Multiple sequence alignment - TraesCS5A01G249000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G249000 chr5A 100.000 3017 0 0 1 3017 463451047 463454063 0.000000e+00 5572
1 TraesCS5A01G249000 chr5A 81.081 259 36 11 1263 1513 404178327 404178074 8.530000e-46 195
2 TraesCS5A01G249000 chr5D 92.540 2614 109 45 465 3017 362547195 362549783 0.000000e+00 3668
3 TraesCS5A01G249000 chr5D 81.538 260 33 13 1263 1513 310679089 310678836 1.830000e-47 200
4 TraesCS5A01G249000 chr5B 92.065 2596 115 39 469 3017 428461075 428463626 0.000000e+00 3568
5 TraesCS5A01G249000 chr5B 99.138 464 4 0 1 464 473811595 473811132 0.000000e+00 835
6 TraesCS5A01G249000 chr5B 98.517 472 6 1 1 472 480956929 480957399 0.000000e+00 832
7 TraesCS5A01G249000 chr5B 81.154 260 34 13 1263 1513 356598136 356597883 8.530000e-46 195
8 TraesCS5A01G249000 chr3B 98.927 466 5 0 1 466 54314835 54315300 0.000000e+00 833
9 TraesCS5A01G249000 chr3B 98.927 466 5 0 1 466 406867894 406868359 0.000000e+00 833
10 TraesCS5A01G249000 chr3B 98.305 472 6 1 1 472 769387504 769387035 0.000000e+00 826
11 TraesCS5A01G249000 chr7A 98.925 465 5 0 1 465 499574347 499573883 0.000000e+00 832
12 TraesCS5A01G249000 chr2B 98.925 465 5 0 1 465 257077843 257078307 0.000000e+00 832
13 TraesCS5A01G249000 chr2B 98.305 472 7 1 1 471 384104132 384104603 0.000000e+00 826
14 TraesCS5A01G249000 chr4A 98.101 474 7 2 1 474 454783445 454782974 0.000000e+00 824
15 TraesCS5A01G249000 chr4A 89.209 278 24 5 1266 1540 678872400 678872674 2.880000e-90 342
16 TraesCS5A01G249000 chr4D 88.849 278 25 5 1266 1540 471961656 471961930 1.340000e-88 337
17 TraesCS5A01G249000 chr4B 87.868 272 27 5 1266 1534 593422869 593423137 6.280000e-82 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G249000 chr5A 463451047 463454063 3016 False 5572 5572 100.000 1 3017 1 chr5A.!!$F1 3016
1 TraesCS5A01G249000 chr5D 362547195 362549783 2588 False 3668 3668 92.540 465 3017 1 chr5D.!!$F1 2552
2 TraesCS5A01G249000 chr5B 428461075 428463626 2551 False 3568 3568 92.065 469 3017 1 chr5B.!!$F1 2548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.036306 ACAACCCGGCGATCTTCTTT 59.964 50.0 9.3 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2341 0.105039 CTTGTCCCTATCTCGTGGGC 59.895 60.0 0.0 0.0 43.04 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.687102 CCGTGTCACGCCCAGGTA 61.687 66.667 20.01 0.00 40.91 3.08
19 20 2.431942 CGTGTCACGCCCAGGTAC 60.432 66.667 13.22 0.00 33.65 3.34
20 21 2.431942 GTGTCACGCCCAGGTACG 60.432 66.667 0.00 0.00 0.00 3.67
21 22 2.913578 TGTCACGCCCAGGTACGT 60.914 61.111 0.00 0.00 44.75 3.57
22 23 2.341176 GTCACGCCCAGGTACGTT 59.659 61.111 0.00 0.00 41.32 3.99
23 24 1.301165 GTCACGCCCAGGTACGTTT 60.301 57.895 0.00 0.00 41.32 3.60
24 25 1.301087 TCACGCCCAGGTACGTTTG 60.301 57.895 0.00 0.00 41.32 2.93
25 26 2.031465 ACGCCCAGGTACGTTTGG 59.969 61.111 0.00 0.00 40.09 3.28
26 27 3.428282 CGCCCAGGTACGTTTGGC 61.428 66.667 13.43 13.43 38.74 4.52
28 29 3.428282 CCCAGGTACGTTTGGCGC 61.428 66.667 0.00 0.00 46.11 6.53
29 30 2.666862 CCAGGTACGTTTGGCGCA 60.667 61.111 10.83 0.00 46.11 6.09
30 31 2.677003 CCAGGTACGTTTGGCGCAG 61.677 63.158 10.83 0.00 46.11 5.18
31 32 1.959226 CAGGTACGTTTGGCGCAGT 60.959 57.895 10.83 3.21 46.11 4.40
32 33 1.227734 AGGTACGTTTGGCGCAGTT 60.228 52.632 10.83 0.00 46.11 3.16
33 34 1.082366 GGTACGTTTGGCGCAGTTG 60.082 57.895 10.83 0.00 46.11 3.16
34 35 1.082366 GTACGTTTGGCGCAGTTGG 60.082 57.895 10.83 0.00 46.11 3.77
35 36 1.524165 TACGTTTGGCGCAGTTGGT 60.524 52.632 10.83 3.59 46.11 3.67
36 37 1.777030 TACGTTTGGCGCAGTTGGTG 61.777 55.000 10.83 0.00 46.11 4.17
37 38 2.804856 GTTTGGCGCAGTTGGTGT 59.195 55.556 10.83 0.00 0.00 4.16
38 39 1.588667 GTTTGGCGCAGTTGGTGTG 60.589 57.895 10.83 0.00 39.92 3.82
39 40 2.780094 TTTGGCGCAGTTGGTGTGG 61.780 57.895 10.83 0.00 37.13 4.17
40 41 4.497984 TGGCGCAGTTGGTGTGGT 62.498 61.111 10.83 0.00 37.13 4.16
41 42 3.216292 GGCGCAGTTGGTGTGGTT 61.216 61.111 10.83 0.00 37.13 3.67
42 43 2.781158 GGCGCAGTTGGTGTGGTTT 61.781 57.895 10.83 0.00 37.13 3.27
43 44 1.588667 GCGCAGTTGGTGTGGTTTG 60.589 57.895 0.30 0.00 37.13 2.93
44 45 1.588667 CGCAGTTGGTGTGGTTTGC 60.589 57.895 0.00 0.00 32.53 3.68
45 46 1.515020 GCAGTTGGTGTGGTTTGCA 59.485 52.632 0.00 0.00 0.00 4.08
46 47 0.528249 GCAGTTGGTGTGGTTTGCAG 60.528 55.000 0.00 0.00 0.00 4.41
47 48 0.102844 CAGTTGGTGTGGTTTGCAGG 59.897 55.000 0.00 0.00 0.00 4.85
48 49 1.042559 AGTTGGTGTGGTTTGCAGGG 61.043 55.000 0.00 0.00 0.00 4.45
49 50 1.040339 GTTGGTGTGGTTTGCAGGGA 61.040 55.000 0.00 0.00 0.00 4.20
50 51 0.105760 TTGGTGTGGTTTGCAGGGAT 60.106 50.000 0.00 0.00 0.00 3.85
51 52 0.827089 TGGTGTGGTTTGCAGGGATG 60.827 55.000 0.00 0.00 0.00 3.51
52 53 0.539438 GGTGTGGTTTGCAGGGATGA 60.539 55.000 0.00 0.00 0.00 2.92
53 54 0.883833 GTGTGGTTTGCAGGGATGAG 59.116 55.000 0.00 0.00 0.00 2.90
54 55 0.770499 TGTGGTTTGCAGGGATGAGA 59.230 50.000 0.00 0.00 0.00 3.27
55 56 1.271543 TGTGGTTTGCAGGGATGAGAG 60.272 52.381 0.00 0.00 0.00 3.20
56 57 1.003580 GTGGTTTGCAGGGATGAGAGA 59.996 52.381 0.00 0.00 0.00 3.10
57 58 1.918262 TGGTTTGCAGGGATGAGAGAT 59.082 47.619 0.00 0.00 0.00 2.75
58 59 2.295885 GGTTTGCAGGGATGAGAGATG 58.704 52.381 0.00 0.00 0.00 2.90
59 60 2.356535 GGTTTGCAGGGATGAGAGATGT 60.357 50.000 0.00 0.00 0.00 3.06
60 61 3.350833 GTTTGCAGGGATGAGAGATGTT 58.649 45.455 0.00 0.00 0.00 2.71
61 62 3.726557 TTGCAGGGATGAGAGATGTTT 57.273 42.857 0.00 0.00 0.00 2.83
62 63 2.995283 TGCAGGGATGAGAGATGTTTG 58.005 47.619 0.00 0.00 0.00 2.93
63 64 2.306805 TGCAGGGATGAGAGATGTTTGT 59.693 45.455 0.00 0.00 0.00 2.83
64 65 3.245016 TGCAGGGATGAGAGATGTTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
65 66 3.376546 GCAGGGATGAGAGATGTTTGTTC 59.623 47.826 0.00 0.00 0.00 3.18
66 67 4.582869 CAGGGATGAGAGATGTTTGTTCA 58.417 43.478 0.00 0.00 0.00 3.18
67 68 5.191426 CAGGGATGAGAGATGTTTGTTCAT 58.809 41.667 0.00 0.00 0.00 2.57
68 69 5.066117 CAGGGATGAGAGATGTTTGTTCATG 59.934 44.000 0.00 0.00 0.00 3.07
69 70 4.337555 GGGATGAGAGATGTTTGTTCATGG 59.662 45.833 0.00 0.00 0.00 3.66
70 71 4.337555 GGATGAGAGATGTTTGTTCATGGG 59.662 45.833 0.00 0.00 0.00 4.00
71 72 4.639078 TGAGAGATGTTTGTTCATGGGA 57.361 40.909 0.00 0.00 0.00 4.37
72 73 4.582869 TGAGAGATGTTTGTTCATGGGAG 58.417 43.478 0.00 0.00 0.00 4.30
73 74 3.350833 AGAGATGTTTGTTCATGGGAGC 58.649 45.455 0.00 0.00 0.00 4.70
74 75 2.086869 AGATGTTTGTTCATGGGAGCG 58.913 47.619 0.00 0.00 0.00 5.03
75 76 1.812571 GATGTTTGTTCATGGGAGCGT 59.187 47.619 0.00 0.00 0.00 5.07
76 77 1.234821 TGTTTGTTCATGGGAGCGTC 58.765 50.000 0.00 0.00 0.00 5.19
77 78 1.234821 GTTTGTTCATGGGAGCGTCA 58.765 50.000 0.00 0.00 0.00 4.35
78 79 1.197721 GTTTGTTCATGGGAGCGTCAG 59.802 52.381 0.00 0.00 0.00 3.51
79 80 0.955428 TTGTTCATGGGAGCGTCAGC 60.955 55.000 0.00 0.00 45.58 4.26
92 93 3.515071 GCGTCAGCTCTCGTTTTTAAA 57.485 42.857 8.50 0.00 41.01 1.52
93 94 3.470562 GCGTCAGCTCTCGTTTTTAAAG 58.529 45.455 8.50 0.00 41.01 1.85
94 95 3.664537 GCGTCAGCTCTCGTTTTTAAAGG 60.665 47.826 8.50 0.00 41.01 3.11
95 96 3.739300 CGTCAGCTCTCGTTTTTAAAGGA 59.261 43.478 0.00 0.00 0.00 3.36
96 97 4.376109 CGTCAGCTCTCGTTTTTAAAGGAC 60.376 45.833 0.00 0.00 0.00 3.85
97 98 4.750598 GTCAGCTCTCGTTTTTAAAGGACT 59.249 41.667 0.00 0.00 0.00 3.85
98 99 4.750098 TCAGCTCTCGTTTTTAAAGGACTG 59.250 41.667 0.00 7.27 31.37 3.51
99 100 3.498777 AGCTCTCGTTTTTAAAGGACTGC 59.501 43.478 0.00 8.23 0.00 4.40
100 101 3.250040 GCTCTCGTTTTTAAAGGACTGCA 59.750 43.478 0.00 0.00 31.86 4.41
101 102 4.773510 CTCTCGTTTTTAAAGGACTGCAC 58.226 43.478 0.00 0.00 0.00 4.57
102 103 4.193090 TCTCGTTTTTAAAGGACTGCACA 58.807 39.130 0.00 0.00 0.00 4.57
103 104 4.636648 TCTCGTTTTTAAAGGACTGCACAA 59.363 37.500 0.00 0.00 0.00 3.33
104 105 4.664188 TCGTTTTTAAAGGACTGCACAAC 58.336 39.130 0.00 0.00 0.00 3.32
105 106 3.794564 CGTTTTTAAAGGACTGCACAACC 59.205 43.478 0.00 0.00 0.00 3.77
106 107 4.116961 GTTTTTAAAGGACTGCACAACCC 58.883 43.478 0.00 0.00 0.00 4.11
107 108 1.989706 TTAAAGGACTGCACAACCCC 58.010 50.000 0.00 0.00 0.00 4.95
108 109 0.111639 TAAAGGACTGCACAACCCCC 59.888 55.000 0.00 0.00 0.00 5.40
109 110 1.943730 AAAGGACTGCACAACCCCCA 61.944 55.000 0.00 0.00 0.00 4.96
110 111 1.943730 AAGGACTGCACAACCCCCAA 61.944 55.000 0.00 0.00 0.00 4.12
111 112 1.903404 GGACTGCACAACCCCCAAG 60.903 63.158 0.00 0.00 0.00 3.61
112 113 1.152756 GACTGCACAACCCCCAAGT 60.153 57.895 0.00 0.00 0.00 3.16
113 114 1.455383 GACTGCACAACCCCCAAGTG 61.455 60.000 0.00 0.00 36.39 3.16
117 118 2.946947 CACAACCCCCAAGTGCTAG 58.053 57.895 0.00 0.00 0.00 3.42
118 119 0.400213 CACAACCCCCAAGTGCTAGA 59.600 55.000 0.00 0.00 0.00 2.43
119 120 1.145571 ACAACCCCCAAGTGCTAGAA 58.854 50.000 0.00 0.00 0.00 2.10
120 121 1.073923 ACAACCCCCAAGTGCTAGAAG 59.926 52.381 0.00 0.00 0.00 2.85
121 122 0.038310 AACCCCCAAGTGCTAGAAGC 59.962 55.000 0.00 0.00 42.82 3.86
137 138 4.504132 GCACTAGCTGTTCGGGAG 57.496 61.111 0.00 0.00 37.91 4.30
138 139 1.153549 GCACTAGCTGTTCGGGAGG 60.154 63.158 0.00 0.00 37.91 4.30
139 140 1.153549 CACTAGCTGTTCGGGAGGC 60.154 63.158 0.00 0.00 0.00 4.70
140 141 1.609501 ACTAGCTGTTCGGGAGGCA 60.610 57.895 0.00 0.00 0.00 4.75
141 142 0.978146 ACTAGCTGTTCGGGAGGCAT 60.978 55.000 0.00 0.00 0.00 4.40
142 143 0.179000 CTAGCTGTTCGGGAGGCATT 59.821 55.000 0.00 0.00 0.00 3.56
143 144 1.412710 CTAGCTGTTCGGGAGGCATTA 59.587 52.381 0.00 0.00 0.00 1.90
144 145 0.179000 AGCTGTTCGGGAGGCATTAG 59.821 55.000 0.00 0.00 0.00 1.73
145 146 1.440145 GCTGTTCGGGAGGCATTAGC 61.440 60.000 0.00 0.00 41.10 3.09
146 147 0.107703 CTGTTCGGGAGGCATTAGCA 60.108 55.000 0.00 0.00 44.61 3.49
147 148 0.392461 TGTTCGGGAGGCATTAGCAC 60.392 55.000 0.00 0.00 44.61 4.40
148 149 0.107654 GTTCGGGAGGCATTAGCACT 60.108 55.000 0.00 0.00 44.61 4.40
149 150 0.618458 TTCGGGAGGCATTAGCACTT 59.382 50.000 0.00 0.00 44.61 3.16
150 151 0.618458 TCGGGAGGCATTAGCACTTT 59.382 50.000 0.00 0.00 44.61 2.66
151 152 1.017387 CGGGAGGCATTAGCACTTTC 58.983 55.000 0.00 0.00 44.61 2.62
152 153 1.678728 CGGGAGGCATTAGCACTTTCA 60.679 52.381 0.00 0.00 44.61 2.69
153 154 2.019984 GGGAGGCATTAGCACTTTCAG 58.980 52.381 0.00 0.00 44.61 3.02
154 155 2.356125 GGGAGGCATTAGCACTTTCAGA 60.356 50.000 0.00 0.00 44.61 3.27
155 156 3.347216 GGAGGCATTAGCACTTTCAGAA 58.653 45.455 0.00 0.00 44.61 3.02
156 157 3.376546 GGAGGCATTAGCACTTTCAGAAG 59.623 47.826 0.00 0.00 44.61 2.85
157 158 4.256920 GAGGCATTAGCACTTTCAGAAGA 58.743 43.478 0.00 0.00 44.61 2.87
158 159 4.853007 AGGCATTAGCACTTTCAGAAGAT 58.147 39.130 0.00 0.00 44.61 2.40
159 160 4.880696 AGGCATTAGCACTTTCAGAAGATC 59.119 41.667 0.00 0.00 44.61 2.75
160 161 4.880696 GGCATTAGCACTTTCAGAAGATCT 59.119 41.667 0.00 0.00 44.61 2.75
161 162 5.007528 GGCATTAGCACTTTCAGAAGATCTC 59.992 44.000 0.00 0.00 44.61 2.75
162 163 5.816777 GCATTAGCACTTTCAGAAGATCTCT 59.183 40.000 0.00 0.00 41.58 3.10
163 164 6.983307 GCATTAGCACTTTCAGAAGATCTCTA 59.017 38.462 0.00 0.00 41.58 2.43
164 165 7.656948 GCATTAGCACTTTCAGAAGATCTCTAT 59.343 37.037 0.00 0.00 41.58 1.98
168 169 8.476064 AGCACTTTCAGAAGATCTCTATATCA 57.524 34.615 0.00 0.00 36.69 2.15
169 170 8.922237 AGCACTTTCAGAAGATCTCTATATCAA 58.078 33.333 0.00 0.00 36.69 2.57
170 171 8.977505 GCACTTTCAGAAGATCTCTATATCAAC 58.022 37.037 0.00 0.00 36.69 3.18
171 172 9.474920 CACTTTCAGAAGATCTCTATATCAACC 57.525 37.037 0.00 0.00 36.69 3.77
172 173 8.356657 ACTTTCAGAAGATCTCTATATCAACCG 58.643 37.037 0.00 0.00 36.69 4.44
173 174 7.825331 TTCAGAAGATCTCTATATCAACCGT 57.175 36.000 0.00 0.00 31.12 4.83
174 175 7.825331 TCAGAAGATCTCTATATCAACCGTT 57.175 36.000 0.00 0.00 31.12 4.44
175 176 8.239038 TCAGAAGATCTCTATATCAACCGTTT 57.761 34.615 0.00 0.00 31.12 3.60
176 177 9.350951 TCAGAAGATCTCTATATCAACCGTTTA 57.649 33.333 0.00 0.00 31.12 2.01
177 178 9.400638 CAGAAGATCTCTATATCAACCGTTTAC 57.599 37.037 0.00 0.00 31.12 2.01
178 179 9.357161 AGAAGATCTCTATATCAACCGTTTACT 57.643 33.333 0.00 0.00 30.22 2.24
179 180 9.968870 GAAGATCTCTATATCAACCGTTTACTT 57.031 33.333 0.00 0.00 0.00 2.24
180 181 9.751542 AAGATCTCTATATCAACCGTTTACTTG 57.248 33.333 0.00 0.00 0.00 3.16
181 182 8.915036 AGATCTCTATATCAACCGTTTACTTGT 58.085 33.333 0.00 0.00 0.00 3.16
182 183 9.530633 GATCTCTATATCAACCGTTTACTTGTT 57.469 33.333 0.00 0.00 0.00 2.83
183 184 8.697846 TCTCTATATCAACCGTTTACTTGTTG 57.302 34.615 0.00 0.00 40.48 3.33
184 185 7.277098 TCTCTATATCAACCGTTTACTTGTTGC 59.723 37.037 0.00 0.00 39.30 4.17
185 186 3.636282 ATCAACCGTTTACTTGTTGCC 57.364 42.857 0.00 0.00 39.30 4.52
186 187 2.645802 TCAACCGTTTACTTGTTGCCT 58.354 42.857 0.00 0.00 39.30 4.75
187 188 2.614983 TCAACCGTTTACTTGTTGCCTC 59.385 45.455 0.00 0.00 39.30 4.70
188 189 1.601166 ACCGTTTACTTGTTGCCTCC 58.399 50.000 0.00 0.00 0.00 4.30
189 190 0.515564 CCGTTTACTTGTTGCCTCCG 59.484 55.000 0.00 0.00 0.00 4.63
190 191 1.504359 CGTTTACTTGTTGCCTCCGA 58.496 50.000 0.00 0.00 0.00 4.55
191 192 2.073816 CGTTTACTTGTTGCCTCCGAT 58.926 47.619 0.00 0.00 0.00 4.18
192 193 2.482721 CGTTTACTTGTTGCCTCCGATT 59.517 45.455 0.00 0.00 0.00 3.34
193 194 3.666902 CGTTTACTTGTTGCCTCCGATTG 60.667 47.826 0.00 0.00 0.00 2.67
194 195 1.448985 TACTTGTTGCCTCCGATTGC 58.551 50.000 0.00 0.00 0.00 3.56
195 196 1.135315 CTTGTTGCCTCCGATTGCG 59.865 57.895 0.00 0.00 37.24 4.85
196 197 1.298157 CTTGTTGCCTCCGATTGCGA 61.298 55.000 0.00 0.00 40.82 5.10
197 198 1.298157 TTGTTGCCTCCGATTGCGAG 61.298 55.000 0.00 0.00 40.82 5.03
198 199 2.125147 TTGCCTCCGATTGCGAGG 60.125 61.111 11.36 11.36 40.82 4.63
199 200 2.954684 TTGCCTCCGATTGCGAGGT 61.955 57.895 15.21 0.00 40.82 3.85
200 201 2.892425 GCCTCCGATTGCGAGGTG 60.892 66.667 15.21 0.00 40.82 4.00
201 202 2.202932 CCTCCGATTGCGAGGTGG 60.203 66.667 8.60 0.00 40.82 4.61
202 203 2.579201 CTCCGATTGCGAGGTGGT 59.421 61.111 0.00 0.00 40.82 4.16
203 204 1.811266 CTCCGATTGCGAGGTGGTG 60.811 63.158 0.00 0.00 40.82 4.17
204 205 2.819595 CCGATTGCGAGGTGGTGG 60.820 66.667 0.00 0.00 40.82 4.61
205 206 2.047274 CGATTGCGAGGTGGTGGT 60.047 61.111 0.00 0.00 40.82 4.16
206 207 1.216977 CGATTGCGAGGTGGTGGTA 59.783 57.895 0.00 0.00 40.82 3.25
207 208 0.806102 CGATTGCGAGGTGGTGGTAG 60.806 60.000 0.00 0.00 40.82 3.18
208 209 0.535335 GATTGCGAGGTGGTGGTAGA 59.465 55.000 0.00 0.00 0.00 2.59
209 210 1.139058 GATTGCGAGGTGGTGGTAGAT 59.861 52.381 0.00 0.00 0.00 1.98
210 211 0.249120 TTGCGAGGTGGTGGTAGATG 59.751 55.000 0.00 0.00 0.00 2.90
211 212 1.521681 GCGAGGTGGTGGTAGATGC 60.522 63.158 0.00 0.00 0.00 3.91
212 213 1.897423 CGAGGTGGTGGTAGATGCA 59.103 57.895 0.00 0.00 0.00 3.96
213 214 0.249120 CGAGGTGGTGGTAGATGCAA 59.751 55.000 0.00 0.00 0.00 4.08
214 215 1.134401 CGAGGTGGTGGTAGATGCAAT 60.134 52.381 0.00 0.00 0.00 3.56
215 216 2.565841 GAGGTGGTGGTAGATGCAATC 58.434 52.381 0.00 0.00 46.04 2.67
227 228 1.674962 GATGCAATCAGACAGGGAAGC 59.325 52.381 0.00 0.00 44.70 3.86
228 229 0.694771 TGCAATCAGACAGGGAAGCT 59.305 50.000 0.00 0.00 0.00 3.74
229 230 1.339438 TGCAATCAGACAGGGAAGCTC 60.339 52.381 0.00 0.00 0.00 4.09
230 231 1.339438 GCAATCAGACAGGGAAGCTCA 60.339 52.381 0.00 0.00 0.00 4.26
231 232 2.630158 CAATCAGACAGGGAAGCTCAG 58.370 52.381 0.00 0.00 0.00 3.35
232 233 0.540923 ATCAGACAGGGAAGCTCAGC 59.459 55.000 0.00 0.00 0.00 4.26
233 234 0.833409 TCAGACAGGGAAGCTCAGCA 60.833 55.000 0.00 0.00 0.00 4.41
234 235 0.391395 CAGACAGGGAAGCTCAGCAG 60.391 60.000 0.00 0.00 0.00 4.24
235 236 0.543883 AGACAGGGAAGCTCAGCAGA 60.544 55.000 0.00 0.00 0.00 4.26
236 237 0.322975 GACAGGGAAGCTCAGCAGAA 59.677 55.000 0.00 0.00 0.00 3.02
237 238 0.990374 ACAGGGAAGCTCAGCAGAAT 59.010 50.000 0.00 0.00 0.00 2.40
238 239 1.353694 ACAGGGAAGCTCAGCAGAATT 59.646 47.619 0.00 0.00 0.00 2.17
239 240 2.224967 ACAGGGAAGCTCAGCAGAATTT 60.225 45.455 0.00 0.00 0.00 1.82
240 241 2.163815 CAGGGAAGCTCAGCAGAATTTG 59.836 50.000 0.00 0.00 0.00 2.32
241 242 1.475682 GGGAAGCTCAGCAGAATTTGG 59.524 52.381 0.00 0.00 0.00 3.28
242 243 2.440409 GGAAGCTCAGCAGAATTTGGA 58.560 47.619 0.00 0.00 0.00 3.53
243 244 2.422832 GGAAGCTCAGCAGAATTTGGAG 59.577 50.000 0.00 0.00 0.00 3.86
245 246 0.455005 GCTCAGCAGAATTTGGAGCC 59.545 55.000 0.00 0.00 43.87 4.70
246 247 1.830279 CTCAGCAGAATTTGGAGCCA 58.170 50.000 0.00 0.00 0.00 4.75
247 248 2.376109 CTCAGCAGAATTTGGAGCCAT 58.624 47.619 0.00 0.00 0.00 4.40
248 249 2.758979 CTCAGCAGAATTTGGAGCCATT 59.241 45.455 0.00 0.00 0.00 3.16
249 250 2.494471 TCAGCAGAATTTGGAGCCATTG 59.506 45.455 0.00 0.00 0.00 2.82
250 251 2.232941 CAGCAGAATTTGGAGCCATTGT 59.767 45.455 0.00 0.00 0.00 2.71
251 252 2.494870 AGCAGAATTTGGAGCCATTGTC 59.505 45.455 0.00 0.00 0.00 3.18
252 253 2.733227 GCAGAATTTGGAGCCATTGTCG 60.733 50.000 0.00 0.00 0.00 4.35
253 254 2.749076 CAGAATTTGGAGCCATTGTCGA 59.251 45.455 0.00 0.00 0.00 4.20
254 255 3.012518 AGAATTTGGAGCCATTGTCGAG 58.987 45.455 0.00 0.00 0.00 4.04
255 256 1.755179 ATTTGGAGCCATTGTCGAGG 58.245 50.000 0.00 0.00 0.00 4.63
256 257 0.690192 TTTGGAGCCATTGTCGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
257 258 0.690192 TTGGAGCCATTGTCGAGGAA 59.310 50.000 0.00 0.00 0.00 3.36
258 259 0.690192 TGGAGCCATTGTCGAGGAAA 59.310 50.000 0.00 0.00 0.00 3.13
259 260 1.281867 TGGAGCCATTGTCGAGGAAAT 59.718 47.619 0.00 0.00 0.00 2.17
260 261 1.943340 GGAGCCATTGTCGAGGAAATC 59.057 52.381 0.00 0.00 0.00 2.17
261 262 2.632377 GAGCCATTGTCGAGGAAATCA 58.368 47.619 0.00 0.00 0.00 2.57
262 263 3.009723 GAGCCATTGTCGAGGAAATCAA 58.990 45.455 0.00 0.00 0.00 2.57
263 264 3.012518 AGCCATTGTCGAGGAAATCAAG 58.987 45.455 0.00 0.00 0.00 3.02
264 265 3.009723 GCCATTGTCGAGGAAATCAAGA 58.990 45.455 0.00 0.00 0.00 3.02
265 266 3.181506 GCCATTGTCGAGGAAATCAAGAC 60.182 47.826 0.00 0.00 0.00 3.01
266 267 4.256920 CCATTGTCGAGGAAATCAAGACT 58.743 43.478 0.00 0.00 33.40 3.24
267 268 5.419542 CCATTGTCGAGGAAATCAAGACTA 58.580 41.667 0.00 0.00 33.40 2.59
268 269 5.521735 CCATTGTCGAGGAAATCAAGACTAG 59.478 44.000 0.00 0.00 33.40 2.57
269 270 5.977489 TTGTCGAGGAAATCAAGACTAGA 57.023 39.130 0.00 0.00 33.40 2.43
270 271 5.568685 TGTCGAGGAAATCAAGACTAGAG 57.431 43.478 0.00 0.00 33.40 2.43
271 272 4.142359 TGTCGAGGAAATCAAGACTAGAGC 60.142 45.833 0.00 0.00 33.40 4.09
272 273 4.017126 TCGAGGAAATCAAGACTAGAGCA 58.983 43.478 0.00 0.00 0.00 4.26
273 274 4.462834 TCGAGGAAATCAAGACTAGAGCAA 59.537 41.667 0.00 0.00 0.00 3.91
274 275 4.564769 CGAGGAAATCAAGACTAGAGCAAC 59.435 45.833 0.00 0.00 0.00 4.17
275 276 5.623368 CGAGGAAATCAAGACTAGAGCAACT 60.623 44.000 0.00 0.00 0.00 3.16
276 277 6.404844 CGAGGAAATCAAGACTAGAGCAACTA 60.405 42.308 0.00 0.00 0.00 2.24
277 278 6.635755 AGGAAATCAAGACTAGAGCAACTAC 58.364 40.000 0.00 0.00 0.00 2.73
278 279 5.813157 GGAAATCAAGACTAGAGCAACTACC 59.187 44.000 0.00 0.00 0.00 3.18
279 280 6.351456 GGAAATCAAGACTAGAGCAACTACCT 60.351 42.308 0.00 0.00 0.00 3.08
280 281 6.613153 AATCAAGACTAGAGCAACTACCTT 57.387 37.500 0.00 0.00 0.00 3.50
281 282 6.613153 ATCAAGACTAGAGCAACTACCTTT 57.387 37.500 0.00 0.00 0.00 3.11
282 283 7.719871 ATCAAGACTAGAGCAACTACCTTTA 57.280 36.000 0.00 0.00 0.00 1.85
283 284 7.719871 TCAAGACTAGAGCAACTACCTTTAT 57.280 36.000 0.00 0.00 0.00 1.40
284 285 8.135382 TCAAGACTAGAGCAACTACCTTTATT 57.865 34.615 0.00 0.00 0.00 1.40
285 286 8.594550 TCAAGACTAGAGCAACTACCTTTATTT 58.405 33.333 0.00 0.00 0.00 1.40
286 287 8.874816 CAAGACTAGAGCAACTACCTTTATTTC 58.125 37.037 0.00 0.00 0.00 2.17
287 288 8.135382 AGACTAGAGCAACTACCTTTATTTCA 57.865 34.615 0.00 0.00 0.00 2.69
288 289 8.763601 AGACTAGAGCAACTACCTTTATTTCAT 58.236 33.333 0.00 0.00 0.00 2.57
289 290 8.723942 ACTAGAGCAACTACCTTTATTTCATG 57.276 34.615 0.00 0.00 0.00 3.07
290 291 8.322091 ACTAGAGCAACTACCTTTATTTCATGT 58.678 33.333 0.00 0.00 0.00 3.21
291 292 9.167311 CTAGAGCAACTACCTTTATTTCATGTT 57.833 33.333 0.00 0.00 0.00 2.71
292 293 8.045176 AGAGCAACTACCTTTATTTCATGTTC 57.955 34.615 0.00 0.00 0.00 3.18
293 294 6.842163 AGCAACTACCTTTATTTCATGTTCG 58.158 36.000 0.00 0.00 0.00 3.95
294 295 6.430000 AGCAACTACCTTTATTTCATGTTCGT 59.570 34.615 0.00 0.00 0.00 3.85
295 296 7.040686 AGCAACTACCTTTATTTCATGTTCGTT 60.041 33.333 0.00 0.00 0.00 3.85
296 297 7.593644 GCAACTACCTTTATTTCATGTTCGTTT 59.406 33.333 0.00 0.00 0.00 3.60
299 300 9.498176 ACTACCTTTATTTCATGTTCGTTTACT 57.502 29.630 0.00 0.00 0.00 2.24
300 301 9.968743 CTACCTTTATTTCATGTTCGTTTACTC 57.031 33.333 0.00 0.00 0.00 2.59
301 302 8.385898 ACCTTTATTTCATGTTCGTTTACTCA 57.614 30.769 0.00 0.00 0.00 3.41
302 303 9.010029 ACCTTTATTTCATGTTCGTTTACTCAT 57.990 29.630 0.00 0.00 0.00 2.90
303 304 9.277565 CCTTTATTTCATGTTCGTTTACTCATG 57.722 33.333 0.00 0.00 38.96 3.07
306 307 7.672983 ATTTCATGTTCGTTTACTCATGAGT 57.327 32.000 30.11 30.11 44.38 3.41
307 308 8.771920 ATTTCATGTTCGTTTACTCATGAGTA 57.228 30.769 27.96 27.96 44.38 2.59
308 309 8.771920 TTTCATGTTCGTTTACTCATGAGTAT 57.228 30.769 31.03 15.40 44.38 2.12
309 310 9.863845 TTTCATGTTCGTTTACTCATGAGTATA 57.136 29.630 31.03 24.69 44.38 1.47
310 311 9.516314 TTCATGTTCGTTTACTCATGAGTATAG 57.484 33.333 31.03 24.04 44.38 1.31
311 312 8.135529 TCATGTTCGTTTACTCATGAGTATAGG 58.864 37.037 31.03 28.58 42.83 2.57
312 313 7.634671 TGTTCGTTTACTCATGAGTATAGGA 57.365 36.000 31.03 29.96 42.83 2.94
313 314 7.478322 TGTTCGTTTACTCATGAGTATAGGAC 58.522 38.462 31.11 27.21 42.83 3.85
314 315 6.630444 TCGTTTACTCATGAGTATAGGACC 57.370 41.667 31.03 15.83 42.83 4.46
315 316 6.363065 TCGTTTACTCATGAGTATAGGACCT 58.637 40.000 31.03 8.90 42.83 3.85
316 317 6.485984 TCGTTTACTCATGAGTATAGGACCTC 59.514 42.308 31.03 14.95 42.83 3.85
317 318 6.294065 CGTTTACTCATGAGTATAGGACCTCC 60.294 46.154 31.03 14.37 42.83 4.30
318 319 4.816048 ACTCATGAGTATAGGACCTCCA 57.184 45.455 26.87 0.00 40.43 3.86
319 320 5.144159 ACTCATGAGTATAGGACCTCCAA 57.856 43.478 26.87 0.00 40.43 3.53
320 321 5.721225 ACTCATGAGTATAGGACCTCCAAT 58.279 41.667 26.87 0.00 40.43 3.16
321 322 6.864421 ACTCATGAGTATAGGACCTCCAATA 58.136 40.000 26.87 0.00 40.43 1.90
322 323 6.722129 ACTCATGAGTATAGGACCTCCAATAC 59.278 42.308 26.87 0.57 40.43 1.89
323 324 5.710567 TCATGAGTATAGGACCTCCAATACG 59.289 44.000 0.00 0.00 38.89 3.06
324 325 4.404640 TGAGTATAGGACCTCCAATACGG 58.595 47.826 0.00 0.00 38.89 4.02
325 326 4.105217 TGAGTATAGGACCTCCAATACGGA 59.895 45.833 0.00 0.00 43.61 4.69
332 333 4.411164 TCCAATACGGAGGCCCAT 57.589 55.556 0.00 0.00 39.64 4.00
333 334 3.562141 TCCAATACGGAGGCCCATA 57.438 52.632 0.00 0.00 39.64 2.74
334 335 1.809133 TCCAATACGGAGGCCCATAA 58.191 50.000 0.00 0.00 39.64 1.90
335 336 2.344592 TCCAATACGGAGGCCCATAAT 58.655 47.619 0.00 0.00 39.64 1.28
336 337 2.304761 TCCAATACGGAGGCCCATAATC 59.695 50.000 0.00 0.00 39.64 1.75
337 338 2.305927 CCAATACGGAGGCCCATAATCT 59.694 50.000 0.00 0.00 36.56 2.40
338 339 3.600388 CAATACGGAGGCCCATAATCTC 58.400 50.000 0.00 0.00 0.00 2.75
339 340 1.254026 TACGGAGGCCCATAATCTCG 58.746 55.000 0.00 0.00 0.00 4.04
340 341 1.374758 CGGAGGCCCATAATCTCGC 60.375 63.158 0.00 0.00 0.00 5.03
341 342 1.754745 GGAGGCCCATAATCTCGCA 59.245 57.895 0.00 0.00 0.00 5.10
342 343 0.108585 GGAGGCCCATAATCTCGCAA 59.891 55.000 0.00 0.00 0.00 4.85
343 344 1.476833 GGAGGCCCATAATCTCGCAAA 60.477 52.381 0.00 0.00 0.00 3.68
344 345 1.876156 GAGGCCCATAATCTCGCAAAG 59.124 52.381 0.00 0.00 0.00 2.77
345 346 0.312102 GGCCCATAATCTCGCAAAGC 59.688 55.000 0.00 0.00 0.00 3.51
346 347 1.024271 GCCCATAATCTCGCAAAGCA 58.976 50.000 0.00 0.00 0.00 3.91
347 348 1.610522 GCCCATAATCTCGCAAAGCAT 59.389 47.619 0.00 0.00 0.00 3.79
348 349 2.606308 GCCCATAATCTCGCAAAGCATG 60.606 50.000 0.00 0.00 0.00 4.06
361 362 4.037690 GCAAAGCATGCGTTATCTTTAGG 58.962 43.478 18.56 5.24 46.87 2.69
362 363 4.601019 CAAAGCATGCGTTATCTTTAGGG 58.399 43.478 18.56 0.00 0.00 3.53
363 364 3.560636 AGCATGCGTTATCTTTAGGGT 57.439 42.857 13.01 0.00 0.00 4.34
364 365 3.886123 AGCATGCGTTATCTTTAGGGTT 58.114 40.909 13.01 0.00 0.00 4.11
365 366 4.270008 AGCATGCGTTATCTTTAGGGTTT 58.730 39.130 13.01 0.00 0.00 3.27
366 367 4.096382 AGCATGCGTTATCTTTAGGGTTTG 59.904 41.667 13.01 0.00 0.00 2.93
367 368 4.733523 GCATGCGTTATCTTTAGGGTTTGG 60.734 45.833 0.00 0.00 0.00 3.28
368 369 2.750712 TGCGTTATCTTTAGGGTTTGGC 59.249 45.455 0.00 0.00 0.00 4.52
369 370 2.098607 GCGTTATCTTTAGGGTTTGGCC 59.901 50.000 0.00 0.00 0.00 5.36
370 371 2.353579 CGTTATCTTTAGGGTTTGGCCG 59.646 50.000 0.00 0.00 38.44 6.13
371 372 3.613030 GTTATCTTTAGGGTTTGGCCGA 58.387 45.455 0.00 0.00 38.44 5.54
372 373 2.124277 ATCTTTAGGGTTTGGCCGAC 57.876 50.000 0.00 0.00 38.44 4.79
373 374 0.766131 TCTTTAGGGTTTGGCCGACA 59.234 50.000 10.79 0.00 38.44 4.35
374 375 0.879090 CTTTAGGGTTTGGCCGACAC 59.121 55.000 10.79 7.26 38.44 3.67
375 376 0.183014 TTTAGGGTTTGGCCGACACA 59.817 50.000 13.20 0.00 38.44 3.72
376 377 0.535553 TTAGGGTTTGGCCGACACAC 60.536 55.000 13.20 6.75 38.44 3.82
377 378 1.412453 TAGGGTTTGGCCGACACACT 61.412 55.000 13.20 12.99 38.44 3.55
378 379 1.826487 GGGTTTGGCCGACACACTT 60.826 57.895 10.79 0.00 38.44 3.16
379 380 1.358759 GGTTTGGCCGACACACTTG 59.641 57.895 10.79 0.00 30.52 3.16
380 381 1.358759 GTTTGGCCGACACACTTGG 59.641 57.895 0.00 0.00 0.00 3.61
384 385 3.876300 GCCGACACACTTGGCTAG 58.124 61.111 0.00 0.00 45.51 3.42
385 386 1.741770 GCCGACACACTTGGCTAGG 60.742 63.158 0.20 0.00 45.51 3.02
386 387 1.972198 CCGACACACTTGGCTAGGA 59.028 57.895 0.20 0.00 0.00 2.94
387 388 0.389948 CCGACACACTTGGCTAGGAC 60.390 60.000 0.20 0.00 0.00 3.85
388 389 0.317160 CGACACACTTGGCTAGGACA 59.683 55.000 0.20 0.00 0.00 4.02
389 390 1.270094 CGACACACTTGGCTAGGACAA 60.270 52.381 0.20 0.00 0.00 3.18
390 391 2.143925 GACACACTTGGCTAGGACAAC 58.856 52.381 0.20 0.00 0.00 3.32
391 392 1.202770 ACACACTTGGCTAGGACAACC 60.203 52.381 0.20 0.00 0.00 3.77
392 393 0.400594 ACACTTGGCTAGGACAACCC 59.599 55.000 0.20 0.00 36.73 4.11
393 394 0.673644 CACTTGGCTAGGACAACCCG 60.674 60.000 0.20 0.00 40.87 5.28
394 395 1.078426 CTTGGCTAGGACAACCCGG 60.078 63.158 0.00 0.00 40.87 5.73
395 396 3.262448 TTGGCTAGGACAACCCGGC 62.262 63.158 0.00 0.00 40.87 6.13
396 397 4.832608 GGCTAGGACAACCCGGCG 62.833 72.222 0.00 0.00 40.87 6.46
397 398 3.766691 GCTAGGACAACCCGGCGA 61.767 66.667 9.30 0.00 40.87 5.54
398 399 3.090219 GCTAGGACAACCCGGCGAT 62.090 63.158 9.30 0.00 40.87 4.58
399 400 1.067582 CTAGGACAACCCGGCGATC 59.932 63.158 9.30 0.00 40.87 3.69
400 401 1.380785 TAGGACAACCCGGCGATCT 60.381 57.895 9.30 0.00 40.87 2.75
401 402 0.974010 TAGGACAACCCGGCGATCTT 60.974 55.000 9.30 0.00 40.87 2.40
402 403 1.814169 GGACAACCCGGCGATCTTC 60.814 63.158 9.30 0.00 0.00 2.87
403 404 1.218316 GACAACCCGGCGATCTTCT 59.782 57.895 9.30 0.00 0.00 2.85
404 405 0.391263 GACAACCCGGCGATCTTCTT 60.391 55.000 9.30 0.00 0.00 2.52
405 406 0.036306 ACAACCCGGCGATCTTCTTT 59.964 50.000 9.30 0.00 0.00 2.52
406 407 1.165270 CAACCCGGCGATCTTCTTTT 58.835 50.000 9.30 0.00 0.00 2.27
407 408 1.539827 CAACCCGGCGATCTTCTTTTT 59.460 47.619 9.30 0.00 0.00 1.94
408 409 1.165270 ACCCGGCGATCTTCTTTTTG 58.835 50.000 9.30 0.00 0.00 2.44
409 410 1.165270 CCCGGCGATCTTCTTTTTGT 58.835 50.000 9.30 0.00 0.00 2.83
410 411 2.289819 ACCCGGCGATCTTCTTTTTGTA 60.290 45.455 9.30 0.00 0.00 2.41
411 412 2.095372 CCCGGCGATCTTCTTTTTGTAC 59.905 50.000 9.30 0.00 0.00 2.90
412 413 2.095372 CCGGCGATCTTCTTTTTGTACC 59.905 50.000 9.30 0.00 0.00 3.34
413 414 3.000727 CGGCGATCTTCTTTTTGTACCT 58.999 45.455 0.00 0.00 0.00 3.08
414 415 4.178540 CGGCGATCTTCTTTTTGTACCTA 58.821 43.478 0.00 0.00 0.00 3.08
415 416 4.809426 CGGCGATCTTCTTTTTGTACCTAT 59.191 41.667 0.00 0.00 0.00 2.57
416 417 5.276868 CGGCGATCTTCTTTTTGTACCTATG 60.277 44.000 0.00 0.00 0.00 2.23
417 418 5.815740 GGCGATCTTCTTTTTGTACCTATGA 59.184 40.000 0.00 0.00 0.00 2.15
418 419 6.315393 GGCGATCTTCTTTTTGTACCTATGAA 59.685 38.462 0.00 0.00 0.00 2.57
419 420 7.180748 GCGATCTTCTTTTTGTACCTATGAAC 58.819 38.462 0.00 0.00 0.00 3.18
420 421 7.148474 GCGATCTTCTTTTTGTACCTATGAACA 60.148 37.037 0.00 0.00 0.00 3.18
421 422 8.883731 CGATCTTCTTTTTGTACCTATGAACAT 58.116 33.333 0.00 0.00 0.00 2.71
449 450 8.846943 TGATTCAGTAATAAAGCTTTGTGAGA 57.153 30.769 22.02 8.99 0.00 3.27
450 451 9.453572 TGATTCAGTAATAAAGCTTTGTGAGAT 57.546 29.630 22.02 3.69 0.00 2.75
453 454 9.507329 TTCAGTAATAAAGCTTTGTGAGATTCT 57.493 29.630 22.02 9.08 31.52 2.40
454 455 9.155975 TCAGTAATAAAGCTTTGTGAGATTCTC 57.844 33.333 22.02 6.73 31.52 2.87
455 456 8.939929 CAGTAATAAAGCTTTGTGAGATTCTCA 58.060 33.333 22.02 12.38 38.25 3.27
456 457 9.507329 AGTAATAAAGCTTTGTGAGATTCTCAA 57.493 29.630 22.02 6.25 42.46 3.02
568 569 2.285144 CCCCTCCACCTAACCCGT 60.285 66.667 0.00 0.00 0.00 5.28
610 616 1.077068 CCCGCCTGTCTCTCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
612 618 1.101049 CCGCCTGTCTCTCTCTCTCC 61.101 65.000 0.00 0.00 0.00 3.71
618 624 0.185175 GTCTCTCTCTCTCCCCCTCC 59.815 65.000 0.00 0.00 0.00 4.30
713 719 0.324275 GAGCAGGACTCCACTCTCCT 60.324 60.000 9.80 0.00 39.75 3.69
732 750 4.697102 CCCCCTCCTCACTCTCTC 57.303 66.667 0.00 0.00 0.00 3.20
733 751 2.015081 CCCCCTCCTCACTCTCTCT 58.985 63.158 0.00 0.00 0.00 3.10
749 767 5.000012 TCTCTCTTTCTTGGATCGTAAGC 58.000 43.478 4.04 0.00 37.18 3.09
752 770 5.734720 TCTCTTTCTTGGATCGTAAGCAAT 58.265 37.500 4.04 0.00 37.18 3.56
753 771 5.812642 TCTCTTTCTTGGATCGTAAGCAATC 59.187 40.000 4.04 0.00 37.18 2.67
754 772 4.566759 TCTTTCTTGGATCGTAAGCAATCG 59.433 41.667 4.04 0.00 37.18 3.34
804 826 1.401905 GGAGGACATTTTGATCGGTGC 59.598 52.381 0.00 0.00 0.00 5.01
811 833 2.791383 TTTTGATCGGTGCTGGTTTG 57.209 45.000 0.00 0.00 0.00 2.93
821 843 3.683937 CTGGTTTGCCAAGGCGGG 61.684 66.667 6.60 0.00 45.51 6.13
945 967 0.744874 TTCTCGCAGTAATCGGGGAG 59.255 55.000 0.00 0.00 44.95 4.30
989 1011 1.202222 CGGTGCCATCTGAATTTCTGC 60.202 52.381 0.00 0.00 0.00 4.26
1057 1079 1.831286 CAGATGGCCAGCCCCAATC 60.831 63.158 19.48 4.51 38.61 2.67
1067 1089 0.738389 AGCCCCAATCGTAAATTGCG 59.262 50.000 0.00 0.00 0.00 4.85
1074 1096 1.583054 ATCGTAAATTGCGAGCCCTC 58.417 50.000 12.15 0.00 41.83 4.30
1075 1097 0.535335 TCGTAAATTGCGAGCCCTCT 59.465 50.000 1.31 0.00 34.11 3.69
1076 1098 1.066430 TCGTAAATTGCGAGCCCTCTT 60.066 47.619 1.31 0.00 34.11 2.85
1077 1099 1.737793 CGTAAATTGCGAGCCCTCTTT 59.262 47.619 0.00 0.00 0.00 2.52
1561 1583 1.267882 GCTCACGCCCGCTTAAATTAC 60.268 52.381 0.00 0.00 0.00 1.89
1564 1586 0.741927 ACGCCCGCTTAAATTACGCT 60.742 50.000 0.18 0.00 0.00 5.07
1576 1598 4.859629 AAATTACGCTGCTGCTTAGTAC 57.140 40.909 14.03 0.00 36.97 2.73
1580 1604 1.134560 ACGCTGCTGCTTAGTACTACC 59.865 52.381 14.03 0.00 36.97 3.18
1601 1625 2.466982 CGCAATGGCTGATGCTCGT 61.467 57.895 7.82 0.00 40.39 4.18
1606 1630 1.374343 ATGGCTGATGCTCGTTGCTG 61.374 55.000 5.00 0.00 43.37 4.41
1758 1782 4.104417 GACAGCGACTCGAGCGGT 62.104 66.667 22.07 22.07 45.03 5.68
1761 1785 3.671411 AGCGACTCGAGCGGTGTT 61.671 61.111 25.27 2.13 38.14 3.32
2013 2037 2.815308 CCGACGGATCCCTGGAAG 59.185 66.667 8.64 0.00 0.00 3.46
2207 2244 3.352990 TAGTGCCATTTCCGCCCCC 62.353 63.158 0.00 0.00 0.00 5.40
2237 2274 1.204704 GCCATTTCCTTTTTCCTCCCG 59.795 52.381 0.00 0.00 0.00 5.14
2246 2283 2.865119 TTTTCCTCCCGTAAACCCTC 57.135 50.000 0.00 0.00 0.00 4.30
2289 2328 5.695851 AATGTTCAAGTTAAGCTGGACTG 57.304 39.130 3.25 0.00 0.00 3.51
2302 2341 4.137543 AGCTGGACTGAAGTGTAAAAAGG 58.862 43.478 0.00 0.00 0.00 3.11
2303 2342 3.304726 GCTGGACTGAAGTGTAAAAAGGC 60.305 47.826 0.00 0.00 0.00 4.35
2309 2350 2.223745 GAAGTGTAAAAAGGCCCACGA 58.776 47.619 0.00 0.00 0.00 4.35
2473 2514 4.431131 ATTGACCGGGCTGGCCTG 62.431 66.667 18.81 14.44 43.94 4.85
2679 2744 3.804193 CCTCGCGCTTTCCTTGCC 61.804 66.667 5.56 0.00 0.00 4.52
2695 2760 2.554806 TGCCATTCTCGTACGTAGTG 57.445 50.000 16.05 11.29 45.73 2.74
2700 2768 0.806868 TTCTCGTACGTAGTGGCAGG 59.193 55.000 16.05 0.00 45.73 4.85
2724 2792 4.353437 ACCGCCGTCGAACCTGAC 62.353 66.667 0.00 0.00 38.10 3.51
2745 2813 4.409218 GCGTCGTGCTCCGGTACA 62.409 66.667 0.00 0.00 41.73 2.90
2746 2814 2.256158 CGTCGTGCTCCGGTACAA 59.744 61.111 0.00 0.00 37.11 2.41
2748 2816 1.582968 GTCGTGCTCCGGTACAAGA 59.417 57.895 0.00 6.17 37.11 3.02
2759 2833 5.744666 TCCGGTACAAGAAAAGAAACAAG 57.255 39.130 0.00 0.00 0.00 3.16
2881 2958 2.778679 GTGCCAATCGAGTGCGTC 59.221 61.111 7.49 0.00 38.98 5.19
2894 2971 1.895798 AGTGCGTCTTGGAAGATCTGA 59.104 47.619 0.00 0.00 37.39 3.27
2960 3049 3.339093 GTGGTGGGGGAAGGAGGG 61.339 72.222 0.00 0.00 0.00 4.30
2968 3057 0.691413 GGGGAAGGAGGGAAGATCGT 60.691 60.000 0.00 0.00 0.00 3.73
2977 3066 2.655685 GAAGATCGTCGGAGCCGC 60.656 66.667 3.59 0.00 39.59 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.687102 TACCTGGGCGTGACACGG 61.687 66.667 27.86 13.99 42.82 4.94
2 3 2.431942 GTACCTGGGCGTGACACG 60.432 66.667 23.43 23.43 45.88 4.49
3 4 2.431942 CGTACCTGGGCGTGACAC 60.432 66.667 0.00 0.00 0.00 3.67
4 5 2.030490 AAACGTACCTGGGCGTGACA 62.030 55.000 16.84 0.00 41.42 3.58
5 6 1.301165 AAACGTACCTGGGCGTGAC 60.301 57.895 16.84 0.00 41.42 3.67
6 7 1.301087 CAAACGTACCTGGGCGTGA 60.301 57.895 16.84 0.00 41.42 4.35
7 8 2.322081 CCAAACGTACCTGGGCGTG 61.322 63.158 16.84 7.63 41.42 5.34
8 9 2.031465 CCAAACGTACCTGGGCGT 59.969 61.111 11.75 11.75 43.64 5.68
9 10 3.428282 GCCAAACGTACCTGGGCG 61.428 66.667 11.88 10.58 34.56 6.13
10 11 3.428282 CGCCAAACGTACCTGGGC 61.428 66.667 11.88 3.98 41.20 5.36
11 12 3.428282 GCGCCAAACGTACCTGGG 61.428 66.667 11.88 0.00 46.11 4.45
12 13 2.666862 TGCGCCAAACGTACCTGG 60.667 61.111 4.18 6.84 46.11 4.45
13 14 1.503818 AACTGCGCCAAACGTACCTG 61.504 55.000 4.18 0.00 46.11 4.00
14 15 1.227734 AACTGCGCCAAACGTACCT 60.228 52.632 4.18 0.00 46.11 3.08
15 16 1.082366 CAACTGCGCCAAACGTACC 60.082 57.895 4.18 0.00 46.11 3.34
16 17 1.082366 CCAACTGCGCCAAACGTAC 60.082 57.895 4.18 0.00 46.11 3.67
17 18 1.524165 ACCAACTGCGCCAAACGTA 60.524 52.632 4.18 0.00 46.11 3.57
18 19 2.826738 ACCAACTGCGCCAAACGT 60.827 55.556 4.18 0.00 46.11 3.99
20 21 1.588667 CACACCAACTGCGCCAAAC 60.589 57.895 4.18 0.00 0.00 2.93
21 22 2.780094 CCACACCAACTGCGCCAAA 61.780 57.895 4.18 0.00 0.00 3.28
22 23 3.215568 CCACACCAACTGCGCCAA 61.216 61.111 4.18 0.00 0.00 4.52
23 24 4.497984 ACCACACCAACTGCGCCA 62.498 61.111 4.18 0.00 0.00 5.69
24 25 2.781158 AAACCACACCAACTGCGCC 61.781 57.895 4.18 0.00 0.00 6.53
25 26 1.588667 CAAACCACACCAACTGCGC 60.589 57.895 0.00 0.00 0.00 6.09
26 27 1.588667 GCAAACCACACCAACTGCG 60.589 57.895 0.00 0.00 0.00 5.18
27 28 0.528249 CTGCAAACCACACCAACTGC 60.528 55.000 0.00 0.00 0.00 4.40
28 29 0.102844 CCTGCAAACCACACCAACTG 59.897 55.000 0.00 0.00 0.00 3.16
29 30 1.042559 CCCTGCAAACCACACCAACT 61.043 55.000 0.00 0.00 0.00 3.16
30 31 1.040339 TCCCTGCAAACCACACCAAC 61.040 55.000 0.00 0.00 0.00 3.77
31 32 0.105760 ATCCCTGCAAACCACACCAA 60.106 50.000 0.00 0.00 0.00 3.67
32 33 0.827089 CATCCCTGCAAACCACACCA 60.827 55.000 0.00 0.00 0.00 4.17
33 34 0.539438 TCATCCCTGCAAACCACACC 60.539 55.000 0.00 0.00 0.00 4.16
34 35 0.883833 CTCATCCCTGCAAACCACAC 59.116 55.000 0.00 0.00 0.00 3.82
35 36 0.770499 TCTCATCCCTGCAAACCACA 59.230 50.000 0.00 0.00 0.00 4.17
36 37 1.003580 TCTCTCATCCCTGCAAACCAC 59.996 52.381 0.00 0.00 0.00 4.16
37 38 1.361204 TCTCTCATCCCTGCAAACCA 58.639 50.000 0.00 0.00 0.00 3.67
38 39 2.295885 CATCTCTCATCCCTGCAAACC 58.704 52.381 0.00 0.00 0.00 3.27
39 40 2.996631 ACATCTCTCATCCCTGCAAAC 58.003 47.619 0.00 0.00 0.00 2.93
40 41 3.726557 AACATCTCTCATCCCTGCAAA 57.273 42.857 0.00 0.00 0.00 3.68
41 42 3.245016 ACAAACATCTCTCATCCCTGCAA 60.245 43.478 0.00 0.00 0.00 4.08
42 43 2.306805 ACAAACATCTCTCATCCCTGCA 59.693 45.455 0.00 0.00 0.00 4.41
43 44 2.996631 ACAAACATCTCTCATCCCTGC 58.003 47.619 0.00 0.00 0.00 4.85
44 45 4.582869 TGAACAAACATCTCTCATCCCTG 58.417 43.478 0.00 0.00 0.00 4.45
45 46 4.916041 TGAACAAACATCTCTCATCCCT 57.084 40.909 0.00 0.00 0.00 4.20
46 47 4.337555 CCATGAACAAACATCTCTCATCCC 59.662 45.833 0.00 0.00 0.00 3.85
47 48 4.337555 CCCATGAACAAACATCTCTCATCC 59.662 45.833 0.00 0.00 0.00 3.51
48 49 5.188434 TCCCATGAACAAACATCTCTCATC 58.812 41.667 0.00 0.00 0.00 2.92
49 50 5.183530 TCCCATGAACAAACATCTCTCAT 57.816 39.130 0.00 0.00 0.00 2.90
50 51 4.582869 CTCCCATGAACAAACATCTCTCA 58.417 43.478 0.00 0.00 0.00 3.27
51 52 3.376546 GCTCCCATGAACAAACATCTCTC 59.623 47.826 0.00 0.00 0.00 3.20
52 53 3.350833 GCTCCCATGAACAAACATCTCT 58.649 45.455 0.00 0.00 0.00 3.10
53 54 2.096496 CGCTCCCATGAACAAACATCTC 59.904 50.000 0.00 0.00 0.00 2.75
54 55 2.086869 CGCTCCCATGAACAAACATCT 58.913 47.619 0.00 0.00 0.00 2.90
55 56 1.812571 ACGCTCCCATGAACAAACATC 59.187 47.619 0.00 0.00 0.00 3.06
56 57 1.812571 GACGCTCCCATGAACAAACAT 59.187 47.619 0.00 0.00 0.00 2.71
57 58 1.234821 GACGCTCCCATGAACAAACA 58.765 50.000 0.00 0.00 0.00 2.83
58 59 1.197721 CTGACGCTCCCATGAACAAAC 59.802 52.381 0.00 0.00 0.00 2.93
59 60 1.522668 CTGACGCTCCCATGAACAAA 58.477 50.000 0.00 0.00 0.00 2.83
60 61 0.955428 GCTGACGCTCCCATGAACAA 60.955 55.000 0.00 0.00 0.00 2.83
61 62 1.375908 GCTGACGCTCCCATGAACA 60.376 57.895 0.00 0.00 0.00 3.18
62 63 1.078848 AGCTGACGCTCCCATGAAC 60.079 57.895 0.00 0.00 45.15 3.18
63 64 3.392228 AGCTGACGCTCCCATGAA 58.608 55.556 0.00 0.00 45.15 2.57
72 73 3.470562 CTTTAAAAACGAGAGCTGACGC 58.529 45.455 0.00 0.00 0.00 5.19
73 74 3.739300 TCCTTTAAAAACGAGAGCTGACG 59.261 43.478 0.00 0.00 0.00 4.35
74 75 4.750598 AGTCCTTTAAAAACGAGAGCTGAC 59.249 41.667 0.00 0.00 0.00 3.51
75 76 4.750098 CAGTCCTTTAAAAACGAGAGCTGA 59.250 41.667 0.00 0.00 0.00 4.26
76 77 4.611581 GCAGTCCTTTAAAAACGAGAGCTG 60.612 45.833 0.00 0.00 0.00 4.24
77 78 3.498777 GCAGTCCTTTAAAAACGAGAGCT 59.501 43.478 0.00 0.00 0.00 4.09
78 79 3.250040 TGCAGTCCTTTAAAAACGAGAGC 59.750 43.478 0.00 0.00 0.00 4.09
79 80 4.272504 TGTGCAGTCCTTTAAAAACGAGAG 59.727 41.667 0.00 0.00 0.00 3.20
80 81 4.193090 TGTGCAGTCCTTTAAAAACGAGA 58.807 39.130 0.00 0.00 0.00 4.04
81 82 4.545823 TGTGCAGTCCTTTAAAAACGAG 57.454 40.909 0.00 0.00 0.00 4.18
82 83 4.439016 GGTTGTGCAGTCCTTTAAAAACGA 60.439 41.667 0.00 0.00 0.00 3.85
83 84 3.794564 GGTTGTGCAGTCCTTTAAAAACG 59.205 43.478 0.00 0.00 0.00 3.60
84 85 4.116961 GGGTTGTGCAGTCCTTTAAAAAC 58.883 43.478 0.00 0.00 0.00 2.43
85 86 3.133183 GGGGTTGTGCAGTCCTTTAAAAA 59.867 43.478 0.00 0.00 0.00 1.94
86 87 2.696187 GGGGTTGTGCAGTCCTTTAAAA 59.304 45.455 0.00 0.00 0.00 1.52
87 88 2.312390 GGGGTTGTGCAGTCCTTTAAA 58.688 47.619 0.00 0.00 0.00 1.52
88 89 1.479757 GGGGGTTGTGCAGTCCTTTAA 60.480 52.381 0.00 0.00 0.00 1.52
89 90 0.111639 GGGGGTTGTGCAGTCCTTTA 59.888 55.000 0.00 0.00 0.00 1.85
90 91 1.152546 GGGGGTTGTGCAGTCCTTT 60.153 57.895 0.00 0.00 0.00 3.11
91 92 1.943730 TTGGGGGTTGTGCAGTCCTT 61.944 55.000 0.00 0.00 0.00 3.36
92 93 2.357593 CTTGGGGGTTGTGCAGTCCT 62.358 60.000 0.00 0.00 0.00 3.85
93 94 1.903404 CTTGGGGGTTGTGCAGTCC 60.903 63.158 0.00 0.00 0.00 3.85
94 95 1.152756 ACTTGGGGGTTGTGCAGTC 60.153 57.895 0.00 0.00 0.00 3.51
95 96 1.455587 CACTTGGGGGTTGTGCAGT 60.456 57.895 0.00 0.00 0.00 4.40
96 97 3.447040 CACTTGGGGGTTGTGCAG 58.553 61.111 0.00 0.00 0.00 4.41
99 100 0.400213 TCTAGCACTTGGGGGTTGTG 59.600 55.000 0.00 0.00 35.08 3.33
100 101 1.073923 CTTCTAGCACTTGGGGGTTGT 59.926 52.381 0.00 0.00 0.00 3.32
101 102 1.826385 CTTCTAGCACTTGGGGGTTG 58.174 55.000 0.00 0.00 0.00 3.77
102 103 0.038310 GCTTCTAGCACTTGGGGGTT 59.962 55.000 0.00 0.00 41.89 4.11
103 104 1.685820 GCTTCTAGCACTTGGGGGT 59.314 57.895 0.00 0.00 41.89 4.95
104 105 4.645809 GCTTCTAGCACTTGGGGG 57.354 61.111 0.00 0.00 41.89 5.40
120 121 1.153549 CCTCCCGAACAGCTAGTGC 60.154 63.158 0.00 0.00 40.05 4.40
121 122 1.153549 GCCTCCCGAACAGCTAGTG 60.154 63.158 0.00 0.00 0.00 2.74
122 123 0.978146 ATGCCTCCCGAACAGCTAGT 60.978 55.000 0.00 0.00 0.00 2.57
123 124 0.179000 AATGCCTCCCGAACAGCTAG 59.821 55.000 0.00 0.00 0.00 3.42
124 125 1.412710 CTAATGCCTCCCGAACAGCTA 59.587 52.381 0.00 0.00 0.00 3.32
125 126 0.179000 CTAATGCCTCCCGAACAGCT 59.821 55.000 0.00 0.00 0.00 4.24
126 127 1.440145 GCTAATGCCTCCCGAACAGC 61.440 60.000 0.00 0.00 0.00 4.40
127 128 0.107703 TGCTAATGCCTCCCGAACAG 60.108 55.000 0.00 0.00 38.71 3.16
128 129 0.392461 GTGCTAATGCCTCCCGAACA 60.392 55.000 0.00 0.00 38.71 3.18
129 130 0.107654 AGTGCTAATGCCTCCCGAAC 60.108 55.000 0.00 0.00 38.71 3.95
130 131 0.618458 AAGTGCTAATGCCTCCCGAA 59.382 50.000 0.00 0.00 38.71 4.30
131 132 0.618458 AAAGTGCTAATGCCTCCCGA 59.382 50.000 0.00 0.00 38.71 5.14
132 133 1.017387 GAAAGTGCTAATGCCTCCCG 58.983 55.000 0.00 0.00 38.71 5.14
133 134 2.019984 CTGAAAGTGCTAATGCCTCCC 58.980 52.381 0.00 0.00 38.71 4.30
134 135 2.991250 TCTGAAAGTGCTAATGCCTCC 58.009 47.619 0.00 0.00 38.71 4.30
135 136 4.256920 TCTTCTGAAAGTGCTAATGCCTC 58.743 43.478 0.00 0.00 38.71 4.70
136 137 4.292186 TCTTCTGAAAGTGCTAATGCCT 57.708 40.909 0.00 0.00 38.71 4.75
137 138 4.880696 AGATCTTCTGAAAGTGCTAATGCC 59.119 41.667 0.00 0.00 38.71 4.40
138 139 5.816777 AGAGATCTTCTGAAAGTGCTAATGC 59.183 40.000 0.00 0.00 33.93 3.56
142 143 9.579932 TGATATAGAGATCTTCTGAAAGTGCTA 57.420 33.333 0.00 0.00 36.61 3.49
143 144 8.476064 TGATATAGAGATCTTCTGAAAGTGCT 57.524 34.615 0.00 0.00 36.61 4.40
144 145 8.977505 GTTGATATAGAGATCTTCTGAAAGTGC 58.022 37.037 0.00 0.00 36.61 4.40
145 146 9.474920 GGTTGATATAGAGATCTTCTGAAAGTG 57.525 37.037 0.00 0.00 36.61 3.16
146 147 8.356657 CGGTTGATATAGAGATCTTCTGAAAGT 58.643 37.037 0.00 0.00 36.61 2.66
147 148 8.356657 ACGGTTGATATAGAGATCTTCTGAAAG 58.643 37.037 0.00 0.00 36.61 2.62
148 149 8.239038 ACGGTTGATATAGAGATCTTCTGAAA 57.761 34.615 0.00 0.00 36.61 2.69
149 150 7.825331 ACGGTTGATATAGAGATCTTCTGAA 57.175 36.000 0.00 0.00 36.61 3.02
150 151 7.825331 AACGGTTGATATAGAGATCTTCTGA 57.175 36.000 0.00 0.00 36.61 3.27
151 152 9.400638 GTAAACGGTTGATATAGAGATCTTCTG 57.599 37.037 0.00 0.00 36.61 3.02
152 153 9.357161 AGTAAACGGTTGATATAGAGATCTTCT 57.643 33.333 0.00 0.00 40.06 2.85
153 154 9.968870 AAGTAAACGGTTGATATAGAGATCTTC 57.031 33.333 0.00 0.00 0.00 2.87
154 155 9.751542 CAAGTAAACGGTTGATATAGAGATCTT 57.248 33.333 0.00 0.00 0.00 2.40
155 156 8.915036 ACAAGTAAACGGTTGATATAGAGATCT 58.085 33.333 0.00 0.00 0.00 2.75
156 157 9.530633 AACAAGTAAACGGTTGATATAGAGATC 57.469 33.333 0.00 0.00 0.00 2.75
157 158 9.314321 CAACAAGTAAACGGTTGATATAGAGAT 57.686 33.333 12.45 0.00 43.41 2.75
158 159 7.277098 GCAACAAGTAAACGGTTGATATAGAGA 59.723 37.037 18.54 0.00 43.41 3.10
159 160 7.399523 GCAACAAGTAAACGGTTGATATAGAG 58.600 38.462 18.54 0.00 43.41 2.43
160 161 6.314400 GGCAACAAGTAAACGGTTGATATAGA 59.686 38.462 18.54 0.00 43.41 1.98
161 162 6.315393 AGGCAACAAGTAAACGGTTGATATAG 59.685 38.462 18.54 0.00 43.41 1.31
162 163 6.174760 AGGCAACAAGTAAACGGTTGATATA 58.825 36.000 18.54 0.00 43.41 0.86
163 164 5.007682 AGGCAACAAGTAAACGGTTGATAT 58.992 37.500 18.54 6.15 43.41 1.63
164 165 4.391155 AGGCAACAAGTAAACGGTTGATA 58.609 39.130 18.54 0.00 43.41 2.15
165 166 3.219281 AGGCAACAAGTAAACGGTTGAT 58.781 40.909 18.54 8.12 43.41 2.57
166 167 2.614983 GAGGCAACAAGTAAACGGTTGA 59.385 45.455 18.54 0.00 43.41 3.18
167 168 2.287368 GGAGGCAACAAGTAAACGGTTG 60.287 50.000 0.00 13.10 43.53 3.77
168 169 1.951602 GGAGGCAACAAGTAAACGGTT 59.048 47.619 0.00 0.00 41.41 4.44
169 170 1.601166 GGAGGCAACAAGTAAACGGT 58.399 50.000 0.00 0.00 41.41 4.83
170 171 0.515564 CGGAGGCAACAAGTAAACGG 59.484 55.000 0.00 0.00 41.41 4.44
171 172 1.504359 TCGGAGGCAACAAGTAAACG 58.496 50.000 0.00 0.00 41.41 3.60
172 173 3.821841 CAATCGGAGGCAACAAGTAAAC 58.178 45.455 0.00 0.00 41.41 2.01
173 174 2.227865 GCAATCGGAGGCAACAAGTAAA 59.772 45.455 0.13 0.00 41.41 2.01
174 175 1.810151 GCAATCGGAGGCAACAAGTAA 59.190 47.619 0.13 0.00 41.41 2.24
175 176 1.448985 GCAATCGGAGGCAACAAGTA 58.551 50.000 0.13 0.00 41.41 2.24
176 177 1.577328 CGCAATCGGAGGCAACAAGT 61.577 55.000 5.46 0.00 41.41 3.16
177 178 1.135315 CGCAATCGGAGGCAACAAG 59.865 57.895 5.46 0.00 41.41 3.16
178 179 1.298157 CTCGCAATCGGAGGCAACAA 61.298 55.000 5.46 0.00 35.84 2.83
179 180 1.741401 CTCGCAATCGGAGGCAACA 60.741 57.895 5.46 0.00 35.84 3.33
180 181 2.464459 CCTCGCAATCGGAGGCAAC 61.464 63.158 5.46 0.00 36.13 4.17
181 182 2.125147 CCTCGCAATCGGAGGCAA 60.125 61.111 5.46 0.00 36.13 4.52
182 183 3.390521 ACCTCGCAATCGGAGGCA 61.391 61.111 7.72 0.00 36.87 4.75
183 184 2.892425 CACCTCGCAATCGGAGGC 60.892 66.667 7.72 0.00 36.87 4.70
184 185 2.202932 CCACCTCGCAATCGGAGG 60.203 66.667 6.30 6.30 38.27 4.30
185 186 1.811266 CACCACCTCGCAATCGGAG 60.811 63.158 0.00 0.00 36.13 4.63
186 187 2.264480 CACCACCTCGCAATCGGA 59.736 61.111 0.00 0.00 36.13 4.55
187 188 2.233605 TACCACCACCTCGCAATCGG 62.234 60.000 0.00 0.00 36.13 4.18
188 189 0.806102 CTACCACCACCTCGCAATCG 60.806 60.000 0.00 0.00 0.00 3.34
189 190 0.535335 TCTACCACCACCTCGCAATC 59.465 55.000 0.00 0.00 0.00 2.67
190 191 1.134401 CATCTACCACCACCTCGCAAT 60.134 52.381 0.00 0.00 0.00 3.56
191 192 0.249120 CATCTACCACCACCTCGCAA 59.751 55.000 0.00 0.00 0.00 4.85
192 193 1.897423 CATCTACCACCACCTCGCA 59.103 57.895 0.00 0.00 0.00 5.10
193 194 1.521681 GCATCTACCACCACCTCGC 60.522 63.158 0.00 0.00 0.00 5.03
194 195 0.249120 TTGCATCTACCACCACCTCG 59.751 55.000 0.00 0.00 0.00 4.63
195 196 2.092968 TGATTGCATCTACCACCACCTC 60.093 50.000 0.00 0.00 0.00 3.85
196 197 1.915489 TGATTGCATCTACCACCACCT 59.085 47.619 0.00 0.00 0.00 4.00
197 198 2.092968 TCTGATTGCATCTACCACCACC 60.093 50.000 0.00 0.00 0.00 4.61
198 199 2.939103 GTCTGATTGCATCTACCACCAC 59.061 50.000 0.00 0.00 0.00 4.16
199 200 2.571202 TGTCTGATTGCATCTACCACCA 59.429 45.455 0.00 0.00 0.00 4.17
200 201 3.201290 CTGTCTGATTGCATCTACCACC 58.799 50.000 0.00 0.00 0.00 4.61
201 202 3.201290 CCTGTCTGATTGCATCTACCAC 58.799 50.000 0.00 0.00 0.00 4.16
202 203 2.171237 CCCTGTCTGATTGCATCTACCA 59.829 50.000 0.00 0.00 0.00 3.25
203 204 2.435805 TCCCTGTCTGATTGCATCTACC 59.564 50.000 0.00 0.00 0.00 3.18
204 205 3.827008 TCCCTGTCTGATTGCATCTAC 57.173 47.619 0.00 0.00 0.00 2.59
205 206 3.432749 GCTTCCCTGTCTGATTGCATCTA 60.433 47.826 0.00 0.00 0.00 1.98
206 207 2.683152 GCTTCCCTGTCTGATTGCATCT 60.683 50.000 0.00 0.00 0.00 2.90
207 208 1.674962 GCTTCCCTGTCTGATTGCATC 59.325 52.381 0.00 0.00 0.00 3.91
208 209 1.284198 AGCTTCCCTGTCTGATTGCAT 59.716 47.619 0.00 0.00 0.00 3.96
209 210 0.694771 AGCTTCCCTGTCTGATTGCA 59.305 50.000 0.00 0.00 0.00 4.08
210 211 1.339438 TGAGCTTCCCTGTCTGATTGC 60.339 52.381 0.00 0.00 0.00 3.56
211 212 2.630158 CTGAGCTTCCCTGTCTGATTG 58.370 52.381 0.00 0.00 0.00 2.67
212 213 1.065564 GCTGAGCTTCCCTGTCTGATT 60.066 52.381 0.00 0.00 0.00 2.57
213 214 0.540923 GCTGAGCTTCCCTGTCTGAT 59.459 55.000 0.00 0.00 0.00 2.90
214 215 0.833409 TGCTGAGCTTCCCTGTCTGA 60.833 55.000 5.83 0.00 0.00 3.27
215 216 0.391395 CTGCTGAGCTTCCCTGTCTG 60.391 60.000 5.83 0.00 0.00 3.51
216 217 0.543883 TCTGCTGAGCTTCCCTGTCT 60.544 55.000 5.83 0.00 0.00 3.41
217 218 0.322975 TTCTGCTGAGCTTCCCTGTC 59.677 55.000 5.83 0.00 0.00 3.51
218 219 0.990374 ATTCTGCTGAGCTTCCCTGT 59.010 50.000 5.83 0.00 0.00 4.00
219 220 2.125773 AATTCTGCTGAGCTTCCCTG 57.874 50.000 5.83 0.00 0.00 4.45
220 221 2.444421 CAAATTCTGCTGAGCTTCCCT 58.556 47.619 5.83 0.00 0.00 4.20
221 222 1.475682 CCAAATTCTGCTGAGCTTCCC 59.524 52.381 5.83 0.00 0.00 3.97
222 223 2.422832 CTCCAAATTCTGCTGAGCTTCC 59.577 50.000 5.83 0.00 0.00 3.46
223 224 2.159407 GCTCCAAATTCTGCTGAGCTTC 60.159 50.000 5.83 0.00 43.85 3.86
224 225 1.817447 GCTCCAAATTCTGCTGAGCTT 59.183 47.619 5.83 0.00 43.85 3.74
225 226 1.461559 GCTCCAAATTCTGCTGAGCT 58.538 50.000 5.83 0.00 43.85 4.09
226 227 0.455005 GGCTCCAAATTCTGCTGAGC 59.545 55.000 0.00 0.00 45.89 4.26
227 228 1.830279 TGGCTCCAAATTCTGCTGAG 58.170 50.000 0.00 0.00 0.00 3.35
228 229 2.494471 CAATGGCTCCAAATTCTGCTGA 59.506 45.455 0.00 0.00 0.00 4.26
229 230 2.232941 ACAATGGCTCCAAATTCTGCTG 59.767 45.455 0.00 0.00 0.00 4.41
230 231 2.494870 GACAATGGCTCCAAATTCTGCT 59.505 45.455 0.00 0.00 0.00 4.24
231 232 2.733227 CGACAATGGCTCCAAATTCTGC 60.733 50.000 0.00 0.00 0.00 4.26
232 233 2.749076 TCGACAATGGCTCCAAATTCTG 59.251 45.455 0.00 0.00 0.00 3.02
233 234 3.012518 CTCGACAATGGCTCCAAATTCT 58.987 45.455 0.00 0.00 0.00 2.40
234 235 2.098117 CCTCGACAATGGCTCCAAATTC 59.902 50.000 0.00 0.00 0.00 2.17
235 236 2.094675 CCTCGACAATGGCTCCAAATT 58.905 47.619 0.00 0.00 0.00 1.82
236 237 1.281867 TCCTCGACAATGGCTCCAAAT 59.718 47.619 0.00 0.00 0.00 2.32
237 238 0.690192 TCCTCGACAATGGCTCCAAA 59.310 50.000 0.00 0.00 0.00 3.28
238 239 0.690192 TTCCTCGACAATGGCTCCAA 59.310 50.000 0.00 0.00 0.00 3.53
239 240 0.690192 TTTCCTCGACAATGGCTCCA 59.310 50.000 0.00 0.00 0.00 3.86
240 241 1.943340 GATTTCCTCGACAATGGCTCC 59.057 52.381 0.00 0.00 0.00 4.70
241 242 2.632377 TGATTTCCTCGACAATGGCTC 58.368 47.619 0.00 0.00 0.00 4.70
242 243 2.787473 TGATTTCCTCGACAATGGCT 57.213 45.000 0.00 0.00 0.00 4.75
243 244 3.009723 TCTTGATTTCCTCGACAATGGC 58.990 45.455 0.00 0.00 0.00 4.40
244 245 4.256920 AGTCTTGATTTCCTCGACAATGG 58.743 43.478 0.00 0.00 0.00 3.16
245 246 6.333416 TCTAGTCTTGATTTCCTCGACAATG 58.667 40.000 0.00 0.00 0.00 2.82
246 247 6.531503 TCTAGTCTTGATTTCCTCGACAAT 57.468 37.500 0.00 0.00 0.00 2.71
247 248 5.622460 GCTCTAGTCTTGATTTCCTCGACAA 60.622 44.000 0.00 0.00 0.00 3.18
248 249 4.142359 GCTCTAGTCTTGATTTCCTCGACA 60.142 45.833 0.00 0.00 0.00 4.35
249 250 4.142359 TGCTCTAGTCTTGATTTCCTCGAC 60.142 45.833 0.00 0.00 0.00 4.20
250 251 4.017126 TGCTCTAGTCTTGATTTCCTCGA 58.983 43.478 0.00 0.00 0.00 4.04
251 252 4.377839 TGCTCTAGTCTTGATTTCCTCG 57.622 45.455 0.00 0.00 0.00 4.63
252 253 5.729510 AGTTGCTCTAGTCTTGATTTCCTC 58.270 41.667 0.00 0.00 0.00 3.71
253 254 5.753721 AGTTGCTCTAGTCTTGATTTCCT 57.246 39.130 0.00 0.00 0.00 3.36
254 255 5.813157 GGTAGTTGCTCTAGTCTTGATTTCC 59.187 44.000 0.00 0.00 0.00 3.13
255 256 6.635755 AGGTAGTTGCTCTAGTCTTGATTTC 58.364 40.000 0.00 0.00 0.00 2.17
256 257 6.613153 AGGTAGTTGCTCTAGTCTTGATTT 57.387 37.500 0.00 0.00 0.00 2.17
257 258 6.613153 AAGGTAGTTGCTCTAGTCTTGATT 57.387 37.500 0.00 0.00 0.00 2.57
258 259 6.613153 AAAGGTAGTTGCTCTAGTCTTGAT 57.387 37.500 0.00 0.00 0.00 2.57
259 260 7.719871 ATAAAGGTAGTTGCTCTAGTCTTGA 57.280 36.000 0.00 0.00 0.00 3.02
260 261 8.779354 AAATAAAGGTAGTTGCTCTAGTCTTG 57.221 34.615 0.00 0.00 0.00 3.02
261 262 8.594550 TGAAATAAAGGTAGTTGCTCTAGTCTT 58.405 33.333 0.00 0.00 0.00 3.01
262 263 8.135382 TGAAATAAAGGTAGTTGCTCTAGTCT 57.865 34.615 0.00 0.00 0.00 3.24
263 264 8.821894 CATGAAATAAAGGTAGTTGCTCTAGTC 58.178 37.037 0.00 0.00 0.00 2.59
264 265 8.322091 ACATGAAATAAAGGTAGTTGCTCTAGT 58.678 33.333 0.00 0.00 0.00 2.57
265 266 8.723942 ACATGAAATAAAGGTAGTTGCTCTAG 57.276 34.615 0.00 0.00 0.00 2.43
266 267 9.162764 GAACATGAAATAAAGGTAGTTGCTCTA 57.837 33.333 0.00 0.00 0.00 2.43
267 268 7.148407 CGAACATGAAATAAAGGTAGTTGCTCT 60.148 37.037 0.00 0.00 0.00 4.09
268 269 6.961554 CGAACATGAAATAAAGGTAGTTGCTC 59.038 38.462 0.00 0.00 0.00 4.26
269 270 6.430000 ACGAACATGAAATAAAGGTAGTTGCT 59.570 34.615 0.00 0.00 0.00 3.91
270 271 6.608610 ACGAACATGAAATAAAGGTAGTTGC 58.391 36.000 0.00 0.00 0.00 4.17
273 274 9.498176 AGTAAACGAACATGAAATAAAGGTAGT 57.502 29.630 0.00 0.00 0.00 2.73
274 275 9.968743 GAGTAAACGAACATGAAATAAAGGTAG 57.031 33.333 0.00 0.00 0.00 3.18
275 276 9.491675 TGAGTAAACGAACATGAAATAAAGGTA 57.508 29.630 0.00 0.00 0.00 3.08
276 277 8.385898 TGAGTAAACGAACATGAAATAAAGGT 57.614 30.769 0.00 0.00 0.00 3.50
277 278 9.277565 CATGAGTAAACGAACATGAAATAAAGG 57.722 33.333 0.00 0.00 41.45 3.11
280 281 9.214957 ACTCATGAGTAAACGAACATGAAATAA 57.785 29.630 26.87 0.00 45.01 1.40
281 282 8.771920 ACTCATGAGTAAACGAACATGAAATA 57.228 30.769 26.87 0.00 45.01 1.40
282 283 7.672983 ACTCATGAGTAAACGAACATGAAAT 57.327 32.000 26.87 0.00 45.01 2.17
283 284 8.771920 ATACTCATGAGTAAACGAACATGAAA 57.228 30.769 33.30 12.75 45.87 2.69
284 285 9.516314 CTATACTCATGAGTAAACGAACATGAA 57.484 33.333 33.30 13.16 45.87 2.57
285 286 8.135529 CCTATACTCATGAGTAAACGAACATGA 58.864 37.037 33.30 13.35 45.87 3.07
286 287 8.135529 TCCTATACTCATGAGTAAACGAACATG 58.864 37.037 33.30 16.71 45.87 3.21
287 288 8.136165 GTCCTATACTCATGAGTAAACGAACAT 58.864 37.037 33.30 20.34 45.87 2.71
288 289 7.415989 GGTCCTATACTCATGAGTAAACGAACA 60.416 40.741 33.30 15.22 45.87 3.18
289 290 6.916932 GGTCCTATACTCATGAGTAAACGAAC 59.083 42.308 33.30 25.71 45.87 3.95
290 291 6.832384 AGGTCCTATACTCATGAGTAAACGAA 59.168 38.462 33.30 16.61 45.87 3.85
291 292 6.363065 AGGTCCTATACTCATGAGTAAACGA 58.637 40.000 33.30 24.79 45.87 3.85
292 293 6.294065 GGAGGTCCTATACTCATGAGTAAACG 60.294 46.154 33.30 23.78 45.87 3.60
293 294 6.550108 TGGAGGTCCTATACTCATGAGTAAAC 59.450 42.308 33.30 26.17 40.89 2.01
294 295 6.679542 TGGAGGTCCTATACTCATGAGTAAA 58.320 40.000 33.30 18.71 40.89 2.01
295 296 6.275692 TGGAGGTCCTATACTCATGAGTAA 57.724 41.667 33.30 22.24 40.89 2.24
296 297 5.924769 TGGAGGTCCTATACTCATGAGTA 57.075 43.478 32.17 32.17 41.34 2.59
297 298 4.816048 TGGAGGTCCTATACTCATGAGT 57.184 45.455 30.11 30.11 40.06 3.41
298 299 6.127869 CGTATTGGAGGTCCTATACTCATGAG 60.128 46.154 21.37 21.37 45.91 2.90
299 300 5.710567 CGTATTGGAGGTCCTATACTCATGA 59.289 44.000 21.04 0.00 45.91 3.07
300 301 5.105716 CCGTATTGGAGGTCCTATACTCATG 60.106 48.000 21.04 10.53 45.91 3.07
301 302 5.017490 CCGTATTGGAGGTCCTATACTCAT 58.983 45.833 21.04 0.00 45.91 2.90
302 303 4.105217 TCCGTATTGGAGGTCCTATACTCA 59.895 45.833 21.04 9.94 45.91 3.41
303 304 4.660168 TCCGTATTGGAGGTCCTATACTC 58.340 47.826 21.04 4.42 45.91 2.59
304 305 4.736611 TCCGTATTGGAGGTCCTATACT 57.263 45.455 21.04 0.00 45.91 2.12
316 317 2.305927 AGATTATGGGCCTCCGTATTGG 59.694 50.000 4.53 0.00 34.71 3.16
317 318 3.600388 GAGATTATGGGCCTCCGTATTG 58.400 50.000 4.53 0.00 34.71 1.90
318 319 2.233922 CGAGATTATGGGCCTCCGTATT 59.766 50.000 4.53 0.00 34.71 1.89
319 320 1.825474 CGAGATTATGGGCCTCCGTAT 59.175 52.381 4.53 0.00 34.71 3.06
320 321 1.254026 CGAGATTATGGGCCTCCGTA 58.746 55.000 4.53 0.00 35.24 4.02
321 322 2.050269 CGAGATTATGGGCCTCCGT 58.950 57.895 4.53 0.00 35.24 4.69
322 323 1.374758 GCGAGATTATGGGCCTCCG 60.375 63.158 4.53 1.29 35.24 4.63
323 324 0.108585 TTGCGAGATTATGGGCCTCC 59.891 55.000 4.53 0.00 0.00 4.30
324 325 1.876156 CTTTGCGAGATTATGGGCCTC 59.124 52.381 4.53 0.00 0.00 4.70
325 326 1.972872 CTTTGCGAGATTATGGGCCT 58.027 50.000 4.53 0.00 0.00 5.19
326 327 0.312102 GCTTTGCGAGATTATGGGCC 59.688 55.000 0.00 0.00 0.00 5.80
327 328 1.024271 TGCTTTGCGAGATTATGGGC 58.976 50.000 0.00 0.00 0.00 5.36
328 329 2.606308 GCATGCTTTGCGAGATTATGGG 60.606 50.000 11.37 0.00 42.54 4.00
329 330 2.658285 GCATGCTTTGCGAGATTATGG 58.342 47.619 11.37 0.00 42.54 2.74
340 341 4.096382 ACCCTAAAGATAACGCATGCTTTG 59.904 41.667 18.85 4.58 33.16 2.77
341 342 4.270008 ACCCTAAAGATAACGCATGCTTT 58.730 39.130 17.13 15.65 35.09 3.51
342 343 3.886123 ACCCTAAAGATAACGCATGCTT 58.114 40.909 17.13 11.44 0.00 3.91
343 344 3.560636 ACCCTAAAGATAACGCATGCT 57.439 42.857 17.13 0.00 0.00 3.79
344 345 4.351192 CAAACCCTAAAGATAACGCATGC 58.649 43.478 7.91 7.91 0.00 4.06
345 346 4.733523 GCCAAACCCTAAAGATAACGCATG 60.734 45.833 0.00 0.00 0.00 4.06
346 347 3.380320 GCCAAACCCTAAAGATAACGCAT 59.620 43.478 0.00 0.00 0.00 4.73
347 348 2.750712 GCCAAACCCTAAAGATAACGCA 59.249 45.455 0.00 0.00 0.00 5.24
348 349 2.098607 GGCCAAACCCTAAAGATAACGC 59.901 50.000 0.00 0.00 0.00 4.84
349 350 2.353579 CGGCCAAACCCTAAAGATAACG 59.646 50.000 2.24 0.00 33.26 3.18
350 351 3.376234 GTCGGCCAAACCCTAAAGATAAC 59.624 47.826 2.24 0.00 33.26 1.89
351 352 3.009253 TGTCGGCCAAACCCTAAAGATAA 59.991 43.478 2.24 0.00 33.26 1.75
352 353 2.572556 TGTCGGCCAAACCCTAAAGATA 59.427 45.455 2.24 0.00 33.26 1.98
353 354 1.353022 TGTCGGCCAAACCCTAAAGAT 59.647 47.619 2.24 0.00 33.26 2.40
354 355 0.766131 TGTCGGCCAAACCCTAAAGA 59.234 50.000 2.24 0.00 33.26 2.52
355 356 0.879090 GTGTCGGCCAAACCCTAAAG 59.121 55.000 2.24 0.00 33.26 1.85
356 357 0.183014 TGTGTCGGCCAAACCCTAAA 59.817 50.000 2.24 0.00 33.26 1.85
357 358 0.535553 GTGTGTCGGCCAAACCCTAA 60.536 55.000 2.24 0.00 33.26 2.69
358 359 1.071814 GTGTGTCGGCCAAACCCTA 59.928 57.895 2.24 0.00 33.26 3.53
359 360 2.203294 GTGTGTCGGCCAAACCCT 60.203 61.111 2.24 0.00 33.26 4.34
360 361 1.826487 AAGTGTGTCGGCCAAACCC 60.826 57.895 2.24 0.00 30.90 4.11
361 362 1.358759 CAAGTGTGTCGGCCAAACC 59.641 57.895 2.24 0.00 30.90 3.27
362 363 1.358759 CCAAGTGTGTCGGCCAAAC 59.641 57.895 2.24 0.00 0.00 2.93
363 364 2.485795 GCCAAGTGTGTCGGCCAAA 61.486 57.895 2.24 0.00 40.07 3.28
364 365 2.904866 GCCAAGTGTGTCGGCCAA 60.905 61.111 2.24 0.00 40.07 4.52
367 368 1.741770 CCTAGCCAAGTGTGTCGGC 60.742 63.158 0.00 0.00 46.62 5.54
368 369 0.389948 GTCCTAGCCAAGTGTGTCGG 60.390 60.000 0.00 0.00 0.00 4.79
369 370 0.317160 TGTCCTAGCCAAGTGTGTCG 59.683 55.000 0.00 0.00 0.00 4.35
370 371 2.143925 GTTGTCCTAGCCAAGTGTGTC 58.856 52.381 0.00 0.00 0.00 3.67
371 372 1.202770 GGTTGTCCTAGCCAAGTGTGT 60.203 52.381 0.00 0.00 0.00 3.72
372 373 1.523758 GGTTGTCCTAGCCAAGTGTG 58.476 55.000 0.00 0.00 0.00 3.82
373 374 0.400594 GGGTTGTCCTAGCCAAGTGT 59.599 55.000 0.00 0.00 35.73 3.55
374 375 0.673644 CGGGTTGTCCTAGCCAAGTG 60.674 60.000 0.00 0.00 35.39 3.16
375 376 1.677552 CGGGTTGTCCTAGCCAAGT 59.322 57.895 0.00 0.00 35.39 3.16
376 377 1.078426 CCGGGTTGTCCTAGCCAAG 60.078 63.158 0.00 0.00 35.39 3.61
377 378 3.074281 CCGGGTTGTCCTAGCCAA 58.926 61.111 0.00 0.00 35.39 4.52
378 379 3.712907 GCCGGGTTGTCCTAGCCA 61.713 66.667 2.18 0.00 35.39 4.75
379 380 4.832608 CGCCGGGTTGTCCTAGCC 62.833 72.222 2.18 0.00 0.00 3.93
380 381 2.973180 GATCGCCGGGTTGTCCTAGC 62.973 65.000 2.18 0.00 0.00 3.42
381 382 1.067582 GATCGCCGGGTTGTCCTAG 59.932 63.158 2.18 0.00 0.00 3.02
382 383 0.974010 AAGATCGCCGGGTTGTCCTA 60.974 55.000 2.18 0.00 0.00 2.94
383 384 2.240162 GAAGATCGCCGGGTTGTCCT 62.240 60.000 2.18 0.00 0.00 3.85
384 385 1.814169 GAAGATCGCCGGGTTGTCC 60.814 63.158 2.18 0.00 0.00 4.02
385 386 0.391263 AAGAAGATCGCCGGGTTGTC 60.391 55.000 2.18 0.00 0.00 3.18
386 387 0.036306 AAAGAAGATCGCCGGGTTGT 59.964 50.000 2.18 0.00 0.00 3.32
387 388 1.165270 AAAAGAAGATCGCCGGGTTG 58.835 50.000 2.18 0.00 0.00 3.77
388 389 1.539827 CAAAAAGAAGATCGCCGGGTT 59.460 47.619 2.18 0.00 0.00 4.11
389 390 1.165270 CAAAAAGAAGATCGCCGGGT 58.835 50.000 2.18 0.00 0.00 5.28
390 391 1.165270 ACAAAAAGAAGATCGCCGGG 58.835 50.000 2.18 0.00 0.00 5.73
391 392 2.095372 GGTACAAAAAGAAGATCGCCGG 59.905 50.000 0.00 0.00 0.00 6.13
392 393 3.000727 AGGTACAAAAAGAAGATCGCCG 58.999 45.455 0.00 0.00 0.00 6.46
393 394 5.815740 TCATAGGTACAAAAAGAAGATCGCC 59.184 40.000 0.00 0.00 0.00 5.54
394 395 6.903883 TCATAGGTACAAAAAGAAGATCGC 57.096 37.500 0.00 0.00 0.00 4.58
395 396 8.251750 TGTTCATAGGTACAAAAAGAAGATCG 57.748 34.615 0.00 0.00 0.00 3.69
423 424 9.453572 TCTCACAAAGCTTTATTACTGAATCAT 57.546 29.630 12.25 0.00 0.00 2.45
424 425 8.846943 TCTCACAAAGCTTTATTACTGAATCA 57.153 30.769 12.25 0.00 0.00 2.57
427 428 9.507329 AGAATCTCACAAAGCTTTATTACTGAA 57.493 29.630 12.25 0.00 0.00 3.02
428 429 9.155975 GAGAATCTCACAAAGCTTTATTACTGA 57.844 33.333 12.25 6.35 0.00 3.41
429 430 8.939929 TGAGAATCTCACAAAGCTTTATTACTG 58.060 33.333 12.25 1.26 35.39 2.74
430 431 9.507329 TTGAGAATCTCACAAAGCTTTATTACT 57.493 29.630 13.17 7.20 40.46 2.24
548 549 3.417779 GGTTAGGTGGAGGGGGCC 61.418 72.222 0.00 0.00 0.00 5.80
610 616 3.789840 GTTTAATAAAGGAGGGAGGGGGA 59.210 47.826 0.00 0.00 0.00 4.81
612 618 3.816994 CGTTTAATAAAGGAGGGAGGGG 58.183 50.000 0.00 0.00 0.00 4.79
618 624 3.181514 CCGTGTGCGTTTAATAAAGGAGG 60.182 47.826 9.33 1.40 36.15 4.30
730 748 5.276584 CGATTGCTTACGATCCAAGAAAGAG 60.277 44.000 6.01 0.00 33.63 2.85
731 749 4.566759 CGATTGCTTACGATCCAAGAAAGA 59.433 41.667 6.01 0.00 33.63 2.52
732 750 4.783450 GCGATTGCTTACGATCCAAGAAAG 60.783 45.833 0.00 0.00 38.39 2.62
733 751 3.063452 GCGATTGCTTACGATCCAAGAAA 59.937 43.478 0.00 2.50 38.39 2.52
773 795 0.326618 ATGTCCTCCCCTCCACGATT 60.327 55.000 0.00 0.00 0.00 3.34
821 843 1.520666 CCACCATGTACCCTCGTCC 59.479 63.158 0.00 0.00 0.00 4.79
896 918 4.035102 GCGGGAGAAAGGGCTGGT 62.035 66.667 0.00 0.00 0.00 4.00
898 920 2.124942 GAGCGGGAGAAAGGGCTG 60.125 66.667 0.00 0.00 35.54 4.85
945 967 4.596585 CCACCACCACCACCACCC 62.597 72.222 0.00 0.00 0.00 4.61
989 1011 3.267860 GCTTCATGGCGAGCTCCG 61.268 66.667 8.47 4.62 42.21 4.63
1057 1079 1.369625 AAGAGGGCTCGCAATTTACG 58.630 50.000 0.00 0.00 34.09 3.18
1067 1089 5.767665 AGAAAGAAAGAAAGAAAGAGGGCTC 59.232 40.000 0.00 0.00 0.00 4.70
1075 1097 9.860898 CCAGAAAGAAAGAAAGAAAGAAAGAAA 57.139 29.630 0.00 0.00 0.00 2.52
1076 1098 9.025041 ACCAGAAAGAAAGAAAGAAAGAAAGAA 57.975 29.630 0.00 0.00 0.00 2.52
1077 1099 8.462016 CACCAGAAAGAAAGAAAGAAAGAAAGA 58.538 33.333 0.00 0.00 0.00 2.52
1564 1586 1.134367 CGCAGGTAGTACTAAGCAGCA 59.866 52.381 17.96 0.00 0.00 4.41
1576 1598 0.816825 ATCAGCCATTGCGCAGGTAG 60.817 55.000 11.31 6.68 44.33 3.18
1580 1604 2.278596 GCATCAGCCATTGCGCAG 60.279 61.111 11.31 0.00 44.33 5.18
1601 1625 3.120385 CATGAGACGCGCCAGCAA 61.120 61.111 5.73 0.00 45.49 3.91
1606 1630 0.527600 TGTATCACATGAGACGCGCC 60.528 55.000 5.73 0.00 38.99 6.53
1758 1782 0.593008 CGTCCGTGTCGTTCAGAACA 60.593 55.000 13.82 0.00 0.00 3.18
1761 1785 2.050714 GCGTCCGTGTCGTTCAGA 60.051 61.111 0.00 0.00 0.00 3.27
1788 1812 1.374758 CGCCTCCTCTGTTGGTGTC 60.375 63.158 0.00 0.00 0.00 3.67
1791 1815 4.021925 GGCGCCTCCTCTGTTGGT 62.022 66.667 22.15 0.00 0.00 3.67
1815 1839 3.005539 AGCAGCGTCCCCATGTCT 61.006 61.111 0.00 0.00 0.00 3.41
2025 2049 1.663695 CACCGAGTCTCTCTCTCTCC 58.336 60.000 0.00 0.00 40.75 3.71
2207 2244 1.457346 AGGAAATGGCAGAAAGAGCG 58.543 50.000 0.00 0.00 0.00 5.03
2216 2253 2.256306 GGGAGGAAAAAGGAAATGGCA 58.744 47.619 0.00 0.00 0.00 4.92
2219 2256 5.466819 GTTTACGGGAGGAAAAAGGAAATG 58.533 41.667 0.00 0.00 45.82 2.32
2237 2274 2.708051 AGCTAAAAGGCGAGGGTTTAC 58.292 47.619 0.00 0.00 37.29 2.01
2246 2283 8.515473 ACATTTAAGTTTTTAGCTAAAAGGCG 57.485 30.769 26.08 14.72 36.44 5.52
2273 2312 4.130118 ACACTTCAGTCCAGCTTAACTTG 58.870 43.478 0.00 0.00 0.00 3.16
2289 2328 2.223745 TCGTGGGCCTTTTTACACTTC 58.776 47.619 4.53 0.00 0.00 3.01
2302 2341 0.105039 CTTGTCCCTATCTCGTGGGC 59.895 60.000 0.00 0.00 43.04 5.36
2303 2342 0.753262 CCTTGTCCCTATCTCGTGGG 59.247 60.000 0.00 0.00 44.66 4.61
2309 2350 2.853077 CCTTTTCCCCTTGTCCCTATCT 59.147 50.000 0.00 0.00 0.00 1.98
2473 2514 1.638467 CCATCACGCGCTAAAGCTC 59.362 57.895 5.73 0.00 39.32 4.09
2493 2534 3.542742 GTTACGACTCTGCGCGCC 61.543 66.667 30.77 11.85 33.86 6.53
2679 2744 2.451132 CTGCCACTACGTACGAGAATG 58.549 52.381 24.41 13.57 0.00 2.67
2706 2774 4.351938 TCAGGTTCGACGGCGGTG 62.352 66.667 12.58 3.57 38.28 4.94
2707 2775 4.353437 GTCAGGTTCGACGGCGGT 62.353 66.667 12.58 0.00 38.28 5.68
2742 2810 9.748708 CATGATTTCCTTGTTTCTTTTCTTGTA 57.251 29.630 0.00 0.00 0.00 2.41
2743 2811 8.260114 ACATGATTTCCTTGTTTCTTTTCTTGT 58.740 29.630 0.00 0.00 29.93 3.16
2744 2812 8.545420 CACATGATTTCCTTGTTTCTTTTCTTG 58.455 33.333 0.00 0.00 31.61 3.02
2745 2813 7.712205 CCACATGATTTCCTTGTTTCTTTTCTT 59.288 33.333 0.00 0.00 31.61 2.52
2746 2814 7.069826 TCCACATGATTTCCTTGTTTCTTTTCT 59.930 33.333 0.00 0.00 31.61 2.52
2748 2816 7.069826 TCTCCACATGATTTCCTTGTTTCTTTT 59.930 33.333 0.00 0.00 31.61 2.27
2759 2833 3.397482 CTCCGATCTCCACATGATTTCC 58.603 50.000 0.00 0.00 0.00 3.13
2881 2958 3.118992 TCACGGTCATCAGATCTTCCAAG 60.119 47.826 0.00 0.00 0.00 3.61
2894 2971 0.255604 TTGCCCATCATCACGGTCAT 59.744 50.000 0.00 0.00 0.00 3.06
2960 3049 2.655685 GCGGCTCCGACGATCTTC 60.656 66.667 13.11 0.00 42.83 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.