGCGCCGAGAGGCTGCTGGCCCCGGACGCCGCCGCGCCCGACGCTATCGTGTTCACCAGCTCGGCGGA
GGTCGAGGGGCTGCTCAAGGGGCTGGACGCCGCGGGGTGGAGCTGGCCGCGGCTCAGGGCGCGGTGGCCCGACATGGTCG
TGGCTGCGCATGGGCCAGTCACCGCCGAGGGCGTCAGGAGGCTCGGCATTGAGGTGGACGTCGTGAGCTCGAGGTTTAGC
AGCTTCCATGGGGTTCTTGATGCTCTCGCTGCAACATTTTGTTCTCAACAATTGAAAATTAGCTCCAGGTTTAGTGCTGG
TTCACATTGAAA------------TTTTTTATGTAAACATTCTTTCTTCGAGTCACAAGTTATCAGCCTGATGGAATGAA
CAAAAATATTCAGTCAGCAAACTCATTGCTATTCCACACCAACCTGTCACCTAGATATCTTCAGAATGTGCTGTAAATCT
GCATTCTACCAACCAAGCTTTGTACCTGTTAATAACTGTGATCACAAAAATGGGGTGATGAACCATTCTTGATCCTCCTC
CTCTAGAATGTTCTTTGACGTGCTTATATGAGAAGCTGGATTTGCATCAAATCTCAGCTTCACCACTTCCAGTTCGAGAG
AATGGTGAGCTCAACCAAGGGCAAAGTGTGTGTAACTGGGGCCTCAGGCTTTCTCGCCTCTTGGCTCATCAAAAGGCTTC
TCGAGTGTGGATATCATGTGATAGGGACAGTCAGAGACCCAGGT-AATCCTTTGTAGCATTCCTCTTGATGGCATCA-TT
ATCGTATATATCTGCAAGCAAATGAACTGAATTTTTGTGGATTTCTGTGAC--TTGGCAGGGAATCGAAAAAAAGTGGGA
CACCTTTGGAAACTGCCTGGTGCAAATGAGAGGCTCCAACTTGTGAGAGCTGATTTATTGGAGGAAGGGAGCTTTGACGA
TGCTGTGATGGCTTGTGAGGGCGTCTTCCACATCGCATCGCCTGTCCTCGGGAAATCCGACTCCAATTGCAAGGTATGCT
GCATTTGCTTCAAGCACCCGACTGTATTATCATTACCATGGCATGTGCCTGAATATGCTATTCATGTTGCAGGAAGCAAC
ACTTGGTCCTGCAATTAATGGTACCCTAAACGTGCTAAGGTCGTGCAAGAAGAGTCCGTTTCTCAAAAGGGTTGTTCTCA
CATCTTCATCGTCCGCGGTGAGGATTAGGGACGAAACTCAGCAGCCAGAACTGTTGTGGGATGAAACAACGTGGAGCTCT
GTGCCACTCTGCGAAAAGCTACAGGTAATGCGGAAC----------------
>chr5D_1
TTTGTTACGATTG-ATTGTGCATATTTCTGCCTGCTCTCAGTTTAATACAGCATGTTAGCAGTGCAAGTAGGCAGGCAGA
ATTGGTTTTGTTCCGCTTCTCTTTTCTAGTAACTTAAATAAGTTAAAAGATAAAATTGAATAGGAACTTCCAGCCTTTTG
AATATGCTGAAAACTGCCAGCCACTGATGTC-------------------------------------------------
------------------------------------------ACTCACCTGAGGATCAATGTTTCAGTGTCGAATTCTAC
GATGAAC--------------AAATTTGCCGTAGACCTACTTGACCCTTCTCTGCACTCTTAATGCAGGTGATGTCGTCG
TCCATATATTTCTTCCCCCGCAGCGGGAATTCTACAACCTGGAGGAGTTCTACGGCAACGCCACCCCCATCGAACTCCCT
TTCGAGACCCAGTTGCAGTAACCACCGCTTACATTGCATCTTCGCAGTCGAGCCAAACGAGGACATCATTCACTTCATCG
CCCCAACCAACAACATTCCATGATGCTCAGATGCGGAGAGCTGCCCGCAGATAGATAGATAGCTTGGTCGCACAGCTGGA
CAG-----TGATGCTGGGTGACTACTCTCCTGAAGTATGTGAAATTGGCGCCATCATGCAAACATTCTTGTTATCTGTTG
TTATACCATGTGTATCATTGTAGCAACC-------ACGCACTATTGAACAATGT-TAACAGCAAGAGGAATAGAATCCAG
AAAGATTGGTGGTAGATTGTTGAATTCACAGTGCTGGAAATTTC------CTAGTTCTGATCTTGTCTGCTGGCATCTA-
TTACCAGCCTACTGTATTTTTCTTCGACGTTGTCTGAACTATTCTGAGTTCTGACGGTCAGTGGTGTTCACTGTTATTTC
TCAACTCTGAACTG---TACTAGCAAAAGACAGTT-GAGACACTG--------------------GATATCCTTCAGATT
CAGATAGA-----------------GTGGTAATGGCGCAGCCGGAGGGCCTCTCGCTCGCGGGCCGGCGGGTGGCGTTCA
CGACGCCTCAGACCACCGGCGGGGGCGGCGGGGAAGGATACGGTGGCCGGCTTGGCGCGCTGCTGCGGCAGCGCGGCGCG
CACCCGCTCCCCGTGCCCACCATCGCCATCCGCGCCCACGAGCCCGACCGCCTCCGCCCCTACCTCCTGCCCGGCGCCCT
CGACCCCTTCACGGCGCTCGCCTTCACCTCCCGCTCCGGCATCGCCGCCTTCTCCCGCGCCCTCCCCTCCTCCTCCTCC-
--GCCCAGCTTCCCCTCTCCGACGCCGCGTCGGCGCTCCCCTTCACCGTCGCCGCACTCGGCAGCGACGCCGACCTTCTG
GACGGCGCCTTCCTCGCCAGGCTCTGCCGCGACGCCGGGAGGCTGGCCGTCCTCGTCCCGGACGTCCCCACCCCCGCCGG
CCTCGTGGAGGCGCTGGGGCGCGGGTCCGGCCGCCGCGTGCTCTGCCCCGTCCCCGACGTCGACGGCCTCCGCGAGCCGC
CCGTCGTGCCCGACTTCCTCGCCCGGCTCGACGCGGCCGGCTGGGCGGCCGTGCGCGCTCCGGCGTACACCACGTGCTGG
GTCGGCCCGGGCTGCGCCGAGCGGCTGGTGGCCCCGGACGCCACCGCGCCCGACGCCATCGTTTTCACCAGCTCGGCGGA
GGTCGAGGGGCTGCTCAAGGGGCTGGACGCCGCGGGCTGGAGCTGGCCCCGGCTCAGGGCGCGATGGCCCGACATGGTCG
TGGCCGTTCATGGGCCGGTCACGGCCGACGGCGTCAGGAGGCTCGGCATTGAGGTGGACGTCGTGAGCTCGAGGTTTAGC
AGCTTCCATGGGGTTCTTGATGCTCTAGCTGCAACATTTTGTTCTCAACAATTGAAAATTAGCTCCAGGTTTAGTGCTGG
TTCACATTGAAA------------ATTTTGATGTAAACTTTCTTTCTTCGAGTCACAAGTTATCAGCCTGATGGAATGAA
CAAAAATATA-AGTCAGCAAACTCAATGCTATTCCACACCAACCTGTCACCTAGATATCTTCAGAATGTACTGTAAATCT
GCATTCTACCAACCCAGCTTTGTACCTGTTAATAACTGTGATCACAAAAATGGGGTGATGAACCATTCTTGATCCTCCTC
CTCTAGAATGTTCTTTGACGTGCTTATATGAGAAGCTGGATTTGCATCAAATCTCAGCTTCACCACTTCCAGTTCGAGAG
AATGGTGAGCTCAACCAAGGGCAAAGTGTGTGTAACCGGGGCCTCAGGCTTTCTCGCCTCTTGGCTCATCAAAAGACTTC
TTGAGTGTGGATATCATGTGATAGGGACAGTCAGAGACCCAGGTAAATCCTTTGTAGCATTCCTCTTGATGACATTA-TT
ATCGTACATATCTGCAAGCAAATGAACTATGGTTTGAACTGTGTATTTGGAATTTGGCAGGGAATCGGAAAAAAGTTGGA
CACCTTTGGAAATTACCTGGTGCAAATGAGAGGCTCCAACTTGTGAGAGCTGATTTATTGGAGGAAGGGAGCTTTGATGA
TGCTGTGATGGCTTGTGAGGGTGTCTTCCACATTGCATCACCTGTCCTCGGGAAATCTGACTCCAATTGCAAGGCATGCT
GCATTTGCTTCCAGCACTCGCTC-TATTATCATTACCATGCCATGTACCTGAATATGATATTCATTTCGCAGGAAGCAAC
ACTTGGTCCTGCAATTAATGGCACCCTAAACGTGCTAAGGTCGTGCAAGAAGAGTCCGTTTCTAAAACGGGTTGTTCTCA
CATCTTCATCGTCTGCAGTGAGGATTAGGGACGAAACCCAGCAGCCAGAACTGTTGTGGGATGAAACAACGTGGAGCTGT
GTGCCACTCTGCGAAAAGCTACAGGTAATACGGAAC----------------
>SNPs
--------------------------------------------------------------------------------
-------------S-----------------S----S--S-------SS-------------S------S----------
---------------------------------S----------S------------------SS------------S--
----S------S---S-SS--------S------S---S---------S--S-----------------------S--S-
-----S---------S------------S---------------------------------------------------
----------S---------------------------------------------------------------------
---------------------S-S--------------------------------------------------------
---------------------------------------------S----------------------------------
----------------S---------------------------------------------------------------
-----------------------------SSSSSS-------------------S-------------------S-S---
---------S------------------------------S----S-------------------------------S-S
--------------------------------S-----S----------------------SS----------SS-----
--------------S--------------------S-------S-----------S---S--------------------
--------------------------S---S----------------S--------------------------------
----------------S-------S---------------------------------------------------S---
-----------------S-----S-----------------------------------------------------S--
---------------------------S----------------------------------------------------
----------------------------S---------------------------------------------------
--------------S-----------------------------------------------------------------
------------------------------------------------S-----------------S-------------
-----------------------------S--------------S-----S-----------------------------
-----------------------------------------------------------------------------S--
---S------------------S----------S-----------------------------S-----S----------
-------------------------------------------------------S------------------------
-----------------------------------------S-----------S--------------------------
----------S-SSSSSSSSSSSS----------------------------------S--S------------------
------------------------------------------------------------S-------------------
---------------------S----------------S-------S----------S----------------S-----
--------S----S--------------------------------S--------------------------------S
-------------S----------------------------------------------------------S-------
-------------------------------------S-------S-------S------S----------------S--
----------S---------------------------------------------------------------------
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------------------------------------------------S--S--------S-------------------
-------------S-S---S----------S-----------------S-------------S-----S-----------
------------------------------S-------------------------------------------------
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-------------------------------S----SSSSSSSSSSSSSSSS
>forward_502
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--CGAGACCCAGCTGCAGTAAT----------------------------------------------------------
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>reverse_2320
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-------------------------------------------------------------------------------C
AATGGTGAGCTCAGCCAAG-------------------------------------------------------------
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