>input_sequence_63032
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-------------------------------------------------------------ATGAAGCGGCCCGGCGGCG
GAAACCCCTCCTCCCTCCACCAGATGGCCAGCCCCAATCGTAAATTGCGAGCCCTCTTTCTTTCTTTCTTTCTTTCTTTC
TGGTGGGAATTCGTTCTGTTGAGGTGAAGGGCGCGGAAATCTGAGTCTCTGTGTGCGTGTTTGATTAGATATGGACTACG
GCGTGGTCGGGATGGAGGCGGACGGGGACGCGGAGGAGGAGATGATGGCGTGCGGCGGTGGCGGCGGCGGCTGCGGGGGA
GGGGAGAAGAAGCGGCGGCTGAGCGCGGAGCAGGTGCGCGCCCTGGAGCGGAGCTTCGAGGTGGAGAACAAGCTGGAGCC
GGAGCGCAAGGCGCGGCTGGCGCGCGACCTCGGCCTGCAGCCGCGCCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCGC
GCTGGAAGACCAAGCAGCTCGAGCGCGACTACAACGCGCTGCGCCACTCCTACGACGCGCTCCGCGTCGACCACGACGCC
CTCCGCCGCGACAAGGAGGCCCTCCTCGCCGAGGTCCGTGCCGCTCACGCCCGCTTAAATTACGCTGCTGCTTAGTAC--
TACCTGCGCAATGGCTGATGCTCGTTGCTGGCGCGTCTCATGTGATACAGATCAAGGATCTGAAGGGGAAGCTGGGGGAC
GAGGAGGCCGCGGCGAGCTTCACGTCGGTGAAGGAGGAGCCGGCGGCGTCCGACGGCCCGCCGCCCGCGGGCATGGGGTC
ATCCGACAGCGACTCGAGCGGTGTTCTGAACGACACGGACGCGACCGGCGCGACACCAACAGAGGAGGCGCCGGCTCCAG
ACATGGGGACGCTGCTCGGCGGGCCCGGGGCGGCCGGCGCGGCGGCGGCGGGGCACGGGCAGGTGTTCCTGCACGGGAAT
TTCCTGAAGGTGGAGGAGGACGAGACGGGGTTCCTGGACGACGAGGAGCCGTGCGGGGGGTTCTTCGCCGACGAGCCGCC
GCTGGCGTGGTGGACGGAGCCGACGGATCCCTGGAAGTGA----------------------------------------
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>chr5A_1_TraesCS5A01G249000
GCCGTGTCACGCCCAGGTACGTTTGGCGCAGTTGGTGTGGTTTGCAGGGATGAGAGATGTTTGTTCATGGGAGCGTCAGC
TCTCGTTTTTAAAGGACTGCACAACCCCCAAGTGCTAGAAGCACTAGCTGTTCGGGAGGCATTAGCACTTTCAGAAGATC
TCTATATCAACCGTTTACTTGTTGCCTCCGATTGCGAGGTGGTGGTAGATGCAATCAGACAGGGAAGCTCAGCAGAATTT
GGAGCCATTGTCGAGGAAATCAAGACTAGAGCAACTACCTTTATTTCATGTTCGTTTACTCATGAGTATAGGACCTCCAA
TACGGAGGCCCATAATCTCGCAAAGCATGCGTTATCTTTAGGGTTTGGCCGACACACTTGGCTAGGACAACCCGGCGATC
TTCTTTTTGTACCTATGAACATTATGATTCAGTAATAAAGCTTTGTGAGATTCTCAAAAAAAAAAGCAAAAAAGGTCGCG
CTAGGGCTCGCAAATTGCCGTGCGACGCGTGCTGGGGGTCCTAACCATGGTCAGCTCCTGACCGCACCGGCCCCCTCCAC
CTAACCCGTGCGCCGAGCCGGAGGAACTCG-----GCCCCGCCTGTCTCTCTCTCTCCCCCTCCCTCCTTTATTAAACGC
ACACGGAAATGCAGCACGCAGTGTTGGGGAAACGGAAAGGAAACCCGGAAAAGAAAACAGAGCAGGACTCCACTCTCCTC
-----------CCCCC-TCCTCACTCTCTCTTTCTTGGATCGTAAGCAATCGCGGAGG----AAATCCATCCGCAATCGT
GGAGGGGAGGACATTTTGATCGGTGCTGGTTTGCCAAGGCGGGGACGAGGGTACATGGTGGCCGTCATGGATCGAGGCGT
GGACGGGAGGACGGGGAGGGGCCAGCAGTGGAGGCGCACCAGCCCTTTCTCCCGCTCTTTGCTCCTCTTCTCGCAGTAAT
CGGGGAGGGTGGTGGTGGTGGTGGTGGTGCCGGTGCCATCTGAATTTCTGCGGAGCTCGCCATGAAGCGGCCCGGCGGCG
GAAACCCCTCCTCCCTCCACCAGATGGCCAGCCCCAATCGTAAATTGCGAGCCCTCTTTCTTTCTTTCTTTCTTTCTTTC
TGGTGGGAATTCGTTCTGTTGAGGTGAAGGGCGCGGAAATCTGAGTCTCTGTGTGCGTGTTTGATTAGATATGGACTACG
GCGTGGTCGGGATGGAGGCGGACGGGGACGCGGAGGAGGAGATGATGGCGTGCGGCGGTGGCGGCGGCGGCTGCGGGGGA
GGGGAGAAGAAGCGGCGGCTGAGCGCGGAGCAGGTGCGCGCCCTGGAGCGGAGCTTCGAGGTGGAGAACAAGCTGGAGCC
GGAGCGCAAGGCGCGGCTGGCGCGCGACCTCGGCCTGCAGCCGCGCCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCGC
GCTGGAAGACCAAGCAGCTCGAGCGCGACTACAACGCGCTGCGCCACTCCTACGACGCGCTCCGCGTCGACCACGACGCC
CTCCGCCGCGACAAGGAGGCCCTCCTCGCCGAGGTCCGTGCCGCTCACGCCCGCTTAAATTACGCTGCTGCTTAGTAC--
TACCTGCGCAATGGCTGATGCTCGTTGCTGGCGCGTCTCATGTGATACAGATCAAGGATCTGAAGGGGAAGCTGGGGGAC
GAGGAGGCCGCGGCGAGCTTCACGTCGGTGAAGGAGGAGCCGGCGGCGTCCGACGGCCCGCCGCCCGCGGGCATGGGGTC
ATCCGACAGCGACTCGAGCGGTGTTCTGAACGACACGGACGCGACCGGCGCGACACCAACAGAGGAGGCGCCGGCTCCAG
ACATGGGGACGCTGCTCGGCGGGCCCGGGGCGGCCGGCGCGGCGGCGGCGGGGCACGGGCAGGTGTTCCTGCACGGGAAT
TTCCTGAAGGTGGAGGAGGACGAGACGGGGTTCCTGGACGACGAGGAGCCGTGCGGGGGGTTCTTCGCCGACGAGCCGCC
GCTGGCGTGGTGGACGGAGCCGACGGATCCCTGGAAGTGAGGCGCGGCGGAGAGAGAGAGACTCGGTGGGAGAC----GA
CACCTCGCGCGGGGAATAAAAGATTAGTGAAGAAAGCAGGGGCTTTTCTGAAATTTTTGTAAATCTCGTTTTTATCTAGT
CCTTTCCTGTCAAACCCTCGCCGTCGC---------AGCATCAGCAATAGTACTACTACTACTACTAGTGCCATTTCCGC
CCCCGCTCTTTCTGCCATTTCCTTTTTCCTCCCGTAAACCCTC--GCCTTTTAGCTAAAAACTTAAATGTTCAAGTTAAG
CTGGACTGAAGTGTAAAAAGGCCCA--CGAGATAGGGACAAGGGGAAAAGGACAGTGTGGAGCGAGCAGTGAAGAGGAAG
GGAGGGAGCAGCAAGCAACAACGGGCGGGCCACGGAGCAGCGTCGCTGTTGGGGTGGGCCCCGGAGGCCACGTGAAGCGC
AGGCATTGGGCCTCCCATTGACCGGGCTGGCCTGAGCTTTAGCGCGTGATGGCGGCGCGCAGAGTCGTAACCGACAGCCA
TCCGCCCCGCGACGCCAACGCGCCTGGCCCAGCCCGCGCCCCCTTCGTCCACGCCGGGCCTCCCCCGCGAGAGCGACCGC
CGACGGCGACCCGCGCG------------------------CGCGCTCCCCCGTCGTCGCCGGCTCCCTCGAATCGAGCC
CCGCGGCCTCGCGCTTTCCTTGCCATTCTCGTACGTAGTGGC---AGGTGTTGCACCGCCGTCGAACCTGACGCGGCGTC
GTGCTCCGGTACAAGA------AAAGAAACAAGGAAATCATGTGGAGATCGGAGCGCGGCTCTCATGATGCGGAGCCTTT
TGGAGGCTATAGAATAGCCCCCTTGCGCCTGGAGATTCTGTGG---GCGGGTGCGTCGCCGTGCCAATCGAGTGCGTCTT
GGAAGATCTGATGACCGTGATGATGGGCAATCAGG---------TA---CTCGATCCAGGAGTGGTAGACCGTGGTGGGG
GAAGGAGGGAAGATCGTCGGAGCCGCGGCCGCCGCGCCCGTGCGGAATATTCTGTCGGAATGATT
>chr5D_465
AGT-----------------------------------------------------------------------------
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-------------------------------------------------------------------AAAAAAGATCGCG
CTTGGGCTCGCAAATTGCCGTGCGACGCGTGCAGGGGGTCCTAACCATGGTCAGCTCCTGACCGCACC-GCCCCCTCCAC
CTAACCCGAGCGCCGAGCCGGAGGAACACGGCCCCGCCCCGCCTGTCTCTCTCTCCCTCCCTCTCCCCTTTATTAAACGC
ACACGGAAATGCAGCACGCAGTGTTGGGGAAACGGAAAGGAAACCCGGAAAAGAAAACAGAGCAGGACTCCACTCCACAC
TCCACTCTCCTCCCCC-TCCTCACTCT----TT-TTGGATCGTAAGGAAA--CGCGGAAGAAAAATCCATACGCGATCGT
GGAGGGGAGGACATTTTGATCGGTGTTGGTTTCCCAAGGCGGAGACGAGGGTACATGGTGGCCGTCATGGATCGAGGCGT
GGACGGGAGGACGGGGAGGGGCCAGCAGTGGAGGCGCGCGAGCCCTTTCTCCCGCTCTTTGCTCCTCTTCTCGCAGTAAT
CGGGGAAGGTGGTGGTGGTGGTGGTGGTGCCGGTGCCATCTGAATTTCTGTGGAACTCGCCATGAAGCGGCCCGGCGGCG
GAAACCCCTCCTCCCACCTCCAGATGGCCAGCCCCAATGGTAAATTGCCAGCCCT----CTTTCTTTCTTTCTTTCTTTC
TGATGGGAATTCGTTCTGTGGAGGTGAAGGGCGCGGAAATCTGAGTCTTTGTGTGCGTGTTTGATTAGATATGGACTACG
GCGTGGTCGGGATGGAGGCGGACGGGGACGCGGAGGAGGAGATGATGGCGTGCGGCGGCGGCGGCGGCGGCTGCGGGGGA
GGGGAGAAGAAGCGGCGGCTGAGCGCGGAGCAGGTGCGCGCCCTGGAGCGGAGCTTCGAGGTGGAGAACAAGCTGGAGCC
GGAGCGCAAGGCGCGGCTGGCGCGCGACCTTGGCCTGCAGCCGCGCCAGGTCGCCGTCTGGTTCCAGAACCGCCGGGCGC
GCTGGAAGACCAAGCAGCTCGAGCGCGACTACAACGCGCTGCGCCACTCGTACGACGCGCTCCGCGTCGACCACGACGCC
CTCCGCCGCGACAAGGAGGCCCTCCTCGCCGAGGTCCGTGCCGCTCACGCCCGCTT--------------CTTAGTATTG
TACGTGCGCAATGGCTGATGCTCGATGCTTGCGCGCCTCGTGTGATACAGATCAAGGATCTGAAGGGAAAGCTGGGGGAC
GAGGAGGCCGCGGCCAGCTTCACGTCGGTGAAGGAGGAGCCGGCGGCGTCCGACGGCCCGCCGCCCGCGGGCATGGGGTC
ATCCGACAGCGACTCGAGCGGGGTGCTGAACGACACGGACGCGACCGGCGCCACGCCAACAGAGGAGGCGCCGGCTCCGG
AGATGGGGACGCTGCTCGGCGGGCCCGGGGCGGCCGGCGCGGCGGCGGCGGGGCACGGGCAGGTGTTCCTGCACGGGAAT
TTCCTGAAGGTGGAGGAGGACGAGACGGGGTTCCTGGACGACGAGGAGCCGTGCGGGGGGTTCTTCGCCGACGAGCCGCC
GCTGGCGTGGTGGACGGAGCCGACGGATCCCTGGAAATGAGGCGCGGCAGAGAGCGAGAGACTCGGTGGGAGACGACGGA
CACCTCGCGCTGGGAATAAAAGATTAGTGAAGAAAGCAGGGGCTTTTCTGAAATTTTTGTAAATCTCGTTTTTATCTAGT
CCTTTCCTGTCAAACCCTCGCCGTCGCTAGGCAGCCAGCATCAGCAATAGTACTACTACTACTACTAGTGCCATTTCCGC
CCCTGCTCTTTCAGCTATTTCCTTTTTCCTCCCATAAACCCTT--GCCTTTTAGCTAAAAACTTAAATGTTTAAGTTAAG
CTGGACTCAAGTGTAAAAAGCTACA--CGGGATAGGGACAAGGGGAAAAGGACAGTGTGGAGCGAGCAGTGAAGAGGAAG
GGAGGGAGCAGCAAGCAACGACGGGCGGGCCACGGAACAGCGTCGCTGTTGGG-TGGGCCCCGGAGGCCACGTGAAGCGC
AGGCATTGGGCCTCCCATTGACCGGGCTGGCCTAAGCTTTAGCGCTTGATGGCAGCGCGCAGAGTCGTAACCGACAGCCA
TCCGCCCCGCGACGCCAACGTGCCTGGCCCAGTCCGCGCCCCCTTCGTCCACGGCGGGCCTCCCCCGCGAGAGCGACCGC
CGACGGCGACCCGCGCGTACGTGCGTGGTGGCGCACGCGCTCGCTCTCCCCCGTCGTCGCCGGTTCCCTCGGATCGAGC-
------CCTCGCGCTTTCCCTGCTATTCTCGTACGTAGTAGC---AGTTGTTGTGCCGCCGTCGAACCTGATGCACGCTC
CC----------CCGGTACAAGAAAGAAACAAAGAAATCATGTGGAGATCGGAGCGCGGCTCTCATGATGCCAAGCCTTT
TGGAGGCTATAGAATAGGCCCCTCGCGCCTGGAGATTCCGTGGGCAGCGGGCGCGTCGCCGTGCCAATCGAGTGCGTTTT
GGAAGATCTGGTGACCGTGATGATGGGCAATCAGGCGCGGCACGTACTACTCGATCCAGGAGTGGTAGCCCGTGGTGGGG
GAAGGAGGAAAGATCGCCGGAGCCGTGGCCGCCGTGCCCGTGCGGAATATTCTGTCGGAATGATT
>chr5B_469
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--------------------------------------------------------------------AAAAAGATCGCG
CTAGGGCTCGCAAATTGCCGTGCGACGCGTGCTGGGGGTCCTAACCATGGTCAGCTCCTGACCGCACCACCCCCCTCCAC
CTAACCCGAGCGCCGAGTCGGAGGAACTCG-----GCCCCGCCTGTCTCTCTCTCCC--CCTCTCTCCTTTATTAAACGC
ACACGGAAATGCAGCACGCAGTGTTGGGGAAACAGAAAGGAAACCCGGAAAAGAAAACAGAGCAGGACTCCACTCCACAC
TCCACTCTCCTCCCCCCTCCTCACTCT----TTCTTGGATCGTAAGGAAA--CGGAAG----AAATACATCCGCGATCGT
GGAGGGGA---CATTTTGATCGGTGTTGGTTTCCCAAGGCCGAGACGAGGGTACGTGGTGGTCGTCATGGATCGGGGCGT
GGACGGGAGGACGGGGAGGGACCAGCAGCGGAGGCGACCGAGCCCTTTCTCCCGCTCTTTGCTCCTCTTCTCGCAGTAAT
CGGGGAAG------GTGGTGGTGGTGGTGCCGGTGCCATCTGAATTTCTGTGGAGCTCGCCATGAAGCGGCCCGGCGGCG
GAAACCCCTCCTCCCTCCACCAGATGGCCAGCCCCAATGGTAAATTGCAAGCCCT----CTTTC---------TTTTTTC
TGGTGGCAATTCGTTCTGTTGAGGTGAAGGACGCGGAAATCTTAGTCTCTGTGTACGTGTTTGATTAGATATGGACTACG
GCGTGGTCGGGATGGAGGCGGATGGGGACGCGGAGGAGGAGATGATGGCGTGCGGCGGCGGCG---GCGGCTGCGGGGGA
GGGGAGAAGAAGCGGCGGCTGAGCGCGGAGCAGGTGCGCGCCCTGGAGCGGAGCTTCGAGGTGGAGAACAAGCTGGAGCC
GGAGCGCAAGGCGCGGCTGGCGCGCGACCTCGGCCTGCAGCCGCGCCAGGTCGCCGTCTGGTTCCAGAACCGCCGGGCGC
GCTGGAAGACCAAGCAGCTCGAGCGCGACTACAACGCGCTGCGCCACTCGTACGACGCGCTCCGCGTCGACCACGACGCC
CTCCGCCGCGACAAGGAAGCCCTCCTCGCCGAGGTCCGTGCCGCTCACACCCGCTTAAATTATGCCGCTGCTTAGTATTG
TACGTCCGCAATGGCTGATGCTCGATGCTTGCGCGTCTCGTGTGATACAGATCAAGGATCTGAAGGGGAAGCTGGGGGAC
GAAGAGGCCGCGGCCAGCTTCACGTCAGTGAAGGAGGAGCCGGCGGCGTCCGACGGCCCACCGCCCGCGGGCATGGGGTC
ATCCGACAGCGACTCCAGCGGGGTGCTGAACGACACGGACGCGACCGGCGCCACGCCAACAGAGGAGGCGCCAGCTCCGG
AGATGGGGACGCTGCTCGGCGGGCCCGGGGCGGCCGGCGCGGCGGCGGCGGGGCACGGGCAGATGTTCCTGCACGGGAAT
TTCCTGAAGGTGGAGGAGGACGAGACGGGGTTCCTGGACGACGAGGAGCCGTGCGGTGGCTTCTTCGCCGACGAGCCGCC
GCTGGCGTGGTGGACCGAGCCGACGGATCCCTGGAAATGAGGCGCGGCAGAGAGAG--AGACTCGGTGGGAGAC----GA
CACCTCGCGCGGGGAATAAAAGATTAGTGAAGAAAGCAGGGGCTTTTCTGAAATTTTTGTAAATCTCGTTTTTATCTAGT
CCTTTCCTGTCAAACCCTCGCCCTCGCTAGGCAGCCAGCATCAGCAATAGT------ACTACTACTAGTGCCATTTCCGC
CCCTGCTCTTTCAGCTATTTCCTTTTTCTTCCCATAAACCCTTTTGCTTGTTAGCTAAAAAAATCT--------GTTAAG
CTGGACTCAAGTGTAAAAGGCGCCACGCGGGATAGGGACAAGGGGAAAAGGACAGTGTGGAGCGAGCAGTGAAGAGTAAG
GGAGGGAGCAGCAAGCAACAACGGGCGGGCCACGGAACAGCGTCGCTGTTGGG-TGGGCCCCGGAGGCCACGTGAAGCGC
AGGCATTGGGCCTCCCATTGACCGGGCTAGCCTAAGCTTTAGCGCTTGATGGCACGCAGCAGAGTCGTAACCGACAGCCA
TCCGCCCCGCGACGCCAACGTGCCTGGCCCAGCTCGCGGCCCCTTCGTCCACGGCGGGCCTCCCCCGCGAGAGCAACCGC
CGACGGCGACCCGCGCGTGCGCGCG----------------CGCTCTCCCCCGTCGTCGCCGGCTCTCTCGAATCGAGCC
CTCTGGCCTCGCGCTTTCCTTGCTATTCTCGTACGTAGTACGAGTAGTTGTTGTGCCGCCGTCGAACCTGATGCAGAGTA
GTGCTCCGGCCTCCGGTACAAGAAAGAAACAAAGAAATCATGTGGAGATCGAAGCGCGGCTCTCATGATGCGGAGCCTTT
TGGAGGCTATAGAATAGCCCCCTTGCGCCTGGAGATTCTGTGG---GCGGGTGCGTCGCCCTGCCAATCGAGTGCGTTTT
GGAAGATCTGGTGACCGTGATGATGGGCAATCAGGCGCGGCACGTA---CTCGATCCAGTAGTGGTAGACCGTGGTGGGG
GAACGAGGAAAGATCGCCGGAGCCGTGGCCGCCGTGCCCGTGCGGAATATTCTGTCGGAATGATT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----
--------------------------------------------------------------------S-----------
--------S----------------------------------------------S-S-----S----------------
---------------------------------------------------------------------------SS-S-
---------------------------SSSS---------------S--SSS----------------------S-----
-------------------------S------S---------S-------------------------------------
-------------------------------------S-S----------------------------------------
------S-------------------------------------------S-----------------------------
--------------------------------------S---------S------SSSS---------------------
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----------------------------------------------------------S---------------------
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---------------------------------------------------------------------------S----
-------------------------------------------------S------------------------------
--------------------------------------------------------------S--S-----------S--
---S--------------------S----S---------S----------------------------------------
--------------S-----------------------------------------------------------------
---------------------S--S--------------------------S--S-----------------------S-
-S------------------------------------------------------------------------------
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------------------------------------S-----------S-------------------------------
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---S--------S--S-----------------S--------S----------------------------S--------
-------S------------SS-------S--------------------------------------------------
------------------------------------S----------------S--------------------------
---------------------------------S-----------S-------S--------------------------
--------------------S--------------------------------S--------------------------
--------------------------------------------S-----------------------------------
-SSS-------------------S---------------S-------S-----SS----------------S--S-S---
---------SSSSS-S----------------S-----------------------------------------------
-----------------------------------------------------------------------------S--
----------S---------------------------------------------------------------------
--------S-------S--------S--------S------------------------------
>forward_406
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------------------------------------------------------------------ACAACCCGGCGATC
TTCTTT--------------------------------------------------------------------------
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>reverse_2341
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--------------------GCCCACGAGATAGGGACAAG----------------------------------------
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