Multiple sequence alignment - TraesCS5A01G250900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G250900 chr5A 100.000 2459 0 0 1 2459 466575236 466572778 0.000000e+00 4542
1 TraesCS5A01G250900 chr5D 92.599 1878 91 25 56 1922 365085220 365083380 0.000000e+00 2654
2 TraesCS5A01G250900 chr5D 97.162 458 11 1 2002 2459 365083383 365082928 0.000000e+00 773
3 TraesCS5A01G250900 chr5D 92.708 96 6 1 1915 2010 240428036 240428130 1.190000e-28 137
4 TraesCS5A01G250900 chr5B 93.292 1133 65 7 814 1940 431063231 431062104 0.000000e+00 1661
5 TraesCS5A01G250900 chr5B 92.096 582 20 11 77 654 431064160 431063601 0.000000e+00 797
6 TraesCS5A01G250900 chr5B 91.579 475 25 7 1986 2457 431062016 431061554 2.060000e-180 641
7 TraesCS5A01G250900 chr7D 96.552 87 3 0 1921 2007 116592584 116592498 7.090000e-31 145
8 TraesCS5A01G250900 chr2D 95.556 90 3 1 1917 2005 449513666 449513577 2.550000e-30 143
9 TraesCS5A01G250900 chr2D 89.720 107 7 4 1899 2005 15683002 15682900 1.530000e-27 134
10 TraesCS5A01G250900 chr4B 92.000 100 6 1 1909 2006 643774346 643774247 3.300000e-29 139
11 TraesCS5A01G250900 chr4B 88.679 106 12 0 1912 2017 23660877 23660772 1.980000e-26 130
12 TraesCS5A01G250900 chr6A 91.089 101 9 0 1906 2006 469017542 469017642 1.190000e-28 137
13 TraesCS5A01G250900 chr1D 91.262 103 6 3 1911 2012 409047044 409047144 1.190000e-28 137
14 TraesCS5A01G250900 chr3D 90.291 103 8 2 1920 2021 562693618 562693517 1.530000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G250900 chr5A 466572778 466575236 2458 True 4542.0 4542 100.000000 1 2459 1 chr5A.!!$R1 2458
1 TraesCS5A01G250900 chr5D 365082928 365085220 2292 True 1713.5 2654 94.880500 56 2459 2 chr5D.!!$R1 2403
2 TraesCS5A01G250900 chr5B 431061554 431064160 2606 True 1033.0 1661 92.322333 77 2457 3 chr5B.!!$R1 2380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 522 0.033699 GCAAAATGCCTCCTCCTCCT 60.034 55.0 0.0 0.0 37.42 3.69 F
748 756 0.178998 CCCCCTCTCATGCAATCCAG 60.179 60.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 1614 0.037232 ACTTGGTAAGCGTCTCAGCC 60.037 55.0 0.0 0.0 38.01 4.85 R
1989 2281 0.042131 ACAATACTCCCTCCGTCCCA 59.958 55.0 0.0 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.902938 TCATGTTCCAATCAACCGCA 58.097 45.000 0.00 0.00 0.00 5.69
22 23 2.445427 TCATGTTCCAATCAACCGCAT 58.555 42.857 0.00 0.00 0.00 4.73
23 24 2.423185 TCATGTTCCAATCAACCGCATC 59.577 45.455 0.00 0.00 0.00 3.91
24 25 2.198827 TGTTCCAATCAACCGCATCT 57.801 45.000 0.00 0.00 0.00 2.90
25 26 2.083774 TGTTCCAATCAACCGCATCTC 58.916 47.619 0.00 0.00 0.00 2.75
26 27 2.083774 GTTCCAATCAACCGCATCTCA 58.916 47.619 0.00 0.00 0.00 3.27
27 28 1.737838 TCCAATCAACCGCATCTCAC 58.262 50.000 0.00 0.00 0.00 3.51
28 29 0.734889 CCAATCAACCGCATCTCACC 59.265 55.000 0.00 0.00 0.00 4.02
29 30 1.452110 CAATCAACCGCATCTCACCA 58.548 50.000 0.00 0.00 0.00 4.17
30 31 2.019249 CAATCAACCGCATCTCACCAT 58.981 47.619 0.00 0.00 0.00 3.55
31 32 3.205338 CAATCAACCGCATCTCACCATA 58.795 45.455 0.00 0.00 0.00 2.74
32 33 3.777106 ATCAACCGCATCTCACCATAT 57.223 42.857 0.00 0.00 0.00 1.78
33 34 3.111853 TCAACCGCATCTCACCATATC 57.888 47.619 0.00 0.00 0.00 1.63
34 35 2.146342 CAACCGCATCTCACCATATCC 58.854 52.381 0.00 0.00 0.00 2.59
35 36 1.423584 ACCGCATCTCACCATATCCA 58.576 50.000 0.00 0.00 0.00 3.41
36 37 1.070758 ACCGCATCTCACCATATCCAC 59.929 52.381 0.00 0.00 0.00 4.02
37 38 1.609061 CCGCATCTCACCATATCCACC 60.609 57.143 0.00 0.00 0.00 4.61
38 39 1.070601 CGCATCTCACCATATCCACCA 59.929 52.381 0.00 0.00 0.00 4.17
39 40 2.498167 GCATCTCACCATATCCACCAC 58.502 52.381 0.00 0.00 0.00 4.16
40 41 2.158769 GCATCTCACCATATCCACCACA 60.159 50.000 0.00 0.00 0.00 4.17
41 42 3.736720 CATCTCACCATATCCACCACAG 58.263 50.000 0.00 0.00 0.00 3.66
42 43 3.114643 TCTCACCATATCCACCACAGA 57.885 47.619 0.00 0.00 0.00 3.41
43 44 3.657610 TCTCACCATATCCACCACAGAT 58.342 45.455 0.00 0.00 0.00 2.90
44 45 3.643320 TCTCACCATATCCACCACAGATC 59.357 47.826 0.00 0.00 0.00 2.75
45 46 2.365293 TCACCATATCCACCACAGATCG 59.635 50.000 0.00 0.00 0.00 3.69
46 47 2.365293 CACCATATCCACCACAGATCGA 59.635 50.000 0.00 0.00 0.00 3.59
47 48 3.007290 CACCATATCCACCACAGATCGAT 59.993 47.826 0.00 0.00 0.00 3.59
48 49 3.007290 ACCATATCCACCACAGATCGATG 59.993 47.826 0.54 0.00 0.00 3.84
49 50 2.820059 TATCCACCACAGATCGATGC 57.180 50.000 0.54 0.00 0.00 3.91
50 51 1.126488 ATCCACCACAGATCGATGCT 58.874 50.000 0.54 0.00 0.00 3.79
51 52 0.461548 TCCACCACAGATCGATGCTC 59.538 55.000 0.54 0.00 0.00 4.26
52 53 0.463204 CCACCACAGATCGATGCTCT 59.537 55.000 0.54 0.00 0.00 4.09
53 54 1.134580 CCACCACAGATCGATGCTCTT 60.135 52.381 0.54 0.00 0.00 2.85
54 55 2.101415 CCACCACAGATCGATGCTCTTA 59.899 50.000 0.54 0.00 0.00 2.10
63 64 0.647410 CGATGCTCTTACCTGCAACG 59.353 55.000 0.00 0.00 45.55 4.10
95 96 1.197036 GCTTACCAAGAAGGCAACGAC 59.803 52.381 0.00 0.00 43.14 4.34
117 118 1.085091 GAGTGGCAGCACATGAGAAG 58.915 55.000 0.00 0.00 0.00 2.85
174 178 2.549633 ACATGTAGCACGTACGTACC 57.450 50.000 22.34 14.90 33.87 3.34
364 369 9.624373 ATCTAATGCTAATAAATCATGGGCTAG 57.376 33.333 0.00 0.00 0.00 3.42
366 371 5.246981 TGCTAATAAATCATGGGCTAGCT 57.753 39.130 15.72 0.00 33.17 3.32
378 384 1.147153 GCTAGCTAACCCAGGCAGG 59.853 63.158 7.70 0.00 37.03 4.85
407 415 0.037447 GCATCTAATCTCCCCAGGCC 59.963 60.000 0.00 0.00 0.00 5.19
408 416 0.322975 CATCTAATCTCCCCAGGCCG 59.677 60.000 0.00 0.00 0.00 6.13
409 417 0.838122 ATCTAATCTCCCCAGGCCGG 60.838 60.000 0.00 0.00 0.00 6.13
410 418 3.168528 TAATCTCCCCAGGCCGGC 61.169 66.667 21.18 21.18 0.00 6.13
503 511 0.111001 CTGCGTTGCAAGCAAAATGC 60.111 50.000 19.41 13.64 44.67 3.56
504 512 1.204813 GCGTTGCAAGCAAAATGCC 59.795 52.632 9.32 0.00 46.52 4.40
506 514 0.785979 CGTTGCAAGCAAAATGCCTC 59.214 50.000 9.32 0.00 46.52 4.70
507 515 1.150827 GTTGCAAGCAAAATGCCTCC 58.849 50.000 9.32 0.00 46.52 4.30
508 516 1.050204 TTGCAAGCAAAATGCCTCCT 58.950 45.000 4.79 0.00 46.52 3.69
509 517 0.604578 TGCAAGCAAAATGCCTCCTC 59.395 50.000 0.00 0.00 46.52 3.71
511 519 1.553706 CAAGCAAAATGCCTCCTCCT 58.446 50.000 0.00 0.00 46.52 3.69
512 520 1.475682 CAAGCAAAATGCCTCCTCCTC 59.524 52.381 0.00 0.00 46.52 3.71
514 522 0.033699 GCAAAATGCCTCCTCCTCCT 60.034 55.000 0.00 0.00 37.42 3.69
515 523 1.760192 CAAAATGCCTCCTCCTCCTG 58.240 55.000 0.00 0.00 0.00 3.86
516 524 0.033699 AAAATGCCTCCTCCTCCTGC 60.034 55.000 0.00 0.00 0.00 4.85
517 525 0.918310 AAATGCCTCCTCCTCCTGCT 60.918 55.000 0.00 0.00 0.00 4.24
519 527 3.160748 GCCTCCTCCTCCTGCTCC 61.161 72.222 0.00 0.00 0.00 4.70
520 528 2.695597 CCTCCTCCTCCTGCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
521 529 1.457455 CCTCCTCCTCCTGCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
522 530 1.457455 CTCCTCCTCCTGCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
523 531 1.938596 TCCTCCTCCTGCTCCTCCT 60.939 63.158 0.00 0.00 0.00 3.69
524 532 1.457455 CCTCCTCCTGCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
525 533 1.457455 CTCCTCCTGCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
526 534 1.938596 TCCTCCTGCTCCTCCTCCT 60.939 63.158 0.00 0.00 0.00 3.69
527 535 1.457455 CCTCCTGCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
528 536 1.457455 CTCCTGCTCCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
529 537 2.445654 CCTGCTCCTCCTCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
530 538 2.695597 CTGCTCCTCCTCCTCCCT 59.304 66.667 0.00 0.00 0.00 4.20
531 539 1.002792 CTGCTCCTCCTCCTCCCTT 59.997 63.158 0.00 0.00 0.00 3.95
532 540 1.306482 TGCTCCTCCTCCTCCCTTG 60.306 63.158 0.00 0.00 0.00 3.61
533 541 2.069430 GCTCCTCCTCCTCCCTTGG 61.069 68.421 0.00 0.00 0.00 3.61
534 542 2.041265 TCCTCCTCCTCCCTTGGC 59.959 66.667 0.00 0.00 0.00 4.52
535 543 2.041928 CCTCCTCCTCCCTTGGCT 59.958 66.667 0.00 0.00 0.00 4.75
606 614 0.326264 ATGGGTGACAGTTGGAGCTC 59.674 55.000 4.71 4.71 0.00 4.09
651 659 4.380867 CCATTTAAACACACTGCCATCCTC 60.381 45.833 0.00 0.00 0.00 3.71
683 691 2.854032 ACACACCTCCACCCCCAG 60.854 66.667 0.00 0.00 0.00 4.45
704 712 3.455910 AGACACACCATAGCCATACACAT 59.544 43.478 0.00 0.00 0.00 3.21
746 754 4.916358 CCCCCTCTCATGCAATCC 57.084 61.111 0.00 0.00 0.00 3.01
747 755 1.925120 CCCCCTCTCATGCAATCCA 59.075 57.895 0.00 0.00 0.00 3.41
748 756 0.178998 CCCCCTCTCATGCAATCCAG 60.179 60.000 0.00 0.00 0.00 3.86
749 757 0.822532 CCCCTCTCATGCAATCCAGC 60.823 60.000 0.00 0.00 0.00 4.85
750 758 0.822532 CCCTCTCATGCAATCCAGCC 60.823 60.000 0.00 0.00 0.00 4.85
751 759 0.822532 CCTCTCATGCAATCCAGCCC 60.823 60.000 0.00 0.00 0.00 5.19
767 1051 0.472044 GCCCCTCCCTCTGAATTCTC 59.528 60.000 7.05 0.00 0.00 2.87
768 1052 1.974197 GCCCCTCCCTCTGAATTCTCT 60.974 57.143 7.05 0.00 0.00 3.10
769 1053 1.767681 CCCCTCCCTCTGAATTCTCTG 59.232 57.143 7.05 0.00 0.00 3.35
774 1058 3.370104 TCCCTCTGAATTCTCTGTCCTC 58.630 50.000 7.05 0.00 0.00 3.71
781 1065 5.777223 TCTGAATTCTCTGTCCTCTGAAGAA 59.223 40.000 7.05 0.00 0.00 2.52
788 1072 1.898472 TGTCCTCTGAAGAAGGCTGAG 59.102 52.381 0.00 0.00 0.00 3.35
792 1076 1.001746 CTCTGAAGAAGGCTGAGTGCA 59.998 52.381 0.00 0.00 45.15 4.57
833 1117 1.339631 CGGGTTATGGGTGCTCAAGAA 60.340 52.381 0.00 0.00 0.00 2.52
849 1133 6.791887 CTCAAGAAGCATAGACAAGAACAA 57.208 37.500 0.00 0.00 0.00 2.83
850 1134 6.545504 TCAAGAAGCATAGACAAGAACAAC 57.454 37.500 0.00 0.00 0.00 3.32
851 1135 6.291377 TCAAGAAGCATAGACAAGAACAACT 58.709 36.000 0.00 0.00 0.00 3.16
879 1163 1.199327 CAGTGCTGCATTGTTGAGGAG 59.801 52.381 16.02 0.00 0.00 3.69
893 1177 4.222810 TGTTGAGGAGATTCAGATTTCGGA 59.777 41.667 0.00 0.00 0.00 4.55
913 1197 4.327680 GGAAGAAGCATAAGAGTTGGTGT 58.672 43.478 0.00 0.00 0.00 4.16
928 1212 1.071542 TGGTGTTCGCAGAATTCTCCA 59.928 47.619 4.57 5.34 45.90 3.86
936 1220 2.478831 GCAGAATTCTCCATCGACCTC 58.521 52.381 4.57 0.00 0.00 3.85
946 1230 0.526524 CATCGACCTCGTTCTGCCTC 60.527 60.000 0.00 0.00 40.80 4.70
947 1231 0.681564 ATCGACCTCGTTCTGCCTCT 60.682 55.000 0.00 0.00 40.80 3.69
948 1232 1.137825 CGACCTCGTTCTGCCTCTC 59.862 63.158 0.00 0.00 34.11 3.20
952 1236 1.181786 CCTCGTTCTGCCTCTCTTCT 58.818 55.000 0.00 0.00 0.00 2.85
959 1247 0.327591 CTGCCTCTCTTCTTTGGCCT 59.672 55.000 3.32 0.00 44.32 5.19
965 1253 4.148079 CCTCTCTTCTTTGGCCTTTCTTT 58.852 43.478 3.32 0.00 0.00 2.52
981 1269 6.514212 GCCTTTCTTTTCTCTCTTTTGGTCTC 60.514 42.308 0.00 0.00 0.00 3.36
984 1272 3.402628 TTTCTCTCTTTTGGTCTCCCG 57.597 47.619 0.00 0.00 0.00 5.14
989 1277 1.377333 CTTTTGGTCTCCCGCTCCC 60.377 63.158 0.00 0.00 0.00 4.30
990 1278 3.248446 TTTTGGTCTCCCGCTCCCG 62.248 63.158 0.00 0.00 0.00 5.14
1056 1344 3.418995 AGAGTGCAACAGCAATGAATCT 58.581 40.909 0.00 0.00 41.43 2.40
1155 1443 0.914644 ATGGCAGTGGCTACATCACT 59.085 50.000 18.53 0.00 45.29 3.41
1173 1461 2.235898 CACTGAGAGGAGGAAAGGGAAG 59.764 54.545 0.00 0.00 0.00 3.46
1326 1614 2.821378 TGAACATGGCAAGGATGAACAG 59.179 45.455 0.00 0.00 0.00 3.16
1335 1623 0.534412 AGGATGAACAGGCTGAGACG 59.466 55.000 23.66 0.00 0.00 4.18
1353 1641 1.336609 ACGCTTACCAAGTTCTCGACC 60.337 52.381 0.00 0.00 0.00 4.79
1395 1683 0.685660 AGGTGAAGAAAGGGGACGAC 59.314 55.000 0.00 0.00 0.00 4.34
1459 1747 7.164230 TCAAGAACAAGCTTCTTTTGGTAAA 57.836 32.000 0.00 0.00 36.69 2.01
1460 1748 7.257722 TCAAGAACAAGCTTCTTTTGGTAAAG 58.742 34.615 0.00 0.00 41.74 1.85
1479 1767 4.766404 AAGGATGTAAAAACCTTGCTCG 57.234 40.909 0.00 0.00 41.64 5.03
1628 1919 3.379372 CCTATGCAAATCTGTCACCCTTG 59.621 47.826 0.00 0.00 0.00 3.61
1629 1920 2.655090 TGCAAATCTGTCACCCTTGA 57.345 45.000 0.00 0.00 0.00 3.02
1798 2089 0.114954 TGGCCTTCTGCTTTCCCAAT 59.885 50.000 3.32 0.00 40.92 3.16
1800 2091 2.024080 TGGCCTTCTGCTTTCCCAATAT 60.024 45.455 3.32 0.00 40.92 1.28
1801 2092 3.033909 GGCCTTCTGCTTTCCCAATATT 58.966 45.455 0.00 0.00 40.92 1.28
1872 2164 9.929180 AAGCGTATATAGAAATCTGCTTTATCA 57.071 29.630 0.00 0.00 38.16 2.15
1919 2211 7.715265 ACGTTTGGTGAGCAATCTAATATAG 57.285 36.000 0.00 0.00 0.00 1.31
1920 2212 7.272978 ACGTTTGGTGAGCAATCTAATATAGT 58.727 34.615 0.00 0.00 0.00 2.12
1921 2213 8.418662 ACGTTTGGTGAGCAATCTAATATAGTA 58.581 33.333 0.00 0.00 0.00 1.82
1922 2214 8.700644 CGTTTGGTGAGCAATCTAATATAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
1923 2215 9.765795 GTTTGGTGAGCAATCTAATATAGTACT 57.234 33.333 0.00 0.00 0.00 2.73
1924 2216 9.982651 TTTGGTGAGCAATCTAATATAGTACTC 57.017 33.333 0.00 0.00 0.00 2.59
1925 2217 8.123639 TGGTGAGCAATCTAATATAGTACTCC 57.876 38.462 0.00 0.00 0.00 3.85
1926 2218 7.178628 TGGTGAGCAATCTAATATAGTACTCCC 59.821 40.741 0.00 0.00 0.00 4.30
1927 2219 7.397761 GGTGAGCAATCTAATATAGTACTCCCT 59.602 40.741 0.00 0.00 0.00 4.20
1928 2220 8.463607 GTGAGCAATCTAATATAGTACTCCCTC 58.536 40.741 0.00 0.00 0.00 4.30
1929 2221 8.394822 TGAGCAATCTAATATAGTACTCCCTCT 58.605 37.037 0.00 0.00 0.00 3.69
1930 2222 8.588290 AGCAATCTAATATAGTACTCCCTCTG 57.412 38.462 0.00 0.00 0.00 3.35
1931 2223 8.174085 AGCAATCTAATATAGTACTCCCTCTGT 58.826 37.037 0.00 0.00 0.00 3.41
1932 2224 8.463607 GCAATCTAATATAGTACTCCCTCTGTC 58.536 40.741 0.00 0.00 0.00 3.51
1933 2225 8.670135 CAATCTAATATAGTACTCCCTCTGTCG 58.330 40.741 0.00 0.00 0.00 4.35
1934 2226 6.171921 TCTAATATAGTACTCCCTCTGTCGC 58.828 44.000 0.00 0.00 0.00 5.19
1935 2227 2.730934 ATAGTACTCCCTCTGTCGCA 57.269 50.000 0.00 0.00 0.00 5.10
1936 2228 2.730934 TAGTACTCCCTCTGTCGCAT 57.269 50.000 0.00 0.00 0.00 4.73
1937 2229 2.730934 AGTACTCCCTCTGTCGCATA 57.269 50.000 0.00 0.00 0.00 3.14
1938 2230 3.014304 AGTACTCCCTCTGTCGCATAA 57.986 47.619 0.00 0.00 0.00 1.90
1939 2231 3.567397 AGTACTCCCTCTGTCGCATAAT 58.433 45.455 0.00 0.00 0.00 1.28
1940 2232 4.726583 AGTACTCCCTCTGTCGCATAATA 58.273 43.478 0.00 0.00 0.00 0.98
1941 2233 5.326069 AGTACTCCCTCTGTCGCATAATAT 58.674 41.667 0.00 0.00 0.00 1.28
1942 2234 6.482524 AGTACTCCCTCTGTCGCATAATATA 58.517 40.000 0.00 0.00 0.00 0.86
1943 2235 6.946583 AGTACTCCCTCTGTCGCATAATATAA 59.053 38.462 0.00 0.00 0.00 0.98
1944 2236 6.274157 ACTCCCTCTGTCGCATAATATAAG 57.726 41.667 0.00 0.00 0.00 1.73
1945 2237 6.010850 ACTCCCTCTGTCGCATAATATAAGA 58.989 40.000 0.00 0.00 0.00 2.10
1946 2238 6.151985 ACTCCCTCTGTCGCATAATATAAGAG 59.848 42.308 0.00 0.00 0.00 2.85
1947 2239 6.010850 TCCCTCTGTCGCATAATATAAGAGT 58.989 40.000 0.00 0.00 0.00 3.24
1948 2240 6.071896 TCCCTCTGTCGCATAATATAAGAGTG 60.072 42.308 0.00 0.00 0.00 3.51
1949 2241 6.294787 CCCTCTGTCGCATAATATAAGAGTGT 60.295 42.308 0.00 0.00 0.00 3.55
1950 2242 7.148641 CCTCTGTCGCATAATATAAGAGTGTT 58.851 38.462 0.00 0.00 0.00 3.32
1951 2243 7.653713 CCTCTGTCGCATAATATAAGAGTGTTT 59.346 37.037 0.00 0.00 0.00 2.83
1952 2244 8.942338 TCTGTCGCATAATATAAGAGTGTTTT 57.058 30.769 0.00 0.00 0.00 2.43
1953 2245 9.378551 TCTGTCGCATAATATAAGAGTGTTTTT 57.621 29.630 0.00 0.00 0.00 1.94
1954 2246 9.425893 CTGTCGCATAATATAAGAGTGTTTTTG 57.574 33.333 0.00 0.00 0.00 2.44
1955 2247 9.157104 TGTCGCATAATATAAGAGTGTTTTTGA 57.843 29.630 0.00 0.00 0.00 2.69
1956 2248 9.422196 GTCGCATAATATAAGAGTGTTTTTGAC 57.578 33.333 0.00 0.00 0.00 3.18
1957 2249 9.157104 TCGCATAATATAAGAGTGTTTTTGACA 57.843 29.630 0.00 0.00 35.42 3.58
1980 2272 6.787085 ACTAGTGTAGTGTCAAAATTGCTC 57.213 37.500 0.00 0.00 37.69 4.26
1981 2273 6.525629 ACTAGTGTAGTGTCAAAATTGCTCT 58.474 36.000 0.00 0.00 37.69 4.09
1982 2274 6.992715 ACTAGTGTAGTGTCAAAATTGCTCTT 59.007 34.615 0.00 0.00 37.69 2.85
1983 2275 8.148351 ACTAGTGTAGTGTCAAAATTGCTCTTA 58.852 33.333 0.00 0.00 37.69 2.10
1984 2276 7.986085 AGTGTAGTGTCAAAATTGCTCTTAT 57.014 32.000 0.00 0.00 0.00 1.73
1986 2278 9.672673 AGTGTAGTGTCAAAATTGCTCTTATAT 57.327 29.630 0.00 0.00 0.00 0.86
1992 2284 9.683069 GTGTCAAAATTGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
1993 2285 9.639563 TGTCAAAATTGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
1994 2286 9.899226 GTCAAAATTGCTCTTATATTATGGGAC 57.101 33.333 0.00 0.00 0.00 4.46
1995 2287 8.783093 TCAAAATTGCTCTTATATTATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
1996 2288 7.687941 AAATTGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
1997 2289 6.620877 ATTGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
1998 2290 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
1999 2291 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2000 2292 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2111 2528 5.888161 ACCCTTGAGTAAAGCAAATCCTATG 59.112 40.000 0.00 0.00 34.24 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.615155 TGCGGTTGATTGGAACATGATA 58.385 40.909 0.00 0.00 39.30 2.15
1 2 2.445427 TGCGGTTGATTGGAACATGAT 58.555 42.857 0.00 0.00 39.30 2.45
2 3 1.902938 TGCGGTTGATTGGAACATGA 58.097 45.000 0.00 0.00 39.30 3.07
3 4 2.424601 AGATGCGGTTGATTGGAACATG 59.575 45.455 0.00 0.00 39.30 3.21
4 5 2.684881 GAGATGCGGTTGATTGGAACAT 59.315 45.455 0.00 0.00 39.30 2.71
5 6 2.083774 GAGATGCGGTTGATTGGAACA 58.916 47.619 0.00 0.00 0.00 3.18
6 7 2.083774 TGAGATGCGGTTGATTGGAAC 58.916 47.619 0.00 0.00 0.00 3.62
7 8 2.083774 GTGAGATGCGGTTGATTGGAA 58.916 47.619 0.00 0.00 0.00 3.53
8 9 1.678728 GGTGAGATGCGGTTGATTGGA 60.679 52.381 0.00 0.00 0.00 3.53
9 10 0.734889 GGTGAGATGCGGTTGATTGG 59.265 55.000 0.00 0.00 0.00 3.16
10 11 1.452110 TGGTGAGATGCGGTTGATTG 58.548 50.000 0.00 0.00 0.00 2.67
11 12 2.425143 ATGGTGAGATGCGGTTGATT 57.575 45.000 0.00 0.00 0.00 2.57
12 13 3.557898 GGATATGGTGAGATGCGGTTGAT 60.558 47.826 0.00 0.00 0.00 2.57
13 14 2.224281 GGATATGGTGAGATGCGGTTGA 60.224 50.000 0.00 0.00 0.00 3.18
14 15 2.146342 GGATATGGTGAGATGCGGTTG 58.854 52.381 0.00 0.00 0.00 3.77
15 16 1.768275 TGGATATGGTGAGATGCGGTT 59.232 47.619 0.00 0.00 0.00 4.44
16 17 1.070758 GTGGATATGGTGAGATGCGGT 59.929 52.381 0.00 0.00 0.00 5.68
17 18 1.609061 GGTGGATATGGTGAGATGCGG 60.609 57.143 0.00 0.00 0.00 5.69
18 19 1.070601 TGGTGGATATGGTGAGATGCG 59.929 52.381 0.00 0.00 0.00 4.73
19 20 2.158769 TGTGGTGGATATGGTGAGATGC 60.159 50.000 0.00 0.00 0.00 3.91
20 21 3.389002 TCTGTGGTGGATATGGTGAGATG 59.611 47.826 0.00 0.00 0.00 2.90
21 22 3.657610 TCTGTGGTGGATATGGTGAGAT 58.342 45.455 0.00 0.00 0.00 2.75
22 23 3.114643 TCTGTGGTGGATATGGTGAGA 57.885 47.619 0.00 0.00 0.00 3.27
23 24 3.553715 CGATCTGTGGTGGATATGGTGAG 60.554 52.174 0.00 0.00 0.00 3.51
24 25 2.365293 CGATCTGTGGTGGATATGGTGA 59.635 50.000 0.00 0.00 0.00 4.02
25 26 2.365293 TCGATCTGTGGTGGATATGGTG 59.635 50.000 0.00 0.00 0.00 4.17
26 27 2.677914 TCGATCTGTGGTGGATATGGT 58.322 47.619 0.00 0.00 0.00 3.55
27 28 3.593096 CATCGATCTGTGGTGGATATGG 58.407 50.000 0.00 0.00 0.00 2.74
28 29 2.998670 GCATCGATCTGTGGTGGATATG 59.001 50.000 0.00 0.00 0.00 1.78
29 30 2.902486 AGCATCGATCTGTGGTGGATAT 59.098 45.455 0.00 0.00 0.00 1.63
30 31 2.297315 GAGCATCGATCTGTGGTGGATA 59.703 50.000 0.00 0.00 0.00 2.59
31 32 1.069823 GAGCATCGATCTGTGGTGGAT 59.930 52.381 0.00 0.00 0.00 3.41
32 33 0.461548 GAGCATCGATCTGTGGTGGA 59.538 55.000 0.00 0.00 0.00 4.02
33 34 0.463204 AGAGCATCGATCTGTGGTGG 59.537 55.000 0.00 0.00 42.67 4.61
34 35 2.306341 AAGAGCATCGATCTGTGGTG 57.694 50.000 0.00 0.00 42.67 4.17
35 36 2.101582 GGTAAGAGCATCGATCTGTGGT 59.898 50.000 0.00 0.00 42.67 4.16
36 37 2.363680 AGGTAAGAGCATCGATCTGTGG 59.636 50.000 0.00 0.00 42.67 4.17
37 38 3.379240 CAGGTAAGAGCATCGATCTGTG 58.621 50.000 0.00 0.00 42.67 3.66
38 39 2.223923 GCAGGTAAGAGCATCGATCTGT 60.224 50.000 0.00 0.00 42.67 3.41
39 40 2.223900 TGCAGGTAAGAGCATCGATCTG 60.224 50.000 0.00 0.00 42.67 2.90
40 41 2.034878 TGCAGGTAAGAGCATCGATCT 58.965 47.619 0.00 0.00 42.67 2.75
41 42 2.515926 TGCAGGTAAGAGCATCGATC 57.484 50.000 0.00 0.00 42.67 3.69
42 43 2.555199 GTTGCAGGTAAGAGCATCGAT 58.445 47.619 0.00 0.00 42.67 3.59
43 44 2.010145 GTTGCAGGTAAGAGCATCGA 57.990 50.000 0.00 0.00 42.67 3.59
44 45 0.647410 CGTTGCAGGTAAGAGCATCG 59.353 55.000 0.00 0.00 44.20 3.84
45 46 1.009829 CCGTTGCAGGTAAGAGCATC 58.990 55.000 0.00 0.00 40.94 3.91
46 47 1.026718 GCCGTTGCAGGTAAGAGCAT 61.027 55.000 0.00 0.00 40.94 3.79
47 48 1.671054 GCCGTTGCAGGTAAGAGCA 60.671 57.895 0.00 0.00 39.32 4.26
48 49 1.671054 TGCCGTTGCAGGTAAGAGC 60.671 57.895 0.00 0.00 44.23 4.09
49 50 4.693532 TGCCGTTGCAGGTAAGAG 57.306 55.556 0.00 0.00 44.23 2.85
63 64 0.324943 TGGTAAGCCAGAACTCTGCC 59.675 55.000 0.89 0.00 42.47 4.85
74 75 0.521735 CGTTGCCTTCTTGGTAAGCC 59.478 55.000 0.00 0.00 41.06 4.35
86 87 2.651361 CCACTCTCGTCGTTGCCT 59.349 61.111 0.00 0.00 0.00 4.75
95 96 1.079612 TCATGTGCTGCCACTCTCG 60.080 57.895 0.00 0.00 42.54 4.04
174 178 6.900568 TGTCTTTTGTTTGCTTTGGTATTG 57.099 33.333 0.00 0.00 0.00 1.90
364 369 2.439156 CTGCCTGCCTGGGTTAGC 60.439 66.667 0.00 0.00 36.00 3.09
366 371 4.047125 GCCTGCCTGCCTGGGTTA 62.047 66.667 0.00 0.00 36.00 2.85
378 384 0.950116 GATTAGATGCACCTGCCTGC 59.050 55.000 0.00 0.00 41.18 4.85
503 511 1.457455 GAGGAGCAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
504 512 1.457455 GGAGGAGCAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
506 514 1.457455 GAGGAGGAGCAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
507 515 1.457455 GGAGGAGGAGCAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
508 516 1.938596 AGGAGGAGGAGCAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
509 517 1.457455 GAGGAGGAGGAGCAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
511 519 2.693017 GGAGGAGGAGGAGCAGGA 59.307 66.667 0.00 0.00 0.00 3.86
512 520 2.445654 GGGAGGAGGAGGAGCAGG 60.446 72.222 0.00 0.00 0.00 4.85
514 522 1.306482 CAAGGGAGGAGGAGGAGCA 60.306 63.158 0.00 0.00 0.00 4.26
515 523 2.069430 CCAAGGGAGGAGGAGGAGC 61.069 68.421 0.00 0.00 0.00 4.70
516 524 2.069430 GCCAAGGGAGGAGGAGGAG 61.069 68.421 0.00 0.00 0.00 3.69
517 525 2.041265 GCCAAGGGAGGAGGAGGA 59.959 66.667 0.00 0.00 0.00 3.71
519 527 0.034670 CAAAGCCAAGGGAGGAGGAG 60.035 60.000 0.00 0.00 0.00 3.69
520 528 1.500783 CCAAAGCCAAGGGAGGAGGA 61.501 60.000 0.00 0.00 0.00 3.71
521 529 1.000396 CCAAAGCCAAGGGAGGAGG 60.000 63.158 0.00 0.00 0.00 4.30
522 530 1.680314 GCCAAAGCCAAGGGAGGAG 60.680 63.158 0.00 0.00 0.00 3.69
523 531 1.729267 AAGCCAAAGCCAAGGGAGGA 61.729 55.000 0.00 0.00 41.25 3.71
524 532 0.833409 AAAGCCAAAGCCAAGGGAGG 60.833 55.000 0.00 0.00 41.25 4.30
525 533 0.319405 CAAAGCCAAAGCCAAGGGAG 59.681 55.000 0.00 0.00 41.25 4.30
526 534 1.120795 CCAAAGCCAAAGCCAAGGGA 61.121 55.000 0.00 0.00 41.25 4.20
527 535 1.372307 CCAAAGCCAAAGCCAAGGG 59.628 57.895 0.00 0.00 41.25 3.95
528 536 0.249996 CACCAAAGCCAAAGCCAAGG 60.250 55.000 0.00 0.00 41.25 3.61
529 537 0.752054 TCACCAAAGCCAAAGCCAAG 59.248 50.000 0.00 0.00 41.25 3.61
530 538 0.463620 GTCACCAAAGCCAAAGCCAA 59.536 50.000 0.00 0.00 41.25 4.52
531 539 0.685785 TGTCACCAAAGCCAAAGCCA 60.686 50.000 0.00 0.00 41.25 4.75
532 540 0.463620 TTGTCACCAAAGCCAAAGCC 59.536 50.000 0.00 0.00 41.25 4.35
533 541 1.408702 TCTTGTCACCAAAGCCAAAGC 59.591 47.619 0.00 0.00 40.32 3.51
534 542 2.951642 TCTCTTGTCACCAAAGCCAAAG 59.048 45.455 0.00 0.00 0.00 2.77
535 543 2.951642 CTCTCTTGTCACCAAAGCCAAA 59.048 45.455 0.00 0.00 0.00 3.28
556 564 0.252197 ACCATTTGCGTACCCTCTCC 59.748 55.000 0.00 0.00 0.00 3.71
606 614 4.301027 GGGTGGCCTATCCTCGCG 62.301 72.222 3.32 0.00 32.76 5.87
651 659 0.249868 TGTGTGAAGGAACCGCAGAG 60.250 55.000 0.00 0.00 0.00 3.35
683 691 3.260475 TGTGTATGGCTATGGTGTGTC 57.740 47.619 0.00 0.00 0.00 3.67
704 712 1.497309 AATTCTTCAGGGCCGGACCA 61.497 55.000 32.91 5.34 42.05 4.02
707 715 0.991920 AAGAATTCTTCAGGGCCGGA 59.008 50.000 15.11 0.91 0.00 5.14
710 718 0.820226 GGCAAGAATTCTTCAGGGCC 59.180 55.000 23.76 23.76 36.01 5.80
734 742 1.228228 GGGGCTGGATTGCATGAGA 59.772 57.895 0.00 0.00 34.04 3.27
735 743 0.822532 GAGGGGCTGGATTGCATGAG 60.823 60.000 0.00 0.00 34.04 2.90
736 744 1.228228 GAGGGGCTGGATTGCATGA 59.772 57.895 0.00 0.00 34.04 3.07
737 745 1.831286 GGAGGGGCTGGATTGCATG 60.831 63.158 0.00 0.00 34.04 4.06
739 747 3.743017 GGGAGGGGCTGGATTGCA 61.743 66.667 0.00 0.00 34.04 4.08
740 748 3.424105 AGGGAGGGGCTGGATTGC 61.424 66.667 0.00 0.00 0.00 3.56
741 749 1.695597 AGAGGGAGGGGCTGGATTG 60.696 63.158 0.00 0.00 0.00 2.67
742 750 1.695597 CAGAGGGAGGGGCTGGATT 60.696 63.158 0.00 0.00 0.00 3.01
743 751 2.040043 CAGAGGGAGGGGCTGGAT 60.040 66.667 0.00 0.00 0.00 3.41
744 752 2.200373 ATTCAGAGGGAGGGGCTGGA 62.200 60.000 0.00 0.00 0.00 3.86
745 753 1.284841 AATTCAGAGGGAGGGGCTGG 61.285 60.000 0.00 0.00 0.00 4.85
746 754 0.182299 GAATTCAGAGGGAGGGGCTG 59.818 60.000 0.00 0.00 0.00 4.85
747 755 0.045469 AGAATTCAGAGGGAGGGGCT 59.955 55.000 8.44 0.00 0.00 5.19
748 756 0.472044 GAGAATTCAGAGGGAGGGGC 59.528 60.000 8.44 0.00 0.00 5.80
749 757 1.767681 CAGAGAATTCAGAGGGAGGGG 59.232 57.143 8.44 0.00 0.00 4.79
750 758 2.433970 GACAGAGAATTCAGAGGGAGGG 59.566 54.545 8.44 0.00 0.00 4.30
751 759 2.433970 GGACAGAGAATTCAGAGGGAGG 59.566 54.545 8.44 0.00 0.00 4.30
767 1051 1.898472 TCAGCCTTCTTCAGAGGACAG 59.102 52.381 0.00 0.00 0.00 3.51
768 1052 1.898472 CTCAGCCTTCTTCAGAGGACA 59.102 52.381 0.00 0.00 0.00 4.02
769 1053 1.899142 ACTCAGCCTTCTTCAGAGGAC 59.101 52.381 0.00 0.00 0.00 3.85
774 1058 1.440708 CTGCACTCAGCCTTCTTCAG 58.559 55.000 0.00 0.00 44.83 3.02
781 1065 1.306825 ATCCTCCTGCACTCAGCCT 60.307 57.895 0.00 0.00 44.83 4.58
788 1072 2.187946 CACCGGATCCTCCTGCAC 59.812 66.667 9.46 0.00 33.30 4.57
792 1076 1.002274 AAGAGCACCGGATCCTCCT 59.998 57.895 9.46 0.00 33.30 3.69
801 1085 0.460311 ATAACCCGAGAAGAGCACCG 59.540 55.000 0.00 0.00 0.00 4.94
833 1117 4.623932 TGGAGTTGTTCTTGTCTATGCT 57.376 40.909 0.00 0.00 0.00 3.79
840 1124 4.818546 CACTGAAGATGGAGTTGTTCTTGT 59.181 41.667 0.00 0.00 30.11 3.16
849 1133 0.689055 TGCAGCACTGAAGATGGAGT 59.311 50.000 0.81 0.00 0.00 3.85
850 1134 2.039818 ATGCAGCACTGAAGATGGAG 57.960 50.000 0.00 0.00 0.00 3.86
851 1135 2.089201 CAATGCAGCACTGAAGATGGA 58.911 47.619 0.00 0.00 0.00 3.41
879 1163 5.747951 ATGCTTCTTCCGAAATCTGAATC 57.252 39.130 0.00 0.00 0.00 2.52
893 1177 4.452455 CGAACACCAACTCTTATGCTTCTT 59.548 41.667 0.00 0.00 0.00 2.52
908 1192 1.071542 TGGAGAATTCTGCGAACACCA 59.928 47.619 20.39 12.97 37.10 4.17
913 1197 2.540515 GTCGATGGAGAATTCTGCGAA 58.459 47.619 20.39 6.01 37.10 4.70
928 1212 0.681564 AGAGGCAGAACGAGGTCGAT 60.682 55.000 6.35 0.00 43.02 3.59
936 1220 2.072298 CCAAAGAAGAGAGGCAGAACG 58.928 52.381 0.00 0.00 0.00 3.95
946 1230 5.534278 AGAGAAAAGAAAGGCCAAAGAAGAG 59.466 40.000 5.01 0.00 0.00 2.85
947 1231 5.449553 AGAGAAAAGAAAGGCCAAAGAAGA 58.550 37.500 5.01 0.00 0.00 2.87
948 1232 5.534278 AGAGAGAAAAGAAAGGCCAAAGAAG 59.466 40.000 5.01 0.00 0.00 2.85
952 1236 6.340522 CAAAAGAGAGAAAAGAAAGGCCAAA 58.659 36.000 5.01 0.00 0.00 3.28
959 1247 6.944234 GGAGACCAAAAGAGAGAAAAGAAA 57.056 37.500 0.00 0.00 0.00 2.52
984 1272 4.101448 ATGACAGGCCACGGGAGC 62.101 66.667 5.01 0.00 0.00 4.70
989 1277 1.097547 GGATTCCATGACAGGCCACG 61.098 60.000 5.01 0.00 0.00 4.94
990 1278 0.257039 AGGATTCCATGACAGGCCAC 59.743 55.000 5.01 0.00 0.00 5.01
992 1280 0.179006 GGAGGATTCCATGACAGGCC 60.179 60.000 5.29 0.00 43.45 5.19
1056 1344 2.313317 GTCAGGTATATCGTCCACCCA 58.687 52.381 0.00 0.00 32.43 4.51
1155 1443 1.437149 TCCTTCCCTTTCCTCCTCTCA 59.563 52.381 0.00 0.00 0.00 3.27
1173 1461 0.721718 CATCCGCGTTGTTCTCTTCC 59.278 55.000 4.92 0.00 0.00 3.46
1326 1614 0.037232 ACTTGGTAAGCGTCTCAGCC 60.037 55.000 0.00 0.00 38.01 4.85
1335 1623 1.347320 CGGTCGAGAACTTGGTAAGC 58.653 55.000 0.00 0.00 0.00 3.09
1353 1641 2.302230 CGCCTTTTTGTTGCTGCCG 61.302 57.895 0.00 0.00 0.00 5.69
1395 1683 1.202557 TGGCCTCTTTTGCTGCTTTTG 60.203 47.619 3.32 0.00 0.00 2.44
1459 1747 3.751518 ACGAGCAAGGTTTTTACATCCT 58.248 40.909 0.00 0.00 0.00 3.24
1460 1748 3.751698 AGACGAGCAAGGTTTTTACATCC 59.248 43.478 0.00 0.00 0.00 3.51
1508 1799 2.996249 TTCCTCATGCCTCTGACATC 57.004 50.000 0.00 0.00 0.00 3.06
1674 1965 7.507277 TGTCTATAGAAACATAGGAGAGCATGT 59.493 37.037 3.40 0.00 36.96 3.21
1742 2033 0.325671 TTTGGGTTGGTGGCCTCAAA 60.326 50.000 3.32 0.00 0.00 2.69
1872 2164 7.173218 ACGTGAAAAGATTATTGACAGACACAT 59.827 33.333 0.00 0.00 0.00 3.21
1918 2210 2.730934 TATGCGACAGAGGGAGTACT 57.269 50.000 0.00 0.00 0.00 2.73
1919 2211 5.646577 ATATTATGCGACAGAGGGAGTAC 57.353 43.478 0.00 0.00 0.00 2.73
1920 2212 7.173032 TCTTATATTATGCGACAGAGGGAGTA 58.827 38.462 0.00 0.00 0.00 2.59
1921 2213 6.010850 TCTTATATTATGCGACAGAGGGAGT 58.989 40.000 0.00 0.00 0.00 3.85
1922 2214 6.151985 ACTCTTATATTATGCGACAGAGGGAG 59.848 42.308 0.00 0.00 32.21 4.30
1923 2215 6.010850 ACTCTTATATTATGCGACAGAGGGA 58.989 40.000 0.00 0.00 32.21 4.20
1924 2216 6.096036 CACTCTTATATTATGCGACAGAGGG 58.904 44.000 0.00 0.00 32.21 4.30
1925 2217 6.682746 ACACTCTTATATTATGCGACAGAGG 58.317 40.000 0.00 0.00 32.21 3.69
1926 2218 8.581057 AAACACTCTTATATTATGCGACAGAG 57.419 34.615 0.00 0.00 33.83 3.35
1927 2219 8.942338 AAAACACTCTTATATTATGCGACAGA 57.058 30.769 0.00 0.00 0.00 3.41
1928 2220 9.425893 CAAAAACACTCTTATATTATGCGACAG 57.574 33.333 0.00 0.00 0.00 3.51
1929 2221 9.157104 TCAAAAACACTCTTATATTATGCGACA 57.843 29.630 0.00 0.00 0.00 4.35
1930 2222 9.422196 GTCAAAAACACTCTTATATTATGCGAC 57.578 33.333 0.00 0.00 0.00 5.19
1931 2223 9.157104 TGTCAAAAACACTCTTATATTATGCGA 57.843 29.630 0.00 0.00 31.20 5.10
1957 2249 6.525629 AGAGCAATTTTGACACTACACTAGT 58.474 36.000 0.00 0.00 40.28 2.57
1958 2250 7.426929 AAGAGCAATTTTGACACTACACTAG 57.573 36.000 0.00 0.00 0.00 2.57
1960 2252 7.986085 ATAAGAGCAATTTTGACACTACACT 57.014 32.000 0.00 0.00 0.00 3.55
1966 2258 9.683069 CCCATAATATAAGAGCAATTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
1967 2259 9.639563 TCCCATAATATAAGAGCAATTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
1968 2260 9.899226 GTCCCATAATATAAGAGCAATTTTGAC 57.101 33.333 0.00 0.00 0.00 3.18
1969 2261 8.783093 CGTCCCATAATATAAGAGCAATTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
1970 2262 8.023128 CCGTCCCATAATATAAGAGCAATTTTG 58.977 37.037 0.00 0.00 0.00 2.44
1971 2263 7.942341 TCCGTCCCATAATATAAGAGCAATTTT 59.058 33.333 0.00 0.00 0.00 1.82
1972 2264 7.458397 TCCGTCCCATAATATAAGAGCAATTT 58.542 34.615 0.00 0.00 0.00 1.82
1973 2265 7.016153 TCCGTCCCATAATATAAGAGCAATT 57.984 36.000 0.00 0.00 0.00 2.32
1974 2266 6.352222 CCTCCGTCCCATAATATAAGAGCAAT 60.352 42.308 0.00 0.00 0.00 3.56
1975 2267 5.046591 CCTCCGTCCCATAATATAAGAGCAA 60.047 44.000 0.00 0.00 0.00 3.91
1976 2268 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
1977 2269 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1978 2270 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1979 2271 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1980 2272 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1981 2273 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1982 2274 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1983 2275 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1984 2276 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
1985 2277 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
1986 2278 2.969950 CAATACTCCCTCCGTCCCATAA 59.030 50.000 0.00 0.00 0.00 1.90
1987 2279 2.090943 ACAATACTCCCTCCGTCCCATA 60.091 50.000 0.00 0.00 0.00 2.74
1988 2280 1.344087 ACAATACTCCCTCCGTCCCAT 60.344 52.381 0.00 0.00 0.00 4.00
1989 2281 0.042131 ACAATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
1990 2282 0.751452 GACAATACTCCCTCCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
1991 2283 1.777941 AGACAATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
1992 2284 4.142790 TGATAGACAATACTCCCTCCGTC 58.857 47.826 0.00 0.00 0.00 4.79
1993 2285 4.145807 CTGATAGACAATACTCCCTCCGT 58.854 47.826 0.00 0.00 0.00 4.69
1994 2286 4.145807 ACTGATAGACAATACTCCCTCCG 58.854 47.826 0.00 0.00 0.00 4.63
1995 2287 7.288158 ACTTAACTGATAGACAATACTCCCTCC 59.712 40.741 0.00 0.00 0.00 4.30
1996 2288 8.240267 ACTTAACTGATAGACAATACTCCCTC 57.760 38.462 0.00 0.00 0.00 4.30
1997 2289 8.611051 AACTTAACTGATAGACAATACTCCCT 57.389 34.615 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.