>input_sequence_79655
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-------ATGGAATCCTCCCAGATCACCGGGGATGGCGGCGAAGAGTGCAACAGCAATGAATCTGGGTGGACGATATACC
TGACCTCCCCCACGAGCAGCTATGAAGCAAAAGAGAATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATC
ACTGAGAGGAGGAAAGGGAAGGAAGAGAACAACGCGGATGATGATGGAGATTATGATTCCCTGGCGTCTGATGCTTCCAC
AGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAAGATCGTCAGACAAATGACGGTTGCAGCAATGAACATG
GCAAGGATGAACAGGCTGAGACGCTTACCAAGTTCTCGACCGGCAGCAACAAAAAGGCGGGCAAGGTGAAGAAAGGGGAC
GACAAAAGCAGCAAAAGAGGCCACAATAGAAGACGTAGCTCATCAAGAACAAGCTTCTTTTGGTAA--------------
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>chr5A_1_TraesCS5A01G250900
TATCATGTTCCAATCAACCGCATCTCACCATATCCACCACAGATCGATGCTCTTACCTGCAACGGCAGAGTTCTGGCTTA
CCAAGAAGGCAACGACGAGAGTGGCAGCACATGAGAAGTCCAGTGGCTCTGGGCCTGGTTGCTCGTCCACCGTCTACATG
TAGCACGTAC---GTACCAATACCAAAGCAAACAAAAGACATGTTCTCCTGGTCCTGCAGACTGTTGTTGAAGTGGAGAT
ACGCCGTGAGCAAGCTAGGCATTTGGCAGGCATGGATGACAGGCAGACACAGCGGCGACAGGA-GCCTTTTGAGCTATGC
CAGCCTCATGCTTAACCTTCTAATCTAATGCTAATAAATCATGGGCTAGCT-AACCCAGGCAGGCAGGCAGGTGCATCTA
ATCTCCCC--AGGCCGGCCTCTCTGCCAGGCCCCCACCATGAGGGCGAGGCGCTACGGCCACATGGACTACAGATGGAAA
TACCTGTAACACTGCGTTGCAAGCAAAATGCCTCCTCCTCCTGCTCCTCCTCCTCCCTTGGCTTTGGCTTTGGTGACAAG
AGAGGAGAGGGTACGCAAATGGTTGGGGAAAGTTATGGGTGACAGTTGGAGCTCGCGAGGATAGGCCACCCTTTCCCATT
TAAACACACTGCCATCCTCTCTGCGGTTCCTTCACACACCTCCACCCCCAGACACACCATAGCCATACACATGGTCCGGC
CCTGAAGAATTCTTGCCCCCCTCTCATGCAATCCAGCCC-----------------------------------------
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---------------------------------------------------------------------------CTCCC
TCTGAATTCTCTGTCCTCTGAAGAAGGCTGAGTGCAGGAGGATCCGGTGCTCTTCTCGGGTTATGGGTGCTCAAGAAGCA
TAGACAAGAACAACTCCATCTTCAGTGCTGCATTGTTGAGGAGATTCAGATTTCGGAAGAAGCATAAGAGTTGGTGTTCG
CAGAATTCTCCATCGACCTCGTTCTGCCTCTCTTCT----TTGGCCTTTCTTTTCTCTCTTTTGGTCTCCCGCTCCCGTG
GCCTGTCATGGAATCCTCCCAGATCACCGGGGATGGCGGCGAAGAGTGCAACAGCAATGAATCTGGGTGGACGATATACC
TGACCTCCCCCACGAGCAGCTATGAAGCAAAAGAGAATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATC
ACTGAGAGGAGGAAAGGGAAGGAAGAGAACAACGCGGATGATGATGGAGATTATGATTCCCTGGCGTCTGATGCTTCCAC
AGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAAGATCGTCAGACAAATGACGGTTGCAGCAATGAACATG
GCAAGGATGAACAGGCTGAGACGCTTACCAAGTTCTCGACCGGCAGCAACAAAAAGGCGGGCAAGGTGAAGAAAGGGGAC
GACAAAAGCAGCAAAAGAGGCCACAATAGAAGACGTAGCTCATCAAGAACAAGCTTCTTTTGGTAAAGGATGTAAAAACC
TTGCTCGTCTATTTCTTTCTTAT---CAAGCTAGAATCGATGTCAGAGGCATGAGGAATTGAAGGCCTTGTCATGGTCCC
TGCTATTGCCTTCTATTGTTTTGTCCATTTGTTAGCCACCTCATAGGTTAGTTCTTCCTATGCAAATCTGTCACCCTTGA
ATTATTATTCATTGCCCTATTCTTAATATTGACATTCAAGCACTACATGCTCTCCTATGTTTCTATAGACATTAATGATC
ACTTTGTCCAGATACACCTCCCCAATGAGGTGTTTGAGGCCACCAACCCAAAAAGATAATTCGGTTCAATGGCCTTCTGC
TTTCCCAATATTTTTATAGGTCAGAATATCTGCATGTGTTAAAATTTAC-TCAGAAAAAGCGTATATAGAAATCTGCTTT
ATCATGTGTCTGTCAATAATCTTTTCACGTTTGGTGAGCAATCTAATATAGTACTCCCTCTGTCGCATAATATAAGAGTG
TTTTTGACACTAGTGTAGTGTCAAAATTGCTCTTATATTATGGGACGGAGGGA---------------------------
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------------------GTATTGTCTATCAGTTAAGTTATATGAACTGCTACAGAGCAAAAATTAATAGGATTTACACA
AATCTCCTTAACACATCTTTCTTACCCTTGAGTAAAGCAAATCCTATGATATATAGTAGATCAATCTTACTACAACTGAT
GCGGCATTTGCACATGAAACCTAGGAATATCCGGCCCTTCCATATAAGAAGCATTAGACAATGTACAGTACATTTATAAA
CAATAAGATGTAGAAGATTTCAACAAGACGAACCAACAATGTACTGTACAAACAAGTGTAGTTTACAGAACAGCTTAAGT
AGACATGACAAGTAATACAAGGTACAAGAGCCTCCAGCTATCACCTGATATGTGCAATTCCTACTCTTTGCGTCTACAGT
AGTTCCCTCCCAACAGTACTAGCAGCAGTAGCAT---ATGGAGCACCTTCTGCTGGGCAAATGATGCAAAAGAAGGTA
>chr5D_56
-------------------------------------------------------CCTGCAACAGCAGAGTTCTTGCTTG
CCCAGATGGCAACGATGACAGTATCAGCACATGAGAAATCCAGTGGCTCTGGGCCTAATTGCTCATCCACCGTCTACATG
TAGCACGTAC---GTACTAATACCAAAGCAAACAAAAGACATGTTCTCCTGGTCCTGCAGACTGTTGTTGAAGTGGAGAT
ACGCCGTGAGCAAGCTAGGCATTTGGCATGCATGGATGACAGGCAGACACAGCAGCGACAGGGGGCCTTTTGAGCTATGC
CAGCCTCATGCTTAACCTTCTAATCTAATGCTAATAAATCATGGGCTAACCAAACCCAGGCAGCCAGGCAGGTGCATCTA
ATCTCCCC--AGGC----CTATCTGCCAGGCCCCCACCATGAGGGCGAGGCGCTACGGCCACATGGACTACAGATGGAAA
TACCTGTAACACTGCGTTGCAAGCGAAATGGTTTGCTCCTCCCTCC-----------------TTGGCTTTGGTGACAAG
AGAAGAGAGGGTACGCAAATGGTTGGGGAAAGTTATGGGTGACAGTTGGAGCTTGCGAGGATAGGCCACCCTTTCCCATT
TAAACACACTGCCATCCTTTCTGCGGTTCCTTCACACACCTCCACCCCCAAACACACCATAGCCATACACACGGCCCAGC
CCTGAAGAATTCTTGCCCCCCCTCAA------------------------------------------------------
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---------------------------------------------------------------------------CTCCT
TCTGAATTCTTGATCCTTTGAAGAGGGCTGATTGCTGGAGGATCTGGTGCTCTTCTCGGGTTATGGGTGCTCAAGAGGCA
TAGGCAAGAACAGTGCCATCTTCAGTGCTGCATTGTTGAGGATATTCAGATTTCGGGAGAAGCATAAGAGTAGGTGCTCG
CAGAATTCTCCCTCGACCTTGTTCTGCCTTGTTTCCATTCTTGGCCATTCTTGTCTCTCTTTTGGTCTTCCACTCCGATC
GCCTGTCATGGAATCCTCCCAAATCACCGGGGATGGCGGCGAAGAGTGCAACAGCAATGAATCCGGGTGGACAATATACC
TGACCTCCCCCACAAGCAGCTATGAAGCAAAAGAGAATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATC
ACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCGGATGATGATGGAGATTATGATTCCCTGGCGTCTGATGCTTCCAC
AGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAGGATCGTCAGACAAATCATGGTTCCAGCAATGAACATG
TCAAGGATGAACAAGCTGAGACACTTACCAAGTTCTCGACAGGCAGCAACAAAAAGGCGGGCAAGGTGAAGAAAGGGGAC
GAGAAAAGCAGCAAAAGAGGCCACAGTAGAAGACGTAGCTCATCAAGAACAAGCTTCTTTTGGTAACTGATGTAAAAACC
TTGCTCATCTATTTCTTTCTTATTATCAAGCTAGAATCAATGTCAGAGGCATGAGGAATTGAAGGCCTTGTGATGGTCCC
TGCTATTGCCTTCTGCTGTTTTGTCCATTTGTTAGCCACCTCATAGGTTAGTTCTTCCTGTGCAAATCTGTCACCCTTTC
ATTATTATTCATTACCCTATTCGTAATATCGACATTCAAGCACTGCATGCTCTCCTATGTTTCTATAGACATTAATGATC
ACTTTGTCCAGATACACCTCCCCAATGAGGTG-TTGAGGCCACCAACCCAAAAAGATAATTCGGTTCAATGGCCTTCTGC
TTTCCCAAAAAAATTATAGGTCAGAATATCTGCATGTGTTAAAATTTAC-TCAGAAAAGGCGTATATAGAAATCTGCTTT
ATCGTGTGTCTGTCAATAATCTTTTCACGTTTGGTGAGCAATCTAATAT-------------------------------
----------------------------------------------------A---------------------------
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------------------GTATTGTCTATCAGTTAAGTTATATGAACAGCCGTAGAGCAAAAATTAATAGGATTTACACA
AATCTCCTTAACACATCTTTCTTACCCTTGAGTAAAGCAAATCCTATCATATATAGTAGATCAATCTTACTACAACTGAT
GCAGCATTTGCACATGAAACCTAGGAATATCCGGCCCTTCCAT--AAGAAGCATTAGACAATGTACAGTACATTTATAAA
CAATAAGATGTAGAAGATTTAAACAAGACGAACCAACAATGTACTGTACAAGCAAGTGTAGTTTACAGAACAGCTTAAGT
AGACATGACAAGTAATACAAGGTACAAGAGCCTCCAGCTATCACCTGATATGTGCAGTTCCTACTCTTTGCGTCTACAGT
AGTTCCCTCCCAACAGTACTAGCAGCAGTAGCAT---ATGGAGCACCTGCTGCTGGGCAAATGATGCGAAAGAAGGTA
>chr5B_77
----------------------------------------------------------------------------CTTA
CCAAGATGGCAACGATGAGAGTGGCAGCACATGACAAATCCAGTGGCTCTGGGCCTAATTGCTCGTCCACCGTCTACATG
TAGCACGTACTACGTACTAATACCAAAGCAAACAAAAGACATGTTCTCCTGGTCCTGCAGACTGTTGTTGAAGTGGAGAT
ACGCCGTGAGCAAGCTAGGCATTTGGCAGGCATGGATGACAGGCAGACACAGCGGCGACAGGAGGCCTTTTGAGCTATGC
CAGCCTCACGCTTAACCTTGTAATCTAATGCTAATAAATCATGGGCTAACCAAACCCAGG----CAGGCAGGTGCATCTA
ATCTCCCCCCAGGC----CTCCCTGCCAGGCCCCCACCATGAGGGCGAGGCGCTACGGCCACATGGACTACAGATGGAAA
TACCTGTAACACTGCGTTGCAAGCAAAATGGTTTGCTCCTCCCTCC-----------------TTGGCTTTGGTGACAAG
AGAAGAGAGGGTACGCAAATGGTTGGGGAAAGTTATGGGTGACAGTTGGAGCTTGCGAGGATAGGCCACCCTTTCCCATT
TAAACACACTGTCATCCTTT----------------------CACCCCCAAACACACCATAGCCANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCC
TCTGAATTCTTG--------------------------------------------CGGGTTATGGGTGCTCAATAGGCG
TAGGCAAGAACAGTGCCATCTTCAGTGCTGCATTGTTGAGGATATTCAGATTTCGGGAGAAGCATAAGAGTAGGTGCTCG
CAGAATTCTCCCTCGACCTTGTTCTGCCTTGTTTCCGTTCTTGGCCATTCTTGTCTCTCTTTTGGTCTTCCACTCCGAAC
GCCTGTCATGGAATCCTCCATGATCACCGGGGATGGCGGCGAAGAGTGCAACAGTAATGAATCCGGGTGGACGATATACC
TGACCTCCCCCACGAGCAGCTATGAAGCAAAAGACAATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATC
ACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCGGATGACGATGGAGATTACGATTCCCTGGCGTCTGATGCTTCCAC
AGGGCCATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAAGATCGTCAGACAAATGACGGTTGCAGCAATGAACATG
GCAAGGATGAAGAAGCTGAGACACTTACCAAGTTCCCGACAGGCAGCAACAAAAAGGCAGGCAAGGTGAAGAAAGGGGAC
GAAAAAAGCAGCAAAAGAGGCCACAATAGAAGACGTAGCTCATCAAGAACAAGCTTCTTTTGGTAACTGATGTAAAAACC
TTGCTCATCTATTCCTTTC---TTATCAAGCTAGAATCCATGTCAGAGGCACGAGGAATTGAAGGCCTTGTCATGGTCCC
TGCTATTGCCTTCTATTGTTTTGTCCATTTGTTAGCCACCCCATAGGTTAGTTCTTCCTATGCAAATCTGTCACCATTTC
ATTATTATTCATTGCCCTATTCTTAATATCGACATTCAAGCACTGCATGCCCTCCTATGTTTCTATAGACATTAATGATC
ACTTTGTCCAGATACACCTCCCCAATGAGGTG-TTGAGGCCACCAACCCAAAAAGATAATTCGGTTAAATGGCCTTCTGC
TTTCCCCGAAAATTTATAGGTCAGAATATCTGCATGTGTTAAAAATTTATTCAGAAAAGGCGTATATAGAAATCTGCTTT
ATCGTGTGTCTGTCAATAAGCTTTTCACGTTTGGTGAGCAATCTAATAT-------------------------------
----------------------------------------------------ACTCCCTCCGTCCCAAAATTCTTGTCTT
AAATTTGTCTAGATACGGATGTATCTAACACTAAAACGTAACTAGATACATCCGTATTTAGACAAATCTAAGACAAGAAT
TTTGGGACGGAGGGAGTAGTATTGTCTACCAGTTCAGTTATATGAACTGCCATAGAGCAAAAAATAATAGGATTTACACA
ATTCTCCTTAACACATTTTTCTTACCCTTGAGTAAAGCAAATCCTATCATATATAGTAGATCAATCTTACTACAACTGAT
GCGGCATTTGCACATGAAACCTAGGAATATCCGGCCCTTCCATATAAGAAGCATTAGACAATGTACAGTAGATTTATAAA
CAATAAGATGCAGAATATTTCAAGAAGACGAATCAACGATTTACTGTACAAACAAGTGTTGTTTACAGGACAGCATAAGT
A-----GACAAGTAGTACAAGGTACAAGAGCCTCCA-CTATCACCTGATATGTGCAATTCCTACTCTTTGCGTCTACAGT
AGTTCCCTAAA---------AGCAGCAGTAGCATCAGATGGAGCACCTTCTGCTGGGCAAATGATGCAAAAGAAGG--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----------S-----
------S--------S---------------------S------------------SS----------------------
-----------------S--------------------------------------------------------------
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------------------------------------------------S-S------------S----------------
--------------SSSS--------------------------------------------------------------
------------------------------SS-SSSS-SS-SSSS-SSSSSSSSSSSSSSSSS-----------------
---S-------------------------------------------------S--------------------------
------------------S-------------------------------S--------------------S--S--S--
---------------------SSSS-SSSSSSSSSSSSS-----------------------------------------
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----------SSS----S------S------S---S--------S-------------------------------S---
---S--------SSS---------------------------S-------------S--------------S----S---
-----------S-------S---------SSS---S----------S-----S---------------S--S----SS-S
---------------------------------------------------------------S----------------
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--S-----------------S-----------------------------------------------------------
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-------------S--------S-----------------S---------------------------------------
--S---------------------------------------------------------------SS------------
------S-------------------------------S-----------------------------------------
------------------------------------------------------------------------------SS
-----------------------------S--------------S-----------------------------------
--------------------------------S-----------------------------------------------
--------S-SS----------------------------------------------S---------------------
---S---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
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--------------------------------------------------S-S---------------------------
-----------------------------------------------S--------------------------------
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>forward_522
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----------------------GCAAAATGCCTCCTCCTCCT--------------------------------------
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>reverse_1614
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-------------GGCTGAGACGCTTACCAAGT-----------------------------------------------
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>forward_756
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----------------CCCCCTCTCATGCAATCCAG--------------------------------------------
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>reverse_2281
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----------------------------------------TGGGACGGAGGGAGTATTGT--------------------
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