Multiple sequence alignment - TraesCS5A01G240800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G240800 chr5A 100.000 2949 0 0 1 2949 456973712 456976660 0.000000e+00 5446.0
1 TraesCS5A01G240800 chr5A 79.235 732 90 33 1088 1768 454817122 454816402 1.250000e-123 453.0
2 TraesCS5A01G240800 chr5A 79.155 734 87 37 1088 1780 457003746 457004454 5.800000e-122 448.0
3 TraesCS5A01G240800 chr5D 88.379 1721 67 49 1198 2873 354836976 354838608 0.000000e+00 1947.0
4 TraesCS5A01G240800 chr5D 79.819 664 85 28 1088 1712 354031475 354030822 3.490000e-119 438.0
5 TraesCS5A01G240800 chr5D 78.854 733 85 37 1088 1779 354891139 354891842 5.840000e-117 431.0
6 TraesCS5A01G240800 chr5D 82.555 407 39 15 769 1167 354836602 354836984 2.190000e-86 329.0
7 TraesCS5A01G240800 chr5D 84.746 354 23 11 430 766 354836188 354836527 2.830000e-85 326.0
8 TraesCS5A01G240800 chr5D 94.828 58 3 0 323 380 354836142 354836199 1.130000e-14 91.6
9 TraesCS5A01G240800 chr5D 85.542 83 9 2 1703 1785 354030815 354030736 1.880000e-12 84.2
10 TraesCS5A01G240800 chr5D 90.909 44 3 1 2904 2947 354838594 354838636 1.140000e-04 58.4
11 TraesCS5A01G240800 chr5B 86.714 1543 86 47 1350 2844 419620281 419621752 0.000000e+00 1604.0
12 TraesCS5A01G240800 chr5B 85.641 585 51 16 769 1344 419619635 419620195 4.240000e-163 584.0
13 TraesCS5A01G240800 chr5B 78.718 733 94 26 1088 1768 418374636 418373914 1.620000e-117 433.0
14 TraesCS5A01G240800 chr5B 78.030 660 93 33 1088 1712 419644328 419644970 4.640000e-98 368.0
15 TraesCS5A01G240800 chr5B 84.932 365 25 8 431 766 419619207 419619570 2.810000e-90 342.0
16 TraesCS5A01G240800 chr5B 85.795 176 19 2 1 176 419618997 419619166 6.490000e-42 182.0
17 TraesCS5A01G240800 chr7A 93.878 49 2 1 176 224 39061352 39061399 4.080000e-09 73.1
18 TraesCS5A01G240800 chr3B 92.308 52 3 1 173 224 330781534 330781584 4.080000e-09 73.1
19 TraesCS5A01G240800 chr1A 91.837 49 3 1 176 224 121360136 121360089 1.900000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G240800 chr5A 456973712 456976660 2948 False 5446.0 5446 100.0000 1 2949 1 chr5A.!!$F1 2948
1 TraesCS5A01G240800 chr5A 454816402 454817122 720 True 453.0 453 79.2350 1088 1768 1 chr5A.!!$R1 680
2 TraesCS5A01G240800 chr5A 457003746 457004454 708 False 448.0 448 79.1550 1088 1780 1 chr5A.!!$F2 692
3 TraesCS5A01G240800 chr5D 354836142 354838636 2494 False 550.4 1947 88.2834 323 2947 5 chr5D.!!$F2 2624
4 TraesCS5A01G240800 chr5D 354891139 354891842 703 False 431.0 431 78.8540 1088 1779 1 chr5D.!!$F1 691
5 TraesCS5A01G240800 chr5D 354030736 354031475 739 True 261.1 438 82.6805 1088 1785 2 chr5D.!!$R1 697
6 TraesCS5A01G240800 chr5B 419618997 419621752 2755 False 678.0 1604 85.7705 1 2844 4 chr5B.!!$F2 2843
7 TraesCS5A01G240800 chr5B 418373914 418374636 722 True 433.0 433 78.7180 1088 1768 1 chr5B.!!$R1 680
8 TraesCS5A01G240800 chr5B 419644328 419644970 642 False 368.0 368 78.0300 1088 1712 1 chr5B.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.038159 GTCAGGTGAGAACCAGACGG 60.038 60.0 4.90 0.00 36.74 4.79 F
1079 1189 0.031857 AGCTTGATCGATCCTCTGCG 59.968 55.0 22.31 5.78 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1645 0.107459 GCTTCCTCATCTCCCGCTTT 60.107 55.0 0.0 0.0 0.00 3.51 R
2536 2842 0.108945 GAATCCAGCAACCAAGCAGC 60.109 55.0 0.0 0.0 36.85 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.045407 TAACGGCAAGTCACTCACCT 58.955 50.000 0.00 0.00 0.00 4.00
65 66 1.249469 TATGTGCGTGTACCCGGTCA 61.249 55.000 0.00 0.00 0.00 4.02
75 76 1.001633 GTACCCGGTCACACTTGTCAT 59.998 52.381 0.00 0.00 0.00 3.06
77 78 0.321671 CCCGGTCACACTTGTCATCT 59.678 55.000 0.00 0.00 0.00 2.90
78 79 1.270839 CCCGGTCACACTTGTCATCTT 60.271 52.381 0.00 0.00 0.00 2.40
80 81 2.878406 CCGGTCACACTTGTCATCTTTT 59.122 45.455 0.00 0.00 0.00 2.27
81 82 3.315191 CCGGTCACACTTGTCATCTTTTT 59.685 43.478 0.00 0.00 0.00 1.94
129 130 5.639931 TGTATTTTGTTGCGTATACAGCTCA 59.360 36.000 16.71 13.47 31.73 4.26
149 150 1.633774 ACCTGTCTCTTCACACCGAT 58.366 50.000 0.00 0.00 0.00 4.18
151 152 1.134965 CCTGTCTCTTCACACCGATCC 60.135 57.143 0.00 0.00 0.00 3.36
155 156 3.007940 TGTCTCTTCACACCGATCCATTT 59.992 43.478 0.00 0.00 0.00 2.32
162 163 3.078097 CACACCGATCCATTTGTTACCA 58.922 45.455 0.00 0.00 0.00 3.25
165 166 3.078837 ACCGATCCATTTGTTACCACAC 58.921 45.455 0.00 0.00 30.32 3.82
169 170 4.668177 CGATCCATTTGTTACCACACGAAC 60.668 45.833 0.00 0.00 30.32 3.95
170 171 2.879646 TCCATTTGTTACCACACGAACC 59.120 45.455 0.00 0.00 30.32 3.62
171 172 2.882137 CCATTTGTTACCACACGAACCT 59.118 45.455 0.00 0.00 30.32 3.50
172 173 4.066490 CCATTTGTTACCACACGAACCTA 58.934 43.478 0.00 0.00 30.32 3.08
173 174 4.515944 CCATTTGTTACCACACGAACCTAA 59.484 41.667 0.00 0.00 30.32 2.69
174 175 5.334569 CCATTTGTTACCACACGAACCTAAG 60.335 44.000 0.00 0.00 30.32 2.18
175 176 2.758009 TGTTACCACACGAACCTAAGC 58.242 47.619 0.00 0.00 0.00 3.09
176 177 2.366266 TGTTACCACACGAACCTAAGCT 59.634 45.455 0.00 0.00 0.00 3.74
177 178 3.573538 TGTTACCACACGAACCTAAGCTA 59.426 43.478 0.00 0.00 0.00 3.32
178 179 4.039004 TGTTACCACACGAACCTAAGCTAA 59.961 41.667 0.00 0.00 0.00 3.09
179 180 3.314541 ACCACACGAACCTAAGCTAAG 57.685 47.619 0.00 0.00 0.00 2.18
180 181 2.028385 ACCACACGAACCTAAGCTAAGG 60.028 50.000 0.00 0.00 42.82 2.69
190 191 3.610911 CCTAAGCTAAGGTCCTGTTTGG 58.389 50.000 0.00 0.00 37.10 3.28
191 192 3.009143 CCTAAGCTAAGGTCCTGTTTGGT 59.991 47.826 0.00 0.00 37.07 3.67
192 193 3.595190 AAGCTAAGGTCCTGTTTGGTT 57.405 42.857 0.00 0.00 37.07 3.67
193 194 3.141767 AGCTAAGGTCCTGTTTGGTTC 57.858 47.619 0.00 0.00 37.07 3.62
194 195 2.160205 GCTAAGGTCCTGTTTGGTTCC 58.840 52.381 0.00 0.00 37.07 3.62
195 196 2.488347 GCTAAGGTCCTGTTTGGTTCCA 60.488 50.000 0.00 0.00 37.07 3.53
196 197 2.838637 AAGGTCCTGTTTGGTTCCAA 57.161 45.000 0.00 0.00 37.07 3.53
197 198 2.838637 AGGTCCTGTTTGGTTCCAAA 57.161 45.000 12.29 12.29 37.07 3.28
198 199 3.328535 AGGTCCTGTTTGGTTCCAAAT 57.671 42.857 18.11 0.31 38.07 2.32
199 200 4.463050 AGGTCCTGTTTGGTTCCAAATA 57.537 40.909 18.11 14.87 38.07 1.40
200 201 4.810345 AGGTCCTGTTTGGTTCCAAATAA 58.190 39.130 18.11 10.23 38.07 1.40
201 202 4.832823 AGGTCCTGTTTGGTTCCAAATAAG 59.167 41.667 18.11 17.05 38.07 1.73
202 203 4.587262 GGTCCTGTTTGGTTCCAAATAAGT 59.413 41.667 18.11 0.00 38.07 2.24
203 204 5.278808 GGTCCTGTTTGGTTCCAAATAAGTC 60.279 44.000 18.11 8.65 38.07 3.01
204 205 5.300792 GTCCTGTTTGGTTCCAAATAAGTCA 59.699 40.000 18.11 10.94 38.07 3.41
205 206 6.015434 GTCCTGTTTGGTTCCAAATAAGTCAT 60.015 38.462 18.11 0.00 38.07 3.06
206 207 6.553100 TCCTGTTTGGTTCCAAATAAGTCATT 59.447 34.615 18.11 0.00 38.07 2.57
207 208 7.726291 TCCTGTTTGGTTCCAAATAAGTCATTA 59.274 33.333 18.11 2.70 38.07 1.90
208 209 8.364142 CCTGTTTGGTTCCAAATAAGTCATTAA 58.636 33.333 18.11 0.00 38.07 1.40
209 210 9.191995 CTGTTTGGTTCCAAATAAGTCATTAAC 57.808 33.333 18.11 4.50 38.07 2.01
210 211 8.919145 TGTTTGGTTCCAAATAAGTCATTAACT 58.081 29.630 18.11 0.00 37.76 2.24
211 212 9.758651 GTTTGGTTCCAAATAAGTCATTAACTT 57.241 29.630 18.11 0.00 39.75 2.66
232 233 8.738645 AACTTATAAGATGGAAAGATGTGGTC 57.261 34.615 19.38 0.00 0.00 4.02
233 234 7.861629 ACTTATAAGATGGAAAGATGTGGTCA 58.138 34.615 19.38 0.00 0.00 4.02
234 235 7.989741 ACTTATAAGATGGAAAGATGTGGTCAG 59.010 37.037 19.38 0.00 0.00 3.51
235 236 4.916041 AAGATGGAAAGATGTGGTCAGA 57.084 40.909 0.00 0.00 0.00 3.27
236 237 5.447778 AAGATGGAAAGATGTGGTCAGAT 57.552 39.130 0.00 0.00 0.00 2.90
237 238 6.566079 AAGATGGAAAGATGTGGTCAGATA 57.434 37.500 0.00 0.00 0.00 1.98
238 239 6.566079 AGATGGAAAGATGTGGTCAGATAA 57.434 37.500 0.00 0.00 0.00 1.75
239 240 7.146715 AGATGGAAAGATGTGGTCAGATAAT 57.853 36.000 0.00 0.00 0.00 1.28
240 241 7.580910 AGATGGAAAGATGTGGTCAGATAATT 58.419 34.615 0.00 0.00 0.00 1.40
241 242 8.057623 AGATGGAAAGATGTGGTCAGATAATTT 58.942 33.333 0.00 0.00 0.00 1.82
242 243 9.342308 GATGGAAAGATGTGGTCAGATAATTTA 57.658 33.333 0.00 0.00 0.00 1.40
243 244 9.872684 ATGGAAAGATGTGGTCAGATAATTTAT 57.127 29.630 0.00 0.00 0.00 1.40
251 252 9.784531 ATGTGGTCAGATAATTTATAAGTCAGG 57.215 33.333 0.00 0.00 0.00 3.86
252 253 8.768397 TGTGGTCAGATAATTTATAAGTCAGGT 58.232 33.333 0.00 0.00 0.00 4.00
253 254 9.046296 GTGGTCAGATAATTTATAAGTCAGGTG 57.954 37.037 0.00 0.00 0.00 4.00
254 255 8.988060 TGGTCAGATAATTTATAAGTCAGGTGA 58.012 33.333 0.00 0.00 0.00 4.02
255 256 9.482627 GGTCAGATAATTTATAAGTCAGGTGAG 57.517 37.037 0.00 0.00 0.00 3.51
260 261 9.832445 GATAATTTATAAGTCAGGTGAGAACCA 57.168 33.333 0.00 0.00 0.00 3.67
261 262 9.838339 ATAATTTATAAGTCAGGTGAGAACCAG 57.162 33.333 0.00 0.00 0.00 4.00
262 263 6.928348 TTTATAAGTCAGGTGAGAACCAGA 57.072 37.500 0.00 0.00 0.00 3.86
263 264 4.810191 ATAAGTCAGGTGAGAACCAGAC 57.190 45.455 11.31 11.31 43.83 3.51
264 265 0.962489 AGTCAGGTGAGAACCAGACG 59.038 55.000 12.89 0.00 46.71 4.18
265 266 0.038159 GTCAGGTGAGAACCAGACGG 60.038 60.000 4.90 0.00 36.74 4.79
266 267 1.185618 TCAGGTGAGAACCAGACGGG 61.186 60.000 0.00 0.00 44.81 5.28
267 268 2.047179 GGTGAGAACCAGACGGGC 60.047 66.667 0.00 0.00 42.05 6.13
268 269 2.741092 GTGAGAACCAGACGGGCA 59.259 61.111 0.00 0.00 42.05 5.36
269 270 1.070786 GTGAGAACCAGACGGGCAA 59.929 57.895 0.00 0.00 42.05 4.52
270 271 0.321653 GTGAGAACCAGACGGGCAAT 60.322 55.000 0.00 0.00 42.05 3.56
271 272 0.400213 TGAGAACCAGACGGGCAATT 59.600 50.000 0.00 0.00 42.05 2.32
272 273 1.202879 TGAGAACCAGACGGGCAATTT 60.203 47.619 0.00 0.00 42.05 1.82
273 274 2.039216 TGAGAACCAGACGGGCAATTTA 59.961 45.455 0.00 0.00 42.05 1.40
274 275 3.279434 GAGAACCAGACGGGCAATTTAT 58.721 45.455 0.00 0.00 42.05 1.40
275 276 4.080807 TGAGAACCAGACGGGCAATTTATA 60.081 41.667 0.00 0.00 42.05 0.98
276 277 4.850680 AGAACCAGACGGGCAATTTATAA 58.149 39.130 0.00 0.00 42.05 0.98
277 278 5.258051 AGAACCAGACGGGCAATTTATAAA 58.742 37.500 0.00 0.00 42.05 1.40
278 279 5.891551 AGAACCAGACGGGCAATTTATAAAT 59.108 36.000 4.81 4.81 42.05 1.40
279 280 5.767816 ACCAGACGGGCAATTTATAAATC 57.232 39.130 11.08 0.25 42.05 2.17
280 281 5.197451 ACCAGACGGGCAATTTATAAATCA 58.803 37.500 11.08 0.00 42.05 2.57
281 282 5.833131 ACCAGACGGGCAATTTATAAATCAT 59.167 36.000 11.08 0.00 42.05 2.45
282 283 6.151691 CCAGACGGGCAATTTATAAATCATG 58.848 40.000 11.08 8.10 0.00 3.07
283 284 6.239008 CCAGACGGGCAATTTATAAATCATGT 60.239 38.462 11.08 6.27 0.00 3.21
284 285 6.638063 CAGACGGGCAATTTATAAATCATGTG 59.362 38.462 11.08 7.12 0.00 3.21
285 286 6.545666 AGACGGGCAATTTATAAATCATGTGA 59.454 34.615 11.08 0.00 0.00 3.58
286 287 6.503524 ACGGGCAATTTATAAATCATGTGAC 58.496 36.000 11.08 7.85 0.00 3.67
287 288 6.321181 ACGGGCAATTTATAAATCATGTGACT 59.679 34.615 11.08 0.00 0.00 3.41
288 289 7.147915 ACGGGCAATTTATAAATCATGTGACTT 60.148 33.333 11.08 0.00 0.00 3.01
289 290 8.349245 CGGGCAATTTATAAATCATGTGACTTA 58.651 33.333 11.08 0.00 0.00 2.24
301 302 9.685276 AAATCATGTGACTTATAAATCAGGTGA 57.315 29.630 11.36 11.36 0.00 4.02
302 303 9.857656 AATCATGTGACTTATAAATCAGGTGAT 57.142 29.630 13.85 13.85 34.25 3.06
303 304 9.857656 ATCATGTGACTTATAAATCAGGTGATT 57.142 29.630 13.85 0.00 45.91 2.57
316 317 7.552050 AATCAGGTGATTTATTGGAACCAAA 57.448 32.000 10.36 0.00 41.64 3.28
317 318 6.339587 TCAGGTGATTTATTGGAACCAAAC 57.660 37.500 10.36 3.26 39.55 2.93
318 319 5.835819 TCAGGTGATTTATTGGAACCAAACA 59.164 36.000 10.36 0.00 39.55 2.83
319 320 6.496565 TCAGGTGATTTATTGGAACCAAACAT 59.503 34.615 10.36 3.32 39.55 2.71
320 321 6.591062 CAGGTGATTTATTGGAACCAAACATG 59.409 38.462 10.36 7.12 39.55 3.21
321 322 5.351189 GGTGATTTATTGGAACCAAACATGC 59.649 40.000 10.36 2.16 39.55 4.06
322 323 5.351189 GTGATTTATTGGAACCAAACATGCC 59.649 40.000 10.36 0.64 39.55 4.40
380 381 4.471726 GCACCTGCATCTGCGTGC 62.472 66.667 15.87 15.87 45.70 5.34
404 405 2.973694 GCATGGATGGCAAAAGACAT 57.026 45.000 0.00 0.00 0.00 3.06
405 406 2.817901 GCATGGATGGCAAAAGACATC 58.182 47.619 2.71 2.71 42.05 3.06
406 407 2.429610 GCATGGATGGCAAAAGACATCT 59.570 45.455 10.80 0.00 42.34 2.90
407 408 3.490419 GCATGGATGGCAAAAGACATCTC 60.490 47.826 10.80 2.83 42.34 2.75
408 409 3.726557 TGGATGGCAAAAGACATCTCT 57.273 42.857 10.80 0.00 42.34 3.10
409 410 4.842531 TGGATGGCAAAAGACATCTCTA 57.157 40.909 10.80 0.00 42.34 2.43
410 411 4.517285 TGGATGGCAAAAGACATCTCTAC 58.483 43.478 10.80 0.00 42.34 2.59
411 412 3.879892 GGATGGCAAAAGACATCTCTACC 59.120 47.826 10.80 0.00 42.34 3.18
412 413 3.350219 TGGCAAAAGACATCTCTACCC 57.650 47.619 0.00 0.00 0.00 3.69
413 414 2.280628 GGCAAAAGACATCTCTACCCG 58.719 52.381 0.00 0.00 0.00 5.28
414 415 1.666189 GCAAAAGACATCTCTACCCGC 59.334 52.381 0.00 0.00 0.00 6.13
415 416 1.927174 CAAAAGACATCTCTACCCGCG 59.073 52.381 0.00 0.00 0.00 6.46
416 417 0.179108 AAAGACATCTCTACCCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
417 418 1.320344 AAGACATCTCTACCCGCGCA 61.320 55.000 8.75 0.00 0.00 6.09
418 419 1.109920 AGACATCTCTACCCGCGCAT 61.110 55.000 8.75 0.00 0.00 4.73
419 420 0.941463 GACATCTCTACCCGCGCATG 60.941 60.000 8.75 3.08 0.00 4.06
420 421 1.665916 CATCTCTACCCGCGCATGG 60.666 63.158 8.75 10.18 0.00 3.66
421 422 3.521529 ATCTCTACCCGCGCATGGC 62.522 63.158 8.75 0.00 38.69 4.40
422 423 4.529219 CTCTACCCGCGCATGGCA 62.529 66.667 8.75 0.00 43.84 4.92
423 424 3.814615 CTCTACCCGCGCATGGCAT 62.815 63.158 8.75 0.00 43.84 4.40
424 425 3.653009 CTACCCGCGCATGGCATG 61.653 66.667 22.99 22.99 43.84 4.06
430 431 4.961511 GCGCATGGCATGGCATGG 62.962 66.667 44.47 36.70 42.87 3.66
458 459 0.109132 GCACCTTGGGCTTTGATTCG 60.109 55.000 0.00 0.00 0.00 3.34
460 461 0.539438 ACCTTGGGCTTTGATTCGCA 60.539 50.000 0.00 0.00 0.00 5.10
482 484 4.035102 GGCCCTGTCCCGAAAGCT 62.035 66.667 0.00 0.00 0.00 3.74
625 646 1.601412 GCTCACTGCTTCCTTGTTTGC 60.601 52.381 0.00 0.00 38.95 3.68
630 651 1.372128 GCTTCCTTGTTTGCGGCTG 60.372 57.895 0.00 0.00 0.00 4.85
683 704 0.586502 CGCTTATTTGAACCTCGCGC 60.587 55.000 0.00 0.00 32.60 6.86
684 705 0.727398 GCTTATTTGAACCTCGCGCT 59.273 50.000 5.56 0.00 0.00 5.92
685 706 1.267582 GCTTATTTGAACCTCGCGCTC 60.268 52.381 5.56 0.00 0.00 5.03
686 707 0.996462 TTATTTGAACCTCGCGCTCG 59.004 50.000 5.56 0.00 0.00 5.03
687 708 0.171679 TATTTGAACCTCGCGCTCGA 59.828 50.000 5.56 0.00 43.28 4.04
689 710 0.669318 TTTGAACCTCGCGCTCGATT 60.669 50.000 5.56 0.00 44.56 3.34
692 713 1.274596 GAACCTCGCGCTCGATTAAA 58.725 50.000 5.56 0.00 44.56 1.52
725 752 2.258013 TGGTTGTGCTGCTTACGCC 61.258 57.895 0.00 0.00 34.43 5.68
749 779 2.412089 GACGATCAAACTTCCGTCCTTG 59.588 50.000 0.00 0.00 43.71 3.61
766 796 1.433053 TTGTTGGGTCGAAGCACACG 61.433 55.000 0.00 0.00 0.00 4.49
767 797 2.280524 TTGGGTCGAAGCACACGG 60.281 61.111 0.00 0.00 0.00 4.94
779 881 0.249741 GCACACGGACCAGTACACTT 60.250 55.000 0.00 0.00 0.00 3.16
788 890 2.037251 GACCAGTACACTTTCCAGCTCA 59.963 50.000 0.00 0.00 0.00 4.26
804 906 1.572085 CTCAGAACAAGGCGGCTGTG 61.572 60.000 14.21 15.32 0.00 3.66
828 930 2.222227 AGCCTTGAACCCAAAGGATC 57.778 50.000 6.39 0.00 35.52 3.36
829 931 1.428912 AGCCTTGAACCCAAAGGATCA 59.571 47.619 6.39 0.00 42.79 2.92
830 932 1.546029 GCCTTGAACCCAAAGGATCAC 59.454 52.381 6.39 0.00 44.05 3.06
831 933 2.875296 CCTTGAACCCAAAGGATCACA 58.125 47.619 0.00 0.00 44.05 3.58
832 934 2.558359 CCTTGAACCCAAAGGATCACAC 59.442 50.000 0.00 0.00 44.05 3.82
835 938 1.535462 GAACCCAAAGGATCACACACG 59.465 52.381 0.00 0.00 35.07 4.49
837 940 1.270839 ACCCAAAGGATCACACACGAG 60.271 52.381 0.00 0.00 36.73 4.18
839 942 1.609061 CCAAAGGATCACACACGAGCT 60.609 52.381 0.00 0.00 0.00 4.09
843 946 1.746220 AGGATCACACACGAGCTCTAC 59.254 52.381 12.85 0.00 0.00 2.59
853 956 1.932511 ACGAGCTCTACGCACTAGTAC 59.067 52.381 12.85 0.00 42.61 2.73
855 958 2.200067 GAGCTCTACGCACTAGTACGA 58.800 52.381 21.99 5.16 42.61 3.43
861 964 5.333952 GCTCTACGCACTAGTACGATACAAT 60.334 44.000 21.99 1.01 38.92 2.71
862 965 6.128715 GCTCTACGCACTAGTACGATACAATA 60.129 42.308 21.99 2.17 38.92 1.90
863 966 7.110179 TCTACGCACTAGTACGATACAATAC 57.890 40.000 21.99 0.00 0.00 1.89
864 967 5.739752 ACGCACTAGTACGATACAATACA 57.260 39.130 21.99 0.00 0.00 2.29
865 968 6.122850 ACGCACTAGTACGATACAATACAA 57.877 37.500 21.99 0.00 0.00 2.41
866 969 5.967674 ACGCACTAGTACGATACAATACAAC 59.032 40.000 21.99 0.00 0.00 3.32
867 970 5.397534 CGCACTAGTACGATACAATACAACC 59.602 44.000 10.04 0.00 0.00 3.77
868 971 6.267817 GCACTAGTACGATACAATACAACCA 58.732 40.000 0.00 0.00 0.00 3.67
869 972 6.197842 GCACTAGTACGATACAATACAACCAC 59.802 42.308 0.00 0.00 0.00 4.16
870 973 7.252708 CACTAGTACGATACAATACAACCACA 58.747 38.462 0.00 0.00 0.00 4.17
894 997 1.079750 GAGCCACCTCTGTTCCGTC 60.080 63.158 0.00 0.00 35.16 4.79
910 1013 3.884774 TCCAAGTTGCGGGGCACT 61.885 61.111 0.00 0.00 38.71 4.40
911 1014 2.912025 CCAAGTTGCGGGGCACTT 60.912 61.111 0.00 0.00 38.71 3.16
912 1015 2.336088 CAAGTTGCGGGGCACTTG 59.664 61.111 14.01 14.01 38.71 3.16
913 1016 2.123897 AAGTTGCGGGGCACTTGT 60.124 55.556 0.00 0.00 38.71 3.16
914 1017 2.193536 AAGTTGCGGGGCACTTGTC 61.194 57.895 0.00 0.00 38.71 3.18
915 1018 2.902423 AAGTTGCGGGGCACTTGTCA 62.902 55.000 0.00 0.00 38.71 3.58
916 1019 2.115052 TTGCGGGGCACTTGTCAT 59.885 55.556 0.00 0.00 38.71 3.06
917 1020 1.530419 TTGCGGGGCACTTGTCATT 60.530 52.632 0.00 0.00 38.71 2.57
932 1035 0.952984 TCATTTGTCATGCGCGTCCA 60.953 50.000 8.43 0.00 0.00 4.02
937 1040 2.027073 GTCATGCGCGTCCACTTCA 61.027 57.895 8.43 0.00 0.00 3.02
954 1058 0.544357 TCAACCCCTCGTCACCTCAT 60.544 55.000 0.00 0.00 0.00 2.90
1009 1119 3.983044 AGATCGCTCCCCCATTTATAC 57.017 47.619 0.00 0.00 0.00 1.47
1017 1127 1.314730 CCCCATTTATACGCACACCC 58.685 55.000 0.00 0.00 0.00 4.61
1023 1133 2.787601 TTATACGCACACCCGAGATC 57.212 50.000 0.00 0.00 0.00 2.75
1028 1138 0.102300 CGCACACCCGAGATCACATA 59.898 55.000 0.00 0.00 0.00 2.29
1030 1140 1.137086 GCACACCCGAGATCACATACT 59.863 52.381 0.00 0.00 0.00 2.12
1037 1147 3.493272 CCGAGATCACATACTACATCGC 58.507 50.000 0.00 0.00 0.00 4.58
1038 1148 3.156753 CGAGATCACATACTACATCGCG 58.843 50.000 0.00 0.00 33.33 5.87
1039 1149 3.364068 CGAGATCACATACTACATCGCGT 60.364 47.826 5.77 0.00 34.89 6.01
1040 1150 3.890128 AGATCACATACTACATCGCGTG 58.110 45.455 5.77 6.57 0.00 5.34
1041 1151 3.315470 AGATCACATACTACATCGCGTGT 59.685 43.478 16.36 16.36 44.95 4.49
1056 1166 2.106131 TGTCGTGAGCGTTGCACT 59.894 55.556 0.00 0.00 39.49 4.40
1073 1183 2.402305 CACTAGCAGCTTGATCGATCC 58.598 52.381 22.31 7.46 0.00 3.36
1074 1184 2.035704 CACTAGCAGCTTGATCGATCCT 59.964 50.000 22.31 12.95 0.00 3.24
1075 1185 2.295909 ACTAGCAGCTTGATCGATCCTC 59.704 50.000 22.31 11.09 0.00 3.71
1076 1186 1.412079 AGCAGCTTGATCGATCCTCT 58.588 50.000 22.31 13.07 0.00 3.69
1078 1188 1.500108 CAGCTTGATCGATCCTCTGC 58.500 55.000 22.31 18.62 0.00 4.26
1079 1189 0.031857 AGCTTGATCGATCCTCTGCG 59.968 55.000 22.31 5.78 0.00 5.18
1080 1190 0.249238 GCTTGATCGATCCTCTGCGT 60.249 55.000 22.31 0.00 0.00 5.24
1083 1193 1.066422 GATCGATCCTCTGCGTGCA 59.934 57.895 14.76 0.00 0.00 4.57
1086 1196 1.446792 CGATCCTCTGCGTGCAGTT 60.447 57.895 20.33 5.58 43.96 3.16
1147 1263 3.804193 GCCGCTAACCACTGCAGC 61.804 66.667 15.27 0.00 0.00 5.25
1148 1264 2.358615 CCGCTAACCACTGCAGCA 60.359 61.111 15.27 0.00 34.94 4.41
1149 1265 2.393768 CCGCTAACCACTGCAGCAG 61.394 63.158 21.54 21.54 34.94 4.24
1150 1266 2.393768 CGCTAACCACTGCAGCAGG 61.394 63.158 26.38 20.88 35.51 4.85
1151 1267 1.302832 GCTAACCACTGCAGCAGGT 60.303 57.895 26.38 22.08 35.51 4.00
1152 1268 1.301677 GCTAACCACTGCAGCAGGTC 61.302 60.000 26.25 13.92 35.51 3.85
1154 1270 2.124507 TAACCACTGCAGCAGGTCCC 62.125 60.000 26.25 0.00 35.51 4.46
1155 1271 3.644606 CCACTGCAGCAGGTCCCT 61.645 66.667 26.38 1.60 35.51 4.20
1156 1272 2.433446 CACTGCAGCAGGTCCCTT 59.567 61.111 26.38 0.79 35.51 3.95
1157 1273 1.228367 CACTGCAGCAGGTCCCTTT 60.228 57.895 26.38 0.00 35.51 3.11
1158 1274 1.073897 ACTGCAGCAGGTCCCTTTC 59.926 57.895 26.38 0.00 35.51 2.62
1159 1275 1.676967 CTGCAGCAGGTCCCTTTCC 60.677 63.158 15.35 0.00 0.00 3.13
1160 1276 2.134630 CTGCAGCAGGTCCCTTTCCT 62.135 60.000 15.35 0.00 35.45 3.36
1164 1280 3.500635 CAGGTCCCTTTCCTGCCT 58.499 61.111 0.00 0.00 44.46 4.75
1165 1281 1.301293 CAGGTCCCTTTCCTGCCTC 59.699 63.158 0.00 0.00 44.46 4.70
1166 1282 2.269241 GGTCCCTTTCCTGCCTCG 59.731 66.667 0.00 0.00 0.00 4.63
1167 1283 2.593956 GGTCCCTTTCCTGCCTCGT 61.594 63.158 0.00 0.00 0.00 4.18
1168 1284 1.079057 GTCCCTTTCCTGCCTCGTC 60.079 63.158 0.00 0.00 0.00 4.20
1169 1285 1.535444 TCCCTTTCCTGCCTCGTCA 60.535 57.895 0.00 0.00 0.00 4.35
1170 1286 1.078848 CCCTTTCCTGCCTCGTCAG 60.079 63.158 0.00 0.00 0.00 3.51
1188 1304 2.409651 GGAGACCTACGCGCTCTG 59.590 66.667 5.73 0.00 0.00 3.35
1189 1305 2.278271 GAGACCTACGCGCTCTGC 60.278 66.667 5.73 0.00 41.47 4.26
1190 1306 3.759766 GAGACCTACGCGCTCTGCC 62.760 68.421 5.73 0.00 42.08 4.85
1191 1307 4.129737 GACCTACGCGCTCTGCCA 62.130 66.667 5.73 0.00 42.08 4.92
1192 1308 3.432051 GACCTACGCGCTCTGCCAT 62.432 63.158 5.73 0.00 42.08 4.40
1193 1309 2.963854 CCTACGCGCTCTGCCATG 60.964 66.667 5.73 0.00 42.08 3.66
1194 1310 2.963854 CTACGCGCTCTGCCATGG 60.964 66.667 7.63 7.63 42.08 3.66
1259 1420 3.053849 GACAGCGAGGAGGACGACC 62.054 68.421 0.00 0.00 0.00 4.79
1280 1441 1.421485 GCCATGCTCGACACGAAAG 59.579 57.895 0.00 0.00 34.74 2.62
1289 1450 0.109873 CGACACGAAAGAGGTAGCGT 60.110 55.000 0.00 0.00 37.48 5.07
1327 1494 1.825090 TGACCCATTCATGTGAGCAC 58.175 50.000 0.00 0.00 0.00 4.40
1381 1645 4.336713 CAGGTGATACTGAACGAGATGAGA 59.663 45.833 0.00 0.00 40.97 3.27
1403 1667 2.110006 GGGAGATGAGGAAGCGGC 59.890 66.667 0.00 0.00 0.00 6.53
1485 1749 2.809601 CCACCCGAGAAGCGTTCG 60.810 66.667 1.35 1.35 38.67 3.95
1503 1767 3.121019 CGGGAAGGCCTCGAGTAG 58.879 66.667 5.23 0.00 31.93 2.57
1518 1782 0.109689 AGTAGTGAGAAGTGCGTCGC 60.110 55.000 11.10 11.10 0.00 5.19
1519 1783 1.071567 GTAGTGAGAAGTGCGTCGCC 61.072 60.000 15.88 6.17 0.00 5.54
1531 1795 3.379445 GTCGCCGTGGAGGAGGAA 61.379 66.667 0.00 0.00 45.00 3.36
1538 1802 1.551452 CGTGGAGGAGGAAGAGAAGT 58.449 55.000 0.00 0.00 0.00 3.01
1539 1803 1.474879 CGTGGAGGAGGAAGAGAAGTC 59.525 57.143 0.00 0.00 0.00 3.01
1828 2131 5.232414 GCTTACAGCTTAAAGATCACTACCG 59.768 44.000 8.66 0.00 38.45 4.02
1849 2155 2.156310 GGTTAATAGTTAATCGGCGCCG 59.844 50.000 42.13 42.13 41.35 6.46
1869 2175 3.365969 CCGCCATTACAGAAACAAGAACC 60.366 47.826 0.00 0.00 0.00 3.62
1900 2206 1.970640 AGAATGAAACCCCCAAACTGC 59.029 47.619 0.00 0.00 0.00 4.40
1910 2216 2.291282 CCCCCAAACTGCTGGTATACAA 60.291 50.000 5.01 0.00 34.33 2.41
1911 2217 2.752903 CCCCAAACTGCTGGTATACAAC 59.247 50.000 5.01 0.00 34.33 3.32
1912 2218 2.418628 CCCAAACTGCTGGTATACAACG 59.581 50.000 5.01 0.00 34.33 4.10
1913 2219 2.418628 CCAAACTGCTGGTATACAACGG 59.581 50.000 5.01 1.06 0.00 4.44
1914 2220 1.734163 AACTGCTGGTATACAACGGC 58.266 50.000 5.01 5.65 0.00 5.68
1915 2221 0.902531 ACTGCTGGTATACAACGGCT 59.097 50.000 5.01 0.00 0.00 5.52
1916 2222 1.290203 CTGCTGGTATACAACGGCTG 58.710 55.000 5.01 5.47 0.00 4.85
1917 2223 0.742990 TGCTGGTATACAACGGCTGC 60.743 55.000 5.01 3.46 0.00 5.25
1920 2226 1.867233 CTGGTATACAACGGCTGCATC 59.133 52.381 5.01 0.00 0.00 3.91
1921 2227 1.226746 GGTATACAACGGCTGCATCC 58.773 55.000 5.01 0.00 0.00 3.51
1931 2237 2.046988 CTGCATCCGGACAGCACA 60.047 61.111 24.93 10.62 34.13 4.57
1932 2238 2.046988 TGCATCCGGACAGCACAG 60.047 61.111 24.93 3.94 32.55 3.66
1933 2239 3.503363 GCATCCGGACAGCACAGC 61.503 66.667 22.13 8.22 0.00 4.40
1934 2240 2.267006 CATCCGGACAGCACAGCT 59.733 61.111 6.12 0.00 40.77 4.24
1935 2241 1.517361 CATCCGGACAGCACAGCTA 59.483 57.895 6.12 0.00 36.40 3.32
1936 2242 0.807667 CATCCGGACAGCACAGCTAC 60.808 60.000 6.12 0.00 36.40 3.58
1937 2243 1.257750 ATCCGGACAGCACAGCTACA 61.258 55.000 6.12 0.00 36.40 2.74
1938 2244 1.005037 CCGGACAGCACAGCTACAA 60.005 57.895 0.00 0.00 36.40 2.41
1939 2245 0.391661 CCGGACAGCACAGCTACAAT 60.392 55.000 0.00 0.00 36.40 2.71
1940 2246 0.723414 CGGACAGCACAGCTACAATG 59.277 55.000 0.00 0.00 36.40 2.82
1941 2247 1.672737 CGGACAGCACAGCTACAATGA 60.673 52.381 0.00 0.00 36.40 2.57
1942 2248 2.426522 GGACAGCACAGCTACAATGAA 58.573 47.619 0.00 0.00 36.40 2.57
1943 2249 2.160417 GGACAGCACAGCTACAATGAAC 59.840 50.000 0.00 0.00 36.40 3.18
1944 2250 2.807967 GACAGCACAGCTACAATGAACA 59.192 45.455 0.00 0.00 36.40 3.18
1945 2251 2.810274 ACAGCACAGCTACAATGAACAG 59.190 45.455 0.00 0.00 36.40 3.16
1946 2252 3.069289 CAGCACAGCTACAATGAACAGA 58.931 45.455 0.00 0.00 36.40 3.41
1947 2253 3.499537 CAGCACAGCTACAATGAACAGAA 59.500 43.478 0.00 0.00 36.40 3.02
1950 2256 5.242393 AGCACAGCTACAATGAACAGAAAAT 59.758 36.000 0.00 0.00 36.99 1.82
1979 2285 3.436700 AAAAGGGCGTGAAAAGAACTG 57.563 42.857 0.00 0.00 0.00 3.16
2006 2312 4.838152 TTCAGATCAGCCGCCGCC 62.838 66.667 0.00 0.00 34.57 6.13
2527 2833 0.605589 CCTCCTGATCCGCCATAGAC 59.394 60.000 0.00 0.00 0.00 2.59
2536 2842 4.301027 GCCATAGACGGGGCTCGG 62.301 72.222 13.20 0.00 46.74 4.63
2550 2856 2.974489 CTCGGCTGCTTGGTTGCTG 61.974 63.158 0.00 0.00 35.44 4.41
2680 3000 3.757248 ATGCCCGAGTGCCGAATCC 62.757 63.158 0.00 0.00 41.76 3.01
2719 3039 0.106967 GGCTCATCCCCTTTGTCCTC 60.107 60.000 0.00 0.00 0.00 3.71
2723 3043 3.815757 GCTCATCCCCTTTGTCCTCTTTT 60.816 47.826 0.00 0.00 0.00 2.27
2724 3044 4.411013 CTCATCCCCTTTGTCCTCTTTTT 58.589 43.478 0.00 0.00 0.00 1.94
2892 3224 4.735132 GGCAGACGGCGCACAGTA 62.735 66.667 10.83 0.00 46.16 2.74
2893 3225 2.736995 GCAGACGGCGCACAGTAA 60.737 61.111 10.83 0.00 0.00 2.24
2894 3226 2.730672 GCAGACGGCGCACAGTAAG 61.731 63.158 10.83 3.42 0.00 2.34
2895 3227 1.080772 CAGACGGCGCACAGTAAGA 60.081 57.895 10.83 0.00 0.00 2.10
2896 3228 1.073216 CAGACGGCGCACAGTAAGAG 61.073 60.000 10.83 0.00 0.00 2.85
2897 3229 2.432628 ACGGCGCACAGTAAGAGC 60.433 61.111 10.83 0.00 0.00 4.09
2902 3234 4.988065 GCACAGTAAGAGCGTCCA 57.012 55.556 0.00 0.00 0.00 4.02
2903 3235 2.446341 GCACAGTAAGAGCGTCCAC 58.554 57.895 0.00 0.00 0.00 4.02
2904 3236 1.344942 GCACAGTAAGAGCGTCCACG 61.345 60.000 0.00 0.00 43.27 4.94
2905 3237 0.732880 CACAGTAAGAGCGTCCACGG 60.733 60.000 0.55 0.00 40.23 4.94
2906 3238 1.805945 CAGTAAGAGCGTCCACGGC 60.806 63.158 0.55 0.00 40.23 5.68
2907 3239 2.508663 GTAAGAGCGTCCACGGCC 60.509 66.667 0.55 0.00 40.23 6.13
2908 3240 2.992689 TAAGAGCGTCCACGGCCA 60.993 61.111 2.24 0.00 40.23 5.36
2909 3241 3.291101 TAAGAGCGTCCACGGCCAC 62.291 63.158 2.24 0.00 40.23 5.01
2914 3246 4.953868 CGTCCACGGCCACGAACA 62.954 66.667 7.54 0.00 44.60 3.18
2915 3247 3.041940 GTCCACGGCCACGAACAG 61.042 66.667 2.24 0.00 44.60 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.920446 ACACGCACATAGTCATGTTACA 58.080 40.909 0.00 0.00 42.98 2.41
115 116 1.548719 ACAGGTTGAGCTGTATACGCA 59.451 47.619 13.65 3.72 31.30 5.24
129 130 1.410004 TCGGTGTGAAGAGACAGGTT 58.590 50.000 0.00 0.00 0.00 3.50
169 170 3.009143 ACCAAACAGGACCTTAGCTTAGG 59.991 47.826 17.22 17.22 41.22 2.69
170 171 4.287766 ACCAAACAGGACCTTAGCTTAG 57.712 45.455 0.00 0.00 41.22 2.18
171 172 4.506095 GGAACCAAACAGGACCTTAGCTTA 60.506 45.833 0.00 0.00 41.22 3.09
172 173 3.487372 GAACCAAACAGGACCTTAGCTT 58.513 45.455 0.00 0.00 41.22 3.74
173 174 2.224793 GGAACCAAACAGGACCTTAGCT 60.225 50.000 0.00 0.00 41.22 3.32
174 175 2.160205 GGAACCAAACAGGACCTTAGC 58.840 52.381 0.00 0.00 41.22 3.09
175 176 3.502123 TGGAACCAAACAGGACCTTAG 57.498 47.619 0.00 0.00 41.22 2.18
176 177 3.955524 TTGGAACCAAACAGGACCTTA 57.044 42.857 3.62 0.00 41.22 2.69
177 178 2.838637 TTGGAACCAAACAGGACCTT 57.161 45.000 3.62 0.00 41.22 3.50
178 179 2.838637 TTTGGAACCAAACAGGACCT 57.161 45.000 14.02 0.00 40.51 3.85
179 180 4.587262 ACTTATTTGGAACCAAACAGGACC 59.413 41.667 19.23 0.00 46.80 4.46
180 181 5.300792 TGACTTATTTGGAACCAAACAGGAC 59.699 40.000 19.23 10.68 46.80 3.85
181 182 5.450453 TGACTTATTTGGAACCAAACAGGA 58.550 37.500 19.23 8.44 46.80 3.86
182 183 5.782893 TGACTTATTTGGAACCAAACAGG 57.217 39.130 19.23 12.17 46.80 4.00
183 184 9.191995 GTTAATGACTTATTTGGAACCAAACAG 57.808 33.333 19.23 18.64 46.80 3.16
184 185 8.919145 AGTTAATGACTTATTTGGAACCAAACA 58.081 29.630 19.23 13.20 41.09 2.83
185 186 9.758651 AAGTTAATGACTTATTTGGAACCAAAC 57.241 29.630 19.23 8.57 46.61 2.93
206 207 9.832445 GACCACATCTTTCCATCTTATAAGTTA 57.168 33.333 12.19 0.00 0.00 2.24
207 208 8.328758 TGACCACATCTTTCCATCTTATAAGTT 58.671 33.333 12.19 1.23 0.00 2.66
208 209 7.861629 TGACCACATCTTTCCATCTTATAAGT 58.138 34.615 12.19 0.00 0.00 2.24
209 210 8.206867 TCTGACCACATCTTTCCATCTTATAAG 58.793 37.037 6.11 6.11 0.00 1.73
210 211 8.089625 TCTGACCACATCTTTCCATCTTATAA 57.910 34.615 0.00 0.00 0.00 0.98
211 212 7.675161 TCTGACCACATCTTTCCATCTTATA 57.325 36.000 0.00 0.00 0.00 0.98
212 213 6.566079 TCTGACCACATCTTTCCATCTTAT 57.434 37.500 0.00 0.00 0.00 1.73
213 214 6.566079 ATCTGACCACATCTTTCCATCTTA 57.434 37.500 0.00 0.00 0.00 2.10
214 215 4.916041 TCTGACCACATCTTTCCATCTT 57.084 40.909 0.00 0.00 0.00 2.40
215 216 6.566079 TTATCTGACCACATCTTTCCATCT 57.434 37.500 0.00 0.00 0.00 2.90
216 217 7.814264 AATTATCTGACCACATCTTTCCATC 57.186 36.000 0.00 0.00 0.00 3.51
217 218 9.872684 ATAAATTATCTGACCACATCTTTCCAT 57.127 29.630 0.00 0.00 0.00 3.41
225 226 9.784531 CCTGACTTATAAATTATCTGACCACAT 57.215 33.333 0.00 0.00 0.00 3.21
226 227 8.768397 ACCTGACTTATAAATTATCTGACCACA 58.232 33.333 0.00 0.00 0.00 4.17
227 228 9.046296 CACCTGACTTATAAATTATCTGACCAC 57.954 37.037 0.00 0.00 0.00 4.16
228 229 8.988060 TCACCTGACTTATAAATTATCTGACCA 58.012 33.333 0.00 0.00 0.00 4.02
229 230 9.482627 CTCACCTGACTTATAAATTATCTGACC 57.517 37.037 0.00 0.00 0.00 4.02
234 235 9.832445 TGGTTCTCACCTGACTTATAAATTATC 57.168 33.333 0.00 0.00 44.61 1.75
235 236 9.838339 CTGGTTCTCACCTGACTTATAAATTAT 57.162 33.333 0.00 0.00 44.61 1.28
236 237 9.042450 TCTGGTTCTCACCTGACTTATAAATTA 57.958 33.333 0.00 0.00 44.07 1.40
237 238 7.918076 TCTGGTTCTCACCTGACTTATAAATT 58.082 34.615 0.00 0.00 44.07 1.82
238 239 7.496346 TCTGGTTCTCACCTGACTTATAAAT 57.504 36.000 0.00 0.00 44.07 1.40
239 240 6.928348 TCTGGTTCTCACCTGACTTATAAA 57.072 37.500 0.00 0.00 44.07 1.40
247 248 1.185618 CCCGTCTGGTTCTCACCTGA 61.186 60.000 0.00 0.00 46.11 3.86
248 249 1.293498 CCCGTCTGGTTCTCACCTG 59.707 63.158 0.00 0.00 44.61 4.00
249 250 2.584391 GCCCGTCTGGTTCTCACCT 61.584 63.158 0.00 0.00 44.61 4.00
250 251 2.047179 GCCCGTCTGGTTCTCACC 60.047 66.667 0.00 0.00 44.56 4.02
251 252 0.321653 ATTGCCCGTCTGGTTCTCAC 60.322 55.000 0.00 0.00 36.04 3.51
252 253 0.400213 AATTGCCCGTCTGGTTCTCA 59.600 50.000 0.00 0.00 36.04 3.27
253 254 1.534729 AAATTGCCCGTCTGGTTCTC 58.465 50.000 0.00 0.00 36.04 2.87
254 255 2.871096 TAAATTGCCCGTCTGGTTCT 57.129 45.000 0.00 0.00 36.04 3.01
255 256 5.570234 TTTATAAATTGCCCGTCTGGTTC 57.430 39.130 0.00 0.00 36.04 3.62
256 257 5.654650 TGATTTATAAATTGCCCGTCTGGTT 59.345 36.000 11.92 0.00 36.04 3.67
257 258 5.197451 TGATTTATAAATTGCCCGTCTGGT 58.803 37.500 11.92 0.00 36.04 4.00
258 259 5.766150 TGATTTATAAATTGCCCGTCTGG 57.234 39.130 11.92 0.00 37.09 3.86
259 260 6.638063 CACATGATTTATAAATTGCCCGTCTG 59.362 38.462 11.92 4.65 0.00 3.51
260 261 6.545666 TCACATGATTTATAAATTGCCCGTCT 59.454 34.615 11.92 0.00 0.00 4.18
261 262 6.636850 GTCACATGATTTATAAATTGCCCGTC 59.363 38.462 11.92 0.00 0.00 4.79
262 263 6.321181 AGTCACATGATTTATAAATTGCCCGT 59.679 34.615 11.92 3.71 0.00 5.28
263 264 6.738114 AGTCACATGATTTATAAATTGCCCG 58.262 36.000 11.92 2.68 0.00 6.13
275 276 9.685276 TCACCTGATTTATAAGTCACATGATTT 57.315 29.630 6.58 0.00 0.00 2.17
276 277 9.857656 ATCACCTGATTTATAAGTCACATGATT 57.142 29.630 17.86 9.09 0.00 2.57
277 278 9.857656 AATCACCTGATTTATAAGTCACATGAT 57.142 29.630 17.86 17.86 41.64 2.45
292 293 7.016072 TGTTTGGTTCCAATAAATCACCTGATT 59.984 33.333 5.06 0.00 45.91 2.57
293 294 6.496565 TGTTTGGTTCCAATAAATCACCTGAT 59.503 34.615 5.06 0.00 36.07 2.90
294 295 5.835819 TGTTTGGTTCCAATAAATCACCTGA 59.164 36.000 5.06 0.00 0.00 3.86
295 296 6.095432 TGTTTGGTTCCAATAAATCACCTG 57.905 37.500 5.06 0.00 0.00 4.00
296 297 6.700352 CATGTTTGGTTCCAATAAATCACCT 58.300 36.000 5.06 0.00 0.00 4.00
297 298 5.351189 GCATGTTTGGTTCCAATAAATCACC 59.649 40.000 5.06 0.00 0.00 4.02
298 299 5.351189 GGCATGTTTGGTTCCAATAAATCAC 59.649 40.000 5.06 0.71 0.00 3.06
299 300 5.486526 GGCATGTTTGGTTCCAATAAATCA 58.513 37.500 5.06 2.00 0.00 2.57
300 301 4.875536 GGGCATGTTTGGTTCCAATAAATC 59.124 41.667 5.06 0.00 0.00 2.17
301 302 4.535692 AGGGCATGTTTGGTTCCAATAAAT 59.464 37.500 5.06 0.00 0.00 1.40
302 303 3.906846 AGGGCATGTTTGGTTCCAATAAA 59.093 39.130 5.06 0.00 0.00 1.40
303 304 3.515562 AGGGCATGTTTGGTTCCAATAA 58.484 40.909 5.06 0.00 0.00 1.40
304 305 3.182887 AGGGCATGTTTGGTTCCAATA 57.817 42.857 5.06 0.00 0.00 1.90
305 306 2.028561 AGGGCATGTTTGGTTCCAAT 57.971 45.000 5.06 0.00 0.00 3.16
306 307 2.685106 TAGGGCATGTTTGGTTCCAA 57.315 45.000 0.00 0.00 0.00 3.53
307 308 2.524306 CTTAGGGCATGTTTGGTTCCA 58.476 47.619 0.00 0.00 0.00 3.53
308 309 1.204704 GCTTAGGGCATGTTTGGTTCC 59.795 52.381 0.00 0.00 41.35 3.62
309 310 2.654749 GCTTAGGGCATGTTTGGTTC 57.345 50.000 0.00 0.00 41.35 3.62
319 320 6.610541 CGTGAAAACGAAATGCTTAGGGCA 62.611 45.833 0.00 0.00 45.04 5.36
320 321 3.242518 GTGAAAACGAAATGCTTAGGGC 58.757 45.455 0.00 0.00 42.22 5.19
321 322 3.187637 TCGTGAAAACGAAATGCTTAGGG 59.812 43.478 0.00 0.00 39.34 3.53
322 323 4.148891 GTCGTGAAAACGAAATGCTTAGG 58.851 43.478 2.07 0.00 44.12 2.69
381 382 2.911332 CTTTTGCCATCCATGCCGGC 62.911 60.000 22.73 22.73 46.43 6.13
382 383 1.142314 CTTTTGCCATCCATGCCGG 59.858 57.895 0.00 0.00 0.00 6.13
383 384 0.179129 GTCTTTTGCCATCCATGCCG 60.179 55.000 0.00 0.00 0.00 5.69
384 385 0.896923 TGTCTTTTGCCATCCATGCC 59.103 50.000 0.00 0.00 0.00 4.40
385 386 2.429610 AGATGTCTTTTGCCATCCATGC 59.570 45.455 0.00 0.00 38.57 4.06
386 387 3.952323 AGAGATGTCTTTTGCCATCCATG 59.048 43.478 0.00 0.00 38.57 3.66
387 388 4.246712 AGAGATGTCTTTTGCCATCCAT 57.753 40.909 0.00 0.00 38.57 3.41
388 389 3.726557 AGAGATGTCTTTTGCCATCCA 57.273 42.857 0.00 0.00 38.57 3.41
389 390 3.879892 GGTAGAGATGTCTTTTGCCATCC 59.120 47.826 0.00 0.00 38.57 3.51
390 391 3.879892 GGGTAGAGATGTCTTTTGCCATC 59.120 47.826 0.00 0.00 38.17 3.51
391 392 3.682718 CGGGTAGAGATGTCTTTTGCCAT 60.683 47.826 0.00 0.00 33.84 4.40
392 393 2.354704 CGGGTAGAGATGTCTTTTGCCA 60.355 50.000 0.00 0.00 33.84 4.92
393 394 2.280628 CGGGTAGAGATGTCTTTTGCC 58.719 52.381 0.00 0.00 33.84 4.52
394 395 1.666189 GCGGGTAGAGATGTCTTTTGC 59.334 52.381 0.00 0.00 33.84 3.68
395 396 1.927174 CGCGGGTAGAGATGTCTTTTG 59.073 52.381 0.00 0.00 33.84 2.44
396 397 1.739371 GCGCGGGTAGAGATGTCTTTT 60.739 52.381 8.83 0.00 33.84 2.27
397 398 0.179108 GCGCGGGTAGAGATGTCTTT 60.179 55.000 8.83 0.00 33.84 2.52
398 399 1.320344 TGCGCGGGTAGAGATGTCTT 61.320 55.000 8.83 0.00 33.84 3.01
399 400 1.109920 ATGCGCGGGTAGAGATGTCT 61.110 55.000 8.83 0.00 36.75 3.41
400 401 0.941463 CATGCGCGGGTAGAGATGTC 60.941 60.000 8.83 0.00 0.00 3.06
401 402 1.068083 CATGCGCGGGTAGAGATGT 59.932 57.895 8.83 0.00 0.00 3.06
402 403 1.665916 CCATGCGCGGGTAGAGATG 60.666 63.158 8.83 1.67 0.00 2.90
403 404 2.737180 CCATGCGCGGGTAGAGAT 59.263 61.111 8.83 0.00 0.00 2.75
404 405 4.221422 GCCATGCGCGGGTAGAGA 62.221 66.667 17.86 0.00 0.00 3.10
405 406 3.814615 ATGCCATGCGCGGGTAGAG 62.815 63.158 17.86 0.00 42.08 2.43
406 407 3.860605 ATGCCATGCGCGGGTAGA 61.861 61.111 17.86 4.71 42.08 2.59
407 408 3.653009 CATGCCATGCGCGGGTAG 61.653 66.667 17.86 6.02 42.08 3.18
413 414 4.961511 CCATGCCATGCCATGCGC 62.962 66.667 11.13 0.00 40.92 6.09
414 415 4.961511 GCCATGCCATGCCATGCG 62.962 66.667 11.13 6.04 40.92 4.73
415 416 3.177194 ATGCCATGCCATGCCATGC 62.177 57.895 11.13 7.49 40.92 4.06
416 417 1.301637 CATGCCATGCCATGCCATG 60.302 57.895 13.50 13.50 41.71 3.66
417 418 2.515979 CCATGCCATGCCATGCCAT 61.516 57.895 11.13 0.00 40.92 4.40
418 419 3.157949 CCATGCCATGCCATGCCA 61.158 61.111 11.13 0.00 40.92 4.92
419 420 4.619227 GCCATGCCATGCCATGCC 62.619 66.667 11.13 0.00 40.92 4.40
420 421 3.177194 ATGCCATGCCATGCCATGC 62.177 57.895 11.13 7.49 40.92 4.06
421 422 1.301637 CATGCCATGCCATGCCATG 60.302 57.895 13.50 13.50 41.71 3.66
422 423 3.147132 CATGCCATGCCATGCCAT 58.853 55.556 3.39 0.00 36.52 4.40
431 432 2.897207 CCCAAGGTGCATGCCATG 59.103 61.111 16.68 8.57 0.00 3.66
432 433 3.078836 GCCCAAGGTGCATGCCAT 61.079 61.111 16.68 0.80 0.00 4.40
433 434 3.831727 AAGCCCAAGGTGCATGCCA 62.832 57.895 16.68 0.00 0.00 4.92
434 435 2.586293 AAAGCCCAAGGTGCATGCC 61.586 57.895 16.68 6.42 0.00 4.40
435 436 1.375013 CAAAGCCCAAGGTGCATGC 60.375 57.895 11.82 11.82 0.00 4.06
436 437 0.899720 ATCAAAGCCCAAGGTGCATG 59.100 50.000 0.00 0.00 0.00 4.06
437 438 1.551883 GAATCAAAGCCCAAGGTGCAT 59.448 47.619 0.00 0.00 0.00 3.96
438 439 0.968405 GAATCAAAGCCCAAGGTGCA 59.032 50.000 0.00 0.00 0.00 4.57
439 440 0.109132 CGAATCAAAGCCCAAGGTGC 60.109 55.000 0.00 0.00 0.00 5.01
440 441 0.109132 GCGAATCAAAGCCCAAGGTG 60.109 55.000 0.00 0.00 0.00 4.00
482 484 1.143889 TGCTGGTGGTGGTTTGATGTA 59.856 47.619 0.00 0.00 0.00 2.29
608 628 0.318107 CCGCAAACAAGGAAGCAGTG 60.318 55.000 0.00 0.00 0.00 3.66
610 630 1.372128 GCCGCAAACAAGGAAGCAG 60.372 57.895 0.00 0.00 0.00 4.24
616 636 4.705519 CCGCAGCCGCAAACAAGG 62.706 66.667 0.00 0.00 38.40 3.61
617 637 3.964875 ACCGCAGCCGCAAACAAG 61.965 61.111 0.00 0.00 38.40 3.16
646 667 0.914551 CGAAGATCGTGTTGGCTACG 59.085 55.000 0.00 0.00 42.56 3.51
651 672 4.092821 TCAAATAAGCGAAGATCGTGTTGG 59.907 41.667 1.45 0.00 42.81 3.77
683 704 5.632347 ACGACCAGTACAAAGTTTAATCGAG 59.368 40.000 0.00 0.00 0.00 4.04
684 705 5.403166 CACGACCAGTACAAAGTTTAATCGA 59.597 40.000 0.00 0.00 0.00 3.59
685 706 5.389098 CCACGACCAGTACAAAGTTTAATCG 60.389 44.000 0.00 0.00 0.00 3.34
686 707 5.467735 ACCACGACCAGTACAAAGTTTAATC 59.532 40.000 0.00 0.00 0.00 1.75
687 708 5.370679 ACCACGACCAGTACAAAGTTTAAT 58.629 37.500 0.00 0.00 0.00 1.40
689 710 4.405116 ACCACGACCAGTACAAAGTTTA 57.595 40.909 0.00 0.00 0.00 2.01
692 713 2.093341 ACAACCACGACCAGTACAAAGT 60.093 45.455 0.00 0.00 0.00 2.66
749 779 2.604174 CCGTGTGCTTCGACCCAAC 61.604 63.158 0.00 0.00 0.00 3.77
766 796 1.348036 AGCTGGAAAGTGTACTGGTCC 59.652 52.381 7.67 7.67 33.69 4.46
767 797 2.037251 TGAGCTGGAAAGTGTACTGGTC 59.963 50.000 0.00 0.00 0.00 4.02
779 881 0.603707 CGCCTTGTTCTGAGCTGGAA 60.604 55.000 0.00 0.00 0.00 3.53
788 890 1.598130 GTCACAGCCGCCTTGTTCT 60.598 57.895 0.00 0.00 0.00 3.01
804 906 1.804748 CTTTGGGTTCAAGGCTACGTC 59.195 52.381 0.00 0.00 33.98 4.34
828 930 3.755404 GCGTAGAGCTCGTGTGTG 58.245 61.111 8.37 0.00 44.04 3.82
839 942 6.701400 TGTATTGTATCGTACTAGTGCGTAGA 59.299 38.462 28.58 17.22 39.65 2.59
843 946 5.397534 GGTTGTATTGTATCGTACTAGTGCG 59.602 44.000 25.14 25.14 40.03 5.34
853 956 5.746721 TCTCGATTGTGGTTGTATTGTATCG 59.253 40.000 0.00 0.00 36.06 2.92
855 958 5.523916 GCTCTCGATTGTGGTTGTATTGTAT 59.476 40.000 0.00 0.00 0.00 2.29
861 964 1.621317 TGGCTCTCGATTGTGGTTGTA 59.379 47.619 0.00 0.00 0.00 2.41
862 965 0.396435 TGGCTCTCGATTGTGGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
863 966 0.798776 GTGGCTCTCGATTGTGGTTG 59.201 55.000 0.00 0.00 0.00 3.77
864 967 0.321653 GGTGGCTCTCGATTGTGGTT 60.322 55.000 0.00 0.00 0.00 3.67
865 968 1.194781 AGGTGGCTCTCGATTGTGGT 61.195 55.000 0.00 0.00 0.00 4.16
866 969 0.460987 GAGGTGGCTCTCGATTGTGG 60.461 60.000 0.00 0.00 0.00 4.17
867 970 0.534412 AGAGGTGGCTCTCGATTGTG 59.466 55.000 0.00 0.00 38.71 3.33
868 971 0.534412 CAGAGGTGGCTCTCGATTGT 59.466 55.000 0.00 0.00 38.71 2.71
869 972 0.534412 ACAGAGGTGGCTCTCGATTG 59.466 55.000 0.00 0.73 38.71 2.67
870 973 1.205893 GAACAGAGGTGGCTCTCGATT 59.794 52.381 0.00 2.76 38.71 3.34
894 997 2.912025 AAGTGCCCCGCAACTTGG 60.912 61.111 0.00 0.00 41.47 3.61
908 1011 1.400113 CGCGCATGACAAATGACAAGT 60.400 47.619 8.75 0.00 0.00 3.16
910 1013 0.590682 ACGCGCATGACAAATGACAA 59.409 45.000 5.73 0.00 0.00 3.18
911 1014 0.165727 GACGCGCATGACAAATGACA 59.834 50.000 5.73 0.00 0.00 3.58
912 1015 0.521242 GGACGCGCATGACAAATGAC 60.521 55.000 5.73 0.00 0.00 3.06
913 1016 0.952984 TGGACGCGCATGACAAATGA 60.953 50.000 5.73 0.00 0.00 2.57
914 1017 0.794229 GTGGACGCGCATGACAAATG 60.794 55.000 5.73 0.00 0.00 2.32
915 1018 0.955428 AGTGGACGCGCATGACAAAT 60.955 50.000 5.73 0.00 0.00 2.32
916 1019 1.163420 AAGTGGACGCGCATGACAAA 61.163 50.000 5.73 0.00 0.00 2.83
917 1020 1.565156 GAAGTGGACGCGCATGACAA 61.565 55.000 5.73 0.00 0.00 3.18
932 1035 0.763223 AGGTGACGAGGGGTTGAAGT 60.763 55.000 0.00 0.00 0.00 3.01
937 1040 0.544357 TCATGAGGTGACGAGGGGTT 60.544 55.000 0.00 0.00 0.00 4.11
954 1058 1.287503 GGCGCGAATGGGTTTTTCA 59.712 52.632 12.10 0.00 0.00 2.69
975 1079 1.344226 CGATCTTGTTGTCGCTGCGA 61.344 55.000 22.24 22.24 0.00 5.10
1009 1119 0.102300 TATGTGATCTCGGGTGTGCG 59.898 55.000 0.00 0.00 0.00 5.34
1017 1127 3.156753 CGCGATGTAGTATGTGATCTCG 58.843 50.000 0.00 0.00 0.00 4.04
1023 1133 1.773525 CGACACGCGATGTAGTATGTG 59.226 52.381 15.93 0.00 43.56 3.21
1028 1138 0.179197 CTCACGACACGCGATGTAGT 60.179 55.000 15.93 16.62 46.90 2.73
1030 1140 1.513373 GCTCACGACACGCGATGTA 60.513 57.895 15.93 0.00 43.56 2.29
1037 1147 3.326981 TGCAACGCTCACGACACG 61.327 61.111 0.00 0.00 43.93 4.49
1038 1148 0.937699 TAGTGCAACGCTCACGACAC 60.938 55.000 0.00 0.00 45.86 3.67
1039 1149 0.663269 CTAGTGCAACGCTCACGACA 60.663 55.000 0.00 0.00 45.86 4.35
1040 1150 1.945776 GCTAGTGCAACGCTCACGAC 61.946 60.000 0.00 0.00 45.86 4.34
1041 1151 1.733041 GCTAGTGCAACGCTCACGA 60.733 57.895 0.00 0.00 45.86 4.35
1056 1166 2.295629 CAGAGGATCGATCAAGCTGCTA 59.704 50.000 25.93 0.00 42.67 3.49
1062 1172 1.485397 CACGCAGAGGATCGATCAAG 58.515 55.000 25.93 13.22 42.67 3.02
1064 1174 1.066422 GCACGCAGAGGATCGATCA 59.934 57.895 25.93 0.00 42.67 2.92
1148 1264 2.294078 CGAGGCAGGAAAGGGACCT 61.294 63.158 0.00 0.00 38.40 3.85
1149 1265 2.269241 CGAGGCAGGAAAGGGACC 59.731 66.667 0.00 0.00 0.00 4.46
1150 1266 1.079057 GACGAGGCAGGAAAGGGAC 60.079 63.158 0.00 0.00 0.00 4.46
1151 1267 1.535444 TGACGAGGCAGGAAAGGGA 60.535 57.895 0.00 0.00 0.00 4.20
1152 1268 1.078848 CTGACGAGGCAGGAAAGGG 60.079 63.158 0.00 0.00 32.26 3.95
1159 1275 2.716017 GGTCTCCCTGACGAGGCAG 61.716 68.421 0.00 0.00 46.24 4.85
1160 1276 1.859841 TAGGTCTCCCTGACGAGGCA 61.860 60.000 0.00 0.00 46.24 4.75
1161 1277 1.076923 TAGGTCTCCCTGACGAGGC 60.077 63.158 0.00 0.00 46.24 4.70
1162 1278 1.096386 CGTAGGTCTCCCTGACGAGG 61.096 65.000 0.00 0.00 46.24 4.63
1163 1279 1.716826 GCGTAGGTCTCCCTGACGAG 61.717 65.000 11.99 0.00 46.24 4.18
1164 1280 1.748122 GCGTAGGTCTCCCTGACGA 60.748 63.158 11.99 0.00 46.24 4.20
1165 1281 2.799371 GCGTAGGTCTCCCTGACG 59.201 66.667 0.00 0.00 46.24 4.35
1166 1282 2.799371 CGCGTAGGTCTCCCTGAC 59.201 66.667 0.00 0.00 42.67 3.51
1167 1283 3.138798 GCGCGTAGGTCTCCCTGA 61.139 66.667 8.43 0.00 42.67 3.86
1168 1284 3.127352 GAGCGCGTAGGTCTCCCTG 62.127 68.421 8.43 0.00 42.67 4.45
1169 1285 2.829458 GAGCGCGTAGGTCTCCCT 60.829 66.667 8.43 0.00 45.51 4.20
1175 1291 3.461773 ATGGCAGAGCGCGTAGGT 61.462 61.111 8.43 0.00 43.84 3.08
1176 1292 2.963854 CATGGCAGAGCGCGTAGG 60.964 66.667 8.43 0.00 43.84 3.18
1177 1293 2.963854 CCATGGCAGAGCGCGTAG 60.964 66.667 8.43 0.00 43.84 3.51
1280 1441 1.226435 CACGCTCTGACGCTACCTC 60.226 63.158 0.00 0.00 36.19 3.85
1345 1518 9.797642 TTCAGTATCACCTGAATGCAATAATAT 57.202 29.630 0.00 0.00 44.39 1.28
1381 1645 0.107459 GCTTCCTCATCTCCCGCTTT 60.107 55.000 0.00 0.00 0.00 3.51
1485 1749 3.140225 CTACTCGAGGCCTTCCCGC 62.140 68.421 18.41 0.00 39.21 6.13
1488 1752 0.741915 CTCACTACTCGAGGCCTTCC 59.258 60.000 18.41 0.00 0.00 3.46
1494 1758 1.202087 CGCACTTCTCACTACTCGAGG 60.202 57.143 18.41 1.82 0.00 4.63
1518 1782 0.820871 CTTCTCTTCCTCCTCCACGG 59.179 60.000 0.00 0.00 0.00 4.94
1519 1783 1.474879 GACTTCTCTTCCTCCTCCACG 59.525 57.143 0.00 0.00 0.00 4.94
1531 1795 3.816524 CTCGCCGCCGACTTCTCT 61.817 66.667 0.00 0.00 38.82 3.10
1555 1834 2.507324 GCCTCGCTCTCGTTGTCC 60.507 66.667 0.00 0.00 36.96 4.02
1658 1937 4.832608 CCGTAAGCCCTCCCACGC 62.833 72.222 0.00 0.00 33.19 5.34
1828 2131 2.156310 CGGCGCCGATTAACTATTAACC 59.844 50.000 44.86 0.00 42.83 2.85
1849 2155 4.082733 GGAGGTTCTTGTTTCTGTAATGGC 60.083 45.833 0.00 0.00 0.00 4.40
1869 2175 3.368739 GGGTTTCATTCTTGGCAATGGAG 60.369 47.826 0.00 0.00 34.90 3.86
1900 2206 1.867233 GATGCAGCCGTTGTATACCAG 59.133 52.381 0.00 0.00 31.76 4.00
1914 2220 2.046988 TGTGCTGTCCGGATGCAG 60.047 61.111 27.78 22.25 37.39 4.41
1915 2221 2.046988 CTGTGCTGTCCGGATGCA 60.047 61.111 24.82 24.82 0.00 3.96
1916 2222 2.578163 TAGCTGTGCTGTCCGGATGC 62.578 60.000 20.92 20.92 40.10 3.91
1917 2223 0.807667 GTAGCTGTGCTGTCCGGATG 60.808 60.000 7.81 5.08 40.10 3.51
1920 2226 0.391661 ATTGTAGCTGTGCTGTCCGG 60.392 55.000 0.00 0.00 40.10 5.14
1921 2227 0.723414 CATTGTAGCTGTGCTGTCCG 59.277 55.000 0.00 0.00 40.10 4.79
1922 2228 2.099141 TCATTGTAGCTGTGCTGTCC 57.901 50.000 0.00 0.00 40.10 4.02
1923 2229 2.807967 TGTTCATTGTAGCTGTGCTGTC 59.192 45.455 0.00 0.00 40.10 3.51
1924 2230 2.810274 CTGTTCATTGTAGCTGTGCTGT 59.190 45.455 0.00 0.00 40.10 4.40
1925 2231 3.069289 TCTGTTCATTGTAGCTGTGCTG 58.931 45.455 0.00 0.00 40.10 4.41
1930 2236 9.462174 TTGTTTATTTTCTGTTCATTGTAGCTG 57.538 29.630 0.00 0.00 0.00 4.24
1941 2247 8.769891 CGCCCTTTTATTTGTTTATTTTCTGTT 58.230 29.630 0.00 0.00 0.00 3.16
1942 2248 7.929245 ACGCCCTTTTATTTGTTTATTTTCTGT 59.071 29.630 0.00 0.00 0.00 3.41
1943 2249 8.220434 CACGCCCTTTTATTTGTTTATTTTCTG 58.780 33.333 0.00 0.00 0.00 3.02
1944 2250 8.145122 TCACGCCCTTTTATTTGTTTATTTTCT 58.855 29.630 0.00 0.00 0.00 2.52
1945 2251 8.300495 TCACGCCCTTTTATTTGTTTATTTTC 57.700 30.769 0.00 0.00 0.00 2.29
1946 2252 8.664211 TTCACGCCCTTTTATTTGTTTATTTT 57.336 26.923 0.00 0.00 0.00 1.82
1947 2253 8.664211 TTTCACGCCCTTTTATTTGTTTATTT 57.336 26.923 0.00 0.00 0.00 1.40
1950 2256 7.490000 TCTTTTCACGCCCTTTTATTTGTTTA 58.510 30.769 0.00 0.00 0.00 2.01
1979 2285 3.671702 CGGCTGATCTGAAAGCTTTTTCC 60.672 47.826 14.05 0.96 39.46 3.13
2455 2761 3.663815 GACCTCCCTCCTGCTCCGA 62.664 68.421 0.00 0.00 0.00 4.55
2533 2839 2.979676 CAGCAACCAAGCAGCCGA 60.980 61.111 0.00 0.00 36.85 5.54
2535 2841 1.538687 AATCCAGCAACCAAGCAGCC 61.539 55.000 0.00 0.00 36.85 4.85
2536 2842 0.108945 GAATCCAGCAACCAAGCAGC 60.109 55.000 0.00 0.00 36.85 5.25
2537 2843 0.529378 GGAATCCAGCAACCAAGCAG 59.471 55.000 0.00 0.00 36.85 4.24
2538 2844 0.178967 TGGAATCCAGCAACCAAGCA 60.179 50.000 0.00 0.00 36.85 3.91
2539 2845 0.968405 TTGGAATCCAGCAACCAAGC 59.032 50.000 0.86 0.00 37.46 4.01
2541 2847 1.133199 ACCTTGGAATCCAGCAACCAA 60.133 47.619 0.86 0.00 39.60 3.67
2542 2848 0.482446 ACCTTGGAATCCAGCAACCA 59.518 50.000 0.86 0.00 33.81 3.67
2545 2851 0.482446 ACCACCTTGGAATCCAGCAA 59.518 50.000 0.86 0.00 40.96 3.91
2550 2856 4.081142 CCCAAAATTACCACCTTGGAATCC 60.081 45.833 5.99 0.00 40.96 3.01
2605 2911 1.302192 TAAACCAGAGCACCACCGC 60.302 57.895 0.00 0.00 0.00 5.68
2606 2912 0.953960 GGTAAACCAGAGCACCACCG 60.954 60.000 0.00 0.00 35.64 4.94
2607 2913 0.400594 AGGTAAACCAGAGCACCACC 59.599 55.000 1.26 0.00 38.89 4.61
2608 2914 1.880027 CAAGGTAAACCAGAGCACCAC 59.120 52.381 1.26 0.00 38.89 4.16
2609 2915 1.202879 CCAAGGTAAACCAGAGCACCA 60.203 52.381 1.26 0.00 38.89 4.17
2670 2990 0.674895 AGCAAGAGTGGATTCGGCAC 60.675 55.000 0.00 0.00 0.00 5.01
2680 3000 1.537202 CCCTTTCGGAAAGCAAGAGTG 59.463 52.381 22.13 8.80 37.18 3.51
2875 3207 4.735132 TACTGTGCGCCGTCTGCC 62.735 66.667 4.18 0.00 36.24 4.85
2876 3208 2.730672 CTTACTGTGCGCCGTCTGC 61.731 63.158 4.18 0.00 0.00 4.26
2877 3209 1.073216 CTCTTACTGTGCGCCGTCTG 61.073 60.000 4.18 2.27 0.00 3.51
2878 3210 1.213013 CTCTTACTGTGCGCCGTCT 59.787 57.895 4.18 0.00 0.00 4.18
2879 3211 2.445438 GCTCTTACTGTGCGCCGTC 61.445 63.158 4.18 0.00 0.00 4.79
2880 3212 2.432628 GCTCTTACTGTGCGCCGT 60.433 61.111 4.18 1.58 0.00 5.68
2885 3217 1.344942 CGTGGACGCTCTTACTGTGC 61.345 60.000 0.00 0.00 0.00 4.57
2886 3218 0.732880 CCGTGGACGCTCTTACTGTG 60.733 60.000 0.00 0.00 38.18 3.66
2887 3219 1.585006 CCGTGGACGCTCTTACTGT 59.415 57.895 0.00 0.00 38.18 3.55
2888 3220 1.805945 GCCGTGGACGCTCTTACTG 60.806 63.158 0.00 0.00 38.18 2.74
2889 3221 2.572284 GCCGTGGACGCTCTTACT 59.428 61.111 0.00 0.00 38.18 2.24
2890 3222 2.508663 GGCCGTGGACGCTCTTAC 60.509 66.667 0.00 0.00 38.18 2.34
2891 3223 2.992689 TGGCCGTGGACGCTCTTA 60.993 61.111 0.00 0.00 38.18 2.10
2892 3224 4.681978 GTGGCCGTGGACGCTCTT 62.682 66.667 0.00 0.00 38.18 2.85
2897 3229 4.953868 TGTTCGTGGCCGTGGACG 62.954 66.667 7.00 7.00 36.91 4.79
2898 3230 3.041940 CTGTTCGTGGCCGTGGAC 61.042 66.667 0.00 0.00 35.01 4.02
2899 3231 4.980805 GCTGTTCGTGGCCGTGGA 62.981 66.667 0.00 0.00 35.01 4.02
2906 3238 3.853330 CATCGGCGCTGTTCGTGG 61.853 66.667 17.37 0.00 41.07 4.94
2907 3239 3.853330 CCATCGGCGCTGTTCGTG 61.853 66.667 17.37 10.84 41.07 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.