>input_sequence_64717
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---------------------------------------------------------------------CCATTTATACG
CACACCCGAGATCACATACTACATCGCGTGTCGTGAGCGTTGCACTAGCAGCTTGATCGATCCTCTGCGTGCAGTTAGCA
ATGCCTTGCCTGGCGCACGAGCACCATCCCAG------GCTCCCCGCCGCTAACCACTGCAGCAGGTCCCTTTCCTGCCT
CGTCAGGGAGACCTACGCGCTCTGCCATGGCCCCTGCCTC---------------------------------------G
GCATCCCCGCCGCCGGGTGGAGCTCCGGCGACGACGACAGCGAGGAGGACGAC------CGCGCCATGCTCGACACGAAA
GAGGTAGCGTCAGAGCGTGCTC------TGTTCTTGACCCATTCATGTGAGCACG------GCACATCCGTGTAACTATA
T-------------------------------------------------------------------------------
-TAT----TGCATT-------CAGGTGATACTGAACGAGATGAGAAAGCGGGAGATGAGGAAGCGGCCGTCGAGCTGCGG
CGTGGGCTCGCCGACTCTGTCGGGCGCCTTCGCGTGGTCCTTCACTCCGCTCCACCCGAGAAGCGTTCGCGGGAAGGCCT
CGAGTAGTGAGAAGTGCGTCGCCGTGGAGGAGGAAGAGAAGTCG---GCGGCGAGT------------GACGGGGACAAC
GAGAGCGAGGCGTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCAGGGCAGCGACCGTGGCGTCGTCGACGGA
CATGGACCCGCCTGCGGCGTGGGAGGGCTTACGGGGCTGCGAGGGGTGGCCGTTCGGGCTGTGCCG--------------
----------CCGCTGCCCAGCACGCCGGCCGACTCGTGGCAATGGCGCAAGCGGAGCAGCAGCAGCAGCAACCTCGCCG
TCAGGCCTGACCACAGCCCGGCTCCGGCTTACAGCTTAAAGATCACTACCGGT---TAATAGTTAATCGGCGCCGCCATT
ACAGAAACAAGAACCTCCATTGCCAAGAATGAAACCCCCAAACTGCTGGTATACAACGGCTGCATCCGGACAGCACAGCT
ACAATGAACAGAAA------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G240800
AAACCTAATCCGCCGTTAACGGCAAGTCACTCACCTGTAACATGACTATGTGCGTGTACCCGGTCACACTTGTCATCTTT
TTTTTATTTGGACCGTAGTGTACGTTGTATTTTGTTGCGTATACAGCTCAACCTGTCTCTTCACACCGATCCATTTGTTA
CCACACGAACCTAAGCTAAGGTCCTGTTTGGTTCCAAATAAGTCATTAACTTATAAGATGGAAAGATGTGGTCAGATAAT
TTATAAGTCAGGTGAGAACCAGACGGGCAATTTATAAATCATGTGACTTATAAATCAGGTGATTTATTGGAACCAAACAT
GCCCTAAGCATTTCGTTTTCACGACCGCATTCCCACCGCACCTGCACCTGCATCTGCGTGCGCCGGCATGGATGGCAAAA
GACATCTCTACCCGCGCATGGCATGGCATGGCATGGCATGCACCTTGGGCTTTGATTCGCA-CCACGGCCCTGTCCCGAA
AGCTACATCAAACCACCACCAGCAATGTTGTCTTGCATCTTCTTCTTTATTCG---------------ATCCTTCCGAAG
AGAGCA---TTTTTGCTTCCGAATCATTTCCCGCTATGATCTTGCACGACAAGATTGCCTGCAAGCTCACTGCTTCC-TT
GTTTGCGGCTGCGGTGCTCCCGGCCACGTAGCCAACACGATCTTCGCTTATTTGAACCTCGCGCTCGATTAAA------C
TTTGTACTGGTCGTGGTTGTGCTGCTTACGCCTTGACGA---TCAAACTTCCGTCCTTGTTGGGTCGAAGCACACGG---
------------------------------------------------------------------ACC---AGTACACT
TTCCAGCTCAGAACAAGGCGGCTGTGACGTAGCCTTGAACCCAAAGGATCACAC-ACGAGCTCTACGCACTAGTACGATA
CAATACAACCACAATCGAGAGCCACCTCTGTTCCGTCCAAGTTGCGGGGCACTTGTCATTTGTCATGCGCGTCCACTTCA
ACCCCT-CGTCACCTCATGAAAAACCCATTCGCGCCGGT------CGCAGCGACAACAAGATCGCTCCCCCATTTATACG
CACACCCGAGATCACATACTACATCGCGTGTCGTGAGCGTTGCACTAGCAGCTTGATCGATCCTCTGCGTGCAGTTAGCA
ATGCCTTGCCTGGCGCACGAGCACCATCCCAG------GCTCCCCGCCGCTAACCACTGCAGCAGGTCCCTTTCCTGCCT
CGTCAGGGAGACCTACGCGCTCTGCCATGGCCCCTGCCTC---------------------------------------G
GCATCCCCGCCGCCGGGTGGAGCTCCGGCGACGACGACAGCGAGGAGGACGAC------CGCGCCATGCTCGACACGAAA
GAGGTAGCGTCAGAGCGTGCTC------TGTTCTTGACCCATTCATGTGAGCACG------GCACATCCGTGTAACTATA
T-------------------------------------------------------------------------------
-TAT----TGCATT-------CAGGTGATACTGAACGAGATGAGAAAGCGGGAGATGAGGAAGCGGCCGTCGAGCTGCGG
CGTGGGCTCGCCGACTCTGTCGGGCGCCTTCGCGTGGTCCTTCACTCCGCTCCACCCGAGAAGCGTTCGCGGGAAGGCCT
CGAGTAGTGAGAAGTGCGTCGCCGTGGAGGAGGAAGAGAAGTCG---GCGGCGAGT------------GACGGGGACAAC
GAGAGCGAGGCGTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCAGGGCAGCGACCGTGGCGTCGTCGACGGA
CATGGACCCGCCTGCGGCGTGGGAGGGCTTACGGGGCTGCGAGGGGTGGCCGTTCGGGCTGTGCCG--------------
----------CCGCTGCCCAGCACGCCGGCCGACTCGTGGCAATGGCGCAAGCGGAGCAGCAGCAGCAGCAACCTCGCCG
TCAGGCCTGACCACAGCCCGGCTCCGGCTTACAGCTTAAAGATCACTACCGGT---TAATAGTTAATCGGCGCCGCCATT
ACAGAAACAAGAACCTCCATTGCCAAGAATGAAACCCCCAAACTGCTGGTATACAACGGCTGCATCCGGACAGCACAGCT
ACAATGAACAGAAAATAAACAAATAAAAGGGCGTGAAAAGAACTGGAAAAAGCTTTCAGATCAGCCGCCGCCCGGCGTCG
GCGCCGGCGTCGTCGCGGCGGCCGAAGAGGAGGGCGGCAAAGCTGGCGGCGGCGCAGACGGCGGCGACGGCGTTGCCCTC
GCAGAGCAGCACGCGGAGCGCGAGCCGCGCGATGTCGGCCGTGGCGCGGCGCGCCTCGGCGACCAGCGACCGCCGGGGCT
TGCCCGCGAACGCCAGCAGCACGAGCACGGTGATCCAGGTCACCAGCATGGCGGGCGCGGCGACGGCCAGCGCGGCGCCC
ATGGAGAGCAGGCCGAAGACGGCGCCGTACATGACGGATGCGTAGAGCGCGGCGGGCCACGCGGCCGGGTGCGCCGCCGA
GCCCGCGGCCGCGGCGTAGTACCAGGCGCGCACGGACGCCAGCAGGCTCCAGGAGGAGGAGAGCAGCGCGGCGTAGACGG
CGAGGAAGAGCGCCGCCCAGGTGCGGCGCCTGCTCATGGCTCGGAGCAGGAGGGAGGTCCAGGGGGGCCACGACGGCGGG
CCCGGCTCGGCGGCCTCCTGATCCGCCATAGACGGGGCTCGGCTGCTTGGTTGCTGGATTCCAAGGTGGTAATTTTGGGG
GCGGGGGGTTCTGGCTGCGGCTGCGGGCGGGCGGTGGTGCTC-----TGGTTTACCTTGGTTGCTTTGCTGCTGGGTGAA
GGCACGGCAGGGA---------TGCCCGAGTGCCGAATCCACTCTTGCTTTCCGAAAGGGGCTCATCCCCTTTGTCCTCT
TTTTTATTTTTCATTC--------TAGATTAGAGTAGACTAGAGAGTGGAAAGTGCTGGGAGTTGGGCTGATTCAGGCCA
GCTCGACGTGCGTCGG----CGTCGGCGTCGGGCTGAGGCCAGCTGGTCCGGCACGGAAGCCTCCCGCCGGCGACAACGC
ACGCACGGCAGACGGCGCACAGTAAGAGCGTCCACGGCCACGAACAGCGCCGATGGCCTCCCGTTTGGCCTGTCGGACAA
>chr5B_1
AAACCTAACCCGCCGTTAACGGCAAGTCACTCACCCGTAACATGACTATGTGCGTGTACCCGGTCGCACTTGTCACCCGT
AACAGTCT------GTAGTGTACGTTGTATTTTGTCGCGTATACAGCTCGACCTGTCTCTTCACACCGACCGATTCGTTA
CCGCAGGAAG----------------------------------------------------------------------
--------------------------------------------------------------------------------
---CTAAGCATTTCGTTTTCACGACCGCGTTCCCACCGCACCTGCACCTGCATCGGCGTGT-------------------
-----------------------------------------ACCTTGGGCTTTGATTCTCCCCCACGGCCCTGTCCCGAA
AGCAACATCAAACCACCACCAGCAATGTTGTCTTGCATCTTCTTCTTTATTCGCCTTAA--TTTTTTGATCCTTTTGAAG
AGAACATTTTTTTTGCTTCCGAATCATTTCCCGCTATGATCTTGCACGACAAGATTGCCTACAAGCTTAGTGCTTTTGGT
GTTTGTGGCTTCGGTGCTCCCGGCCATGTAGTCAACACGATCTTCGCTTATTTGAACCTCGCGTGGATTAAACAACAGGC
TTTGTACTGGTCGCGGTTGTGCTGCTTACACTTTGACGATGATGAAACTTCCGTCCTTCTTGGGTAGAAGCACACTAACT
AACACG-------TTTTCCCCCCGAGTAACACGACAGGATCGGAAGTGGAGCTCGGCGCCGCAAATACC---AGTACACT
GTCCAGCTC-GAACAAGGCGGCTGTTACGTAGCCTTGAACCCAAAGGATTTGTATACAAACCCTAGGCACTAGTAGGGTA
CAAACAC------ATCGAGAGCCACCTCTGTTCCGTTCAAGTTGCGGGGCGCC-------TGTCATGCGCGTTCGCTTCG
ACCCCTACGCCACCTCAAGAAAAACCCATTCGCGCCGGCCCTGGCCACAGCGACAACAAGATCGCTCCCCCATTTATAGG
CACACCAGAGATGACATGCCACATCG-----CGTGAGCGTTGCACGAGCAGATCGATCGATCGATCAACCGC-GTGAGCA
ATGCCTTGCGTGGCGCACGAGTGCCATCCCAG------GCTCCCCGCCGCAAACCACTGCAGGTCCCTCT----------
--------------------------------CCTGCCTCGTCAGGGAGACCTACGCGCACTGCCATGCCCCCTGCCTCG
GCATCCCCGCCGCCGGGTCGAGCTCCGGCGACGACGACAGCGAGGAGGACGAC------GGCGCCATGCTCGACACGAAA
CAGGTGACGGCCGAGCGTGCTC------TGTTCTTGACCCATTTATGTGAGCATG------GCGCATACGTGTAACCCCT
CCGTTCCAAAATAGATGACTCAACTTTGTACTAAAGTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTAGT
ATAT----TGCATT-------CAGGTGATACTGAACGAGATGAGGAGCCGGGAGATGAGGAAGCGGTCGTCGAGGTCTAG
CGTGGACTCGCCGACTCTGTCGGGCACCTTCGCGTGGTCGTTCACTGCGCTCGACCCAACAAGCTCTATCGAGAAGGTCT
CGACTACT---------------------GAGGAGGAGAAGGAT---GCGGCGAGT------------GACGGTGACAAC
GAGAGCGAGGCGTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTCGCATCATCAACGGA
TATGGACCTACCGGCGACGTGGGAGGGCTTACGGGACTGCAAGGGGTGGCCGTTCGGGCTGTGCCGTCGCCCCGCCGTGC
CGCCGCTCGGCCGCTGGCCAGCACGCCGACCGACTCGTGGCAATGGCGCAAGCGGAGCAGTAGTAGCAGCAGCCTAGCCG
TCAGGCCTGACCACAGCCCGGCTCCGGCTTACAGCTTAAAGATCACTACCAGTTAGTAATAGTTAATCGGCGCCACCATT
ACAGAAACAAGAACTTCCATTACCTAGAATGAAACCCCCAAACTGTTGGTATACAGACTACAAATGAAATTAGCAACAG-
-------------AAGAGACAAATAAAAGGGCGTGAAAAGAACTAGAAAATC--TTCAGATCAGCCGCCGCT--------
----CGGCGTCGTCGCGGCGGCCGAAGAGGAGGGCGGCGAAGCTGGCGACGGCGCAGACCGCGGCGACGGCGTTGCCCTC
GCACAGCAGCACGCGGAGCGCGAGCCGCGCGATGTCGGCCGTGGCGCGGCGCGCCTCGGCGACCAGCGACCGCCGGGGCT
TCCCCGCGAACGCCAGCAGCACGAGCACGGTGATCCACGTCACCAGCATGGCGGGCGCGGCGACGGCCAGCGCGGCGCCC
ATGGAGAGCAGGCCGAAGACGGCGCCGTACATGACGGAGGCGTAGAGCGCGGCGGGCCACGCGGCGGCCGCCCCCGCCGA
G---GCGGCCGCGGCGTAGTACCAGACGCGCACGGACGCCAGCAGGCTCCAGGAGGAGGAGAGCAGCGCGGCGTAGACGG
CGAGGAAGAGCGCCGCCCAGGTGCGGCGCTTGCTCATGGCCCGGAGCAGCAGGGAGGTCCAGGGGGGCCACGACGGCGGG
CCCGGCTCGGCGGCCTCCTGATCCGCCATAGATGGGGCGC--------GGATGCTCGATTCCAAGGTGGTAATTTTGGGC
-CGGGGGGTTCTGCCTGCGG--GCAGGCGGC----GGTGCTC-----TGGTTTACCTTGGTTGCTTTGCTGCTCGGTGAA
GGCACGGCAGGGATGGCAGGGATGCCCGAATGCCGAATCGACTCTTGCTTTCCGAAAGGGGCTCATCCCCTTTGTCCCGT
TT----TTTTATTTCATTCCAGATTAGACTAGACTAGACTAGAGAGTGGAAAGTGCTTGGAGTTGGGCTGATTCAGGCCA
GCTCGACGTGCATCGGGCCGCGTCGGCGTCGGGCTAAGGCCAGCTGGTCCGGCAC-------------------------
--------------------------------------------------------------------------------
>chr5D_323
CCTAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------GCATTTCGTTTTCACGACCGCATTCCCACCGCACCTGCACCGGCATCGGCGTGT-------------------
-----------------------------------------ACCTTGGGCTTTGATTCTCCCC-ACGGCCCTGTCCCGAA
AGCAACATCGAACCACCACCAGCAATGTTGTTTTGCATCTTCTTCTTCTTCTTTATTCGGCTTTATTGATCCTTCCGAAG
AGAGCATTTTTT--GCTTCCGAATCATTTCTCCCTATGATCTTGCACGACAAGATTGCCTGCACGC-----GCTTTTGTT
GTTTGTGGCTTCGGTGCTCCCAGCCATGTAGTCAACACGATCTTCGCTTATTTGAACCTCG----------------GGC
TTTGTACTGGTCATGGTTGTGCTGCTTACGCATTGAC---GATCAAACTTCCGTCCTTCCTGGATCGAAGCACACTAAGA
ACTAGACACGTTCTTTTCCCCTTGAGTAACAGGACAGGATCGGAAGTGGAGCTCGGCGCCGCAAATATTACAAGTACACT
GTCCAGCTC-GAGCAAGGCGGCTGTTACGTAGCCTTGAACCCAAAGGATTTGTATACAAACCCTAGGCACTAGTAGGGTA
CAAACAC------ATCGAGAGCCAGCTCTGTTCCGTTCAAGTTGCGGGGCGCC-------TGTCATGCGCGTCCGCATCG
ACCCC-ACGTCACCTCAAGAAAAACCCATTCGCGCCGGCCCTGGCCGCAGCGACAACAAGATCGCTCCCCCATTTATAGG
CACACCAGAGATGACATGCCACATCG-----CGTGAGCGTTGCACGAGCAGATCGATCGATCGGTCGACCGC-GTGAGCA
ATGCCTTGCGTGGCGCACGAGTGCCATCCCAG------GCTCCCCGCCGCTAACCACTGCAGGTCCCTCT----------
--------------------------------CCTGCCTC---------------------------------------G
GCACCCCCGCCGCCGGGTGGAGCTCCGGCGACGACGACCGCGAGGAGGACGA---------------GCTCGACACGAAA
CAGGTAGCGGCAGAGCATGCTC------TGTTCTTGACCCATTCATGTGCGCATG------ACGCATCCCGGCATCCG--
--------------------------------------------------------------TGTAACCGTGCTAGTAGT
ATACTGCATGCATT-------CAGGTGATACTGAACGAAATGAGGAACCGGGAGATGAGGAAGCGGTCGTCCAGGTGCAG
CGTGGACTCGCCGACTCTGTCCGGCGCCTTCGCCTGGTCCTTCACTCCGCTCCACCCGAGAAGCTCTATCGAGAAGGTCT
CCTGTACT---------------------GAGGAGGAGAAGGAG---GCGGCGAGT------------GACAGTGACAAC
GAGAGCGAGGCGTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTGGCTTCGTCGACGGA
CATGGACCCGCCGGCGACGTGGGAGGGCTTACGGGGCTGCGAGGGGTGGCCGTTCGGGCTGTGCCGTCGCCCCGCCGTGC
CGCCGCT--------GCCCAGCACGCCGGCCGACTCTTGGAAATGGCGCAAGCGGAGCAGA------AAC---CTCGCCG
AA---------CACAGCCCGGCTCCGGCTTACAGCTTAAAGATCACTACCAGTTA-----AGTTAATCGGCGACACCATT
ACAGAAACAAGAACTTCCATTGCCAAGAATGAAACCCCCAAACTGTTGGTATGCAGACTACAAATGAAATTAGCAACAG-
-------------AAGAAACAAATAAAAGGGCGTGAAAGGAACTCG-AAAAGCTTTCAGATCAGCCGCCGCTCGGCGT--
----CGGCGTCGTCGCGGCGGCCGAAGAGGAGGGCGGCGAAGCTGGCGGCGGCGCAGACGGCGGCGACGGCGTTGCCCTC
GCAGAGCAGCACGCGGAGCGCGAGCCGCGCGATGTCGGCCGTGGCGCGGCGCGCCTCGGCGACCAGCGACCGCCGGGGCT
TGCCCGCGAACGCCAGCAGCACGAGCACGGTGATCCAGGTGACCAGCATGGCGGGCGCGGCGACGGCCAGCGCGGCGCCC
ATGGAGAGCAGCCCGAAGACGGCGCCGTACATGACGGAGGCGTAGAGCGCGGCGGGCCACGCGGCCGGGTGCGCCGCCGA
GCCCGCGGCCGCGGCGTAGTACCAGGCGCGCACGGACGCCAGCAGGCTCCAGGAGGAGGATAGCAGCGCGGCGTAGACGG
CGAGGAAGAGCGCCGCCCAGGTGCGGCGCTTGCTCATGGCCCGGAGCAGGAGGGAGGTCCAGGGGGGCCACGACGGCGGG
CCCGGCTCGGCGGCCTCCTGATCCGCCATAGATGGGGCGC--------GGATGCTCGATTCCAAGGTGGTAATTTTGGGG
GCGGGGGGTTCTGCCTGCGGCTGCGGGCGGC----GGTGCTCTGGTTTGGTTTACCTTGGTTGCTTTGCTGCTGGGTGAA
GGCACGGCAGGGA---------TGCCCGAATGCCGAATCGACTCTTGCTTTCCGAAAGGGGCTCATCCCCTTTGTCCTTT
TT----TTTTTCATTC--------TAGATTAGAGTAGACTAGAGAGTGGAAAGTGCTGGGAGCTGGGCTGATTCAGGCCA
GCTCGACGTGCATCGGGCCGCGTCGGCGTCGGGCTAGGGCCAGCTGGTCCGGCACGGAAGCCTCACGCCGGCGACAACGC
-----------------------------------------------CGCCGATGGCCTCCCGTTTGGCCTGTCGGAC--
>chr5A_1088
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----------------------------------------------------------------------------AGCA
ATGCCTTGCTTGGCGCACGACCGCCACCCCAGCCCCAGGCCCCCGGCCGCTAACCACTGCAAGTCCCTCT----------
--------------------------------CCTGCCTCATCCGGGAGACCTACGCGCACTGCCATGTCCCCTGCATCG
GGATCGCCGGCGCCGGGTGGAGCTCCGGCGACGAC---AG------CGACGACGACGATGATGACATGCTCGACACGAAA
CAGGTAGCGGCAGAGCATGCTACAGTCATGTTCTTGATCGATTTACTTGGGGAGG------TCATGAGTAACAGCA----
-------------------------------------------------------------------------GAGTG--
ATATGTCTTGCGTTGATGGTGCAGGTGATACTCAACGAGATTAGGAACCGGCAGCTGAGGAAGGA---GTCGAGGTGCAG
CGTGGACTCGGCGGCCCTGTCGGGCGCCTTCATCTGGTTCTTCACCCCGCTCGACCCGAGAAGCGTTCTGGAGAAGGTCT
CGAGCCCTGAGAAGCACGTCGTGGCGGG---GGAGGAGAAGGGA---GAGGCGGAGGCGGGCAGCGACGCCGGCGACGTG
GAGAGCGAGGCGTACTTCTCGGTGAAGAGCTTCTTCACCCGCAGCACGAGCCGGGCGGCGACCGTGGCGTCGCTGACGGA
CATGGACCCGCCGGCGACGTGGGACGGCTTCCGGGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCGCCCCGCCGTGC
CGCCGCT--------GCCCAGCACGCCGGCCGACTCGTGGAAGTGGCGCAAGCAGAGCAGCGGCCGCAGC----------
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>chr5A_1088
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----------------------------------------------------------------------------AGCG
ATGCCTTGCTTGGCGCACGAGTACCACCCCAGGC------TCCCGGCCGCTAACCACTGCAAGTCCCTCT----------
--------------------------------CCTGCCTCATCCGGGAGACCTACGCCCACTGCCATGTCCCCTGCCTCA
GGACCCCCGGCGCCCGGTGGAGCTCCGACGACGAC---AG------CGACGACGAC---GACGACATGCTCGACACGAAA
CAGGTGGCGGCAGAGCATGCTACAGTCATGTTCTTGCTCGATTCACTTG---AGG------TCATAAGTAACAGCA----
-------------------------------------------------------------------------GAGTA--
AGATGCCTTGCGTTGATGCTGCAGGTGATACTCAACGAGATGAGGAGGCGGCAGCTGAGGAAGGA---GTCGCGGTGCGG
CGCGGGCTCGCCGACTCTGTCCAGCGCCTTCGTGTGGTCCTTCACCCCGCTC------------GTTCTGGAGAAGGTGT
CCAGCCCTGAGAAGTTCGTCGTGGTGGAAGGGGGGCAGAAGGGA---GAGGCGGAGGCGGGCAGCGACGACGGCGACGCC
GAGAGCGAGGCCTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTGGCGTCGTTGACGGA
CATGGGCCCGCCGGCGACGTGGGAGGGCTTCCGGGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCGCCCCGCCGTGC
CGCCGCT--------GCCCAGCACGCCGGCCGACTCCTGGCAATGGCGAAAGCAGAGCAGCGGCCGCAAC---CTCGCCG
TC------------------------------------------------------------------------------
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>chr5D_1088
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----------------------------------------------------------------------------AGCG
ATGCCTTGCTTGGCGCACGAGTACCACCCCAGGC------TCCCGGCCACTAACCACTGCAAGTCCCTCT----------
--------------------------------CCTGCCTCATCCGGGAGACCTACGCGCACTGCCATGTCCCCTGCCTCG
GGACCCCCGGCGCCCGGTGGAGCTCCGACGACGAC---AG------CGACGAC------GATGACATGCTCGACACGAAA
CAGGTAACGGC-GAGCATGCTATGGTCATGTTCTTGCTCAATTCACTTG---AGG------TCAGAAGTAACAGCA----
-------------------------------------------------------------------------GAGTA--
AGATGCCTTGCGTTGATGCTGTAGGTGATACTCAACGAGATGAGGAGGCGGCAGCTGAAGAAGGA---GTCGAGGTGCAG
CGTGGGCTCGCCGACTCTGTCCAGCGCCTTCGTGTGGTCCTTCACCCCGCTC------------ATTCTGGAGAAGGTGT
CCAGCCCTGAGAAGTTCGTCGTGGTGGAAGGGGAGCAGAAGGAA---GAGGCCGAGGCGGGAAGCGACGACGGCGACATC
GAGAGCGAGGCGTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTGGCGTCGTTGACGGA
CATGGGCCCGCCGGCGACGTGGGAGGGCTTCCGGGACTGCGAGGGCTGGCCGTTCGGGCTGTGCCGCCGCCCCGCCGTGC
CGCCGCT--------GCCCAGCACGCCGGCCGACTCCTGGCAGTGGCGCAAGCAGAGCAGCGGCCGCAAC---CTCGCCG
T-------------------------------------------------------------------------------
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>chr5D_1088
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----------------------------------------------------------------------------AGCA
ATGCCTTGCTTGGCGCACGGCCGCCACCCCAGGCCT------CCGGCCACTAACCACTGCAAGTCTCTTA----------
--------------------------------CCTGCCTCATCAGGGAGACCTACGCGCACTGCCATGTCCCCTGCATCG
GGATCGCCGGCGCCGGGTGGAGCTCCGGCGACGAC---AGCGAGGACGACGAC------GACGACATGCTCAACACGAAA
CAGGTAACGGCAGAGCGTGATATAGTCATGTTCTTGCTCAATTTACTTG---AGGTTGAGGTCATGAGTAACAGCA----
-------------------------------------------------------------------------GAGTAGT
ATATGTCTGGCGTTGATGCTGCAGGTGATACTCAACGAGATTAGGAACCGGCAGCTGAGGAAGGA---GTCGAGGTGCAG
CGGGGACTCGCCGGCTCTGTCGGGCGCCTTCATCTGGTTCTTCACCCCGCTCGACCCGAGAAGCGTTCTGGAGAAGGTCT
CGAGCCCTGAGAAGCACGTCGTGGCGGGGGAGGAGAAGGGAGAGGCGGAGGCGGAGGCGGGCAGCGACGCCGGCGACGTG
GAGAGCGAGGCCTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTGGCGTCGTTGACGGA
CATGGACCCGCCGGCGACGTGGGATGGCTTCCGGGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCGCCCCGCCGTGC
CGCCGCT--------GCCCAGCACGCCGGCCGACTCCTGGAAATGGCGGAAGCAGAGCAGCGGTCGCAGC---CTCGCCG
CGAGGCC-------------------------------------------------------------------------
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>chr5B_1088
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----------------------------------------------------------------------------AGCA
ATGCCTTGCTTGGCGCACGACCGCCACCCCAGGCC------CCCGGCCACTAACCACTGCAAGTCCCTCT----------
--------------------------------CCTGCCTCATCAGGGAGACGTACGCGCACTGCCATGTCCCCTGCATCG
GGATCGCCGGCGCCGGGTGGAGCTCCGGCGACGAC---AGCGACGACGACGAC------GATGACATGCTCGATACCAAA
CAGGTAACGGCAGAGCATGATATAGTCATGTTCTTGATCGATTTACTTGGG------GAGGTCATGAGTAACAGCA----
-------------------------------------------------------------------------GAGTAAT
ATATATCTTGCGTTGATGCTGCAGGTGATACTCAACGAGATTAGGAACCGGCAGCTGAGGAAGGA---GTCGAGGTGCAG
CGCGGACTCGCCGGCTCTGTCCAGCGCCTTCATCTGGTTCTTCACCCCGCTCGATCCGAGGAGCGTTCTGGAGAAGGTCT
CGAGCCCTGAGAAGTGCATCGTGGCGGGGGAGGAGAAGGAAGAGGCGGAGGGGGAGGCGGGCAGCGACGCCGGCGACGTG
GAGAGCGAGGCGTACTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTGGCGTCGCTGACGGA
CATGGACCCGCCGGCGACGTGGGATGGCTTCCGGGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCGCCCCGCCGTGC
CGCCGCT--------GCCCAGCACACCGGCCGACTCGTGGAAATGGCGCAAGCAGAGCAGCGGCCGCAGC----------
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>chr5B_1088
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----------------------------------------------------------------------------AGCG
ATGCCTTGCTTGGCGCACCACTACCACCCCAAGC------TCCCGGCCACTAACCACTGCAAGTCTCTCT----------
--------------------------------CCTGCCTCATCCGGGAGACCTACGCACACTGCCATGTCCCCTGCCTCA
GGATCCCCGGCGCCGGGTGGAGCTCCGACGATGAC---ACA------GACGAC------GAGGACGCGCTCGACACCAAA
CAGGTAACAGCAGAGCATGCTATAGTCATGTTCATGCTGAGTTCACTTG---AGATTGAGGTCATGAGTAACAGGA----
-------------------------------------------------------------------------GAGTA--
AGATGTCTTGCGTTGATGCTGCAGGTGATACTCAACGAGATGAGGAGGCGGCAGCTGAAGAAGGA---GTCGCGGTGCAG
CGCGGGCTCTCCGACTCTGTCGAGCGCCTTCATCTGGTCGTTCACCCCGCTCGATCCGAGAAGCGTTCTGGAGAAGGTCT
CGAGCCCTGAGCAGTTCGTCGTGGTGGAAGGGGAGCAGAAGGAA---GAGGCGGAGGCGGGCAGCGACAACGGCGACGCC
GAGAGCGACGCGTTCTTCTCGGTGAAGAGCTTCTTCACGCGCAGCACGAGCCGGGCGGCGACCGTGGCGTCGTTGACGGA
CATGGGCCCGCCGGCGACGTGGGAGGGCTTCCAGCACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCGC----------
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>SNPs
--------S--------------------------S-----------------------------S---------S-SS-
SSSSSSS-SSSSSS---------------------S-------------S-------------------S-S---S----
--S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---------------------------------------------------S-----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-S-------------------
---S----------------------------------------------------------------------------
-------------------------------------------------------------------S-S-----SS---
-----S----S---------------S----S-------------------------------SSSSS-S--S-------
-------------------------------S--------------------------S----------------SS---
--------------------------------------------------------------------------------
S--------S---------------S-----------------------SSSSS---S-S-S---S---------S-S--
---SSSSSSSSSS-----------------------S-------------S-SSSSSSSS--------------S----S
-----------------S--------------------S---------------------------------------S-
------S-----S----S-S------SSSSS--------------S-----S-S--------SSSS-SSS--S--S----
---------S----------------------------------------------------SSSSSS-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------
-----------------------------------------------------------S--------------------
S--------S-------------------------------------------S----------------------SSSS
S-------------------------------------------------------------------------------
--------------------------------------------S---------------------S-------S-----
--------------------------------------------------------------------S--S-----S--
------S--------------SS-----------S------SS------------------------------S------
---------------------------------------------------S----S-----------------------
------------S---S---------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------S-----------------------S-----
--------------S------------------------------S---------SSSSSSSS--SSSSSS----SSSSS
SSSSSSSSSSSSS--S----------------------------S--------------------------S------SS
SSSS----------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-----------------------------S----------S---------------------------------------
--------------------------------S-----S-SSSSSSSS--S----S------------------------
-------------S----------------SSSSS---------------------------------------------
-----------------------------S---------S--------------------------------------S-
--SSSS--------------------------------------------------------------------------
-----------S-----------------------S----------------------------S---------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SS
>forward_266
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------GTCAGGTGAGAACCAGACGG------------------------------------------------------
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>reverse_1645
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAAGCGGGAGATGAGGAAGC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>forward_1189
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGCTTGATCGATCCTCTGCG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>reverse_2842
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GCTGCTTGGTTGCTGGATTC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
