Multiple sequence alignment - TraesCS5A01G251300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G251300 chr5A 100.000 2610 0 0 1 2610 467060667 467058058 0.000000e+00 4820
1 TraesCS5A01G251300 chr5A 88.329 814 85 8 1803 2610 501353189 501353998 0.000000e+00 968
2 TraesCS5A01G251300 chr5A 88.043 828 80 15 1793 2610 296307058 296306240 0.000000e+00 963
3 TraesCS5A01G251300 chr5A 94.942 257 12 1 1 257 648618695 648618950 4.050000e-108 401
4 TraesCS5A01G251300 chr5B 88.812 1296 107 18 349 1616 431879537 431878252 0.000000e+00 1555
5 TraesCS5A01G251300 chr5D 89.455 1138 91 19 677 1798 365441758 365440634 0.000000e+00 1410
6 TraesCS5A01G251300 chr3A 90.582 807 62 11 1813 2610 742378353 742377552 0.000000e+00 1057
7 TraesCS5A01G251300 chr1A 89.189 814 74 7 1803 2610 91498609 91497804 0.000000e+00 1003
8 TraesCS5A01G251300 chr4A 89.080 815 72 12 1803 2610 497009161 497009965 0.000000e+00 996
9 TraesCS5A01G251300 chr4A 95.331 257 11 1 1 257 19030469 19030214 8.700000e-110 407
10 TraesCS5A01G251300 chr4A 95.331 257 11 1 1 257 604649947 604650202 8.700000e-110 407
11 TraesCS5A01G251300 chr2D 88.943 814 77 11 1803 2609 119369984 119370791 0.000000e+00 992
12 TraesCS5A01G251300 chr3D 88.698 814 76 15 1807 2610 545336614 545335807 0.000000e+00 979
13 TraesCS5A01G251300 chr3D 88.494 817 76 16 1803 2610 182342764 182343571 0.000000e+00 972
14 TraesCS5A01G251300 chr1D 88.645 819 73 14 1802 2610 202315478 202314670 0.000000e+00 979
15 TraesCS5A01G251300 chr6A 95.437 263 10 2 1 262 399254758 399255019 4.020000e-113 418
16 TraesCS5A01G251300 chr7A 95.331 257 11 1 1 257 64091776 64092031 8.700000e-110 407
17 TraesCS5A01G251300 chr7A 94.942 257 12 1 1 257 693851846 693852101 4.050000e-108 401
18 TraesCS5A01G251300 chr2A 94.636 261 13 1 2 262 122047200 122046941 1.120000e-108 403
19 TraesCS5A01G251300 chr2A 94.942 257 12 1 1 257 686666065 686666320 4.050000e-108 401
20 TraesCS5A01G251300 chrUn 94.595 259 13 1 1 259 74706359 74706102 1.460000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G251300 chr5A 467058058 467060667 2609 True 4820 4820 100.000 1 2610 1 chr5A.!!$R2 2609
1 TraesCS5A01G251300 chr5A 501353189 501353998 809 False 968 968 88.329 1803 2610 1 chr5A.!!$F1 807
2 TraesCS5A01G251300 chr5A 296306240 296307058 818 True 963 963 88.043 1793 2610 1 chr5A.!!$R1 817
3 TraesCS5A01G251300 chr5B 431878252 431879537 1285 True 1555 1555 88.812 349 1616 1 chr5B.!!$R1 1267
4 TraesCS5A01G251300 chr5D 365440634 365441758 1124 True 1410 1410 89.455 677 1798 1 chr5D.!!$R1 1121
5 TraesCS5A01G251300 chr3A 742377552 742378353 801 True 1057 1057 90.582 1813 2610 1 chr3A.!!$R1 797
6 TraesCS5A01G251300 chr1A 91497804 91498609 805 True 1003 1003 89.189 1803 2610 1 chr1A.!!$R1 807
7 TraesCS5A01G251300 chr4A 497009161 497009965 804 False 996 996 89.080 1803 2610 1 chr4A.!!$F1 807
8 TraesCS5A01G251300 chr2D 119369984 119370791 807 False 992 992 88.943 1803 2609 1 chr2D.!!$F1 806
9 TraesCS5A01G251300 chr3D 545335807 545336614 807 True 979 979 88.698 1807 2610 1 chr3D.!!$R1 803
10 TraesCS5A01G251300 chr3D 182342764 182343571 807 False 972 972 88.494 1803 2610 1 chr3D.!!$F1 807
11 TraesCS5A01G251300 chr1D 202314670 202315478 808 True 979 979 88.645 1802 2610 1 chr1D.!!$R1 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.035056 CATTTGGGAAGAGGCGAGGT 60.035 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1808 0.032615 AGAGATCAGAGCGGTTCCCT 60.033 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.836076 CCTGATAACTTGCATACAAATATCATG 57.164 33.333 11.47 7.56 40.38 3.07
27 28 9.836076 CTGATAACTTGCATACAAATATCATGG 57.164 33.333 11.47 2.56 40.38 3.66
28 29 9.353431 TGATAACTTGCATACAAATATCATGGT 57.647 29.630 8.66 0.00 38.48 3.55
32 33 8.752005 ACTTGCATACAAATATCATGGTAACT 57.248 30.769 0.00 0.00 34.74 2.24
33 34 9.189156 ACTTGCATACAAATATCATGGTAACTT 57.811 29.630 0.00 0.00 34.74 2.66
36 37 9.407380 TGCATACAAATATCATGGTAACTTTCT 57.593 29.630 0.00 0.00 37.61 2.52
37 38 9.884465 GCATACAAATATCATGGTAACTTTCTC 57.116 33.333 0.00 0.00 37.61 2.87
40 41 8.511604 ACAAATATCATGGTAACTTTCTCCTG 57.488 34.615 0.00 0.00 37.61 3.86
41 42 8.328758 ACAAATATCATGGTAACTTTCTCCTGA 58.671 33.333 0.00 0.00 37.61 3.86
42 43 8.834465 CAAATATCATGGTAACTTTCTCCTGAG 58.166 37.037 0.00 0.00 37.61 3.35
43 44 7.921041 ATATCATGGTAACTTTCTCCTGAGA 57.079 36.000 0.00 0.00 34.20 3.27
44 45 6.627087 ATCATGGTAACTTTCTCCTGAGAA 57.373 37.500 5.50 5.50 44.94 2.87
45 46 6.042638 TCATGGTAACTTTCTCCTGAGAAG 57.957 41.667 9.37 7.10 46.80 2.85
46 47 5.780282 TCATGGTAACTTTCTCCTGAGAAGA 59.220 40.000 9.37 0.00 46.80 2.87
47 48 6.270000 TCATGGTAACTTTCTCCTGAGAAGAA 59.730 38.462 9.37 0.00 46.80 2.52
48 49 6.494666 TGGTAACTTTCTCCTGAGAAGAAA 57.505 37.500 9.37 0.00 46.80 2.52
49 50 7.079451 TGGTAACTTTCTCCTGAGAAGAAAT 57.921 36.000 9.37 2.05 46.80 2.17
50 51 7.162082 TGGTAACTTTCTCCTGAGAAGAAATC 58.838 38.462 9.37 3.38 46.80 2.17
51 52 7.162082 GGTAACTTTCTCCTGAGAAGAAATCA 58.838 38.462 9.37 0.00 46.80 2.57
52 53 7.826744 GGTAACTTTCTCCTGAGAAGAAATCAT 59.173 37.037 9.37 0.00 46.80 2.45
53 54 7.684937 AACTTTCTCCTGAGAAGAAATCATG 57.315 36.000 9.37 0.00 46.80 3.07
54 55 6.777782 ACTTTCTCCTGAGAAGAAATCATGT 58.222 36.000 9.37 0.00 46.80 3.21
55 56 6.654161 ACTTTCTCCTGAGAAGAAATCATGTG 59.346 38.462 9.37 0.00 46.80 3.21
56 57 5.095145 TCTCCTGAGAAGAAATCATGTGG 57.905 43.478 0.00 0.00 33.91 4.17
57 58 4.533707 TCTCCTGAGAAGAAATCATGTGGT 59.466 41.667 0.00 0.00 33.91 4.16
58 59 5.721480 TCTCCTGAGAAGAAATCATGTGGTA 59.279 40.000 0.00 0.00 33.91 3.25
59 60 5.982356 TCCTGAGAAGAAATCATGTGGTAG 58.018 41.667 0.00 0.00 0.00 3.18
60 61 5.721480 TCCTGAGAAGAAATCATGTGGTAGA 59.279 40.000 0.00 0.00 0.00 2.59
61 62 5.814705 CCTGAGAAGAAATCATGTGGTAGAC 59.185 44.000 0.00 0.00 0.00 2.59
62 63 5.410924 TGAGAAGAAATCATGTGGTAGACG 58.589 41.667 0.00 0.00 0.00 4.18
63 64 5.047306 TGAGAAGAAATCATGTGGTAGACGT 60.047 40.000 0.00 0.00 0.00 4.34
64 65 5.171476 AGAAGAAATCATGTGGTAGACGTG 58.829 41.667 0.00 0.00 42.28 4.49
70 71 4.174411 TCATGTGGTAGACGTGAAGAAG 57.826 45.455 0.00 0.00 45.82 2.85
71 72 3.572682 TCATGTGGTAGACGTGAAGAAGT 59.427 43.478 0.00 0.00 45.82 3.01
72 73 3.364889 TGTGGTAGACGTGAAGAAGTG 57.635 47.619 0.00 0.00 0.00 3.16
73 74 2.953648 TGTGGTAGACGTGAAGAAGTGA 59.046 45.455 0.00 0.00 0.00 3.41
74 75 3.243301 TGTGGTAGACGTGAAGAAGTGAC 60.243 47.826 0.00 0.00 0.00 3.67
75 76 2.953648 TGGTAGACGTGAAGAAGTGACA 59.046 45.455 0.00 0.00 0.00 3.58
76 77 3.004419 TGGTAGACGTGAAGAAGTGACAG 59.996 47.826 0.00 0.00 0.00 3.51
77 78 3.004524 GGTAGACGTGAAGAAGTGACAGT 59.995 47.826 0.00 0.00 0.00 3.55
78 79 3.802948 AGACGTGAAGAAGTGACAGTT 57.197 42.857 0.00 0.00 0.00 3.16
79 80 4.124851 AGACGTGAAGAAGTGACAGTTT 57.875 40.909 0.00 0.00 0.00 2.66
80 81 4.504858 AGACGTGAAGAAGTGACAGTTTT 58.495 39.130 0.00 0.00 0.00 2.43
81 82 4.567159 AGACGTGAAGAAGTGACAGTTTTC 59.433 41.667 0.00 4.49 0.00 2.29
82 83 4.504858 ACGTGAAGAAGTGACAGTTTTCT 58.495 39.130 13.95 5.67 32.80 2.52
83 84 4.567159 ACGTGAAGAAGTGACAGTTTTCTC 59.433 41.667 13.95 11.14 31.16 2.87
84 85 4.317418 CGTGAAGAAGTGACAGTTTTCTCG 60.317 45.833 17.53 17.53 31.16 4.04
85 86 4.025647 GTGAAGAAGTGACAGTTTTCTCGG 60.026 45.833 13.95 0.00 31.16 4.63
86 87 3.113260 AGAAGTGACAGTTTTCTCGGG 57.887 47.619 0.00 0.00 0.00 5.14
87 88 2.143925 GAAGTGACAGTTTTCTCGGGG 58.856 52.381 0.00 0.00 0.00 5.73
88 89 0.396811 AGTGACAGTTTTCTCGGGGG 59.603 55.000 0.00 0.00 0.00 5.40
89 90 0.108019 GTGACAGTTTTCTCGGGGGT 59.892 55.000 0.00 0.00 0.00 4.95
90 91 0.107831 TGACAGTTTTCTCGGGGGTG 59.892 55.000 0.00 0.00 0.00 4.61
91 92 0.395312 GACAGTTTTCTCGGGGGTGA 59.605 55.000 0.00 0.00 0.00 4.02
92 93 0.396811 ACAGTTTTCTCGGGGGTGAG 59.603 55.000 0.00 0.00 37.33 3.51
93 94 0.955919 CAGTTTTCTCGGGGGTGAGC 60.956 60.000 0.00 0.00 35.90 4.26
94 95 2.033194 GTTTTCTCGGGGGTGAGCG 61.033 63.158 0.00 0.00 35.90 5.03
95 96 2.513259 TTTTCTCGGGGGTGAGCGT 61.513 57.895 0.00 0.00 35.90 5.07
96 97 2.444700 TTTTCTCGGGGGTGAGCGTC 62.445 60.000 0.00 0.00 35.90 5.19
102 103 3.148279 GGGGTGAGCGTCCGAGAT 61.148 66.667 0.00 0.00 0.00 2.75
103 104 2.105128 GGGTGAGCGTCCGAGATG 59.895 66.667 0.00 0.00 0.00 2.90
104 105 2.711922 GGGTGAGCGTCCGAGATGT 61.712 63.158 0.00 0.00 0.00 3.06
105 106 1.517257 GGTGAGCGTCCGAGATGTG 60.517 63.158 0.00 0.00 0.00 3.21
106 107 2.161486 GTGAGCGTCCGAGATGTGC 61.161 63.158 0.00 0.00 0.00 4.57
107 108 2.951745 GAGCGTCCGAGATGTGCG 60.952 66.667 0.00 0.00 0.00 5.34
113 114 2.892640 CCGAGATGTGCGGGAGAA 59.107 61.111 0.00 0.00 44.87 2.87
114 115 1.227089 CCGAGATGTGCGGGAGAAG 60.227 63.158 0.00 0.00 44.87 2.85
115 116 1.880340 CGAGATGTGCGGGAGAAGC 60.880 63.158 0.00 0.00 0.00 3.86
116 117 1.219124 GAGATGTGCGGGAGAAGCA 59.781 57.895 0.00 0.00 42.99 3.91
117 118 0.809241 GAGATGTGCGGGAGAAGCAG 60.809 60.000 0.00 0.00 46.10 4.24
118 119 1.219124 GATGTGCGGGAGAAGCAGA 59.781 57.895 0.00 0.00 46.10 4.26
119 120 1.910722 ATGTGCGGGAGAAGCAGAT 59.089 52.632 0.00 0.00 46.10 2.90
120 121 0.254178 ATGTGCGGGAGAAGCAGATT 59.746 50.000 0.00 0.00 44.61 2.40
121 122 0.036732 TGTGCGGGAGAAGCAGATTT 59.963 50.000 0.00 0.00 46.10 2.17
122 123 0.729690 GTGCGGGAGAAGCAGATTTC 59.270 55.000 0.00 0.00 46.10 2.17
123 124 0.615331 TGCGGGAGAAGCAGATTTCT 59.385 50.000 0.00 0.00 40.01 2.52
129 130 2.021355 AGAAGCAGATTTCTCAGGCG 57.979 50.000 0.00 0.00 31.97 5.52
130 131 1.552337 AGAAGCAGATTTCTCAGGCGA 59.448 47.619 0.00 0.00 31.97 5.54
131 132 1.932511 GAAGCAGATTTCTCAGGCGAG 59.067 52.381 0.00 0.77 40.98 5.03
132 133 0.461693 AGCAGATTTCTCAGGCGAGC 60.462 55.000 0.00 0.00 39.30 5.03
133 134 0.461693 GCAGATTTCTCAGGCGAGCT 60.462 55.000 0.00 0.00 39.30 4.09
134 135 2.011046 GCAGATTTCTCAGGCGAGCTT 61.011 52.381 0.00 0.00 39.30 3.74
135 136 1.664659 CAGATTTCTCAGGCGAGCTTG 59.335 52.381 0.42 0.42 39.30 4.01
136 137 0.376502 GATTTCTCAGGCGAGCTTGC 59.623 55.000 18.32 18.32 39.30 4.01
137 138 1.364626 ATTTCTCAGGCGAGCTTGCG 61.365 55.000 19.73 7.18 39.30 4.85
138 139 3.939837 TTCTCAGGCGAGCTTGCGG 62.940 63.158 19.73 14.15 39.30 5.69
145 146 2.436646 CGAGCTTGCGGGGTCATT 60.437 61.111 8.28 0.00 33.84 2.57
146 147 2.040544 CGAGCTTGCGGGGTCATTT 61.041 57.895 8.28 0.00 33.84 2.32
147 148 1.508088 GAGCTTGCGGGGTCATTTG 59.492 57.895 0.00 0.00 34.32 2.32
148 149 1.937546 GAGCTTGCGGGGTCATTTGG 61.938 60.000 0.00 0.00 34.32 3.28
149 150 3.005540 GCTTGCGGGGTCATTTGGG 62.006 63.158 0.00 0.00 0.00 4.12
150 151 1.304052 CTTGCGGGGTCATTTGGGA 60.304 57.895 0.00 0.00 0.00 4.37
151 152 0.897863 CTTGCGGGGTCATTTGGGAA 60.898 55.000 0.00 0.00 0.00 3.97
152 153 0.897863 TTGCGGGGTCATTTGGGAAG 60.898 55.000 0.00 0.00 0.00 3.46
153 154 1.001393 GCGGGGTCATTTGGGAAGA 60.001 57.895 0.00 0.00 0.00 2.87
154 155 1.032114 GCGGGGTCATTTGGGAAGAG 61.032 60.000 0.00 0.00 0.00 2.85
155 156 0.394352 CGGGGTCATTTGGGAAGAGG 60.394 60.000 0.00 0.00 0.00 3.69
156 157 0.684479 GGGGTCATTTGGGAAGAGGC 60.684 60.000 0.00 0.00 0.00 4.70
157 158 1.032114 GGGTCATTTGGGAAGAGGCG 61.032 60.000 0.00 0.00 0.00 5.52
158 159 0.035439 GGTCATTTGGGAAGAGGCGA 60.035 55.000 0.00 0.00 0.00 5.54
159 160 1.373570 GTCATTTGGGAAGAGGCGAG 58.626 55.000 0.00 0.00 0.00 5.03
160 161 0.253044 TCATTTGGGAAGAGGCGAGG 59.747 55.000 0.00 0.00 0.00 4.63
161 162 0.035056 CATTTGGGAAGAGGCGAGGT 60.035 55.000 0.00 0.00 0.00 3.85
162 163 0.253327 ATTTGGGAAGAGGCGAGGTC 59.747 55.000 0.00 0.00 0.00 3.85
163 164 1.125093 TTTGGGAAGAGGCGAGGTCA 61.125 55.000 0.00 0.00 0.00 4.02
164 165 1.125093 TTGGGAAGAGGCGAGGTCAA 61.125 55.000 0.00 0.00 0.00 3.18
165 166 1.125093 TGGGAAGAGGCGAGGTCAAA 61.125 55.000 0.00 0.00 0.00 2.69
166 167 0.391793 GGGAAGAGGCGAGGTCAAAG 60.392 60.000 0.00 0.00 0.00 2.77
167 168 0.608640 GGAAGAGGCGAGGTCAAAGA 59.391 55.000 0.00 0.00 0.00 2.52
168 169 1.002087 GGAAGAGGCGAGGTCAAAGAA 59.998 52.381 0.00 0.00 0.00 2.52
169 170 2.070028 GAAGAGGCGAGGTCAAAGAAC 58.930 52.381 0.00 0.00 0.00 3.01
170 171 0.038159 AGAGGCGAGGTCAAAGAACG 60.038 55.000 0.00 0.00 0.00 3.95
171 172 0.038526 GAGGCGAGGTCAAAGAACGA 60.039 55.000 0.00 0.00 0.00 3.85
172 173 0.391597 AGGCGAGGTCAAAGAACGAA 59.608 50.000 0.00 0.00 0.00 3.85
173 174 0.790814 GGCGAGGTCAAAGAACGAAG 59.209 55.000 0.00 0.00 0.00 3.79
174 175 0.790814 GCGAGGTCAAAGAACGAAGG 59.209 55.000 0.00 0.00 0.00 3.46
175 176 1.429463 CGAGGTCAAAGAACGAAGGG 58.571 55.000 0.00 0.00 0.00 3.95
176 177 1.000506 CGAGGTCAAAGAACGAAGGGA 59.999 52.381 0.00 0.00 0.00 4.20
177 178 2.353803 CGAGGTCAAAGAACGAAGGGAT 60.354 50.000 0.00 0.00 0.00 3.85
178 179 3.263261 GAGGTCAAAGAACGAAGGGATC 58.737 50.000 0.00 0.00 0.00 3.36
195 196 9.688592 CGAAGGGATCGTATAGTACTTTAAAAT 57.311 33.333 0.00 0.00 46.52 1.82
215 216 5.904362 AATGAAAGAAATAGAGGTGTGGC 57.096 39.130 0.00 0.00 0.00 5.01
216 217 4.365514 TGAAAGAAATAGAGGTGTGGCA 57.634 40.909 0.00 0.00 0.00 4.92
217 218 4.326826 TGAAAGAAATAGAGGTGTGGCAG 58.673 43.478 0.00 0.00 0.00 4.85
218 219 4.202461 TGAAAGAAATAGAGGTGTGGCAGT 60.202 41.667 0.00 0.00 0.00 4.40
219 220 4.373156 AAGAAATAGAGGTGTGGCAGTT 57.627 40.909 0.00 0.00 0.00 3.16
220 221 4.373156 AGAAATAGAGGTGTGGCAGTTT 57.627 40.909 0.00 0.00 0.00 2.66
221 222 4.729868 AGAAATAGAGGTGTGGCAGTTTT 58.270 39.130 0.00 0.00 0.00 2.43
222 223 4.520492 AGAAATAGAGGTGTGGCAGTTTTG 59.480 41.667 0.00 0.00 0.00 2.44
235 236 4.108699 GCAGTTTTGCTTATATGGCACA 57.891 40.909 0.00 0.00 46.95 4.57
236 237 3.859386 GCAGTTTTGCTTATATGGCACAC 59.141 43.478 0.00 5.66 45.13 3.82
237 238 5.483052 GCAGTTTTGCTTATATGGCACACG 61.483 45.833 0.00 0.00 45.13 4.49
238 239 7.826339 GCAGTTTTGCTTATATGGCACACGT 62.826 44.000 0.00 0.00 45.13 4.49
252 253 2.850321 CACACGTGTGCCAAATATCAC 58.150 47.619 33.52 0.00 39.39 3.06
253 254 2.225255 CACACGTGTGCCAAATATCACA 59.775 45.455 33.52 0.00 40.50 3.58
254 255 2.483877 ACACGTGTGCCAAATATCACAG 59.516 45.455 22.71 0.00 43.01 3.66
255 256 2.483877 CACGTGTGCCAAATATCACAGT 59.516 45.455 7.58 0.00 43.01 3.55
256 257 2.742053 ACGTGTGCCAAATATCACAGTC 59.258 45.455 0.00 0.00 43.01 3.51
257 258 2.741517 CGTGTGCCAAATATCACAGTCA 59.258 45.455 0.00 0.00 43.01 3.41
258 259 3.374988 CGTGTGCCAAATATCACAGTCAT 59.625 43.478 0.00 0.00 43.01 3.06
259 260 4.142622 CGTGTGCCAAATATCACAGTCATT 60.143 41.667 0.00 0.00 43.01 2.57
260 261 5.619757 CGTGTGCCAAATATCACAGTCATTT 60.620 40.000 0.00 0.00 43.01 2.32
261 262 6.158598 GTGTGCCAAATATCACAGTCATTTT 58.841 36.000 0.00 0.00 43.01 1.82
262 263 6.308766 GTGTGCCAAATATCACAGTCATTTTC 59.691 38.462 0.00 0.00 43.01 2.29
263 264 5.807011 GTGCCAAATATCACAGTCATTTTCC 59.193 40.000 0.00 0.00 33.63 3.13
264 265 5.716228 TGCCAAATATCACAGTCATTTTCCT 59.284 36.000 0.00 0.00 0.00 3.36
265 266 6.211184 TGCCAAATATCACAGTCATTTTCCTT 59.789 34.615 0.00 0.00 0.00 3.36
266 267 7.099120 GCCAAATATCACAGTCATTTTCCTTT 58.901 34.615 0.00 0.00 0.00 3.11
267 268 7.603784 GCCAAATATCACAGTCATTTTCCTTTT 59.396 33.333 0.00 0.00 0.00 2.27
271 272 6.590234 ATCACAGTCATTTTCCTTTTACCC 57.410 37.500 0.00 0.00 0.00 3.69
272 273 5.701224 TCACAGTCATTTTCCTTTTACCCT 58.299 37.500 0.00 0.00 0.00 4.34
273 274 6.133356 TCACAGTCATTTTCCTTTTACCCTT 58.867 36.000 0.00 0.00 0.00 3.95
274 275 6.609616 TCACAGTCATTTTCCTTTTACCCTTT 59.390 34.615 0.00 0.00 0.00 3.11
275 276 7.125053 TCACAGTCATTTTCCTTTTACCCTTTT 59.875 33.333 0.00 0.00 0.00 2.27
276 277 7.438160 CACAGTCATTTTCCTTTTACCCTTTTC 59.562 37.037 0.00 0.00 0.00 2.29
277 278 7.344612 ACAGTCATTTTCCTTTTACCCTTTTCT 59.655 33.333 0.00 0.00 0.00 2.52
278 279 8.204160 CAGTCATTTTCCTTTTACCCTTTTCTT 58.796 33.333 0.00 0.00 0.00 2.52
279 280 8.768397 AGTCATTTTCCTTTTACCCTTTTCTTT 58.232 29.630 0.00 0.00 0.00 2.52
280 281 9.391006 GTCATTTTCCTTTTACCCTTTTCTTTT 57.609 29.630 0.00 0.00 0.00 2.27
281 282 9.967451 TCATTTTCCTTTTACCCTTTTCTTTTT 57.033 25.926 0.00 0.00 0.00 1.94
283 284 8.795842 TTTTCCTTTTACCCTTTTCTTTTTCC 57.204 30.769 0.00 0.00 0.00 3.13
284 285 7.743116 TTCCTTTTACCCTTTTCTTTTTCCT 57.257 32.000 0.00 0.00 0.00 3.36
285 286 7.119709 TCCTTTTACCCTTTTCTTTTTCCTG 57.880 36.000 0.00 0.00 0.00 3.86
286 287 6.670464 TCCTTTTACCCTTTTCTTTTTCCTGT 59.330 34.615 0.00 0.00 0.00 4.00
287 288 7.181305 TCCTTTTACCCTTTTCTTTTTCCTGTT 59.819 33.333 0.00 0.00 0.00 3.16
288 289 7.827236 CCTTTTACCCTTTTCTTTTTCCTGTTT 59.173 33.333 0.00 0.00 0.00 2.83
289 290 8.554835 TTTTACCCTTTTCTTTTTCCTGTTTG 57.445 30.769 0.00 0.00 0.00 2.93
290 291 5.755409 ACCCTTTTCTTTTTCCTGTTTGT 57.245 34.783 0.00 0.00 0.00 2.83
291 292 5.730550 ACCCTTTTCTTTTTCCTGTTTGTC 58.269 37.500 0.00 0.00 0.00 3.18
292 293 5.116180 CCCTTTTCTTTTTCCTGTTTGTCC 58.884 41.667 0.00 0.00 0.00 4.02
293 294 5.104941 CCCTTTTCTTTTTCCTGTTTGTCCT 60.105 40.000 0.00 0.00 0.00 3.85
294 295 6.406370 CCTTTTCTTTTTCCTGTTTGTCCTT 58.594 36.000 0.00 0.00 0.00 3.36
295 296 6.878923 CCTTTTCTTTTTCCTGTTTGTCCTTT 59.121 34.615 0.00 0.00 0.00 3.11
296 297 7.390440 CCTTTTCTTTTTCCTGTTTGTCCTTTT 59.610 33.333 0.00 0.00 0.00 2.27
297 298 8.684386 TTTTCTTTTTCCTGTTTGTCCTTTTT 57.316 26.923 0.00 0.00 0.00 1.94
298 299 7.899178 TTCTTTTTCCTGTTTGTCCTTTTTC 57.101 32.000 0.00 0.00 0.00 2.29
299 300 6.403049 TCTTTTTCCTGTTTGTCCTTTTTCC 58.597 36.000 0.00 0.00 0.00 3.13
300 301 6.212589 TCTTTTTCCTGTTTGTCCTTTTTCCT 59.787 34.615 0.00 0.00 0.00 3.36
301 302 6.367374 TTTTCCTGTTTGTCCTTTTTCCTT 57.633 33.333 0.00 0.00 0.00 3.36
302 303 6.367374 TTTCCTGTTTGTCCTTTTTCCTTT 57.633 33.333 0.00 0.00 0.00 3.11
303 304 6.367374 TTCCTGTTTGTCCTTTTTCCTTTT 57.633 33.333 0.00 0.00 0.00 2.27
304 305 6.367374 TCCTGTTTGTCCTTTTTCCTTTTT 57.633 33.333 0.00 0.00 0.00 1.94
305 306 7.483580 TCCTGTTTGTCCTTTTTCCTTTTTA 57.516 32.000 0.00 0.00 0.00 1.52
306 307 7.908453 TCCTGTTTGTCCTTTTTCCTTTTTAA 58.092 30.769 0.00 0.00 0.00 1.52
307 308 8.544622 TCCTGTTTGTCCTTTTTCCTTTTTAAT 58.455 29.630 0.00 0.00 0.00 1.40
308 309 9.173021 CCTGTTTGTCCTTTTTCCTTTTTAATT 57.827 29.630 0.00 0.00 0.00 1.40
422 426 8.196103 TCATCAAATTCAAAGTGTGTTCATGAA 58.804 29.630 3.38 3.38 34.80 2.57
559 563 8.871686 AAGTTCATAGTGTTCAAAATTTGGTC 57.128 30.769 5.83 0.66 0.00 4.02
563 567 3.705604 AGTGTTCAAAATTTGGTCAGCG 58.294 40.909 5.83 0.00 0.00 5.18
568 572 5.163602 TGTTCAAAATTTGGTCAGCGTAACT 60.164 36.000 5.83 0.00 0.00 2.24
579 583 6.210078 TGGTCAGCGTAACTTTTTAAAATGG 58.790 36.000 15.81 8.68 0.00 3.16
625 629 9.480053 TTCATTCATCTTTCAAAAAGTTCATCC 57.520 29.630 0.00 0.00 0.00 3.51
626 630 8.863086 TCATTCATCTTTCAAAAAGTTCATCCT 58.137 29.630 0.00 0.00 0.00 3.24
627 631 9.485206 CATTCATCTTTCAAAAAGTTCATCCTT 57.515 29.630 0.00 0.00 0.00 3.36
641 657 9.492973 AAAGTTCATCCTTATTTTGTTGAATGG 57.507 29.630 0.00 0.00 0.00 3.16
719 735 2.045926 CCTGCCAAGAAGTCCCGG 60.046 66.667 0.00 0.00 0.00 5.73
753 773 6.693342 CCGACAGTTCTTATACGCTAAAAAG 58.307 40.000 0.00 0.00 0.00 2.27
765 785 2.476185 CGCTAAAAAGAATGACAGCCGG 60.476 50.000 0.00 0.00 0.00 6.13
772 792 3.925630 AATGACAGCCGGCAGTGGG 62.926 63.158 30.65 14.48 0.00 4.61
822 842 3.302480 CGGAGCAATACACGTATTTCAGC 60.302 47.826 0.00 1.97 33.79 4.26
829 849 6.470160 CAATACACGTATTTCAGCTGTCTTC 58.530 40.000 14.67 1.47 33.79 2.87
839 859 2.294233 TCAGCTGTCTTCAATGCAAACC 59.706 45.455 14.67 0.00 0.00 3.27
858 878 2.299013 ACCGCATCACTGAAGTTCTACA 59.701 45.455 4.17 0.00 0.00 2.74
860 880 3.308053 CCGCATCACTGAAGTTCTACATG 59.692 47.826 4.17 0.00 0.00 3.21
875 895 2.125269 ATGCCCGAACCTACACGC 60.125 61.111 0.00 0.00 0.00 5.34
881 901 2.304401 CGAACCTACACGCGTTGCA 61.304 57.895 10.22 0.00 0.00 4.08
912 932 0.100503 GTTGCAGCAAAACTCCACGT 59.899 50.000 10.11 0.00 0.00 4.49
914 934 1.225855 TGCAGCAAAACTCCACGTAG 58.774 50.000 0.00 0.00 0.00 3.51
919 939 1.069227 GCAAAACTCCACGTAGCCAAG 60.069 52.381 0.00 0.00 0.00 3.61
923 943 1.153823 CTCCACGTAGCCAAGGTCG 60.154 63.158 0.00 0.00 0.00 4.79
946 966 5.286558 CGAAAGAGAAATCTTACTCGTCCAC 59.713 44.000 4.66 0.00 38.08 4.02
974 994 2.482374 GCAGTCGCATCAACTGGC 59.518 61.111 5.51 0.00 43.50 4.85
989 1009 1.712977 CTGGCGCCATCTTTCAGAGC 61.713 60.000 32.87 0.00 0.00 4.09
992 1012 1.435408 GCGCCATCTTTCAGAGCCTC 61.435 60.000 0.00 0.00 0.00 4.70
1022 1042 3.081409 GCCCTCTTCCCCTACGCA 61.081 66.667 0.00 0.00 0.00 5.24
1024 1044 1.221021 CCCTCTTCCCCTACGCAAC 59.779 63.158 0.00 0.00 0.00 4.17
1155 1184 2.887568 GCCCTCATCGTCGTGCTG 60.888 66.667 0.00 0.00 0.00 4.41
1204 1233 4.854784 GCCTCGTCTGCGCGATCA 62.855 66.667 12.10 0.00 40.29 2.92
1296 1325 4.088421 GGTGACGCGTACTCATGG 57.912 61.111 13.97 0.00 0.00 3.66
1299 1328 0.525668 GTGACGCGTACTCATGGGAG 60.526 60.000 13.97 0.00 46.96 4.30
1314 1343 1.760480 GGAGGAGGAGGAGGAGCAC 60.760 68.421 0.00 0.00 0.00 4.40
1342 1371 0.318441 AGCAGAGCTAGAAACACGCA 59.682 50.000 0.00 0.00 36.99 5.24
1347 1376 2.740714 GCTAGAAACACGCAGCCGG 61.741 63.158 0.00 0.00 39.22 6.13
1400 1429 1.337071 TGAGTCCATCGATCCTTACGC 59.663 52.381 0.00 0.00 0.00 4.42
1423 1452 2.163818 TGAGCAAGATCGTCGGTTTT 57.836 45.000 0.00 0.00 0.00 2.43
1487 1516 5.423290 TGAGTGAGCATTTCTTCTCTATCCA 59.577 40.000 0.00 0.00 32.68 3.41
1491 1520 4.063689 AGCATTTCTTCTCTATCCATGCG 58.936 43.478 0.00 0.00 40.39 4.73
1604 1636 2.159393 CGCAAAGAGAGAGACTGGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
1619 1654 1.968493 GGAGAGGGTGAACAGTACACA 59.032 52.381 0.00 0.00 39.65 3.72
1645 1680 0.391661 CACATACAGGTTCAGGCGCT 60.392 55.000 7.64 0.00 0.00 5.92
1675 1710 5.050490 AGTGTGATTACGATGTGCTTATCC 58.950 41.667 0.00 0.00 0.00 2.59
1702 1737 2.914097 GCACTGGGCTGCAAGGTT 60.914 61.111 0.50 0.00 40.25 3.50
1715 1750 1.200020 GCAAGGTTCGATTGTTCTGGG 59.800 52.381 0.00 0.00 0.00 4.45
1716 1751 1.200020 CAAGGTTCGATTGTTCTGGGC 59.800 52.381 0.00 0.00 0.00 5.36
1719 1754 0.521735 GTTCGATTGTTCTGGGCCAC 59.478 55.000 0.00 0.00 0.00 5.01
1722 1757 1.875963 GATTGTTCTGGGCCACACG 59.124 57.895 0.00 0.00 0.00 4.49
1723 1758 0.605319 GATTGTTCTGGGCCACACGA 60.605 55.000 0.00 2.35 0.00 4.35
1724 1759 0.179004 ATTGTTCTGGGCCACACGAA 60.179 50.000 0.00 1.54 0.00 3.85
1725 1760 1.098712 TTGTTCTGGGCCACACGAAC 61.099 55.000 23.24 23.24 37.55 3.95
1726 1761 2.112297 TTCTGGGCCACACGAACC 59.888 61.111 0.00 0.00 0.00 3.62
1727 1762 2.448582 TTCTGGGCCACACGAACCT 61.449 57.895 0.00 0.00 0.00 3.50
1728 1763 2.669569 CTGGGCCACACGAACCTG 60.670 66.667 0.00 0.00 0.00 4.00
1730 1765 2.358737 GGGCCACACGAACCTGAG 60.359 66.667 4.39 0.00 0.00 3.35
1731 1766 2.741092 GGCCACACGAACCTGAGA 59.259 61.111 0.00 0.00 0.00 3.27
1732 1767 1.070786 GGCCACACGAACCTGAGAA 59.929 57.895 0.00 0.00 0.00 2.87
1733 1768 0.534203 GGCCACACGAACCTGAGAAA 60.534 55.000 0.00 0.00 0.00 2.52
1734 1769 1.305201 GCCACACGAACCTGAGAAAA 58.695 50.000 0.00 0.00 0.00 2.29
1735 1770 1.673920 GCCACACGAACCTGAGAAAAA 59.326 47.619 0.00 0.00 0.00 1.94
1736 1771 2.540973 GCCACACGAACCTGAGAAAAAC 60.541 50.000 0.00 0.00 0.00 2.43
1738 1773 1.937899 ACACGAACCTGAGAAAAACGG 59.062 47.619 0.00 0.00 0.00 4.44
1739 1774 1.263217 CACGAACCTGAGAAAAACGGG 59.737 52.381 0.00 0.00 39.46 5.28
1747 1784 0.666374 GAGAAAAACGGGGTGTGTGG 59.334 55.000 0.00 0.00 0.00 4.17
1756 1793 2.515901 GGTGTGTGGTTCTGCCCT 59.484 61.111 0.00 0.00 36.04 5.19
1771 1808 3.754043 CCTGGTCCAGGCCCATTA 58.246 61.111 25.31 0.00 45.13 1.90
1800 1837 4.142049 CCGCTCTGATCTCTAGGTTTTTCT 60.142 45.833 0.00 0.00 0.00 2.52
1852 1890 4.096382 GCAAAGAACACTCCACTTTCTCAA 59.904 41.667 0.00 0.00 32.59 3.02
1882 1920 3.118454 GGCGTACATGCAGCACGT 61.118 61.111 15.96 0.00 39.21 4.49
2157 2201 1.714794 CCTCTCGCGAAATCACAACT 58.285 50.000 11.33 0.00 0.00 3.16
2161 2205 1.526887 CTCGCGAAATCACAACTGTGT 59.473 47.619 11.33 0.00 45.76 3.72
2174 2218 3.119101 ACAACTGTGTCTCTCGTGAAAGT 60.119 43.478 0.00 0.00 29.49 2.66
2188 2232 3.361339 CGTGAAAGTAAAACCGTGACTCG 60.361 47.826 0.00 0.00 39.52 4.18
2189 2233 3.553105 GTGAAAGTAAAACCGTGACTCGT 59.447 43.478 0.00 0.00 37.94 4.18
2191 2235 5.231991 GTGAAAGTAAAACCGTGACTCGTAA 59.768 40.000 0.00 0.00 37.94 3.18
2192 2236 5.809562 TGAAAGTAAAACCGTGACTCGTAAA 59.190 36.000 0.00 0.00 37.94 2.01
2193 2237 6.312426 TGAAAGTAAAACCGTGACTCGTAAAA 59.688 34.615 0.00 0.00 37.94 1.52
2194 2238 5.895216 AGTAAAACCGTGACTCGTAAAAG 57.105 39.130 0.00 0.00 37.94 2.27
2195 2239 4.746611 AGTAAAACCGTGACTCGTAAAAGG 59.253 41.667 0.00 0.00 37.94 3.11
2348 2404 4.675063 TTTTTCCCTTTCCTAGAGGCAT 57.325 40.909 0.00 0.00 32.74 4.40
2375 2431 4.351192 GTGAATTTCACGAAAGCACAACT 58.649 39.130 13.42 0.00 37.67 3.16
2410 2466 1.098712 GCAAAACCGTGACTCCCACA 61.099 55.000 0.00 0.00 45.98 4.17
2449 2508 5.888691 AACGCATTTTGTTTTTCCCTTTT 57.111 30.435 0.00 0.00 0.00 2.27
2456 2515 7.926018 GCATTTTGTTTTTCCCTTTTCTAGAGA 59.074 33.333 0.00 0.00 0.00 3.10
2520 2579 4.559300 CGGAAGCAAAACCATGACTTTCAT 60.559 41.667 0.00 0.00 37.65 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.836076 CCATGATATTTGTATGCAAGTTATCAG 57.164 33.333 22.94 17.77 40.58 2.90
7 8 8.752005 AGTTACCATGATATTTGTATGCAAGT 57.248 30.769 0.00 0.00 35.82 3.16
10 11 9.407380 AGAAAGTTACCATGATATTTGTATGCA 57.593 29.630 0.00 0.00 0.00 3.96
11 12 9.884465 GAGAAAGTTACCATGATATTTGTATGC 57.116 33.333 0.00 0.00 0.00 3.14
14 15 9.613428 CAGGAGAAAGTTACCATGATATTTGTA 57.387 33.333 0.00 0.00 0.00 2.41
15 16 8.328758 TCAGGAGAAAGTTACCATGATATTTGT 58.671 33.333 0.00 0.00 0.00 2.83
16 17 8.737168 TCAGGAGAAAGTTACCATGATATTTG 57.263 34.615 0.00 0.00 0.00 2.32
17 18 8.772250 TCTCAGGAGAAAGTTACCATGATATTT 58.228 33.333 0.00 0.00 33.91 1.40
18 19 8.324191 TCTCAGGAGAAAGTTACCATGATATT 57.676 34.615 0.00 0.00 33.91 1.28
19 20 7.921041 TCTCAGGAGAAAGTTACCATGATAT 57.079 36.000 0.00 0.00 33.91 1.63
20 21 7.619698 TCTTCTCAGGAGAAAGTTACCATGATA 59.380 37.037 12.40 0.00 45.75 2.15
21 22 6.441924 TCTTCTCAGGAGAAAGTTACCATGAT 59.558 38.462 12.40 0.00 45.75 2.45
22 23 5.780282 TCTTCTCAGGAGAAAGTTACCATGA 59.220 40.000 12.40 1.50 45.75 3.07
23 24 6.042638 TCTTCTCAGGAGAAAGTTACCATG 57.957 41.667 12.40 0.00 45.75 3.66
24 25 6.688073 TTCTTCTCAGGAGAAAGTTACCAT 57.312 37.500 12.40 0.00 45.75 3.55
25 26 6.494666 TTTCTTCTCAGGAGAAAGTTACCA 57.505 37.500 3.74 0.00 45.75 3.25
26 27 7.162082 TGATTTCTTCTCAGGAGAAAGTTACC 58.838 38.462 13.79 2.02 45.75 2.85
27 28 8.663911 CATGATTTCTTCTCAGGAGAAAGTTAC 58.336 37.037 13.79 6.15 45.75 2.50
28 29 8.378565 ACATGATTTCTTCTCAGGAGAAAGTTA 58.621 33.333 13.79 3.37 45.75 2.24
29 30 7.174599 CACATGATTTCTTCTCAGGAGAAAGTT 59.825 37.037 13.79 0.00 45.75 2.66
30 31 6.654161 CACATGATTTCTTCTCAGGAGAAAGT 59.346 38.462 13.79 3.56 45.75 2.66
31 32 6.093771 CCACATGATTTCTTCTCAGGAGAAAG 59.906 42.308 13.79 2.95 45.75 2.62
32 33 5.942236 CCACATGATTTCTTCTCAGGAGAAA 59.058 40.000 10.78 10.78 45.75 2.52
33 34 5.013495 ACCACATGATTTCTTCTCAGGAGAA 59.987 40.000 11.00 11.00 44.47 2.87
34 35 4.533707 ACCACATGATTTCTTCTCAGGAGA 59.466 41.667 0.00 0.00 35.27 3.71
35 36 4.841422 ACCACATGATTTCTTCTCAGGAG 58.159 43.478 0.00 0.00 0.00 3.69
36 37 4.916041 ACCACATGATTTCTTCTCAGGA 57.084 40.909 0.00 0.00 0.00 3.86
37 38 5.814705 GTCTACCACATGATTTCTTCTCAGG 59.185 44.000 0.00 0.00 0.00 3.86
38 39 5.518128 CGTCTACCACATGATTTCTTCTCAG 59.482 44.000 0.00 0.00 0.00 3.35
39 40 5.047306 ACGTCTACCACATGATTTCTTCTCA 60.047 40.000 0.00 0.00 0.00 3.27
40 41 5.289675 CACGTCTACCACATGATTTCTTCTC 59.710 44.000 0.00 0.00 0.00 2.87
41 42 5.047306 TCACGTCTACCACATGATTTCTTCT 60.047 40.000 0.00 0.00 0.00 2.85
42 43 5.168569 TCACGTCTACCACATGATTTCTTC 58.831 41.667 0.00 0.00 0.00 2.87
43 44 5.147330 TCACGTCTACCACATGATTTCTT 57.853 39.130 0.00 0.00 0.00 2.52
44 45 4.801330 TCACGTCTACCACATGATTTCT 57.199 40.909 0.00 0.00 0.00 2.52
45 46 5.168569 TCTTCACGTCTACCACATGATTTC 58.831 41.667 0.00 0.00 0.00 2.17
46 47 5.147330 TCTTCACGTCTACCACATGATTT 57.853 39.130 0.00 0.00 0.00 2.17
47 48 4.801330 TCTTCACGTCTACCACATGATT 57.199 40.909 0.00 0.00 0.00 2.57
48 49 4.220821 ACTTCTTCACGTCTACCACATGAT 59.779 41.667 0.00 0.00 0.00 2.45
49 50 3.572682 ACTTCTTCACGTCTACCACATGA 59.427 43.478 0.00 0.00 0.00 3.07
50 51 3.675225 CACTTCTTCACGTCTACCACATG 59.325 47.826 0.00 0.00 0.00 3.21
51 52 3.572682 TCACTTCTTCACGTCTACCACAT 59.427 43.478 0.00 0.00 0.00 3.21
52 53 2.953648 TCACTTCTTCACGTCTACCACA 59.046 45.455 0.00 0.00 0.00 4.17
53 54 3.243301 TGTCACTTCTTCACGTCTACCAC 60.243 47.826 0.00 0.00 0.00 4.16
54 55 2.953648 TGTCACTTCTTCACGTCTACCA 59.046 45.455 0.00 0.00 0.00 3.25
55 56 3.004524 ACTGTCACTTCTTCACGTCTACC 59.995 47.826 0.00 0.00 0.00 3.18
56 57 4.226113 ACTGTCACTTCTTCACGTCTAC 57.774 45.455 0.00 0.00 0.00 2.59
57 58 4.913335 AACTGTCACTTCTTCACGTCTA 57.087 40.909 0.00 0.00 0.00 2.59
58 59 3.802948 AACTGTCACTTCTTCACGTCT 57.197 42.857 0.00 0.00 0.00 4.18
59 60 4.567159 AGAAAACTGTCACTTCTTCACGTC 59.433 41.667 0.00 0.00 0.00 4.34
60 61 4.504858 AGAAAACTGTCACTTCTTCACGT 58.495 39.130 0.00 0.00 0.00 4.49
61 62 4.317418 CGAGAAAACTGTCACTTCTTCACG 60.317 45.833 2.51 0.00 29.59 4.35
62 63 4.025647 CCGAGAAAACTGTCACTTCTTCAC 60.026 45.833 0.00 0.00 29.59 3.18
63 64 4.119862 CCGAGAAAACTGTCACTTCTTCA 58.880 43.478 0.00 0.00 29.59 3.02
64 65 3.495001 CCCGAGAAAACTGTCACTTCTTC 59.505 47.826 0.00 0.00 29.59 2.87
65 66 3.467803 CCCGAGAAAACTGTCACTTCTT 58.532 45.455 0.00 0.00 29.59 2.52
66 67 2.224305 CCCCGAGAAAACTGTCACTTCT 60.224 50.000 0.00 0.88 32.11 2.85
67 68 2.143925 CCCCGAGAAAACTGTCACTTC 58.856 52.381 0.00 0.00 0.00 3.01
68 69 1.202770 CCCCCGAGAAAACTGTCACTT 60.203 52.381 0.00 0.00 0.00 3.16
69 70 0.396811 CCCCCGAGAAAACTGTCACT 59.603 55.000 0.00 0.00 0.00 3.41
70 71 0.108019 ACCCCCGAGAAAACTGTCAC 59.892 55.000 0.00 0.00 0.00 3.67
71 72 0.107831 CACCCCCGAGAAAACTGTCA 59.892 55.000 0.00 0.00 0.00 3.58
72 73 0.395312 TCACCCCCGAGAAAACTGTC 59.605 55.000 0.00 0.00 0.00 3.51
73 74 0.396811 CTCACCCCCGAGAAAACTGT 59.603 55.000 0.00 0.00 34.79 3.55
74 75 0.955919 GCTCACCCCCGAGAAAACTG 60.956 60.000 0.00 0.00 34.79 3.16
75 76 1.375326 GCTCACCCCCGAGAAAACT 59.625 57.895 0.00 0.00 34.79 2.66
76 77 2.033194 CGCTCACCCCCGAGAAAAC 61.033 63.158 0.00 0.00 34.79 2.43
77 78 2.345991 CGCTCACCCCCGAGAAAA 59.654 61.111 0.00 0.00 34.79 2.29
78 79 2.920912 ACGCTCACCCCCGAGAAA 60.921 61.111 0.00 0.00 34.79 2.52
79 80 3.379445 GACGCTCACCCCCGAGAA 61.379 66.667 0.00 0.00 34.79 2.87
85 86 3.148279 ATCTCGGACGCTCACCCC 61.148 66.667 0.00 0.00 0.00 4.95
86 87 2.105128 CATCTCGGACGCTCACCC 59.895 66.667 0.00 0.00 0.00 4.61
87 88 1.517257 CACATCTCGGACGCTCACC 60.517 63.158 0.00 0.00 0.00 4.02
88 89 2.161486 GCACATCTCGGACGCTCAC 61.161 63.158 0.00 0.00 0.00 3.51
89 90 2.181777 GCACATCTCGGACGCTCA 59.818 61.111 0.00 0.00 0.00 4.26
90 91 2.951745 CGCACATCTCGGACGCTC 60.952 66.667 0.00 0.00 0.00 5.03
96 97 1.227089 CTTCTCCCGCACATCTCGG 60.227 63.158 0.00 0.00 46.05 4.63
97 98 1.880340 GCTTCTCCCGCACATCTCG 60.880 63.158 0.00 0.00 0.00 4.04
98 99 0.809241 CTGCTTCTCCCGCACATCTC 60.809 60.000 0.00 0.00 33.19 2.75
99 100 1.220206 CTGCTTCTCCCGCACATCT 59.780 57.895 0.00 0.00 33.19 2.90
100 101 0.179062 ATCTGCTTCTCCCGCACATC 60.179 55.000 0.00 0.00 33.19 3.06
101 102 0.254178 AATCTGCTTCTCCCGCACAT 59.746 50.000 0.00 0.00 33.19 3.21
102 103 0.036732 AAATCTGCTTCTCCCGCACA 59.963 50.000 0.00 0.00 33.19 4.57
103 104 0.729690 GAAATCTGCTTCTCCCGCAC 59.270 55.000 0.00 0.00 33.19 5.34
104 105 0.615331 AGAAATCTGCTTCTCCCGCA 59.385 50.000 0.00 0.00 29.31 5.69
105 106 1.294857 GAGAAATCTGCTTCTCCCGC 58.705 55.000 2.73 0.00 43.73 6.13
110 111 1.552337 TCGCCTGAGAAATCTGCTTCT 59.448 47.619 0.00 0.00 38.39 2.85
111 112 1.932511 CTCGCCTGAGAAATCTGCTTC 59.067 52.381 0.00 0.00 45.57 3.86
112 113 2.011046 GCTCGCCTGAGAAATCTGCTT 61.011 52.381 0.00 0.00 45.57 3.91
113 114 0.461693 GCTCGCCTGAGAAATCTGCT 60.462 55.000 0.00 0.00 45.57 4.24
114 115 0.461693 AGCTCGCCTGAGAAATCTGC 60.462 55.000 0.00 0.00 45.57 4.26
115 116 1.664659 CAAGCTCGCCTGAGAAATCTG 59.335 52.381 0.00 0.00 45.57 2.90
116 117 2.011046 GCAAGCTCGCCTGAGAAATCT 61.011 52.381 0.00 0.00 45.57 2.40
117 118 0.376502 GCAAGCTCGCCTGAGAAATC 59.623 55.000 0.00 0.00 45.57 2.17
118 119 1.364626 CGCAAGCTCGCCTGAGAAAT 61.365 55.000 0.00 0.00 45.57 2.17
119 120 2.029288 CGCAAGCTCGCCTGAGAAA 61.029 57.895 0.00 0.00 45.57 2.52
120 121 2.433145 CGCAAGCTCGCCTGAGAA 60.433 61.111 0.00 0.00 45.57 2.87
121 122 4.441695 CCGCAAGCTCGCCTGAGA 62.442 66.667 0.00 0.00 45.57 3.27
128 129 2.040544 AAATGACCCCGCAAGCTCG 61.041 57.895 0.00 0.00 0.00 5.03
129 130 1.508088 CAAATGACCCCGCAAGCTC 59.492 57.895 0.00 0.00 0.00 4.09
130 131 1.978617 CCAAATGACCCCGCAAGCT 60.979 57.895 0.00 0.00 0.00 3.74
131 132 2.573340 CCAAATGACCCCGCAAGC 59.427 61.111 0.00 0.00 0.00 4.01
132 133 0.897863 TTCCCAAATGACCCCGCAAG 60.898 55.000 0.00 0.00 0.00 4.01
133 134 0.897863 CTTCCCAAATGACCCCGCAA 60.898 55.000 0.00 0.00 0.00 4.85
134 135 1.304052 CTTCCCAAATGACCCCGCA 60.304 57.895 0.00 0.00 0.00 5.69
135 136 1.001393 TCTTCCCAAATGACCCCGC 60.001 57.895 0.00 0.00 0.00 6.13
136 137 0.394352 CCTCTTCCCAAATGACCCCG 60.394 60.000 0.00 0.00 0.00 5.73
137 138 0.684479 GCCTCTTCCCAAATGACCCC 60.684 60.000 0.00 0.00 0.00 4.95
138 139 1.032114 CGCCTCTTCCCAAATGACCC 61.032 60.000 0.00 0.00 0.00 4.46
139 140 0.035439 TCGCCTCTTCCCAAATGACC 60.035 55.000 0.00 0.00 0.00 4.02
140 141 1.373570 CTCGCCTCTTCCCAAATGAC 58.626 55.000 0.00 0.00 0.00 3.06
141 142 0.253044 CCTCGCCTCTTCCCAAATGA 59.747 55.000 0.00 0.00 0.00 2.57
142 143 0.035056 ACCTCGCCTCTTCCCAAATG 60.035 55.000 0.00 0.00 0.00 2.32
143 144 0.253327 GACCTCGCCTCTTCCCAAAT 59.747 55.000 0.00 0.00 0.00 2.32
144 145 1.125093 TGACCTCGCCTCTTCCCAAA 61.125 55.000 0.00 0.00 0.00 3.28
145 146 1.125093 TTGACCTCGCCTCTTCCCAA 61.125 55.000 0.00 0.00 0.00 4.12
146 147 1.125093 TTTGACCTCGCCTCTTCCCA 61.125 55.000 0.00 0.00 0.00 4.37
147 148 0.391793 CTTTGACCTCGCCTCTTCCC 60.392 60.000 0.00 0.00 0.00 3.97
148 149 0.608640 TCTTTGACCTCGCCTCTTCC 59.391 55.000 0.00 0.00 0.00 3.46
149 150 2.070028 GTTCTTTGACCTCGCCTCTTC 58.930 52.381 0.00 0.00 0.00 2.87
150 151 1.605712 CGTTCTTTGACCTCGCCTCTT 60.606 52.381 0.00 0.00 0.00 2.85
151 152 0.038159 CGTTCTTTGACCTCGCCTCT 60.038 55.000 0.00 0.00 0.00 3.69
152 153 0.038526 TCGTTCTTTGACCTCGCCTC 60.039 55.000 0.00 0.00 0.00 4.70
153 154 0.391597 TTCGTTCTTTGACCTCGCCT 59.608 50.000 0.00 0.00 0.00 5.52
154 155 0.790814 CTTCGTTCTTTGACCTCGCC 59.209 55.000 0.00 0.00 0.00 5.54
155 156 0.790814 CCTTCGTTCTTTGACCTCGC 59.209 55.000 0.00 0.00 0.00 5.03
156 157 1.000506 TCCCTTCGTTCTTTGACCTCG 59.999 52.381 0.00 0.00 0.00 4.63
157 158 2.833631 TCCCTTCGTTCTTTGACCTC 57.166 50.000 0.00 0.00 0.00 3.85
158 159 2.353803 CGATCCCTTCGTTCTTTGACCT 60.354 50.000 0.00 0.00 43.01 3.85
159 160 2.000447 CGATCCCTTCGTTCTTTGACC 59.000 52.381 0.00 0.00 43.01 4.02
189 190 8.303876 GCCACACCTCTATTTCTTTCATTTTAA 58.696 33.333 0.00 0.00 0.00 1.52
190 191 7.450014 TGCCACACCTCTATTTCTTTCATTTTA 59.550 33.333 0.00 0.00 0.00 1.52
191 192 6.267471 TGCCACACCTCTATTTCTTTCATTTT 59.733 34.615 0.00 0.00 0.00 1.82
192 193 5.774690 TGCCACACCTCTATTTCTTTCATTT 59.225 36.000 0.00 0.00 0.00 2.32
193 194 5.324409 TGCCACACCTCTATTTCTTTCATT 58.676 37.500 0.00 0.00 0.00 2.57
194 195 4.922206 TGCCACACCTCTATTTCTTTCAT 58.078 39.130 0.00 0.00 0.00 2.57
195 196 4.202461 ACTGCCACACCTCTATTTCTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
196 197 4.327680 ACTGCCACACCTCTATTTCTTTC 58.672 43.478 0.00 0.00 0.00 2.62
197 198 4.373156 ACTGCCACACCTCTATTTCTTT 57.627 40.909 0.00 0.00 0.00 2.52
198 199 4.373156 AACTGCCACACCTCTATTTCTT 57.627 40.909 0.00 0.00 0.00 2.52
199 200 4.373156 AAACTGCCACACCTCTATTTCT 57.627 40.909 0.00 0.00 0.00 2.52
200 201 4.798574 CAAAACTGCCACACCTCTATTTC 58.201 43.478 0.00 0.00 0.00 2.17
201 202 3.005791 GCAAAACTGCCACACCTCTATTT 59.994 43.478 0.00 0.00 0.00 1.40
202 203 2.558359 GCAAAACTGCCACACCTCTATT 59.442 45.455 0.00 0.00 0.00 1.73
203 204 2.162681 GCAAAACTGCCACACCTCTAT 58.837 47.619 0.00 0.00 0.00 1.98
204 205 1.142870 AGCAAAACTGCCACACCTCTA 59.857 47.619 0.00 0.00 34.90 2.43
205 206 0.106519 AGCAAAACTGCCACACCTCT 60.107 50.000 0.00 0.00 34.90 3.69
206 207 0.746659 AAGCAAAACTGCCACACCTC 59.253 50.000 0.00 0.00 34.90 3.85
207 208 2.065899 TAAGCAAAACTGCCACACCT 57.934 45.000 0.00 0.00 34.90 4.00
208 209 4.423732 CATATAAGCAAAACTGCCACACC 58.576 43.478 0.00 0.00 34.90 4.16
209 210 4.423732 CCATATAAGCAAAACTGCCACAC 58.576 43.478 0.00 0.00 34.90 3.82
210 211 3.119173 GCCATATAAGCAAAACTGCCACA 60.119 43.478 0.00 0.00 34.90 4.17
211 212 3.119173 TGCCATATAAGCAAAACTGCCAC 60.119 43.478 0.00 0.00 37.28 5.01
212 213 3.095332 TGCCATATAAGCAAAACTGCCA 58.905 40.909 0.00 0.00 37.28 4.92
213 214 3.119173 TGTGCCATATAAGCAAAACTGCC 60.119 43.478 2.62 0.00 43.02 4.85
214 215 3.859386 GTGTGCCATATAAGCAAAACTGC 59.141 43.478 2.62 0.00 43.02 4.40
215 216 4.097714 CGTGTGCCATATAAGCAAAACTG 58.902 43.478 2.62 0.27 43.02 3.16
216 217 3.756434 ACGTGTGCCATATAAGCAAAACT 59.244 39.130 2.62 0.00 43.02 2.66
217 218 3.851403 CACGTGTGCCATATAAGCAAAAC 59.149 43.478 7.58 4.43 43.02 2.43
218 219 3.504134 ACACGTGTGCCATATAAGCAAAA 59.496 39.130 22.71 0.00 43.02 2.44
219 220 3.078097 ACACGTGTGCCATATAAGCAAA 58.922 40.909 22.71 0.00 43.02 3.68
220 221 2.418280 CACACGTGTGCCATATAAGCAA 59.582 45.455 33.52 0.00 43.02 3.91
221 222 2.006169 CACACGTGTGCCATATAAGCA 58.994 47.619 33.52 0.00 39.39 3.91
222 223 2.737467 CACACGTGTGCCATATAAGC 57.263 50.000 33.52 0.00 39.39 3.09
233 234 2.483877 CTGTGATATTTGGCACACGTGT 59.516 45.455 17.22 17.22 39.86 4.49
234 235 2.483877 ACTGTGATATTTGGCACACGTG 59.516 45.455 15.48 15.48 39.86 4.49
235 236 2.742053 GACTGTGATATTTGGCACACGT 59.258 45.455 0.00 0.00 39.86 4.49
236 237 2.741517 TGACTGTGATATTTGGCACACG 59.258 45.455 0.00 0.00 39.86 4.49
237 238 4.970662 ATGACTGTGATATTTGGCACAC 57.029 40.909 0.00 0.00 39.86 3.82
238 239 5.981088 AAATGACTGTGATATTTGGCACA 57.019 34.783 0.00 0.00 42.25 4.57
239 240 5.807011 GGAAAATGACTGTGATATTTGGCAC 59.193 40.000 0.00 0.00 35.63 5.01
240 241 5.716228 AGGAAAATGACTGTGATATTTGGCA 59.284 36.000 0.00 0.00 0.00 4.92
241 242 6.212888 AGGAAAATGACTGTGATATTTGGC 57.787 37.500 0.00 0.00 0.00 4.52
245 246 8.749354 GGGTAAAAGGAAAATGACTGTGATATT 58.251 33.333 0.00 0.00 0.00 1.28
246 247 8.116026 AGGGTAAAAGGAAAATGACTGTGATAT 58.884 33.333 0.00 0.00 0.00 1.63
247 248 7.466804 AGGGTAAAAGGAAAATGACTGTGATA 58.533 34.615 0.00 0.00 0.00 2.15
248 249 6.314917 AGGGTAAAAGGAAAATGACTGTGAT 58.685 36.000 0.00 0.00 0.00 3.06
249 250 5.701224 AGGGTAAAAGGAAAATGACTGTGA 58.299 37.500 0.00 0.00 0.00 3.58
250 251 6.405278 AAGGGTAAAAGGAAAATGACTGTG 57.595 37.500 0.00 0.00 0.00 3.66
251 252 7.344612 AGAAAAGGGTAAAAGGAAAATGACTGT 59.655 33.333 0.00 0.00 0.00 3.55
252 253 7.726216 AGAAAAGGGTAAAAGGAAAATGACTG 58.274 34.615 0.00 0.00 0.00 3.51
253 254 7.914427 AGAAAAGGGTAAAAGGAAAATGACT 57.086 32.000 0.00 0.00 0.00 3.41
254 255 8.958119 AAAGAAAAGGGTAAAAGGAAAATGAC 57.042 30.769 0.00 0.00 0.00 3.06
255 256 9.967451 AAAAAGAAAAGGGTAAAAGGAAAATGA 57.033 25.926 0.00 0.00 0.00 2.57
257 258 9.403583 GGAAAAAGAAAAGGGTAAAAGGAAAAT 57.596 29.630 0.00 0.00 0.00 1.82
258 259 8.607713 AGGAAAAAGAAAAGGGTAAAAGGAAAA 58.392 29.630 0.00 0.00 0.00 2.29
259 260 8.044309 CAGGAAAAAGAAAAGGGTAAAAGGAAA 58.956 33.333 0.00 0.00 0.00 3.13
260 261 7.181305 ACAGGAAAAAGAAAAGGGTAAAAGGAA 59.819 33.333 0.00 0.00 0.00 3.36
261 262 6.670464 ACAGGAAAAAGAAAAGGGTAAAAGGA 59.330 34.615 0.00 0.00 0.00 3.36
262 263 6.884832 ACAGGAAAAAGAAAAGGGTAAAAGG 58.115 36.000 0.00 0.00 0.00 3.11
263 264 8.664798 CAAACAGGAAAAAGAAAAGGGTAAAAG 58.335 33.333 0.00 0.00 0.00 2.27
264 265 8.158132 ACAAACAGGAAAAAGAAAAGGGTAAAA 58.842 29.630 0.00 0.00 0.00 1.52
265 266 7.681679 ACAAACAGGAAAAAGAAAAGGGTAAA 58.318 30.769 0.00 0.00 0.00 2.01
266 267 7.247456 ACAAACAGGAAAAAGAAAAGGGTAA 57.753 32.000 0.00 0.00 0.00 2.85
267 268 6.127281 GGACAAACAGGAAAAAGAAAAGGGTA 60.127 38.462 0.00 0.00 0.00 3.69
268 269 5.338056 GGACAAACAGGAAAAAGAAAAGGGT 60.338 40.000 0.00 0.00 0.00 4.34
269 270 5.104941 AGGACAAACAGGAAAAAGAAAAGGG 60.105 40.000 0.00 0.00 0.00 3.95
270 271 5.977635 AGGACAAACAGGAAAAAGAAAAGG 58.022 37.500 0.00 0.00 0.00 3.11
271 272 7.905604 AAAGGACAAACAGGAAAAAGAAAAG 57.094 32.000 0.00 0.00 0.00 2.27
272 273 8.684386 AAAAAGGACAAACAGGAAAAAGAAAA 57.316 26.923 0.00 0.00 0.00 2.29
273 274 7.389330 GGAAAAAGGACAAACAGGAAAAAGAAA 59.611 33.333 0.00 0.00 0.00 2.52
274 275 6.876789 GGAAAAAGGACAAACAGGAAAAAGAA 59.123 34.615 0.00 0.00 0.00 2.52
275 276 6.212589 AGGAAAAAGGACAAACAGGAAAAAGA 59.787 34.615 0.00 0.00 0.00 2.52
276 277 6.406370 AGGAAAAAGGACAAACAGGAAAAAG 58.594 36.000 0.00 0.00 0.00 2.27
277 278 6.367374 AGGAAAAAGGACAAACAGGAAAAA 57.633 33.333 0.00 0.00 0.00 1.94
278 279 6.367374 AAGGAAAAAGGACAAACAGGAAAA 57.633 33.333 0.00 0.00 0.00 2.29
279 280 6.367374 AAAGGAAAAAGGACAAACAGGAAA 57.633 33.333 0.00 0.00 0.00 3.13
280 281 6.367374 AAAAGGAAAAAGGACAAACAGGAA 57.633 33.333 0.00 0.00 0.00 3.36
281 282 6.367374 AAAAAGGAAAAAGGACAAACAGGA 57.633 33.333 0.00 0.00 0.00 3.86
282 283 8.731275 ATTAAAAAGGAAAAAGGACAAACAGG 57.269 30.769 0.00 0.00 0.00 4.00
397 401 7.933728 TCATGAACACACTTTGAATTTGATG 57.066 32.000 0.00 0.00 0.00 3.07
399 403 8.034215 AGTTTCATGAACACACTTTGAATTTGA 58.966 29.630 7.89 0.00 40.84 2.69
402 406 9.868277 TTTAGTTTCATGAACACACTTTGAATT 57.132 25.926 14.74 0.00 40.84 2.17
534 538 8.474025 TGACCAAATTTTGAACACTATGAACTT 58.526 29.630 10.72 0.00 0.00 2.66
535 539 8.006298 TGACCAAATTTTGAACACTATGAACT 57.994 30.769 10.72 0.00 0.00 3.01
536 540 7.096065 GCTGACCAAATTTTGAACACTATGAAC 60.096 37.037 10.72 0.00 0.00 3.18
539 543 5.343058 CGCTGACCAAATTTTGAACACTATG 59.657 40.000 10.72 1.11 0.00 2.23
540 544 5.009610 ACGCTGACCAAATTTTGAACACTAT 59.990 36.000 10.72 0.00 0.00 2.12
541 545 4.336993 ACGCTGACCAAATTTTGAACACTA 59.663 37.500 10.72 0.00 0.00 2.74
542 546 3.130340 ACGCTGACCAAATTTTGAACACT 59.870 39.130 10.72 0.00 0.00 3.55
551 555 8.705048 TTTTAAAAAGTTACGCTGACCAAATT 57.295 26.923 0.00 0.00 0.00 1.82
559 563 7.593273 TGATGACCATTTTAAAAAGTTACGCTG 59.407 33.333 4.44 0.00 0.00 5.18
596 600 9.820725 TGAACTTTTTGAAAGATGAATGAACAT 57.179 25.926 7.37 0.00 0.00 2.71
677 693 3.531073 GCGTTTGGGCCATGAATTT 57.469 47.368 7.26 0.00 0.00 1.82
753 773 2.401766 CCACTGCCGGCTGTCATTC 61.402 63.158 33.24 0.00 0.00 2.67
822 842 1.689959 GCGGTTTGCATTGAAGACAG 58.310 50.000 0.00 0.00 45.45 3.51
839 859 3.242220 GCATGTAGAACTTCAGTGATGCG 60.242 47.826 5.95 0.00 0.00 4.73
849 869 1.628846 AGGTTCGGGCATGTAGAACTT 59.371 47.619 20.74 14.89 42.60 2.66
858 878 2.125269 GCGTGTAGGTTCGGGCAT 60.125 61.111 0.00 0.00 0.00 4.40
860 880 4.729856 ACGCGTGTAGGTTCGGGC 62.730 66.667 12.93 0.00 42.20 6.13
912 932 4.223032 AGATTTCTCTTTCGACCTTGGCTA 59.777 41.667 0.00 0.00 0.00 3.93
914 934 3.339141 AGATTTCTCTTTCGACCTTGGC 58.661 45.455 0.00 0.00 0.00 4.52
919 939 5.400703 ACGAGTAAGATTTCTCTTTCGACC 58.599 41.667 13.41 0.00 41.23 4.79
923 943 6.157211 TGTGGACGAGTAAGATTTCTCTTTC 58.843 40.000 0.00 0.00 41.91 2.62
974 994 0.107993 TGAGGCTCTGAAAGATGGCG 60.108 55.000 16.72 0.00 45.62 5.69
989 1009 1.450312 GGCGACATGGGACTTGAGG 60.450 63.158 0.00 0.00 0.00 3.86
992 1012 1.450312 GAGGGCGACATGGGACTTG 60.450 63.158 0.00 0.00 0.00 3.16
1022 1042 1.227853 GTGGTTCCTGGAGCGTGTT 60.228 57.895 4.38 0.00 0.00 3.32
1024 1044 1.669115 CTGTGGTTCCTGGAGCGTG 60.669 63.158 4.38 0.00 0.00 5.34
1032 1052 2.338984 GACGACGCTGTGGTTCCT 59.661 61.111 0.00 0.00 0.00 3.36
1105 1134 2.519780 GGAGAGGACGAGGGCGAT 60.520 66.667 0.00 0.00 41.64 4.58
1236 1265 4.451150 GTCCGATCCAGTGGCGCA 62.451 66.667 10.83 0.00 0.00 6.09
1293 1322 1.945447 CTCCTCCTCCTCCTCCCAT 59.055 63.158 0.00 0.00 0.00 4.00
1296 1325 1.760480 GTGCTCCTCCTCCTCCTCC 60.760 68.421 0.00 0.00 0.00 4.30
1299 1328 3.151022 CCGTGCTCCTCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
1332 1361 3.883744 CTCCCGGCTGCGTGTTTCT 62.884 63.158 0.00 0.00 0.00 2.52
1400 1429 1.202348 ACCGACGATCTTGCTCATCAG 60.202 52.381 0.00 0.00 0.00 2.90
1423 1452 0.395862 TTCCCAGTTTCCGCCAACAA 60.396 50.000 0.00 0.00 0.00 2.83
1487 1516 1.672356 AGCCGAAAACAGAGCGCAT 60.672 52.632 11.47 0.00 0.00 4.73
1491 1520 0.663153 ACAACAGCCGAAAACAGAGC 59.337 50.000 0.00 0.00 0.00 4.09
1604 1636 2.066262 CATCGTGTGTACTGTTCACCC 58.934 52.381 13.85 2.89 35.25 4.61
1619 1654 1.277842 TGAACCTGTATGTGCCATCGT 59.722 47.619 0.00 0.00 0.00 3.73
1645 1680 4.021229 ACATCGTAATCACACTACCCTGA 58.979 43.478 0.00 0.00 0.00 3.86
1688 1723 0.962356 AATCGAACCTTGCAGCCCAG 60.962 55.000 0.00 0.00 0.00 4.45
1702 1737 0.605319 GTGTGGCCCAGAACAATCGA 60.605 55.000 0.00 0.00 0.00 3.59
1715 1750 1.305201 TTTTCTCAGGTTCGTGTGGC 58.695 50.000 0.00 0.00 0.00 5.01
1716 1751 2.286184 CGTTTTTCTCAGGTTCGTGTGG 60.286 50.000 0.00 0.00 0.00 4.17
1719 1754 1.263217 CCCGTTTTTCTCAGGTTCGTG 59.737 52.381 0.00 0.00 0.00 4.35
1722 1757 1.607148 CACCCCGTTTTTCTCAGGTTC 59.393 52.381 0.00 0.00 0.00 3.62
1723 1758 1.064240 ACACCCCGTTTTTCTCAGGTT 60.064 47.619 0.00 0.00 0.00 3.50
1724 1759 0.549469 ACACCCCGTTTTTCTCAGGT 59.451 50.000 0.00 0.00 0.00 4.00
1725 1760 0.951558 CACACCCCGTTTTTCTCAGG 59.048 55.000 0.00 0.00 0.00 3.86
1726 1761 1.333619 CACACACCCCGTTTTTCTCAG 59.666 52.381 0.00 0.00 0.00 3.35
1727 1762 1.384525 CACACACCCCGTTTTTCTCA 58.615 50.000 0.00 0.00 0.00 3.27
1728 1763 0.666374 CCACACACCCCGTTTTTCTC 59.334 55.000 0.00 0.00 0.00 2.87
1730 1765 0.818938 AACCACACACCCCGTTTTTC 59.181 50.000 0.00 0.00 0.00 2.29
1731 1766 0.818938 GAACCACACACCCCGTTTTT 59.181 50.000 0.00 0.00 0.00 1.94
1732 1767 0.033894 AGAACCACACACCCCGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
1733 1768 0.750182 CAGAACCACACACCCCGTTT 60.750 55.000 0.00 0.00 0.00 3.60
1734 1769 1.153046 CAGAACCACACACCCCGTT 60.153 57.895 0.00 0.00 0.00 4.44
1735 1770 2.508928 CAGAACCACACACCCCGT 59.491 61.111 0.00 0.00 0.00 5.28
1736 1771 2.978010 GCAGAACCACACACCCCG 60.978 66.667 0.00 0.00 0.00 5.73
1738 1773 2.597510 GGGCAGAACCACACACCC 60.598 66.667 0.00 0.00 42.05 4.61
1739 1774 1.898574 CAGGGCAGAACCACACACC 60.899 63.158 0.00 0.00 42.05 4.16
1771 1808 0.032615 AGAGATCAGAGCGGTTCCCT 60.033 55.000 0.00 0.00 0.00 4.20
1852 1890 0.318445 GTACGCCACTTGTCACGACT 60.318 55.000 0.00 0.00 0.00 4.18
1882 1920 1.272490 CTCCTAGGTTGCGACAAGTGA 59.728 52.381 9.08 2.46 0.00 3.41
1936 1977 4.751098 ACGCACGGTTTAAGAGATAAAACA 59.249 37.500 0.00 0.00 40.57 2.83
2157 2201 4.807304 GGTTTTACTTTCACGAGAGACACA 59.193 41.667 0.00 0.00 0.00 3.72
2161 2205 4.046462 CACGGTTTTACTTTCACGAGAGA 58.954 43.478 0.00 0.00 0.00 3.10
2212 2261 5.448632 GCCTCTCAGAAACGAAAGAAAAACA 60.449 40.000 0.00 0.00 0.00 2.83
2219 2270 1.457303 CGTGCCTCTCAGAAACGAAAG 59.543 52.381 0.00 0.00 36.38 2.62
2357 2413 3.694734 CACAGTTGTGCTTTCGTGAAAT 58.305 40.909 0.00 0.00 39.39 2.17
2375 2431 2.738521 GCTTTCGCGAGAGGCACA 60.739 61.111 25.84 0.00 43.84 4.57
2432 2491 8.977412 TGTCTCTAGAAAAGGGAAAAACAAAAT 58.023 29.630 0.00 0.00 36.09 1.82
2449 2508 1.001746 AGTCACGACCGTGTCTCTAGA 59.998 52.381 20.04 0.00 45.55 2.43
2456 2515 1.947642 GCGAAAGTCACGACCGTGT 60.948 57.895 20.04 3.03 45.55 4.49
2556 2618 0.882927 CCGTGCCACTCGAAAAAGGA 60.883 55.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.