Multiple sequence alignment - TraesCS5A01G234500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G234500 chr5A 100.000 3473 0 0 1 3473 450735044 450738516 0.000000e+00 6414.0
1 TraesCS5A01G234500 chr5A 96.703 91 3 0 2 92 700213056 700212966 6.000000e-33 152.0
2 TraesCS5A01G234500 chr5A 89.256 121 10 3 1355 1475 450736278 450736395 7.770000e-32 148.0
3 TraesCS5A01G234500 chr5A 96.000 75 2 1 459 532 450708300 450708374 1.690000e-23 121.0
4 TraesCS5A01G234500 chr5A 94.118 51 2 1 3034 3084 450738039 450738088 3.720000e-10 76.8
5 TraesCS5A01G234500 chr5A 94.118 51 2 1 2996 3045 450738077 450738127 3.720000e-10 76.8
6 TraesCS5A01G234500 chr5D 94.787 2417 46 32 686 3045 350321974 350324367 0.000000e+00 3692.0
7 TraesCS5A01G234500 chr5D 95.116 430 20 1 3034 3463 350324317 350324745 0.000000e+00 676.0
8 TraesCS5A01G234500 chr5D 88.150 481 28 10 2 453 345858308 345858788 2.360000e-151 545.0
9 TraesCS5A01G234500 chr5D 89.256 121 10 3 1355 1475 350322534 350322651 7.770000e-32 148.0
10 TraesCS5A01G234500 chr5D 90.179 112 8 3 568 677 350321822 350321932 3.610000e-30 143.0
11 TraesCS5A01G234500 chr5B 93.899 2426 63 27 686 3041 411020503 411022913 0.000000e+00 3581.0
12 TraesCS5A01G234500 chr5B 89.154 461 25 9 3034 3472 411022868 411023325 5.070000e-153 551.0
13 TraesCS5A01G234500 chr5B 90.083 121 9 3 1355 1475 411021070 411021187 1.670000e-33 154.0
14 TraesCS5A01G234500 chr7D 92.341 457 30 1 2 453 124020561 124021017 0.000000e+00 645.0
15 TraesCS5A01G234500 chr4A 92.667 450 22 5 3034 3472 592453796 592454245 3.780000e-179 638.0
16 TraesCS5A01G234500 chr4A 92.444 450 23 5 3034 3472 592732109 592732558 1.760000e-177 632.0
17 TraesCS5A01G234500 chr4A 92.444 450 23 5 3034 3472 593020652 593021101 1.760000e-177 632.0
18 TraesCS5A01G234500 chr4A 91.111 450 29 5 3034 3472 591588958 591588509 1.780000e-167 599.0
19 TraesCS5A01G234500 chr4A 89.059 457 45 1 2 453 555565738 555565282 2.340000e-156 562.0
20 TraesCS5A01G234500 chr4A 92.642 299 16 3 3158 3450 254436054 254436352 3.200000e-115 425.0
21 TraesCS5A01G234500 chr4A 90.265 113 10 1 2930 3041 591589025 591588913 2.790000e-31 147.0
22 TraesCS5A01G234500 chr4A 90.265 113 10 1 2930 3041 592453729 592453841 2.790000e-31 147.0
23 TraesCS5A01G234500 chr4A 89.381 113 11 1 2930 3041 592732042 592732154 1.300000e-29 141.0
24 TraesCS5A01G234500 chr4A 89.381 113 11 1 2930 3041 593020585 593020697 1.300000e-29 141.0
25 TraesCS5A01G234500 chr4A 91.935 62 5 0 2845 2906 591589137 591589076 1.720000e-13 87.9
26 TraesCS5A01G234500 chr4A 91.935 62 5 0 2845 2906 592453617 592453678 1.720000e-13 87.9
27 TraesCS5A01G234500 chr4A 91.935 62 5 0 2845 2906 592731930 592731991 1.720000e-13 87.9
28 TraesCS5A01G234500 chr4A 91.935 62 5 0 2845 2906 593020473 593020534 1.720000e-13 87.9
29 TraesCS5A01G234500 chr1B 88.528 462 46 3 2 457 377346494 377346034 1.410000e-153 553.0
30 TraesCS5A01G234500 chr2D 88.150 481 28 13 2 453 24448265 24448745 2.360000e-151 545.0
31 TraesCS5A01G234500 chr2D 87.202 461 48 6 1 453 37641690 37641233 6.650000e-142 514.0
32 TraesCS5A01G234500 chr4D 92.188 384 25 2 75 453 344948669 344948286 3.940000e-149 538.0
33 TraesCS5A01G234500 chr6B 87.174 460 49 5 2 453 710619570 710620027 6.650000e-142 514.0
34 TraesCS5A01G234500 chr7B 87.004 454 48 6 6 451 581343177 581342727 5.170000e-138 501.0
35 TraesCS5A01G234500 chr1A 93.980 299 12 3 3158 3450 591009433 591009135 6.840000e-122 448.0
36 TraesCS5A01G234500 chr7A 93.471 291 14 2 3165 3450 104222855 104223145 8.910000e-116 427.0
37 TraesCS5A01G234500 chr6A 80.777 489 48 18 2 452 582631946 582631466 1.190000e-89 340.0
38 TraesCS5A01G234500 chr3D 79.346 489 55 17 2 452 8512850 8513330 5.630000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G234500 chr5A 450735044 450738516 3472 False 1678.900000 6414 94.373000 1 3473 4 chr5A.!!$F2 3472
1 TraesCS5A01G234500 chr5D 350321822 350324745 2923 False 1164.750000 3692 92.334500 568 3463 4 chr5D.!!$F2 2895
2 TraesCS5A01G234500 chr5B 411020503 411023325 2822 False 1428.666667 3581 91.045333 686 3472 3 chr5B.!!$F1 2786
3 TraesCS5A01G234500 chr4A 592453617 592454245 628 False 290.966667 638 91.622333 2845 3472 3 chr4A.!!$F2 627
4 TraesCS5A01G234500 chr4A 592731930 592732558 628 False 286.966667 632 91.253333 2845 3472 3 chr4A.!!$F3 627
5 TraesCS5A01G234500 chr4A 593020473 593021101 628 False 286.966667 632 91.253333 2845 3472 3 chr4A.!!$F4 627
6 TraesCS5A01G234500 chr4A 591588509 591589137 628 True 277.966667 599 91.103667 2845 3472 3 chr4A.!!$R2 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.030369 GCCACTATCCACCGTAGTCG 59.970 60.0 0.00 0.0 30.24 4.18 F
148 149 0.030369 CACTATCCACCGTAGTCGCC 59.970 60.0 0.00 0.0 35.54 5.54 F
258 259 0.030504 CTCATGCGTGCAACCAAACA 59.969 50.0 0.00 0.0 0.00 2.83 F
379 380 0.031314 CAGATGTCGCGTATGAGGCT 59.969 55.0 5.77 0.0 0.00 4.58 F
380 381 0.031314 AGATGTCGCGTATGAGGCTG 59.969 55.0 5.77 0.0 0.00 4.85 F
383 384 0.037697 TGTCGCGTATGAGGCTGTTT 60.038 50.0 5.77 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2080 0.251165 CACTACCAACCAACCCCCAG 60.251 60.000 0.0 0.0 0.0 4.45 R
2097 2179 4.422840 GCTGACTCTCCATATCATCATCG 58.577 47.826 0.0 0.0 0.0 3.84 R
2226 2308 1.500783 CCTTCCCCTTCTCAAGCCCA 61.501 60.000 0.0 0.0 0.0 5.36 R
2349 2431 0.179081 GCTTTTCCTCTATCGCCCGT 60.179 55.000 0.0 0.0 0.0 5.28 R
2358 2440 2.037385 ACCTCCTCAGCTTTTCCTCT 57.963 50.000 0.0 0.0 0.0 3.69 R
2725 2807 3.261580 CACAGCATTCACAACGAGGATA 58.738 45.455 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.118480 TTGACGATACCATGGCGC 57.882 55.556 13.04 0.00 0.00 6.53
18 19 1.880796 TTGACGATACCATGGCGCG 60.881 57.895 13.04 15.44 0.00 6.86
19 20 2.027024 GACGATACCATGGCGCGA 59.973 61.111 23.06 0.00 0.00 5.87
20 21 2.016704 GACGATACCATGGCGCGAG 61.017 63.158 23.06 10.10 0.00 5.03
32 33 2.699809 CGCGAGCACTGCATTCTC 59.300 61.111 0.00 0.00 0.00 2.87
33 34 2.806856 CGCGAGCACTGCATTCTCC 61.807 63.158 0.00 0.00 0.00 3.71
34 35 1.449246 GCGAGCACTGCATTCTCCT 60.449 57.895 3.30 0.00 0.00 3.69
35 36 1.427592 GCGAGCACTGCATTCTCCTC 61.428 60.000 3.30 0.00 0.00 3.71
36 37 0.809241 CGAGCACTGCATTCTCCTCC 60.809 60.000 3.30 0.00 0.00 4.30
37 38 0.540923 GAGCACTGCATTCTCCTCCT 59.459 55.000 3.30 0.00 0.00 3.69
38 39 0.540923 AGCACTGCATTCTCCTCCTC 59.459 55.000 3.30 0.00 0.00 3.71
39 40 0.540923 GCACTGCATTCTCCTCCTCT 59.459 55.000 0.00 0.00 0.00 3.69
40 41 1.743091 GCACTGCATTCTCCTCCTCTG 60.743 57.143 0.00 0.00 0.00 3.35
41 42 1.554160 CACTGCATTCTCCTCCTCTGT 59.446 52.381 0.00 0.00 0.00 3.41
42 43 1.830477 ACTGCATTCTCCTCCTCTGTC 59.170 52.381 0.00 0.00 0.00 3.51
43 44 1.138661 CTGCATTCTCCTCCTCTGTCC 59.861 57.143 0.00 0.00 0.00 4.02
44 45 1.198713 GCATTCTCCTCCTCTGTCCA 58.801 55.000 0.00 0.00 0.00 4.02
45 46 1.767681 GCATTCTCCTCCTCTGTCCAT 59.232 52.381 0.00 0.00 0.00 3.41
46 47 2.172293 GCATTCTCCTCCTCTGTCCATT 59.828 50.000 0.00 0.00 0.00 3.16
47 48 3.806380 CATTCTCCTCCTCTGTCCATTG 58.194 50.000 0.00 0.00 0.00 2.82
48 49 2.630889 TCTCCTCCTCTGTCCATTGT 57.369 50.000 0.00 0.00 0.00 2.71
49 50 2.461695 TCTCCTCCTCTGTCCATTGTC 58.538 52.381 0.00 0.00 0.00 3.18
50 51 2.043664 TCTCCTCCTCTGTCCATTGTCT 59.956 50.000 0.00 0.00 0.00 3.41
51 52 2.836981 CTCCTCCTCTGTCCATTGTCTT 59.163 50.000 0.00 0.00 0.00 3.01
52 53 3.251484 TCCTCCTCTGTCCATTGTCTTT 58.749 45.455 0.00 0.00 0.00 2.52
53 54 3.008375 TCCTCCTCTGTCCATTGTCTTTG 59.992 47.826 0.00 0.00 0.00 2.77
54 55 2.746362 CTCCTCTGTCCATTGTCTTTGC 59.254 50.000 0.00 0.00 0.00 3.68
55 56 1.466167 CCTCTGTCCATTGTCTTTGCG 59.534 52.381 0.00 0.00 0.00 4.85
56 57 0.874390 TCTGTCCATTGTCTTTGCGC 59.126 50.000 0.00 0.00 0.00 6.09
57 58 0.453282 CTGTCCATTGTCTTTGCGCG 60.453 55.000 0.00 0.00 0.00 6.86
58 59 0.882484 TGTCCATTGTCTTTGCGCGA 60.882 50.000 12.10 0.00 0.00 5.87
59 60 0.179215 GTCCATTGTCTTTGCGCGAG 60.179 55.000 12.10 3.17 0.00 5.03
73 74 2.125912 CGAGCACCGCAGCTAGTT 60.126 61.111 0.00 0.00 46.75 2.24
74 75 2.161486 CGAGCACCGCAGCTAGTTC 61.161 63.158 0.00 0.00 46.75 3.01
75 76 2.125912 AGCACCGCAGCTAGTTCG 60.126 61.111 0.00 0.00 44.50 3.95
76 77 3.854459 GCACCGCAGCTAGTTCGC 61.854 66.667 0.00 0.00 0.00 4.70
77 78 3.188786 CACCGCAGCTAGTTCGCC 61.189 66.667 0.00 0.00 0.00 5.54
78 79 4.796231 ACCGCAGCTAGTTCGCCG 62.796 66.667 0.00 0.00 0.00 6.46
79 80 4.492160 CCGCAGCTAGTTCGCCGA 62.492 66.667 0.00 0.00 0.00 5.54
80 81 3.248171 CGCAGCTAGTTCGCCGAC 61.248 66.667 0.00 0.00 0.00 4.79
81 82 3.248171 GCAGCTAGTTCGCCGACG 61.248 66.667 0.00 0.00 42.01 5.12
82 83 2.579787 CAGCTAGTTCGCCGACGG 60.580 66.667 10.29 10.29 40.63 4.79
83 84 3.060615 AGCTAGTTCGCCGACGGT 61.061 61.111 16.73 0.00 40.63 4.83
84 85 2.879462 GCTAGTTCGCCGACGGTG 60.879 66.667 21.48 21.48 40.63 4.94
85 86 2.564975 CTAGTTCGCCGACGGTGT 59.435 61.111 25.69 10.58 40.63 4.16
86 87 1.513586 CTAGTTCGCCGACGGTGTC 60.514 63.158 25.69 19.10 40.63 3.67
95 96 4.034258 GACGGTGTCGCTCGTCCA 62.034 66.667 13.27 0.00 46.79 4.02
96 97 4.338539 ACGGTGTCGCTCGTCCAC 62.339 66.667 0.00 6.39 40.63 4.02
102 103 3.429141 TCGCTCGTCCACGACTCC 61.429 66.667 0.00 0.00 44.22 3.85
103 104 3.733960 CGCTCGTCCACGACTCCA 61.734 66.667 0.00 0.00 44.22 3.86
104 105 2.885861 GCTCGTCCACGACTCCAT 59.114 61.111 0.00 0.00 44.22 3.41
105 106 1.517257 GCTCGTCCACGACTCCATG 60.517 63.158 0.00 0.00 44.22 3.66
106 107 1.517257 CTCGTCCACGACTCCATGC 60.517 63.158 0.00 0.00 44.22 4.06
107 108 1.938657 CTCGTCCACGACTCCATGCT 61.939 60.000 0.00 0.00 44.22 3.79
108 109 1.079819 CGTCCACGACTCCATGCTT 60.080 57.895 0.00 0.00 43.02 3.91
109 110 1.354337 CGTCCACGACTCCATGCTTG 61.354 60.000 0.00 0.00 43.02 4.01
110 111 0.320771 GTCCACGACTCCATGCTTGT 60.321 55.000 0.00 0.00 0.00 3.16
111 112 0.037326 TCCACGACTCCATGCTTGTC 60.037 55.000 0.00 0.00 0.00 3.18
112 113 0.320683 CCACGACTCCATGCTTGTCA 60.321 55.000 0.00 0.00 0.00 3.58
113 114 1.676916 CCACGACTCCATGCTTGTCAT 60.677 52.381 0.00 0.00 35.31 3.06
121 122 0.371301 CATGCTTGTCATGTCGGACG 59.629 55.000 3.34 0.00 45.79 4.79
122 123 1.361668 ATGCTTGTCATGTCGGACGC 61.362 55.000 3.34 0.00 40.72 5.19
123 124 2.740714 GCTTGTCATGTCGGACGCC 61.741 63.158 3.34 0.00 40.72 5.68
124 125 1.374125 CTTGTCATGTCGGACGCCA 60.374 57.895 3.34 0.00 40.72 5.69
125 126 1.626654 CTTGTCATGTCGGACGCCAC 61.627 60.000 3.34 0.34 40.72 5.01
126 127 2.048597 GTCATGTCGGACGCCACA 60.049 61.111 3.34 0.00 0.00 4.17
127 128 2.094659 GTCATGTCGGACGCCACAG 61.095 63.158 3.34 0.00 0.00 3.66
128 129 3.490759 CATGTCGGACGCCACAGC 61.491 66.667 3.34 0.00 0.00 4.40
129 130 4.760047 ATGTCGGACGCCACAGCC 62.760 66.667 3.34 0.00 34.57 4.85
133 134 4.063967 CGGACGCCACAGCCACTA 62.064 66.667 0.00 0.00 34.57 2.74
134 135 2.584608 GGACGCCACAGCCACTAT 59.415 61.111 0.00 0.00 34.57 2.12
135 136 1.521681 GGACGCCACAGCCACTATC 60.522 63.158 0.00 0.00 34.57 2.08
136 137 1.521681 GACGCCACAGCCACTATCC 60.522 63.158 0.00 0.00 34.57 2.59
137 138 2.238847 GACGCCACAGCCACTATCCA 62.239 60.000 0.00 0.00 34.57 3.41
138 139 1.815421 CGCCACAGCCACTATCCAC 60.815 63.158 0.00 0.00 34.57 4.02
139 140 1.452108 GCCACAGCCACTATCCACC 60.452 63.158 0.00 0.00 0.00 4.61
140 141 1.153369 CCACAGCCACTATCCACCG 60.153 63.158 0.00 0.00 0.00 4.94
141 142 1.596934 CACAGCCACTATCCACCGT 59.403 57.895 0.00 0.00 0.00 4.83
142 143 0.821517 CACAGCCACTATCCACCGTA 59.178 55.000 0.00 0.00 0.00 4.02
143 144 1.112113 ACAGCCACTATCCACCGTAG 58.888 55.000 0.00 0.00 0.00 3.51
144 145 1.112113 CAGCCACTATCCACCGTAGT 58.888 55.000 0.00 0.00 32.80 2.73
145 146 1.067212 CAGCCACTATCCACCGTAGTC 59.933 57.143 0.00 0.00 30.24 2.59
146 147 0.030369 GCCACTATCCACCGTAGTCG 59.970 60.000 0.00 0.00 30.24 4.18
147 148 0.030369 CCACTATCCACCGTAGTCGC 59.970 60.000 0.00 0.00 35.54 5.19
148 149 0.030369 CACTATCCACCGTAGTCGCC 59.970 60.000 0.00 0.00 35.54 5.54
149 150 0.394762 ACTATCCACCGTAGTCGCCA 60.395 55.000 0.00 0.00 35.54 5.69
150 151 0.959553 CTATCCACCGTAGTCGCCAT 59.040 55.000 0.00 0.00 35.54 4.40
151 152 1.340248 CTATCCACCGTAGTCGCCATT 59.660 52.381 0.00 0.00 35.54 3.16
152 153 0.179084 ATCCACCGTAGTCGCCATTG 60.179 55.000 0.00 0.00 35.54 2.82
153 154 1.079405 CCACCGTAGTCGCCATTGT 60.079 57.895 0.00 0.00 35.54 2.71
154 155 1.082117 CCACCGTAGTCGCCATTGTC 61.082 60.000 0.00 0.00 35.54 3.18
155 156 1.082117 CACCGTAGTCGCCATTGTCC 61.082 60.000 0.00 0.00 35.54 4.02
156 157 1.876714 CCGTAGTCGCCATTGTCCG 60.877 63.158 0.00 0.00 35.54 4.79
157 158 1.876714 CGTAGTCGCCATTGTCCGG 60.877 63.158 0.00 0.00 0.00 5.14
158 159 2.171725 GTAGTCGCCATTGTCCGGC 61.172 63.158 0.00 0.00 46.62 6.13
163 164 2.899838 GCCATTGTCCGGCGCATA 60.900 61.111 10.83 0.00 40.35 3.14
164 165 3.022287 CCATTGTCCGGCGCATAC 58.978 61.111 10.83 4.18 0.00 2.39
165 166 1.523711 CCATTGTCCGGCGCATACT 60.524 57.895 10.83 0.00 0.00 2.12
166 167 1.643292 CATTGTCCGGCGCATACTG 59.357 57.895 10.83 0.00 0.00 2.74
167 168 2.180204 ATTGTCCGGCGCATACTGC 61.180 57.895 10.83 0.00 40.69 4.40
168 169 2.867793 ATTGTCCGGCGCATACTGCA 62.868 55.000 10.83 0.00 45.36 4.41
169 170 3.564027 GTCCGGCGCATACTGCAC 61.564 66.667 10.83 0.00 45.36 4.57
170 171 3.770040 TCCGGCGCATACTGCACT 61.770 61.111 10.83 0.00 45.36 4.40
171 172 2.819595 CCGGCGCATACTGCACTT 60.820 61.111 10.83 0.00 45.36 3.16
172 173 2.703409 CGGCGCATACTGCACTTC 59.297 61.111 10.83 0.00 45.36 3.01
173 174 1.811266 CGGCGCATACTGCACTTCT 60.811 57.895 10.83 0.00 45.36 2.85
174 175 1.361668 CGGCGCATACTGCACTTCTT 61.362 55.000 10.83 0.00 45.36 2.52
175 176 1.651987 GGCGCATACTGCACTTCTTA 58.348 50.000 10.83 0.00 45.36 2.10
176 177 2.213499 GGCGCATACTGCACTTCTTAT 58.787 47.619 10.83 0.00 45.36 1.73
177 178 2.221981 GGCGCATACTGCACTTCTTATC 59.778 50.000 10.83 0.00 45.36 1.75
178 179 2.221981 GCGCATACTGCACTTCTTATCC 59.778 50.000 0.30 0.00 45.36 2.59
179 180 2.802816 CGCATACTGCACTTCTTATCCC 59.197 50.000 0.00 0.00 45.36 3.85
180 181 3.142174 GCATACTGCACTTCTTATCCCC 58.858 50.000 0.00 0.00 44.26 4.81
181 182 3.181450 GCATACTGCACTTCTTATCCCCT 60.181 47.826 0.00 0.00 44.26 4.79
182 183 4.687219 GCATACTGCACTTCTTATCCCCTT 60.687 45.833 0.00 0.00 44.26 3.95
183 184 3.636153 ACTGCACTTCTTATCCCCTTC 57.364 47.619 0.00 0.00 0.00 3.46
184 185 2.239907 ACTGCACTTCTTATCCCCTTCC 59.760 50.000 0.00 0.00 0.00 3.46
185 186 1.564348 TGCACTTCTTATCCCCTTCCC 59.436 52.381 0.00 0.00 0.00 3.97
186 187 1.847088 GCACTTCTTATCCCCTTCCCT 59.153 52.381 0.00 0.00 0.00 4.20
187 188 2.158740 GCACTTCTTATCCCCTTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
188 189 3.388913 CACTTCTTATCCCCTTCCCTCT 58.611 50.000 0.00 0.00 0.00 3.69
189 190 3.135530 CACTTCTTATCCCCTTCCCTCTG 59.864 52.174 0.00 0.00 0.00 3.35
190 191 1.807814 TCTTATCCCCTTCCCTCTGC 58.192 55.000 0.00 0.00 0.00 4.26
191 192 1.295292 TCTTATCCCCTTCCCTCTGCT 59.705 52.381 0.00 0.00 0.00 4.24
192 193 2.522705 TCTTATCCCCTTCCCTCTGCTA 59.477 50.000 0.00 0.00 0.00 3.49
193 194 2.704190 TATCCCCTTCCCTCTGCTAG 57.296 55.000 0.00 0.00 0.00 3.42
194 195 0.766288 ATCCCCTTCCCTCTGCTAGC 60.766 60.000 8.10 8.10 0.00 3.42
195 196 1.383803 CCCCTTCCCTCTGCTAGCT 60.384 63.158 17.23 0.00 0.00 3.32
196 197 0.985490 CCCCTTCCCTCTGCTAGCTT 60.985 60.000 17.23 0.00 0.00 3.74
197 198 0.915364 CCCTTCCCTCTGCTAGCTTT 59.085 55.000 17.23 0.00 0.00 3.51
198 199 1.134250 CCCTTCCCTCTGCTAGCTTTC 60.134 57.143 17.23 0.00 0.00 2.62
199 200 1.556911 CCTTCCCTCTGCTAGCTTTCA 59.443 52.381 17.23 0.00 0.00 2.69
200 201 2.026822 CCTTCCCTCTGCTAGCTTTCAA 60.027 50.000 17.23 0.65 0.00 2.69
201 202 2.770164 TCCCTCTGCTAGCTTTCAAC 57.230 50.000 17.23 0.00 0.00 3.18
202 203 1.279271 TCCCTCTGCTAGCTTTCAACC 59.721 52.381 17.23 0.00 0.00 3.77
203 204 1.003580 CCCTCTGCTAGCTTTCAACCA 59.996 52.381 17.23 0.00 0.00 3.67
204 205 2.356535 CCCTCTGCTAGCTTTCAACCAT 60.357 50.000 17.23 0.00 0.00 3.55
205 206 2.681848 CCTCTGCTAGCTTTCAACCATG 59.318 50.000 17.23 0.00 0.00 3.66
206 207 3.341823 CTCTGCTAGCTTTCAACCATGT 58.658 45.455 17.23 0.00 0.00 3.21
207 208 3.338249 TCTGCTAGCTTTCAACCATGTC 58.662 45.455 17.23 0.00 0.00 3.06
208 209 3.008375 TCTGCTAGCTTTCAACCATGTCT 59.992 43.478 17.23 0.00 0.00 3.41
209 210 3.076621 TGCTAGCTTTCAACCATGTCTG 58.923 45.455 17.23 0.00 0.00 3.51
210 211 2.159462 GCTAGCTTTCAACCATGTCTGC 60.159 50.000 7.70 0.00 0.00 4.26
211 212 2.283145 AGCTTTCAACCATGTCTGCT 57.717 45.000 0.00 0.00 0.00 4.24
212 213 3.423539 AGCTTTCAACCATGTCTGCTA 57.576 42.857 0.00 0.00 0.00 3.49
213 214 3.754965 AGCTTTCAACCATGTCTGCTAA 58.245 40.909 0.00 0.00 0.00 3.09
214 215 3.755378 AGCTTTCAACCATGTCTGCTAAG 59.245 43.478 0.00 0.00 0.00 2.18
215 216 3.503748 GCTTTCAACCATGTCTGCTAAGT 59.496 43.478 0.00 0.00 0.00 2.24
216 217 4.614535 GCTTTCAACCATGTCTGCTAAGTG 60.615 45.833 0.00 0.00 0.00 3.16
217 218 4.350368 TTCAACCATGTCTGCTAAGTGA 57.650 40.909 0.00 0.00 0.00 3.41
218 219 4.350368 TCAACCATGTCTGCTAAGTGAA 57.650 40.909 0.00 0.00 0.00 3.18
219 220 4.318332 TCAACCATGTCTGCTAAGTGAAG 58.682 43.478 0.00 0.00 0.00 3.02
220 221 4.067896 CAACCATGTCTGCTAAGTGAAGT 58.932 43.478 0.00 0.00 0.00 3.01
221 222 3.668447 ACCATGTCTGCTAAGTGAAGTG 58.332 45.455 0.00 0.00 0.00 3.16
222 223 2.417933 CCATGTCTGCTAAGTGAAGTGC 59.582 50.000 0.00 0.00 0.00 4.40
223 224 3.332919 CATGTCTGCTAAGTGAAGTGCT 58.667 45.455 0.00 0.00 0.00 4.40
224 225 4.498241 CATGTCTGCTAAGTGAAGTGCTA 58.502 43.478 0.00 0.00 0.00 3.49
225 226 4.600692 TGTCTGCTAAGTGAAGTGCTAA 57.399 40.909 0.00 0.00 0.00 3.09
226 227 4.307432 TGTCTGCTAAGTGAAGTGCTAAC 58.693 43.478 0.00 0.00 0.00 2.34
227 228 4.039245 TGTCTGCTAAGTGAAGTGCTAACT 59.961 41.667 0.00 0.00 38.71 2.24
228 229 4.623595 GTCTGCTAAGTGAAGTGCTAACTC 59.376 45.833 0.00 0.00 34.77 3.01
229 230 4.524714 TCTGCTAAGTGAAGTGCTAACTCT 59.475 41.667 0.00 0.00 34.77 3.24
230 231 5.011125 TCTGCTAAGTGAAGTGCTAACTCTT 59.989 40.000 0.00 0.00 34.77 2.85
231 232 6.208797 TCTGCTAAGTGAAGTGCTAACTCTTA 59.791 38.462 0.00 0.00 34.77 2.10
232 233 6.755206 TGCTAAGTGAAGTGCTAACTCTTAA 58.245 36.000 0.00 0.00 34.77 1.85
233 234 7.386851 TGCTAAGTGAAGTGCTAACTCTTAAT 58.613 34.615 0.00 0.00 34.77 1.40
234 235 7.545965 TGCTAAGTGAAGTGCTAACTCTTAATC 59.454 37.037 0.00 0.00 34.77 1.75
235 236 7.545965 GCTAAGTGAAGTGCTAACTCTTAATCA 59.454 37.037 0.00 0.00 34.77 2.57
236 237 9.593134 CTAAGTGAAGTGCTAACTCTTAATCAT 57.407 33.333 0.00 0.00 34.77 2.45
238 239 8.934507 AGTGAAGTGCTAACTCTTAATCATAC 57.065 34.615 0.00 0.00 34.77 2.39
239 240 7.982354 AGTGAAGTGCTAACTCTTAATCATACC 59.018 37.037 0.00 0.00 34.77 2.73
240 241 7.982354 GTGAAGTGCTAACTCTTAATCATACCT 59.018 37.037 0.00 0.00 34.77 3.08
241 242 8.198109 TGAAGTGCTAACTCTTAATCATACCTC 58.802 37.037 0.00 0.00 34.77 3.85
242 243 7.661536 AGTGCTAACTCTTAATCATACCTCA 57.338 36.000 0.00 0.00 26.77 3.86
243 244 8.256356 AGTGCTAACTCTTAATCATACCTCAT 57.744 34.615 0.00 0.00 26.77 2.90
244 245 8.147058 AGTGCTAACTCTTAATCATACCTCATG 58.853 37.037 0.00 0.00 30.74 3.07
245 246 6.931281 TGCTAACTCTTAATCATACCTCATGC 59.069 38.462 0.00 0.00 34.35 4.06
246 247 6.090088 GCTAACTCTTAATCATACCTCATGCG 59.910 42.308 0.00 0.00 34.35 4.73
247 248 5.537300 ACTCTTAATCATACCTCATGCGT 57.463 39.130 0.00 0.00 34.35 5.24
248 249 5.292765 ACTCTTAATCATACCTCATGCGTG 58.707 41.667 0.00 0.00 34.35 5.34
249 250 4.058124 TCTTAATCATACCTCATGCGTGC 58.942 43.478 0.00 0.00 34.35 5.34
250 251 2.330440 AATCATACCTCATGCGTGCA 57.670 45.000 0.00 0.00 34.35 4.57
251 252 2.330440 ATCATACCTCATGCGTGCAA 57.670 45.000 0.00 0.00 34.35 4.08
252 253 1.368641 TCATACCTCATGCGTGCAAC 58.631 50.000 0.00 0.00 34.35 4.17
253 254 0.378257 CATACCTCATGCGTGCAACC 59.622 55.000 0.00 0.00 0.00 3.77
254 255 0.035534 ATACCTCATGCGTGCAACCA 60.036 50.000 0.00 0.00 0.00 3.67
255 256 0.250510 TACCTCATGCGTGCAACCAA 60.251 50.000 0.00 0.00 0.00 3.67
256 257 1.106351 ACCTCATGCGTGCAACCAAA 61.106 50.000 0.00 0.00 0.00 3.28
257 258 0.664166 CCTCATGCGTGCAACCAAAC 60.664 55.000 0.00 0.00 0.00 2.93
258 259 0.030504 CTCATGCGTGCAACCAAACA 59.969 50.000 0.00 0.00 0.00 2.83
259 260 0.248825 TCATGCGTGCAACCAAACAC 60.249 50.000 0.00 0.00 0.00 3.32
260 261 1.067250 ATGCGTGCAACCAAACACC 59.933 52.632 0.00 0.00 33.09 4.16
261 262 2.653766 GCGTGCAACCAAACACCG 60.654 61.111 0.00 0.00 33.09 4.94
262 263 3.102985 CGTGCAACCAAACACCGA 58.897 55.556 0.00 0.00 33.09 4.69
263 264 1.010125 CGTGCAACCAAACACCGAG 60.010 57.895 0.00 0.00 33.09 4.63
264 265 1.711060 CGTGCAACCAAACACCGAGT 61.711 55.000 0.00 0.00 33.09 4.18
265 266 0.454196 GTGCAACCAAACACCGAGTT 59.546 50.000 0.00 0.00 43.89 3.01
266 267 0.736053 TGCAACCAAACACCGAGTTC 59.264 50.000 0.00 0.00 40.26 3.01
267 268 0.736053 GCAACCAAACACCGAGTTCA 59.264 50.000 0.00 0.00 40.26 3.18
268 269 1.336755 GCAACCAAACACCGAGTTCAT 59.663 47.619 0.00 0.00 40.26 2.57
269 270 2.858260 GCAACCAAACACCGAGTTCATG 60.858 50.000 0.00 0.00 40.26 3.07
270 271 2.341846 ACCAAACACCGAGTTCATGT 57.658 45.000 0.00 0.00 40.26 3.21
271 272 1.946768 ACCAAACACCGAGTTCATGTG 59.053 47.619 0.00 0.00 40.26 3.21
272 273 1.334960 CCAAACACCGAGTTCATGTGC 60.335 52.381 0.00 0.00 40.26 4.57
273 274 0.951558 AAACACCGAGTTCATGTGCC 59.048 50.000 0.00 0.00 40.26 5.01
274 275 1.227999 AACACCGAGTTCATGTGCCG 61.228 55.000 0.00 0.00 34.74 5.69
275 276 2.742372 ACCGAGTTCATGTGCCGC 60.742 61.111 0.00 0.00 0.00 6.53
276 277 2.434884 CCGAGTTCATGTGCCGCT 60.435 61.111 0.00 0.00 0.00 5.52
277 278 2.034879 CCGAGTTCATGTGCCGCTT 61.035 57.895 0.00 0.00 0.00 4.68
278 279 1.133253 CGAGTTCATGTGCCGCTTG 59.867 57.895 0.00 0.00 0.00 4.01
279 280 1.503542 GAGTTCATGTGCCGCTTGG 59.496 57.895 0.00 0.00 0.00 3.61
280 281 1.926511 GAGTTCATGTGCCGCTTGGG 61.927 60.000 0.00 0.00 39.58 4.12
289 290 4.137872 CCGCTTGGGCCAATGCAG 62.138 66.667 28.08 22.16 40.13 4.41
290 291 4.137872 CGCTTGGGCCAATGCAGG 62.138 66.667 28.08 16.52 40.13 4.85
299 300 3.940229 CCAATGCAGGCAACCAAAT 57.060 47.368 0.00 0.00 37.17 2.32
301 302 3.331478 CCAATGCAGGCAACCAAATAA 57.669 42.857 0.00 0.00 37.17 1.40
302 303 3.672808 CCAATGCAGGCAACCAAATAAA 58.327 40.909 0.00 0.00 37.17 1.40
303 304 3.685756 CCAATGCAGGCAACCAAATAAAG 59.314 43.478 0.00 0.00 37.17 1.85
304 305 4.317488 CAATGCAGGCAACCAAATAAAGT 58.683 39.130 0.00 0.00 37.17 2.66
305 306 3.383620 TGCAGGCAACCAAATAAAGTG 57.616 42.857 0.00 0.00 37.17 3.16
306 307 2.068519 GCAGGCAACCAAATAAAGTGC 58.931 47.619 0.00 0.00 37.17 4.40
307 308 2.547642 GCAGGCAACCAAATAAAGTGCA 60.548 45.455 0.00 0.00 37.17 4.57
308 309 3.059166 CAGGCAACCAAATAAAGTGCAC 58.941 45.455 9.40 9.40 37.17 4.57
309 310 2.058057 GGCAACCAAATAAAGTGCACG 58.942 47.619 12.01 0.00 0.00 5.34
310 311 2.544903 GGCAACCAAATAAAGTGCACGT 60.545 45.455 12.01 5.01 0.00 4.49
311 312 2.470999 GCAACCAAATAAAGTGCACGTG 59.529 45.455 12.28 12.28 0.00 4.49
312 313 2.415697 ACCAAATAAAGTGCACGTGC 57.584 45.000 33.11 33.11 42.50 5.34
313 314 1.326576 CCAAATAAAGTGCACGTGCG 58.673 50.000 33.22 16.53 45.83 5.34
314 315 1.334599 CCAAATAAAGTGCACGTGCGT 60.335 47.619 33.22 21.64 45.83 5.24
315 316 2.096169 CCAAATAAAGTGCACGTGCGTA 60.096 45.455 33.22 22.24 45.83 4.42
316 317 3.425625 CCAAATAAAGTGCACGTGCGTAT 60.426 43.478 33.22 23.31 45.83 3.06
317 318 4.155449 CAAATAAAGTGCACGTGCGTATT 58.845 39.130 33.22 26.75 45.83 1.89
318 319 5.317559 CAAATAAAGTGCACGTGCGTATTA 58.682 37.500 33.22 28.03 45.83 0.98
319 320 2.867456 AAAGTGCACGTGCGTATTAC 57.133 45.000 33.22 24.96 45.83 1.89
320 321 1.073177 AAGTGCACGTGCGTATTACC 58.927 50.000 33.22 15.30 45.83 2.85
321 322 0.245539 AGTGCACGTGCGTATTACCT 59.754 50.000 33.22 17.11 45.83 3.08
322 323 1.473677 AGTGCACGTGCGTATTACCTA 59.526 47.619 33.22 11.66 45.83 3.08
323 324 2.094597 AGTGCACGTGCGTATTACCTAA 60.095 45.455 33.22 10.88 45.83 2.69
324 325 2.861935 GTGCACGTGCGTATTACCTAAT 59.138 45.455 33.22 0.00 45.83 1.73
325 326 2.861335 TGCACGTGCGTATTACCTAATG 59.139 45.455 33.22 0.00 45.83 1.90
326 327 2.348218 GCACGTGCGTATTACCTAATGC 60.348 50.000 26.77 0.00 0.00 3.56
327 328 2.861335 CACGTGCGTATTACCTAATGCA 59.139 45.455 0.82 0.00 0.00 3.96
328 329 3.060540 CACGTGCGTATTACCTAATGCAG 60.061 47.826 0.82 0.00 29.02 4.41
339 340 3.884037 CCTAATGCAGGGACCCTAAAT 57.116 47.619 14.38 7.03 41.26 1.40
340 341 3.490348 CCTAATGCAGGGACCCTAAATG 58.510 50.000 14.38 2.40 41.26 2.32
341 342 3.117512 CCTAATGCAGGGACCCTAAATGT 60.118 47.826 14.38 0.20 41.26 2.71
342 343 4.104102 CCTAATGCAGGGACCCTAAATGTA 59.896 45.833 14.38 1.07 41.26 2.29
343 344 3.864789 ATGCAGGGACCCTAAATGTAG 57.135 47.619 14.38 0.00 29.64 2.74
344 345 1.843851 TGCAGGGACCCTAAATGTAGG 59.156 52.381 14.38 1.35 45.98 3.18
345 346 1.477014 GCAGGGACCCTAAATGTAGGC 60.477 57.143 14.38 6.05 45.16 3.93
346 347 1.843851 CAGGGACCCTAAATGTAGGCA 59.156 52.381 14.38 0.00 45.16 4.75
347 348 2.241176 CAGGGACCCTAAATGTAGGCAA 59.759 50.000 14.38 0.00 45.16 4.52
348 349 2.241430 AGGGACCCTAAATGTAGGCAAC 59.759 50.000 12.85 0.00 45.16 4.17
349 350 2.651455 GGACCCTAAATGTAGGCAACC 58.349 52.381 3.01 2.92 45.16 3.77
350 351 2.025699 GGACCCTAAATGTAGGCAACCA 60.026 50.000 3.01 0.00 45.16 3.67
351 352 3.562609 GGACCCTAAATGTAGGCAACCAA 60.563 47.826 3.01 0.00 45.16 3.67
352 353 4.083565 GACCCTAAATGTAGGCAACCAAA 58.916 43.478 3.01 0.00 45.16 3.28
353 354 3.830178 ACCCTAAATGTAGGCAACCAAAC 59.170 43.478 3.01 0.00 45.16 2.93
354 355 3.829601 CCCTAAATGTAGGCAACCAAACA 59.170 43.478 3.01 0.00 45.16 2.83
355 356 4.282195 CCCTAAATGTAGGCAACCAAACAA 59.718 41.667 3.01 0.00 45.16 2.83
356 357 5.227152 CCTAAATGTAGGCAACCAAACAAC 58.773 41.667 0.00 0.00 40.69 3.32
357 358 5.010617 CCTAAATGTAGGCAACCAAACAACT 59.989 40.000 0.00 0.00 40.69 3.16
358 359 4.584327 AATGTAGGCAACCAAACAACTC 57.416 40.909 0.00 0.00 37.17 3.01
359 360 3.006112 TGTAGGCAACCAAACAACTCA 57.994 42.857 0.00 0.00 37.17 3.41
360 361 2.685897 TGTAGGCAACCAAACAACTCAC 59.314 45.455 0.00 0.00 37.17 3.51
361 362 1.846007 AGGCAACCAAACAACTCACA 58.154 45.000 0.00 0.00 37.17 3.58
362 363 1.750778 AGGCAACCAAACAACTCACAG 59.249 47.619 0.00 0.00 37.17 3.66
363 364 1.748493 GGCAACCAAACAACTCACAGA 59.252 47.619 0.00 0.00 0.00 3.41
364 365 2.362077 GGCAACCAAACAACTCACAGAT 59.638 45.455 0.00 0.00 0.00 2.90
365 366 3.374745 GCAACCAAACAACTCACAGATG 58.625 45.455 0.00 0.00 0.00 2.90
366 367 3.181487 GCAACCAAACAACTCACAGATGT 60.181 43.478 0.00 0.00 32.27 3.06
367 368 4.601019 CAACCAAACAACTCACAGATGTC 58.399 43.478 0.00 0.00 29.45 3.06
368 369 2.872245 ACCAAACAACTCACAGATGTCG 59.128 45.455 0.00 0.00 29.45 4.35
369 370 2.349817 CCAAACAACTCACAGATGTCGC 60.350 50.000 0.00 0.00 29.45 5.19
370 371 1.139989 AACAACTCACAGATGTCGCG 58.860 50.000 0.00 0.00 29.45 5.87
371 372 0.032130 ACAACTCACAGATGTCGCGT 59.968 50.000 5.77 0.00 0.00 6.01
372 373 1.268625 ACAACTCACAGATGTCGCGTA 59.731 47.619 5.77 0.00 0.00 4.42
373 374 2.094700 ACAACTCACAGATGTCGCGTAT 60.095 45.455 5.77 1.52 0.00 3.06
374 375 2.194800 ACTCACAGATGTCGCGTATG 57.805 50.000 5.77 0.00 0.00 2.39
375 376 1.743394 ACTCACAGATGTCGCGTATGA 59.257 47.619 5.77 0.00 0.00 2.15
376 377 2.223363 ACTCACAGATGTCGCGTATGAG 60.223 50.000 5.77 11.80 38.42 2.90
377 378 1.065551 TCACAGATGTCGCGTATGAGG 59.934 52.381 5.77 0.00 0.00 3.86
378 379 0.249073 ACAGATGTCGCGTATGAGGC 60.249 55.000 5.77 0.00 0.00 4.70
379 380 0.031314 CAGATGTCGCGTATGAGGCT 59.969 55.000 5.77 0.00 0.00 4.58
380 381 0.031314 AGATGTCGCGTATGAGGCTG 59.969 55.000 5.77 0.00 0.00 4.85
381 382 0.249073 GATGTCGCGTATGAGGCTGT 60.249 55.000 5.77 0.00 0.00 4.40
382 383 0.175760 ATGTCGCGTATGAGGCTGTT 59.824 50.000 5.77 0.00 0.00 3.16
383 384 0.037697 TGTCGCGTATGAGGCTGTTT 60.038 50.000 5.77 0.00 0.00 2.83
384 385 1.076332 GTCGCGTATGAGGCTGTTTT 58.924 50.000 5.77 0.00 0.00 2.43
385 386 1.463444 GTCGCGTATGAGGCTGTTTTT 59.537 47.619 5.77 0.00 0.00 1.94
401 402 2.276732 TTTTTCAGAGCCAGACTGGG 57.723 50.000 23.09 6.39 38.19 4.45
408 409 3.090765 GCCAGACTGGGTTGGGAT 58.909 61.111 23.09 0.00 38.19 3.85
409 410 1.379044 GCCAGACTGGGTTGGGATG 60.379 63.158 23.09 0.00 38.19 3.51
410 411 2.078452 CCAGACTGGGTTGGGATGT 58.922 57.895 14.26 0.00 32.67 3.06
411 412 0.322816 CCAGACTGGGTTGGGATGTG 60.323 60.000 14.26 0.00 32.67 3.21
412 413 0.401738 CAGACTGGGTTGGGATGTGT 59.598 55.000 0.00 0.00 0.00 3.72
413 414 1.628340 CAGACTGGGTTGGGATGTGTA 59.372 52.381 0.00 0.00 0.00 2.90
414 415 2.239654 CAGACTGGGTTGGGATGTGTAT 59.760 50.000 0.00 0.00 0.00 2.29
415 416 2.239654 AGACTGGGTTGGGATGTGTATG 59.760 50.000 0.00 0.00 0.00 2.39
416 417 1.340991 ACTGGGTTGGGATGTGTATGC 60.341 52.381 0.00 0.00 0.00 3.14
417 418 0.701147 TGGGTTGGGATGTGTATGCA 59.299 50.000 0.00 0.00 0.00 3.96
418 419 1.076187 TGGGTTGGGATGTGTATGCAA 59.924 47.619 0.00 0.00 0.00 4.08
419 420 1.476488 GGGTTGGGATGTGTATGCAAC 59.524 52.381 0.00 0.00 0.00 4.17
420 421 2.166829 GGTTGGGATGTGTATGCAACA 58.833 47.619 0.00 0.00 35.06 3.33
435 436 8.560355 TGTATGCAACACAACTACTATTCATT 57.440 30.769 2.23 0.00 31.43 2.57
436 437 9.660180 TGTATGCAACACAACTACTATTCATTA 57.340 29.630 2.23 0.00 31.43 1.90
437 438 9.916397 GTATGCAACACAACTACTATTCATTAC 57.084 33.333 0.00 0.00 0.00 1.89
438 439 7.056002 TGCAACACAACTACTATTCATTACG 57.944 36.000 0.00 0.00 0.00 3.18
439 440 6.091577 TGCAACACAACTACTATTCATTACGG 59.908 38.462 0.00 0.00 0.00 4.02
440 441 6.475207 CAACACAACTACTATTCATTACGGC 58.525 40.000 0.00 0.00 0.00 5.68
441 442 5.726397 ACACAACTACTATTCATTACGGCA 58.274 37.500 0.00 0.00 0.00 5.69
442 443 6.167685 ACACAACTACTATTCATTACGGCAA 58.832 36.000 0.00 0.00 0.00 4.52
443 444 6.091713 ACACAACTACTATTCATTACGGCAAC 59.908 38.462 0.00 0.00 0.00 4.17
444 445 5.583457 ACAACTACTATTCATTACGGCAACC 59.417 40.000 0.00 0.00 0.00 3.77
445 446 5.347620 ACTACTATTCATTACGGCAACCA 57.652 39.130 0.00 0.00 0.00 3.67
446 447 5.736813 ACTACTATTCATTACGGCAACCAA 58.263 37.500 0.00 0.00 0.00 3.67
447 448 6.174760 ACTACTATTCATTACGGCAACCAAA 58.825 36.000 0.00 0.00 0.00 3.28
448 449 5.305139 ACTATTCATTACGGCAACCAAAC 57.695 39.130 0.00 0.00 0.00 2.93
449 450 4.762765 ACTATTCATTACGGCAACCAAACA 59.237 37.500 0.00 0.00 0.00 2.83
450 451 3.357166 TTCATTACGGCAACCAAACAC 57.643 42.857 0.00 0.00 0.00 3.32
451 452 1.264557 TCATTACGGCAACCAAACACG 59.735 47.619 0.00 0.00 0.00 4.49
452 453 0.039888 ATTACGGCAACCAAACACGC 60.040 50.000 0.00 0.00 0.00 5.34
453 454 2.376231 TTACGGCAACCAAACACGCG 62.376 55.000 3.53 3.53 0.00 6.01
455 456 4.560856 GGCAACCAAACACGCGCA 62.561 61.111 5.73 0.00 0.00 6.09
456 457 2.354539 GCAACCAAACACGCGCAT 60.355 55.556 5.73 0.00 0.00 4.73
457 458 2.647381 GCAACCAAACACGCGCATG 61.647 57.895 5.73 4.48 0.00 4.06
458 459 1.299014 CAACCAAACACGCGCATGT 60.299 52.632 1.82 1.82 0.00 3.21
459 460 0.040870 CAACCAAACACGCGCATGTA 60.041 50.000 10.53 0.00 30.75 2.29
460 461 0.663688 AACCAAACACGCGCATGTAA 59.336 45.000 10.53 0.00 30.75 2.41
461 462 0.663688 ACCAAACACGCGCATGTAAA 59.336 45.000 10.53 0.00 30.75 2.01
462 463 1.268352 ACCAAACACGCGCATGTAAAT 59.732 42.857 10.53 0.00 30.75 1.40
463 464 2.484651 ACCAAACACGCGCATGTAAATA 59.515 40.909 10.53 0.00 30.75 1.40
464 465 2.843643 CCAAACACGCGCATGTAAATAC 59.156 45.455 10.53 0.00 30.75 1.89
465 466 3.425625 CCAAACACGCGCATGTAAATACT 60.426 43.478 10.53 0.00 30.75 2.12
466 467 3.383546 AACACGCGCATGTAAATACTG 57.616 42.857 10.53 0.00 30.75 2.74
467 468 2.612604 ACACGCGCATGTAAATACTGA 58.387 42.857 7.63 0.00 0.00 3.41
468 469 2.603110 ACACGCGCATGTAAATACTGAG 59.397 45.455 7.63 0.00 0.00 3.35
469 470 2.857748 CACGCGCATGTAAATACTGAGA 59.142 45.455 5.73 0.00 0.00 3.27
470 471 3.490896 CACGCGCATGTAAATACTGAGAT 59.509 43.478 5.73 0.00 0.00 2.75
471 472 3.490896 ACGCGCATGTAAATACTGAGATG 59.509 43.478 5.73 0.00 0.00 2.90
472 473 3.120889 CGCGCATGTAAATACTGAGATGG 60.121 47.826 8.75 0.00 0.00 3.51
473 474 3.187227 GCGCATGTAAATACTGAGATGGG 59.813 47.826 0.30 0.00 0.00 4.00
474 475 3.748048 CGCATGTAAATACTGAGATGGGG 59.252 47.826 0.00 0.00 0.00 4.96
475 476 4.503123 CGCATGTAAATACTGAGATGGGGA 60.503 45.833 0.00 0.00 0.00 4.81
476 477 4.999950 GCATGTAAATACTGAGATGGGGAG 59.000 45.833 0.00 0.00 0.00 4.30
477 478 5.221722 GCATGTAAATACTGAGATGGGGAGA 60.222 44.000 0.00 0.00 0.00 3.71
478 479 6.462500 CATGTAAATACTGAGATGGGGAGAG 58.538 44.000 0.00 0.00 0.00 3.20
479 480 5.777449 TGTAAATACTGAGATGGGGAGAGA 58.223 41.667 0.00 0.00 0.00 3.10
480 481 5.835819 TGTAAATACTGAGATGGGGAGAGAG 59.164 44.000 0.00 0.00 0.00 3.20
481 482 4.823364 AATACTGAGATGGGGAGAGAGA 57.177 45.455 0.00 0.00 0.00 3.10
482 483 4.823364 ATACTGAGATGGGGAGAGAGAA 57.177 45.455 0.00 0.00 0.00 2.87
483 484 3.481559 ACTGAGATGGGGAGAGAGAAA 57.518 47.619 0.00 0.00 0.00 2.52
484 485 3.796111 ACTGAGATGGGGAGAGAGAAAA 58.204 45.455 0.00 0.00 0.00 2.29
485 486 4.369872 ACTGAGATGGGGAGAGAGAAAAT 58.630 43.478 0.00 0.00 0.00 1.82
486 487 5.533112 ACTGAGATGGGGAGAGAGAAAATA 58.467 41.667 0.00 0.00 0.00 1.40
487 488 5.365314 ACTGAGATGGGGAGAGAGAAAATAC 59.635 44.000 0.00 0.00 0.00 1.89
488 489 5.280499 TGAGATGGGGAGAGAGAAAATACA 58.720 41.667 0.00 0.00 0.00 2.29
489 490 5.726308 TGAGATGGGGAGAGAGAAAATACAA 59.274 40.000 0.00 0.00 0.00 2.41
490 491 6.126940 TGAGATGGGGAGAGAGAAAATACAAG 60.127 42.308 0.00 0.00 0.00 3.16
491 492 5.966935 AGATGGGGAGAGAGAAAATACAAGA 59.033 40.000 0.00 0.00 0.00 3.02
492 493 5.683876 TGGGGAGAGAGAAAATACAAGAG 57.316 43.478 0.00 0.00 0.00 2.85
493 494 5.342017 TGGGGAGAGAGAAAATACAAGAGA 58.658 41.667 0.00 0.00 0.00 3.10
494 495 5.785423 TGGGGAGAGAGAAAATACAAGAGAA 59.215 40.000 0.00 0.00 0.00 2.87
495 496 6.272324 TGGGGAGAGAGAAAATACAAGAGAAA 59.728 38.462 0.00 0.00 0.00 2.52
496 497 7.168905 GGGGAGAGAGAAAATACAAGAGAAAA 58.831 38.462 0.00 0.00 0.00 2.29
497 498 7.831690 GGGGAGAGAGAAAATACAAGAGAAAAT 59.168 37.037 0.00 0.00 0.00 1.82
498 499 9.892130 GGGAGAGAGAAAATACAAGAGAAAATA 57.108 33.333 0.00 0.00 0.00 1.40
546 547 9.956640 AAAAGATGATCTCTTATCACAGTTTCT 57.043 29.630 0.00 0.00 43.60 2.52
547 548 9.598517 AAAGATGATCTCTTATCACAGTTTCTC 57.401 33.333 0.00 0.00 43.60 2.87
548 549 8.537728 AGATGATCTCTTATCACAGTTTCTCT 57.462 34.615 0.00 0.00 0.00 3.10
549 550 8.632679 AGATGATCTCTTATCACAGTTTCTCTC 58.367 37.037 0.00 0.00 0.00 3.20
550 551 7.709149 TGATCTCTTATCACAGTTTCTCTCA 57.291 36.000 0.00 0.00 0.00 3.27
551 552 8.303780 TGATCTCTTATCACAGTTTCTCTCAT 57.696 34.615 0.00 0.00 0.00 2.90
552 553 8.412456 TGATCTCTTATCACAGTTTCTCTCATC 58.588 37.037 0.00 0.00 0.00 2.92
553 554 7.709149 TCTCTTATCACAGTTTCTCTCATCA 57.291 36.000 0.00 0.00 0.00 3.07
554 555 8.303780 TCTCTTATCACAGTTTCTCTCATCAT 57.696 34.615 0.00 0.00 0.00 2.45
555 556 9.413734 TCTCTTATCACAGTTTCTCTCATCATA 57.586 33.333 0.00 0.00 0.00 2.15
562 563 9.538508 TCACAGTTTCTCTCATCATATATGTTG 57.461 33.333 15.02 15.02 0.00 3.33
563 564 8.771766 CACAGTTTCTCTCATCATATATGTTGG 58.228 37.037 19.14 12.24 0.00 3.77
564 565 7.935755 ACAGTTTCTCTCATCATATATGTTGGG 59.064 37.037 19.14 17.17 30.92 4.12
565 566 8.152898 CAGTTTCTCTCATCATATATGTTGGGA 58.847 37.037 20.33 20.33 35.30 4.37
566 567 8.153550 AGTTTCTCTCATCATATATGTTGGGAC 58.846 37.037 18.50 11.64 33.35 4.46
567 568 7.616528 TTCTCTCATCATATATGTTGGGACA 57.383 36.000 18.50 9.20 40.71 4.02
617 619 0.596577 GAGTCAAAGGAAAACGGGCC 59.403 55.000 0.00 0.00 0.00 5.80
618 620 0.185175 AGTCAAAGGAAAACGGGCCT 59.815 50.000 0.84 0.00 35.61 5.19
622 624 0.479378 AAAGGAAAACGGGCCTGGTA 59.521 50.000 18.00 0.00 34.00 3.25
632 634 3.782443 GCCTGGTAGACACCCGGG 61.782 72.222 22.25 22.25 46.61 5.73
677 680 0.586802 GACTGTTTGGCAACGAGACC 59.413 55.000 0.00 0.00 42.51 3.85
680 683 2.975799 TTTGGCAACGAGACCGCC 60.976 61.111 0.00 0.00 46.43 6.13
1950 2032 1.144936 GAATGGACGGGAGCAGGAG 59.855 63.158 0.00 0.00 0.00 3.69
1998 2080 1.760192 ATGAGCATGCCAAGAAGGTC 58.240 50.000 15.66 2.97 40.61 3.85
2097 2179 2.154854 TGCAATACAGCGGAGATAGC 57.845 50.000 0.00 0.00 37.31 2.97
2226 2308 1.928868 CCAATGGCAGAGGGAAAAGT 58.071 50.000 0.00 0.00 0.00 2.66
2349 2431 1.806542 GTGCTCGAAGGATCAAAAGCA 59.193 47.619 0.00 0.00 34.65 3.91
2725 2807 3.897239 TGTGTCAAATCAGGGTTCTTGT 58.103 40.909 0.00 0.00 0.00 3.16
2735 2817 3.056107 TCAGGGTTCTTGTATCCTCGTTG 60.056 47.826 0.00 0.00 0.00 4.10
2807 2889 0.622136 TCATCTGCAGGCTGGTCAAT 59.378 50.000 17.64 0.00 0.00 2.57
2820 2902 3.891366 GCTGGTCAATATTGGGTGCTATT 59.109 43.478 15.36 0.00 0.00 1.73
2830 2912 0.928229 GGGTGCTATTGTCTTACGCG 59.072 55.000 3.53 3.53 0.00 6.01
2831 2913 0.300789 GGTGCTATTGTCTTACGCGC 59.699 55.000 5.73 0.00 0.00 6.86
2893 2989 4.757799 TTGCGCTTAATTAGAGTTGCAA 57.242 36.364 9.73 0.00 36.22 4.08
2901 2997 6.969473 GCTTAATTAGAGTTGCAATGTCTTCC 59.031 38.462 16.80 0.00 0.00 3.46
2907 3003 4.889409 AGAGTTGCAATGTCTTCCTTTTGA 59.111 37.500 0.59 0.00 0.00 2.69
2914 3010 6.925165 TGCAATGTCTTCCTTTTGATTTCTTC 59.075 34.615 0.00 0.00 0.00 2.87
3032 3156 7.880195 AGCAAGTTCTTATAGTGAGAATGTTGT 59.120 33.333 0.00 0.00 35.74 3.32
3033 3157 8.507249 GCAAGTTCTTATAGTGAGAATGTTGTT 58.493 33.333 0.00 0.00 35.74 2.83
3034 3158 9.817365 CAAGTTCTTATAGTGAGAATGTTGTTG 57.183 33.333 0.00 0.00 35.74 3.33
3035 3159 9.561069 AAGTTCTTATAGTGAGAATGTTGTTGT 57.439 29.630 0.00 0.00 35.74 3.32
3036 3160 9.561069 AGTTCTTATAGTGAGAATGTTGTTGTT 57.439 29.630 0.00 0.00 35.74 2.83
3067 3191 9.944376 TTAAGCAAGTTCTTATAGTGAGAATGT 57.056 29.630 0.00 0.00 35.74 2.71
3068 3192 8.854614 AAGCAAGTTCTTATAGTGAGAATGTT 57.145 30.769 0.00 0.00 35.74 2.71
3069 3193 8.261492 AGCAAGTTCTTATAGTGAGAATGTTG 57.739 34.615 0.00 0.00 35.74 3.33
3124 3250 4.288626 TCCTACCATCCATTATGTAAGGCC 59.711 45.833 0.00 0.00 36.33 5.19
3134 3260 5.396660 CCATTATGTAAGGCCTGCCAATTTT 60.397 40.000 5.69 0.00 38.92 1.82
3191 3321 7.970102 TGTTATAGTTGAGGGTCAAAAGTAGT 58.030 34.615 0.00 0.00 38.22 2.73
3215 3346 5.163764 TGGTTAGCTTTAACATGATTCGCTG 60.164 40.000 0.00 0.00 0.00 5.18
3230 3361 0.806868 CGCTGGTGCTTTCATCACAT 59.193 50.000 0.00 0.00 36.22 3.21
3349 3486 5.032863 GTGATCTCTGCACATGTTTAATGC 58.967 41.667 0.00 0.00 39.88 3.56
3472 3618 6.238374 GGTGTTTGATACGGGTGATTATCTTG 60.238 42.308 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.880796 CGCGCCATGGTATCGTCAA 60.881 57.895 14.67 0.00 0.00 3.18
1 2 2.279186 CGCGCCATGGTATCGTCA 60.279 61.111 14.67 0.00 0.00 4.35
2 3 2.016704 CTCGCGCCATGGTATCGTC 61.017 63.158 14.67 4.39 0.00 4.20
3 4 2.027605 CTCGCGCCATGGTATCGT 59.972 61.111 14.67 0.00 0.00 3.73
4 5 3.406361 GCTCGCGCCATGGTATCG 61.406 66.667 14.67 14.07 0.00 2.92
5 6 2.280119 TGCTCGCGCCATGGTATC 60.280 61.111 14.67 1.74 34.43 2.24
6 7 2.588877 GTGCTCGCGCCATGGTAT 60.589 61.111 14.67 0.00 34.43 2.73
7 8 3.770040 AGTGCTCGCGCCATGGTA 61.770 61.111 14.67 0.00 34.43 3.25
13 14 4.527157 GAATGCAGTGCTCGCGCC 62.527 66.667 17.60 0.00 34.43 6.53
14 15 3.431683 GAGAATGCAGTGCTCGCGC 62.432 63.158 17.60 0.00 0.00 6.86
15 16 2.699809 GAGAATGCAGTGCTCGCG 59.300 61.111 17.60 0.00 0.00 5.87
16 17 1.427592 GAGGAGAATGCAGTGCTCGC 61.428 60.000 17.60 8.10 0.00 5.03
17 18 0.809241 GGAGGAGAATGCAGTGCTCG 60.809 60.000 17.60 0.00 32.20 5.03
18 19 0.540923 AGGAGGAGAATGCAGTGCTC 59.459 55.000 17.60 6.46 0.00 4.26
19 20 0.540923 GAGGAGGAGAATGCAGTGCT 59.459 55.000 17.60 0.00 0.00 4.40
20 21 0.540923 AGAGGAGGAGAATGCAGTGC 59.459 55.000 8.58 8.58 0.00 4.40
21 22 1.554160 ACAGAGGAGGAGAATGCAGTG 59.446 52.381 0.00 0.00 0.00 3.66
22 23 1.830477 GACAGAGGAGGAGAATGCAGT 59.170 52.381 0.00 0.00 0.00 4.40
23 24 1.138661 GGACAGAGGAGGAGAATGCAG 59.861 57.143 0.00 0.00 0.00 4.41
24 25 1.198713 GGACAGAGGAGGAGAATGCA 58.801 55.000 0.00 0.00 0.00 3.96
25 26 1.198713 TGGACAGAGGAGGAGAATGC 58.801 55.000 0.00 0.00 0.00 3.56
26 27 3.199508 ACAATGGACAGAGGAGGAGAATG 59.800 47.826 0.00 0.00 0.00 2.67
27 28 3.454082 GACAATGGACAGAGGAGGAGAAT 59.546 47.826 0.00 0.00 0.00 2.40
28 29 2.834549 GACAATGGACAGAGGAGGAGAA 59.165 50.000 0.00 0.00 0.00 2.87
29 30 2.043664 AGACAATGGACAGAGGAGGAGA 59.956 50.000 0.00 0.00 0.00 3.71
30 31 2.465813 AGACAATGGACAGAGGAGGAG 58.534 52.381 0.00 0.00 0.00 3.69
31 32 2.630889 AGACAATGGACAGAGGAGGA 57.369 50.000 0.00 0.00 0.00 3.71
32 33 3.341823 CAAAGACAATGGACAGAGGAGG 58.658 50.000 0.00 0.00 0.00 4.30
33 34 2.746362 GCAAAGACAATGGACAGAGGAG 59.254 50.000 0.00 0.00 0.00 3.69
34 35 2.783135 GCAAAGACAATGGACAGAGGA 58.217 47.619 0.00 0.00 0.00 3.71
35 36 1.466167 CGCAAAGACAATGGACAGAGG 59.534 52.381 0.00 0.00 0.00 3.69
36 37 1.135859 GCGCAAAGACAATGGACAGAG 60.136 52.381 0.30 0.00 0.00 3.35
37 38 0.874390 GCGCAAAGACAATGGACAGA 59.126 50.000 0.30 0.00 0.00 3.41
38 39 0.453282 CGCGCAAAGACAATGGACAG 60.453 55.000 8.75 0.00 0.00 3.51
39 40 0.882484 TCGCGCAAAGACAATGGACA 60.882 50.000 8.75 0.00 0.00 4.02
40 41 0.179215 CTCGCGCAAAGACAATGGAC 60.179 55.000 8.75 0.00 0.00 4.02
41 42 1.911293 GCTCGCGCAAAGACAATGGA 61.911 55.000 8.75 0.00 35.78 3.41
42 43 1.512734 GCTCGCGCAAAGACAATGG 60.513 57.895 8.75 0.00 35.78 3.16
43 44 1.207339 TGCTCGCGCAAAGACAATG 59.793 52.632 8.75 0.00 44.62 2.82
44 45 3.654201 TGCTCGCGCAAAGACAAT 58.346 50.000 8.75 0.00 44.62 2.71
56 57 2.125912 AACTAGCTGCGGTGCTCG 60.126 61.111 0.00 0.00 42.97 5.03
57 58 2.161486 CGAACTAGCTGCGGTGCTC 61.161 63.158 0.00 0.00 42.97 4.26
58 59 2.125912 CGAACTAGCTGCGGTGCT 60.126 61.111 0.00 0.00 46.11 4.40
59 60 3.854459 GCGAACTAGCTGCGGTGC 61.854 66.667 0.00 0.00 0.00 5.01
60 61 3.188786 GGCGAACTAGCTGCGGTG 61.189 66.667 0.00 0.00 37.29 4.94
61 62 4.796231 CGGCGAACTAGCTGCGGT 62.796 66.667 0.00 0.00 36.64 5.68
62 63 4.492160 TCGGCGAACTAGCTGCGG 62.492 66.667 7.35 0.00 42.92 5.69
63 64 3.248171 GTCGGCGAACTAGCTGCG 61.248 66.667 12.92 0.00 42.92 5.18
64 65 3.248171 CGTCGGCGAACTAGCTGC 61.248 66.667 12.92 0.00 42.92 5.25
65 66 2.579787 CCGTCGGCGAACTAGCTG 60.580 66.667 12.93 0.00 44.50 4.24
66 67 3.060615 ACCGTCGGCGAACTAGCT 61.061 61.111 12.93 0.00 41.33 3.32
67 68 2.879462 CACCGTCGGCGAACTAGC 60.879 66.667 12.93 0.00 41.33 3.42
68 69 1.513586 GACACCGTCGGCGAACTAG 60.514 63.158 12.93 5.05 41.33 2.57
69 70 2.562912 GACACCGTCGGCGAACTA 59.437 61.111 12.93 0.00 41.33 2.24
79 80 4.338539 GTGGACGAGCGACACCGT 62.339 66.667 0.00 0.00 42.17 4.83
81 82 4.034258 TCGTGGACGAGCGACACC 62.034 66.667 13.44 7.40 44.22 4.16
90 91 1.079819 AAGCATGGAGTCGTGGACG 60.080 57.895 0.00 0.00 37.67 4.79
91 92 0.320771 ACAAGCATGGAGTCGTGGAC 60.321 55.000 0.00 0.00 0.00 4.02
92 93 0.037326 GACAAGCATGGAGTCGTGGA 60.037 55.000 0.00 0.00 0.00 4.02
93 94 0.320683 TGACAAGCATGGAGTCGTGG 60.321 55.000 0.00 0.00 35.09 4.94
94 95 1.730501 ATGACAAGCATGGAGTCGTG 58.269 50.000 0.00 0.00 35.42 4.35
103 104 1.361668 GCGTCCGACATGACAAGCAT 61.362 55.000 0.00 0.00 37.85 3.79
104 105 2.027073 GCGTCCGACATGACAAGCA 61.027 57.895 0.00 0.00 34.88 3.91
105 106 2.740714 GGCGTCCGACATGACAAGC 61.741 63.158 0.00 0.00 34.88 4.01
106 107 1.374125 TGGCGTCCGACATGACAAG 60.374 57.895 0.00 0.00 34.88 3.16
107 108 1.666553 GTGGCGTCCGACATGACAA 60.667 57.895 0.00 0.00 34.62 3.18
108 109 2.048597 GTGGCGTCCGACATGACA 60.049 61.111 0.00 0.00 34.62 3.58
109 110 2.048597 TGTGGCGTCCGACATGAC 60.049 61.111 0.00 0.00 34.62 3.06
110 111 2.261361 CTGTGGCGTCCGACATGA 59.739 61.111 0.00 0.00 34.62 3.07
111 112 3.490759 GCTGTGGCGTCCGACATG 61.491 66.667 0.00 0.00 34.62 3.21
112 113 4.760047 GGCTGTGGCGTCCGACAT 62.760 66.667 0.00 0.00 39.81 3.06
116 117 3.371097 ATAGTGGCTGTGGCGTCCG 62.371 63.158 0.00 0.00 39.81 4.79
117 118 1.521681 GATAGTGGCTGTGGCGTCC 60.522 63.158 0.00 0.00 39.81 4.79
118 119 1.521681 GGATAGTGGCTGTGGCGTC 60.522 63.158 0.00 0.00 39.81 5.19
119 120 2.290287 TGGATAGTGGCTGTGGCGT 61.290 57.895 0.00 0.00 39.81 5.68
120 121 1.815421 GTGGATAGTGGCTGTGGCG 60.815 63.158 0.00 0.00 39.81 5.69
121 122 1.452108 GGTGGATAGTGGCTGTGGC 60.452 63.158 0.00 0.00 37.82 5.01
122 123 1.153369 CGGTGGATAGTGGCTGTGG 60.153 63.158 0.00 0.00 0.00 4.17
123 124 0.821517 TACGGTGGATAGTGGCTGTG 59.178 55.000 0.00 0.00 0.00 3.66
124 125 1.112113 CTACGGTGGATAGTGGCTGT 58.888 55.000 0.00 0.00 0.00 4.40
125 126 1.067212 GACTACGGTGGATAGTGGCTG 59.933 57.143 0.00 0.00 32.93 4.85
126 127 1.400737 GACTACGGTGGATAGTGGCT 58.599 55.000 0.00 0.00 32.93 4.75
127 128 0.030369 CGACTACGGTGGATAGTGGC 59.970 60.000 0.00 0.00 32.93 5.01
128 129 0.030369 GCGACTACGGTGGATAGTGG 59.970 60.000 0.00 0.00 40.15 4.00
129 130 0.030369 GGCGACTACGGTGGATAGTG 59.970 60.000 0.00 0.00 40.15 2.74
130 131 0.394762 TGGCGACTACGGTGGATAGT 60.395 55.000 0.00 0.00 40.15 2.12
131 132 0.959553 ATGGCGACTACGGTGGATAG 59.040 55.000 0.00 0.00 40.15 2.08
132 133 1.067974 CAATGGCGACTACGGTGGATA 59.932 52.381 0.00 0.00 40.15 2.59
133 134 0.179084 CAATGGCGACTACGGTGGAT 60.179 55.000 0.00 0.00 40.15 3.41
134 135 1.216977 CAATGGCGACTACGGTGGA 59.783 57.895 0.00 0.00 40.15 4.02
135 136 1.079405 ACAATGGCGACTACGGTGG 60.079 57.895 0.00 0.00 40.15 4.61
136 137 1.082117 GGACAATGGCGACTACGGTG 61.082 60.000 0.00 0.00 40.15 4.94
137 138 1.217244 GGACAATGGCGACTACGGT 59.783 57.895 0.00 0.00 40.15 4.83
138 139 1.876714 CGGACAATGGCGACTACGG 60.877 63.158 0.00 0.00 40.15 4.02
139 140 1.876714 CCGGACAATGGCGACTACG 60.877 63.158 0.00 0.00 42.93 3.51
140 141 2.171725 GCCGGACAATGGCGACTAC 61.172 63.158 5.05 0.00 43.70 2.73
141 142 2.185867 GCCGGACAATGGCGACTA 59.814 61.111 5.05 0.00 43.70 2.59
147 148 1.523711 AGTATGCGCCGGACAATGG 60.524 57.895 5.05 0.00 0.00 3.16
148 149 1.643292 CAGTATGCGCCGGACAATG 59.357 57.895 5.05 0.00 0.00 2.82
149 150 4.124910 CAGTATGCGCCGGACAAT 57.875 55.556 5.05 0.00 0.00 2.71
160 161 4.696479 AGGGGATAAGAAGTGCAGTATG 57.304 45.455 0.00 0.00 40.87 2.39
161 162 4.103311 GGAAGGGGATAAGAAGTGCAGTAT 59.897 45.833 0.00 0.00 0.00 2.12
162 163 3.454812 GGAAGGGGATAAGAAGTGCAGTA 59.545 47.826 0.00 0.00 0.00 2.74
163 164 2.239907 GGAAGGGGATAAGAAGTGCAGT 59.760 50.000 0.00 0.00 0.00 4.40
164 165 2.422093 GGGAAGGGGATAAGAAGTGCAG 60.422 54.545 0.00 0.00 0.00 4.41
165 166 1.564348 GGGAAGGGGATAAGAAGTGCA 59.436 52.381 0.00 0.00 0.00 4.57
166 167 1.847088 AGGGAAGGGGATAAGAAGTGC 59.153 52.381 0.00 0.00 0.00 4.40
167 168 3.135530 CAGAGGGAAGGGGATAAGAAGTG 59.864 52.174 0.00 0.00 0.00 3.16
168 169 3.388913 CAGAGGGAAGGGGATAAGAAGT 58.611 50.000 0.00 0.00 0.00 3.01
169 170 2.105649 GCAGAGGGAAGGGGATAAGAAG 59.894 54.545 0.00 0.00 0.00 2.85
170 171 2.127708 GCAGAGGGAAGGGGATAAGAA 58.872 52.381 0.00 0.00 0.00 2.52
171 172 1.295292 AGCAGAGGGAAGGGGATAAGA 59.705 52.381 0.00 0.00 0.00 2.10
172 173 1.813102 AGCAGAGGGAAGGGGATAAG 58.187 55.000 0.00 0.00 0.00 1.73
173 174 2.977808 CTAGCAGAGGGAAGGGGATAA 58.022 52.381 0.00 0.00 0.00 1.75
174 175 1.483307 GCTAGCAGAGGGAAGGGGATA 60.483 57.143 10.63 0.00 0.00 2.59
175 176 0.766288 GCTAGCAGAGGGAAGGGGAT 60.766 60.000 10.63 0.00 0.00 3.85
176 177 1.383248 GCTAGCAGAGGGAAGGGGA 60.383 63.158 10.63 0.00 0.00 4.81
177 178 0.985490 AAGCTAGCAGAGGGAAGGGG 60.985 60.000 18.83 0.00 0.00 4.79
178 179 0.915364 AAAGCTAGCAGAGGGAAGGG 59.085 55.000 18.83 0.00 0.00 3.95
179 180 1.556911 TGAAAGCTAGCAGAGGGAAGG 59.443 52.381 18.83 0.00 0.00 3.46
180 181 3.006247 GTTGAAAGCTAGCAGAGGGAAG 58.994 50.000 18.83 0.00 0.00 3.46
181 182 2.290323 GGTTGAAAGCTAGCAGAGGGAA 60.290 50.000 18.83 0.00 0.00 3.97
182 183 1.279271 GGTTGAAAGCTAGCAGAGGGA 59.721 52.381 18.83 0.00 0.00 4.20
183 184 1.003580 TGGTTGAAAGCTAGCAGAGGG 59.996 52.381 18.83 0.00 0.00 4.30
184 185 2.479566 TGGTTGAAAGCTAGCAGAGG 57.520 50.000 18.83 0.00 0.00 3.69
185 186 3.341823 ACATGGTTGAAAGCTAGCAGAG 58.658 45.455 18.83 0.00 31.33 3.35
186 187 3.008375 AGACATGGTTGAAAGCTAGCAGA 59.992 43.478 18.83 0.00 31.33 4.26
187 188 3.126514 CAGACATGGTTGAAAGCTAGCAG 59.873 47.826 18.83 0.00 31.33 4.24
188 189 3.076621 CAGACATGGTTGAAAGCTAGCA 58.923 45.455 18.83 0.00 0.00 3.49
189 190 2.159462 GCAGACATGGTTGAAAGCTAGC 60.159 50.000 6.62 6.62 0.00 3.42
190 191 3.341823 AGCAGACATGGTTGAAAGCTAG 58.658 45.455 0.00 0.00 31.66 3.42
191 192 3.423539 AGCAGACATGGTTGAAAGCTA 57.576 42.857 0.00 0.00 31.66 3.32
192 193 2.283145 AGCAGACATGGTTGAAAGCT 57.717 45.000 0.00 0.00 31.66 3.74
193 194 3.503748 ACTTAGCAGACATGGTTGAAAGC 59.496 43.478 0.00 0.00 38.36 3.51
194 195 4.756642 TCACTTAGCAGACATGGTTGAAAG 59.243 41.667 0.00 5.42 38.36 2.62
195 196 4.713553 TCACTTAGCAGACATGGTTGAAA 58.286 39.130 0.00 0.00 38.36 2.69
196 197 4.350368 TCACTTAGCAGACATGGTTGAA 57.650 40.909 0.00 0.00 38.36 2.69
197 198 4.202357 ACTTCACTTAGCAGACATGGTTGA 60.202 41.667 0.00 0.00 38.36 3.18
198 199 4.067896 ACTTCACTTAGCAGACATGGTTG 58.932 43.478 0.00 0.00 38.36 3.77
199 200 4.067896 CACTTCACTTAGCAGACATGGTT 58.932 43.478 0.00 0.00 38.36 3.67
200 201 3.668447 CACTTCACTTAGCAGACATGGT 58.332 45.455 0.00 0.00 40.99 3.55
201 202 2.417933 GCACTTCACTTAGCAGACATGG 59.582 50.000 0.00 0.00 0.00 3.66
202 203 3.332919 AGCACTTCACTTAGCAGACATG 58.667 45.455 0.00 0.00 0.00 3.21
203 204 3.692257 AGCACTTCACTTAGCAGACAT 57.308 42.857 0.00 0.00 0.00 3.06
204 205 4.039245 AGTTAGCACTTCACTTAGCAGACA 59.961 41.667 0.00 0.00 0.00 3.41
205 206 4.561105 AGTTAGCACTTCACTTAGCAGAC 58.439 43.478 0.00 0.00 0.00 3.51
206 207 4.524714 AGAGTTAGCACTTCACTTAGCAGA 59.475 41.667 0.00 0.00 31.22 4.26
207 208 4.815269 AGAGTTAGCACTTCACTTAGCAG 58.185 43.478 0.00 0.00 31.22 4.24
208 209 4.873746 AGAGTTAGCACTTCACTTAGCA 57.126 40.909 0.00 0.00 31.22 3.49
209 210 7.545965 TGATTAAGAGTTAGCACTTCACTTAGC 59.454 37.037 0.00 0.00 31.22 3.09
210 211 8.988064 TGATTAAGAGTTAGCACTTCACTTAG 57.012 34.615 0.00 0.00 31.22 2.18
212 213 9.372369 GTATGATTAAGAGTTAGCACTTCACTT 57.628 33.333 0.00 0.00 31.22 3.16
213 214 7.982354 GGTATGATTAAGAGTTAGCACTTCACT 59.018 37.037 0.00 0.00 31.22 3.41
214 215 7.982354 AGGTATGATTAAGAGTTAGCACTTCAC 59.018 37.037 0.00 0.00 31.22 3.18
215 216 8.079211 AGGTATGATTAAGAGTTAGCACTTCA 57.921 34.615 0.00 0.00 31.22 3.02
216 217 8.198109 TGAGGTATGATTAAGAGTTAGCACTTC 58.802 37.037 0.00 0.00 31.22 3.01
217 218 8.079211 TGAGGTATGATTAAGAGTTAGCACTT 57.921 34.615 0.00 0.00 31.22 3.16
218 219 7.661536 TGAGGTATGATTAAGAGTTAGCACT 57.338 36.000 0.00 0.00 35.17 4.40
219 220 7.095439 GCATGAGGTATGATTAAGAGTTAGCAC 60.095 40.741 0.00 0.00 39.21 4.40
220 221 6.931281 GCATGAGGTATGATTAAGAGTTAGCA 59.069 38.462 0.00 0.00 39.21 3.49
221 222 6.090088 CGCATGAGGTATGATTAAGAGTTAGC 59.910 42.308 0.00 0.00 39.21 3.09
222 223 7.115520 CACGCATGAGGTATGATTAAGAGTTAG 59.884 40.741 0.00 0.00 39.21 2.34
223 224 6.923508 CACGCATGAGGTATGATTAAGAGTTA 59.076 38.462 0.00 0.00 39.21 2.24
224 225 5.755375 CACGCATGAGGTATGATTAAGAGTT 59.245 40.000 0.00 0.00 39.21 3.01
225 226 5.292765 CACGCATGAGGTATGATTAAGAGT 58.707 41.667 0.00 0.00 39.21 3.24
226 227 4.151335 GCACGCATGAGGTATGATTAAGAG 59.849 45.833 0.00 0.00 39.21 2.85
227 228 4.058124 GCACGCATGAGGTATGATTAAGA 58.942 43.478 0.00 0.00 39.21 2.10
228 229 3.809279 TGCACGCATGAGGTATGATTAAG 59.191 43.478 0.00 0.00 39.21 1.85
229 230 3.802866 TGCACGCATGAGGTATGATTAA 58.197 40.909 0.00 0.00 39.21 1.40
230 231 3.467374 TGCACGCATGAGGTATGATTA 57.533 42.857 0.00 0.00 39.21 1.75
231 232 2.330440 TGCACGCATGAGGTATGATT 57.670 45.000 0.00 0.00 39.21 2.57
232 233 1.942657 GTTGCACGCATGAGGTATGAT 59.057 47.619 0.00 0.00 39.21 2.45
233 234 1.368641 GTTGCACGCATGAGGTATGA 58.631 50.000 0.00 0.00 39.21 2.15
234 235 0.378257 GGTTGCACGCATGAGGTATG 59.622 55.000 0.00 0.00 39.88 2.39
235 236 0.035534 TGGTTGCACGCATGAGGTAT 60.036 50.000 0.00 0.00 0.00 2.73
236 237 0.250510 TTGGTTGCACGCATGAGGTA 60.251 50.000 0.00 0.00 0.00 3.08
237 238 1.106351 TTTGGTTGCACGCATGAGGT 61.106 50.000 0.00 0.00 0.00 3.85
238 239 0.664166 GTTTGGTTGCACGCATGAGG 60.664 55.000 0.00 0.00 0.00 3.86
239 240 0.030504 TGTTTGGTTGCACGCATGAG 59.969 50.000 0.00 0.00 0.00 2.90
240 241 0.248825 GTGTTTGGTTGCACGCATGA 60.249 50.000 0.00 0.00 0.00 3.07
241 242 1.214373 GGTGTTTGGTTGCACGCATG 61.214 55.000 0.00 0.00 36.54 4.06
242 243 1.067250 GGTGTTTGGTTGCACGCAT 59.933 52.632 0.00 0.00 36.54 4.73
243 244 2.492090 GGTGTTTGGTTGCACGCA 59.508 55.556 0.00 0.00 36.54 5.24
244 245 2.653766 CGGTGTTTGGTTGCACGC 60.654 61.111 0.00 0.00 36.54 5.34
245 246 1.010125 CTCGGTGTTTGGTTGCACG 60.010 57.895 0.00 0.00 36.54 5.34
246 247 0.454196 AACTCGGTGTTTGGTTGCAC 59.546 50.000 0.00 0.00 34.84 4.57
247 248 0.736053 GAACTCGGTGTTTGGTTGCA 59.264 50.000 0.00 0.00 39.30 4.08
248 249 0.736053 TGAACTCGGTGTTTGGTTGC 59.264 50.000 0.00 0.00 39.30 4.17
249 250 2.357637 ACATGAACTCGGTGTTTGGTTG 59.642 45.455 0.00 0.00 39.30 3.77
250 251 2.357637 CACATGAACTCGGTGTTTGGTT 59.642 45.455 0.00 0.00 39.30 3.67
251 252 1.946768 CACATGAACTCGGTGTTTGGT 59.053 47.619 0.00 0.00 39.30 3.67
252 253 1.334960 GCACATGAACTCGGTGTTTGG 60.335 52.381 0.00 0.00 39.30 3.28
253 254 1.334960 GGCACATGAACTCGGTGTTTG 60.335 52.381 0.00 0.00 39.30 2.93
254 255 0.951558 GGCACATGAACTCGGTGTTT 59.048 50.000 0.00 0.00 39.30 2.83
255 256 1.227999 CGGCACATGAACTCGGTGTT 61.228 55.000 0.00 0.00 42.38 3.32
256 257 1.667830 CGGCACATGAACTCGGTGT 60.668 57.895 0.00 0.00 35.05 4.16
257 258 3.027170 GCGGCACATGAACTCGGTG 62.027 63.158 0.00 0.00 35.68 4.94
258 259 2.731691 AAGCGGCACATGAACTCGGT 62.732 55.000 0.00 0.45 0.00 4.69
259 260 2.034879 AAGCGGCACATGAACTCGG 61.035 57.895 0.00 0.00 0.00 4.63
260 261 1.133253 CAAGCGGCACATGAACTCG 59.867 57.895 0.00 0.00 0.00 4.18
261 262 1.503542 CCAAGCGGCACATGAACTC 59.496 57.895 0.00 0.00 0.00 3.01
262 263 1.973281 CCCAAGCGGCACATGAACT 60.973 57.895 0.00 0.00 0.00 3.01
263 264 2.568090 CCCAAGCGGCACATGAAC 59.432 61.111 0.00 0.00 0.00 3.18
272 273 4.137872 CTGCATTGGCCCAAGCGG 62.138 66.667 1.16 7.28 41.24 5.52
273 274 4.137872 CCTGCATTGGCCCAAGCG 62.138 66.667 1.16 0.00 41.24 4.68
274 275 4.462280 GCCTGCATTGGCCCAAGC 62.462 66.667 1.16 6.64 46.82 4.01
281 282 3.331478 TTATTTGGTTGCCTGCATTGG 57.669 42.857 0.00 0.00 0.00 3.16
282 283 4.152759 CACTTTATTTGGTTGCCTGCATTG 59.847 41.667 0.00 0.00 0.00 2.82
283 284 4.317488 CACTTTATTTGGTTGCCTGCATT 58.683 39.130 0.00 0.00 0.00 3.56
284 285 3.865684 GCACTTTATTTGGTTGCCTGCAT 60.866 43.478 0.00 0.00 0.00 3.96
285 286 2.547642 GCACTTTATTTGGTTGCCTGCA 60.548 45.455 0.00 0.00 0.00 4.41
286 287 2.068519 GCACTTTATTTGGTTGCCTGC 58.931 47.619 0.00 0.00 0.00 4.85
287 288 3.059166 GTGCACTTTATTTGGTTGCCTG 58.941 45.455 10.32 0.00 0.00 4.85
288 289 2.288152 CGTGCACTTTATTTGGTTGCCT 60.288 45.455 16.19 0.00 0.00 4.75
289 290 2.058057 CGTGCACTTTATTTGGTTGCC 58.942 47.619 16.19 0.00 0.00 4.52
290 291 2.470999 CACGTGCACTTTATTTGGTTGC 59.529 45.455 16.19 0.00 0.00 4.17
291 292 2.470999 GCACGTGCACTTTATTTGGTTG 59.529 45.455 34.52 0.00 41.59 3.77
292 293 2.738135 GCACGTGCACTTTATTTGGTT 58.262 42.857 34.52 0.00 41.59 3.67
293 294 1.334599 CGCACGTGCACTTTATTTGGT 60.335 47.619 37.03 0.00 42.21 3.67
294 295 1.326576 CGCACGTGCACTTTATTTGG 58.673 50.000 37.03 15.14 42.21 3.28
295 296 2.031037 ACGCACGTGCACTTTATTTG 57.969 45.000 37.03 20.86 42.21 2.32
296 297 4.413495 AATACGCACGTGCACTTTATTT 57.587 36.364 37.03 18.07 42.21 1.40
297 298 4.201744 GGTAATACGCACGTGCACTTTATT 60.202 41.667 37.03 29.60 42.21 1.40
298 299 3.307782 GGTAATACGCACGTGCACTTTAT 59.692 43.478 37.03 23.55 42.21 1.40
299 300 2.667481 GGTAATACGCACGTGCACTTTA 59.333 45.455 37.03 25.90 42.21 1.85
300 301 1.461897 GGTAATACGCACGTGCACTTT 59.538 47.619 37.03 26.85 42.21 2.66
301 302 1.073177 GGTAATACGCACGTGCACTT 58.927 50.000 37.03 27.04 42.21 3.16
302 303 0.245539 AGGTAATACGCACGTGCACT 59.754 50.000 37.03 24.39 42.21 4.40
303 304 1.912001 TAGGTAATACGCACGTGCAC 58.088 50.000 37.03 26.68 42.21 4.57
304 305 2.651135 TTAGGTAATACGCACGTGCA 57.349 45.000 37.03 21.62 42.21 4.57
305 306 2.348218 GCATTAGGTAATACGCACGTGC 60.348 50.000 30.42 30.42 37.78 5.34
306 307 2.861335 TGCATTAGGTAATACGCACGTG 59.139 45.455 12.28 12.28 0.00 4.49
307 308 3.120792 CTGCATTAGGTAATACGCACGT 58.879 45.455 0.00 0.00 0.00 4.49
308 309 2.475111 CCTGCATTAGGTAATACGCACG 59.525 50.000 0.00 0.00 42.00 5.34
309 310 2.806244 CCCTGCATTAGGTAATACGCAC 59.194 50.000 0.00 0.00 45.80 5.34
310 311 2.701423 TCCCTGCATTAGGTAATACGCA 59.299 45.455 0.00 0.00 45.80 5.24
311 312 3.064931 GTCCCTGCATTAGGTAATACGC 58.935 50.000 0.00 0.00 45.80 4.42
312 313 3.556423 GGGTCCCTGCATTAGGTAATACG 60.556 52.174 0.00 0.00 45.80 3.06
313 314 3.651423 AGGGTCCCTGCATTAGGTAATAC 59.349 47.826 10.61 0.00 45.80 1.89
314 315 3.949430 AGGGTCCCTGCATTAGGTAATA 58.051 45.455 10.61 0.00 45.80 0.98
315 316 2.789219 AGGGTCCCTGCATTAGGTAAT 58.211 47.619 10.61 0.00 45.80 1.89
316 317 2.280308 AGGGTCCCTGCATTAGGTAA 57.720 50.000 10.61 0.00 45.80 2.85
317 318 3.424724 TTAGGGTCCCTGCATTAGGTA 57.575 47.619 21.83 0.00 45.80 3.08
318 319 2.280308 TTAGGGTCCCTGCATTAGGT 57.720 50.000 21.83 0.00 45.80 3.08
319 320 3.117512 ACATTTAGGGTCCCTGCATTAGG 60.118 47.826 21.83 5.99 46.88 2.69
320 321 4.170468 ACATTTAGGGTCCCTGCATTAG 57.830 45.455 21.83 7.91 34.61 1.73
321 322 4.104102 CCTACATTTAGGGTCCCTGCATTA 59.896 45.833 21.83 0.00 41.41 1.90
322 323 3.117512 CCTACATTTAGGGTCCCTGCATT 60.118 47.826 21.83 3.51 41.41 3.56
323 324 2.443255 CCTACATTTAGGGTCCCTGCAT 59.557 50.000 21.83 9.22 41.41 3.96
324 325 1.843851 CCTACATTTAGGGTCCCTGCA 59.156 52.381 21.83 7.02 41.41 4.41
325 326 1.477014 GCCTACATTTAGGGTCCCTGC 60.477 57.143 21.83 8.80 44.91 4.85
326 327 1.843851 TGCCTACATTTAGGGTCCCTG 59.156 52.381 21.83 7.03 44.91 4.45
327 328 2.241430 GTTGCCTACATTTAGGGTCCCT 59.759 50.000 16.73 16.73 44.91 4.20
328 329 2.651455 GTTGCCTACATTTAGGGTCCC 58.349 52.381 7.05 0.00 44.91 4.46
329 330 2.025699 TGGTTGCCTACATTTAGGGTCC 60.026 50.000 7.05 0.00 44.91 4.46
330 331 3.359695 TGGTTGCCTACATTTAGGGTC 57.640 47.619 7.05 0.00 44.91 4.46
331 332 3.818295 TTGGTTGCCTACATTTAGGGT 57.182 42.857 7.05 0.00 44.91 4.34
332 333 3.829601 TGTTTGGTTGCCTACATTTAGGG 59.170 43.478 7.05 0.00 44.91 3.53
334 335 6.084326 AGTTGTTTGGTTGCCTACATTTAG 57.916 37.500 0.00 0.00 0.00 1.85
335 336 5.594725 TGAGTTGTTTGGTTGCCTACATTTA 59.405 36.000 0.00 0.00 0.00 1.40
336 337 4.404073 TGAGTTGTTTGGTTGCCTACATTT 59.596 37.500 0.00 0.00 0.00 2.32
337 338 3.957497 TGAGTTGTTTGGTTGCCTACATT 59.043 39.130 0.00 0.00 0.00 2.71
338 339 3.317993 GTGAGTTGTTTGGTTGCCTACAT 59.682 43.478 0.00 0.00 0.00 2.29
339 340 2.685897 GTGAGTTGTTTGGTTGCCTACA 59.314 45.455 0.00 0.00 0.00 2.74
340 341 2.685897 TGTGAGTTGTTTGGTTGCCTAC 59.314 45.455 0.00 0.00 0.00 3.18
341 342 2.948979 CTGTGAGTTGTTTGGTTGCCTA 59.051 45.455 0.00 0.00 0.00 3.93
342 343 1.750778 CTGTGAGTTGTTTGGTTGCCT 59.249 47.619 0.00 0.00 0.00 4.75
343 344 1.748493 TCTGTGAGTTGTTTGGTTGCC 59.252 47.619 0.00 0.00 0.00 4.52
344 345 3.181487 ACATCTGTGAGTTGTTTGGTTGC 60.181 43.478 0.00 0.00 0.00 4.17
345 346 4.601019 GACATCTGTGAGTTGTTTGGTTG 58.399 43.478 0.00 0.00 29.00 3.77
346 347 3.312421 CGACATCTGTGAGTTGTTTGGTT 59.688 43.478 0.00 0.00 29.00 3.67
347 348 2.872245 CGACATCTGTGAGTTGTTTGGT 59.128 45.455 0.00 0.00 29.00 3.67
348 349 2.349817 GCGACATCTGTGAGTTGTTTGG 60.350 50.000 0.00 0.00 29.00 3.28
349 350 2.660094 CGCGACATCTGTGAGTTGTTTG 60.660 50.000 0.00 0.00 29.00 2.93
350 351 1.526887 CGCGACATCTGTGAGTTGTTT 59.473 47.619 0.00 0.00 29.00 2.83
351 352 1.139989 CGCGACATCTGTGAGTTGTT 58.860 50.000 0.00 0.00 29.00 2.83
352 353 0.032130 ACGCGACATCTGTGAGTTGT 59.968 50.000 15.93 0.00 31.33 3.32
353 354 1.977188 TACGCGACATCTGTGAGTTG 58.023 50.000 15.93 0.00 0.00 3.16
354 355 2.163613 TCATACGCGACATCTGTGAGTT 59.836 45.455 15.93 0.00 0.00 3.01
355 356 1.743394 TCATACGCGACATCTGTGAGT 59.257 47.619 15.93 0.00 0.00 3.41
356 357 2.379732 CTCATACGCGACATCTGTGAG 58.620 52.381 15.93 9.69 0.00 3.51
357 358 1.065551 CCTCATACGCGACATCTGTGA 59.934 52.381 15.93 2.60 0.00 3.58
358 359 1.481240 CCTCATACGCGACATCTGTG 58.519 55.000 15.93 0.00 0.00 3.66
359 360 0.249073 GCCTCATACGCGACATCTGT 60.249 55.000 15.93 0.00 0.00 3.41
360 361 0.031314 AGCCTCATACGCGACATCTG 59.969 55.000 15.93 2.26 0.00 2.90
361 362 0.031314 CAGCCTCATACGCGACATCT 59.969 55.000 15.93 0.00 0.00 2.90
362 363 0.249073 ACAGCCTCATACGCGACATC 60.249 55.000 15.93 0.00 0.00 3.06
363 364 0.175760 AACAGCCTCATACGCGACAT 59.824 50.000 15.93 1.87 0.00 3.06
364 365 0.037697 AAACAGCCTCATACGCGACA 60.038 50.000 15.93 0.00 0.00 4.35
365 366 1.076332 AAAACAGCCTCATACGCGAC 58.924 50.000 15.93 0.00 0.00 5.19
366 367 1.803334 AAAAACAGCCTCATACGCGA 58.197 45.000 15.93 0.00 0.00 5.87
382 383 1.494721 ACCCAGTCTGGCTCTGAAAAA 59.505 47.619 13.99 0.00 35.79 1.94
383 384 1.140312 ACCCAGTCTGGCTCTGAAAA 58.860 50.000 13.99 0.00 35.79 2.29
384 385 1.140312 AACCCAGTCTGGCTCTGAAA 58.860 50.000 13.99 0.00 35.79 2.69
385 386 0.397941 CAACCCAGTCTGGCTCTGAA 59.602 55.000 13.99 0.00 35.79 3.02
386 387 1.483595 CCAACCCAGTCTGGCTCTGA 61.484 60.000 13.99 0.00 35.79 3.27
387 388 1.002868 CCAACCCAGTCTGGCTCTG 60.003 63.158 13.99 9.36 35.79 3.35
388 389 2.227036 CCCAACCCAGTCTGGCTCT 61.227 63.158 13.99 0.00 35.79 4.09
389 390 1.566298 ATCCCAACCCAGTCTGGCTC 61.566 60.000 13.99 0.00 35.79 4.70
390 391 1.542375 ATCCCAACCCAGTCTGGCT 60.542 57.895 13.99 0.00 35.79 4.75
391 392 1.379044 CATCCCAACCCAGTCTGGC 60.379 63.158 13.99 0.00 35.79 4.85
392 393 0.322816 CACATCCCAACCCAGTCTGG 60.323 60.000 12.40 12.40 37.25 3.86
393 394 0.401738 ACACATCCCAACCCAGTCTG 59.598 55.000 0.00 0.00 0.00 3.51
394 395 2.038863 TACACATCCCAACCCAGTCT 57.961 50.000 0.00 0.00 0.00 3.24
395 396 2.643551 CATACACATCCCAACCCAGTC 58.356 52.381 0.00 0.00 0.00 3.51
396 397 1.340991 GCATACACATCCCAACCCAGT 60.341 52.381 0.00 0.00 0.00 4.00
397 398 1.340893 TGCATACACATCCCAACCCAG 60.341 52.381 0.00 0.00 0.00 4.45
398 399 0.701147 TGCATACACATCCCAACCCA 59.299 50.000 0.00 0.00 0.00 4.51
399 400 1.476488 GTTGCATACACATCCCAACCC 59.524 52.381 0.00 0.00 31.96 4.11
400 401 2.166829 TGTTGCATACACATCCCAACC 58.833 47.619 0.00 0.00 36.00 3.77
410 411 8.560355 AATGAATAGTAGTTGTGTTGCATACA 57.440 30.769 0.58 0.58 0.00 2.29
411 412 9.916397 GTAATGAATAGTAGTTGTGTTGCATAC 57.084 33.333 0.00 0.00 0.00 2.39
412 413 8.813282 CGTAATGAATAGTAGTTGTGTTGCATA 58.187 33.333 0.00 0.00 0.00 3.14
413 414 7.201609 CCGTAATGAATAGTAGTTGTGTTGCAT 60.202 37.037 0.00 0.00 0.00 3.96
414 415 6.091577 CCGTAATGAATAGTAGTTGTGTTGCA 59.908 38.462 0.00 0.00 0.00 4.08
415 416 6.475207 CCGTAATGAATAGTAGTTGTGTTGC 58.525 40.000 0.00 0.00 0.00 4.17
416 417 6.091577 TGCCGTAATGAATAGTAGTTGTGTTG 59.908 38.462 0.00 0.00 0.00 3.33
417 418 6.167685 TGCCGTAATGAATAGTAGTTGTGTT 58.832 36.000 0.00 0.00 0.00 3.32
418 419 5.726397 TGCCGTAATGAATAGTAGTTGTGT 58.274 37.500 0.00 0.00 0.00 3.72
419 420 6.456449 GGTTGCCGTAATGAATAGTAGTTGTG 60.456 42.308 0.00 0.00 0.00 3.33
420 421 5.583457 GGTTGCCGTAATGAATAGTAGTTGT 59.417 40.000 0.00 0.00 0.00 3.32
421 422 5.583061 TGGTTGCCGTAATGAATAGTAGTTG 59.417 40.000 0.00 0.00 0.00 3.16
422 423 5.736813 TGGTTGCCGTAATGAATAGTAGTT 58.263 37.500 0.00 0.00 0.00 2.24
423 424 5.347620 TGGTTGCCGTAATGAATAGTAGT 57.652 39.130 0.00 0.00 0.00 2.73
424 425 6.092944 TGTTTGGTTGCCGTAATGAATAGTAG 59.907 38.462 0.00 0.00 0.00 2.57
425 426 5.938710 TGTTTGGTTGCCGTAATGAATAGTA 59.061 36.000 0.00 0.00 0.00 1.82
426 427 4.762765 TGTTTGGTTGCCGTAATGAATAGT 59.237 37.500 0.00 0.00 0.00 2.12
427 428 5.092781 GTGTTTGGTTGCCGTAATGAATAG 58.907 41.667 0.00 0.00 0.00 1.73
428 429 4.378563 CGTGTTTGGTTGCCGTAATGAATA 60.379 41.667 0.00 0.00 0.00 1.75
429 430 3.610585 CGTGTTTGGTTGCCGTAATGAAT 60.611 43.478 0.00 0.00 0.00 2.57
430 431 2.287069 CGTGTTTGGTTGCCGTAATGAA 60.287 45.455 0.00 0.00 0.00 2.57
431 432 1.264557 CGTGTTTGGTTGCCGTAATGA 59.735 47.619 0.00 0.00 0.00 2.57
432 433 1.680668 CGTGTTTGGTTGCCGTAATG 58.319 50.000 0.00 0.00 0.00 1.90
433 434 0.039888 GCGTGTTTGGTTGCCGTAAT 60.040 50.000 0.00 0.00 0.00 1.89
434 435 1.355916 GCGTGTTTGGTTGCCGTAA 59.644 52.632 0.00 0.00 0.00 3.18
435 436 2.883468 CGCGTGTTTGGTTGCCGTA 61.883 57.895 0.00 0.00 0.00 4.02
436 437 4.244802 CGCGTGTTTGGTTGCCGT 62.245 61.111 0.00 0.00 0.00 5.68
438 439 3.839642 ATGCGCGTGTTTGGTTGCC 62.840 57.895 8.43 0.00 0.00 4.52
439 440 2.354539 ATGCGCGTGTTTGGTTGC 60.355 55.556 8.43 0.00 0.00 4.17
440 441 0.040870 TACATGCGCGTGTTTGGTTG 60.041 50.000 37.50 9.19 33.62 3.77
441 442 0.663688 TTACATGCGCGTGTTTGGTT 59.336 45.000 37.50 16.33 33.62 3.67
442 443 0.663688 TTTACATGCGCGTGTTTGGT 59.336 45.000 37.50 17.07 33.62 3.67
443 444 1.975837 ATTTACATGCGCGTGTTTGG 58.024 45.000 37.50 11.54 33.62 3.28
444 445 3.538003 CAGTATTTACATGCGCGTGTTTG 59.462 43.478 37.50 21.46 33.62 2.93
445 446 3.433957 TCAGTATTTACATGCGCGTGTTT 59.566 39.130 37.50 24.39 33.62 2.83
446 447 2.997303 TCAGTATTTACATGCGCGTGTT 59.003 40.909 37.50 23.43 33.62 3.32
447 448 2.603110 CTCAGTATTTACATGCGCGTGT 59.397 45.455 35.14 35.14 36.13 4.49
448 449 2.857748 TCTCAGTATTTACATGCGCGTG 59.142 45.455 27.53 27.53 0.00 5.34
449 450 3.159353 TCTCAGTATTTACATGCGCGT 57.841 42.857 8.43 0.00 0.00 6.01
450 451 3.120889 CCATCTCAGTATTTACATGCGCG 60.121 47.826 0.00 0.00 0.00 6.86
451 452 3.187227 CCCATCTCAGTATTTACATGCGC 59.813 47.826 0.00 0.00 0.00 6.09
452 453 3.748048 CCCCATCTCAGTATTTACATGCG 59.252 47.826 0.00 0.00 0.00 4.73
453 454 4.973168 TCCCCATCTCAGTATTTACATGC 58.027 43.478 0.00 0.00 0.00 4.06
454 455 6.268617 TCTCTCCCCATCTCAGTATTTACATG 59.731 42.308 0.00 0.00 0.00 3.21
455 456 6.385443 TCTCTCCCCATCTCAGTATTTACAT 58.615 40.000 0.00 0.00 0.00 2.29
456 457 5.777449 TCTCTCCCCATCTCAGTATTTACA 58.223 41.667 0.00 0.00 0.00 2.41
457 458 6.071984 TCTCTCTCCCCATCTCAGTATTTAC 58.928 44.000 0.00 0.00 0.00 2.01
458 459 6.281190 TCTCTCTCCCCATCTCAGTATTTA 57.719 41.667 0.00 0.00 0.00 1.40
459 460 5.149584 TCTCTCTCCCCATCTCAGTATTT 57.850 43.478 0.00 0.00 0.00 1.40
460 461 4.823364 TCTCTCTCCCCATCTCAGTATT 57.177 45.455 0.00 0.00 0.00 1.89
461 462 4.823364 TTCTCTCTCCCCATCTCAGTAT 57.177 45.455 0.00 0.00 0.00 2.12
462 463 4.609866 TTTCTCTCTCCCCATCTCAGTA 57.390 45.455 0.00 0.00 0.00 2.74
463 464 3.481559 TTTCTCTCTCCCCATCTCAGT 57.518 47.619 0.00 0.00 0.00 3.41
464 465 5.365025 TGTATTTTCTCTCTCCCCATCTCAG 59.635 44.000 0.00 0.00 0.00 3.35
465 466 5.280499 TGTATTTTCTCTCTCCCCATCTCA 58.720 41.667 0.00 0.00 0.00 3.27
466 467 5.878406 TGTATTTTCTCTCTCCCCATCTC 57.122 43.478 0.00 0.00 0.00 2.75
467 468 5.966935 TCTTGTATTTTCTCTCTCCCCATCT 59.033 40.000 0.00 0.00 0.00 2.90
468 469 6.098982 TCTCTTGTATTTTCTCTCTCCCCATC 59.901 42.308 0.00 0.00 0.00 3.51
469 470 5.966935 TCTCTTGTATTTTCTCTCTCCCCAT 59.033 40.000 0.00 0.00 0.00 4.00
470 471 5.342017 TCTCTTGTATTTTCTCTCTCCCCA 58.658 41.667 0.00 0.00 0.00 4.96
471 472 5.941555 TCTCTTGTATTTTCTCTCTCCCC 57.058 43.478 0.00 0.00 0.00 4.81
472 473 8.800370 ATTTTCTCTTGTATTTTCTCTCTCCC 57.200 34.615 0.00 0.00 0.00 4.30
520 521 9.956640 AGAAACTGTGATAAGAGATCATCTTTT 57.043 29.630 11.16 0.00 46.49 2.27
521 522 9.598517 GAGAAACTGTGATAAGAGATCATCTTT 57.401 33.333 11.16 0.00 46.49 2.52
523 524 8.537728 AGAGAAACTGTGATAAGAGATCATCT 57.462 34.615 0.00 0.00 41.27 2.90
524 525 8.412456 TGAGAGAAACTGTGATAAGAGATCATC 58.588 37.037 0.00 0.00 0.00 2.92
525 526 8.303780 TGAGAGAAACTGTGATAAGAGATCAT 57.696 34.615 0.00 0.00 0.00 2.45
526 527 7.709149 TGAGAGAAACTGTGATAAGAGATCA 57.291 36.000 0.00 0.00 0.00 2.92
527 528 8.412456 TGATGAGAGAAACTGTGATAAGAGATC 58.588 37.037 0.00 0.00 0.00 2.75
528 529 8.303780 TGATGAGAGAAACTGTGATAAGAGAT 57.696 34.615 0.00 0.00 0.00 2.75
529 530 7.709149 TGATGAGAGAAACTGTGATAAGAGA 57.291 36.000 0.00 0.00 0.00 3.10
536 537 9.538508 CAACATATATGATGAGAGAAACTGTGA 57.461 33.333 19.63 0.00 32.98 3.58
537 538 8.771766 CCAACATATATGATGAGAGAAACTGTG 58.228 37.037 21.06 0.29 32.98 3.66
538 539 7.935755 CCCAACATATATGATGAGAGAAACTGT 59.064 37.037 21.06 0.00 32.98 3.55
539 540 8.152898 TCCCAACATATATGATGAGAGAAACTG 58.847 37.037 21.06 4.44 32.98 3.16
540 541 8.153550 GTCCCAACATATATGATGAGAGAAACT 58.846 37.037 21.06 0.00 32.98 2.66
541 542 7.933577 TGTCCCAACATATATGATGAGAGAAAC 59.066 37.037 21.06 11.19 32.98 2.78
542 543 8.033178 TGTCCCAACATATATGATGAGAGAAA 57.967 34.615 21.06 9.44 32.98 2.52
543 544 7.616528 TGTCCCAACATATATGATGAGAGAA 57.383 36.000 21.06 5.45 32.98 2.87
544 545 7.445121 GTTGTCCCAACATATATGATGAGAGA 58.555 38.462 21.06 11.38 34.73 3.10
545 546 6.652481 GGTTGTCCCAACATATATGATGAGAG 59.348 42.308 21.06 11.24 34.73 3.20
546 547 6.329986 AGGTTGTCCCAACATATATGATGAGA 59.670 38.462 21.06 12.70 34.73 3.27
547 548 6.537355 AGGTTGTCCCAACATATATGATGAG 58.463 40.000 21.06 10.69 34.73 2.90
548 549 6.514012 AGGTTGTCCCAACATATATGATGA 57.486 37.500 21.06 8.71 34.73 2.92
549 550 7.939039 ACTAAGGTTGTCCCAACATATATGATG 59.061 37.037 19.63 16.77 34.73 3.07
550 551 8.045720 ACTAAGGTTGTCCCAACATATATGAT 57.954 34.615 19.63 4.54 34.73 2.45
551 552 7.126573 TGACTAAGGTTGTCCCAACATATATGA 59.873 37.037 19.63 0.00 34.73 2.15
552 553 7.279615 TGACTAAGGTTGTCCCAACATATATG 58.720 38.462 11.29 11.29 34.73 1.78
553 554 7.446106 TGACTAAGGTTGTCCCAACATATAT 57.554 36.000 9.12 0.00 34.73 0.86
554 555 6.877668 TGACTAAGGTTGTCCCAACATATA 57.122 37.500 9.12 0.00 34.73 0.86
555 556 5.772393 TGACTAAGGTTGTCCCAACATAT 57.228 39.130 9.12 0.00 34.73 1.78
556 557 5.570205 TTGACTAAGGTTGTCCCAACATA 57.430 39.130 9.12 1.78 34.73 2.29
557 558 4.447138 TTGACTAAGGTTGTCCCAACAT 57.553 40.909 9.12 0.00 34.73 2.71
558 559 3.935818 TTGACTAAGGTTGTCCCAACA 57.064 42.857 9.12 0.00 34.66 3.33
559 560 4.204799 AGTTTGACTAAGGTTGTCCCAAC 58.795 43.478 0.00 0.00 34.66 3.77
560 561 4.513406 AGTTTGACTAAGGTTGTCCCAA 57.487 40.909 0.00 0.00 34.66 4.12
561 562 4.080243 TCAAGTTTGACTAAGGTTGTCCCA 60.080 41.667 0.00 0.00 33.83 4.37
562 563 4.457466 TCAAGTTTGACTAAGGTTGTCCC 58.543 43.478 0.00 0.00 33.83 4.46
563 564 5.220989 GGTTCAAGTTTGACTAAGGTTGTCC 60.221 44.000 0.00 0.00 36.83 4.02
564 565 5.355910 TGGTTCAAGTTTGACTAAGGTTGTC 59.644 40.000 0.00 0.00 36.83 3.18
565 566 5.258051 TGGTTCAAGTTTGACTAAGGTTGT 58.742 37.500 0.00 0.00 36.83 3.32
566 567 5.357032 ACTGGTTCAAGTTTGACTAAGGTTG 59.643 40.000 0.00 0.00 36.83 3.77
567 568 5.506708 ACTGGTTCAAGTTTGACTAAGGTT 58.493 37.500 0.00 0.00 36.83 3.50
568 569 5.104485 AGACTGGTTCAAGTTTGACTAAGGT 60.104 40.000 0.00 0.00 36.83 3.50
569 570 5.237344 CAGACTGGTTCAAGTTTGACTAAGG 59.763 44.000 0.00 0.00 34.94 2.69
570 571 6.049149 TCAGACTGGTTCAAGTTTGACTAAG 58.951 40.000 1.81 0.00 36.63 2.18
571 572 5.984725 TCAGACTGGTTCAAGTTTGACTAA 58.015 37.500 1.81 0.00 36.63 2.24
572 573 5.607939 TCAGACTGGTTCAAGTTTGACTA 57.392 39.130 1.81 0.00 36.63 2.59
573 574 4.487714 TCAGACTGGTTCAAGTTTGACT 57.512 40.909 1.81 0.00 36.63 3.41
575 576 4.442706 GAGTCAGACTGGTTCAAGTTTGA 58.557 43.478 8.15 0.00 38.55 2.69
606 607 0.675837 GTCTACCAGGCCCGTTTTCC 60.676 60.000 0.00 0.00 0.00 3.13
837 893 3.187432 GCCGATATTTTAAGAGGCAGAGC 59.813 47.826 0.00 0.00 43.65 4.09
838 894 4.999751 GCCGATATTTTAAGAGGCAGAG 57.000 45.455 0.00 0.00 43.65 3.35
842 898 2.223377 CGGTGCCGATATTTTAAGAGGC 59.777 50.000 4.35 0.00 44.38 4.70
843 899 3.724374 TCGGTGCCGATATTTTAAGAGG 58.276 45.455 9.48 0.00 44.01 3.69
868 924 2.711547 GGCCCTTGGGTAATCTGTATCT 59.288 50.000 7.61 0.00 0.00 1.98
876 932 4.499633 CGGCGGCCCTTGGGTAAT 62.500 66.667 14.55 0.00 0.00 1.89
896 956 1.079336 TGCTGTGCTCTGCTGCTAG 60.079 57.895 16.89 0.00 38.91 3.42
994 1076 4.738998 CTTGGGTGCCATGCGGGA 62.739 66.667 0.00 0.00 40.01 5.14
1736 1818 0.453793 CAGGATGAGAAGCTCGTCGT 59.546 55.000 9.75 7.96 44.74 4.34
1950 2032 2.983030 TCATGCGGGGTGTGCAAC 60.983 61.111 0.00 0.00 46.87 4.17
1998 2080 0.251165 CACTACCAACCAACCCCCAG 60.251 60.000 0.00 0.00 0.00 4.45
2097 2179 4.422840 GCTGACTCTCCATATCATCATCG 58.577 47.826 0.00 0.00 0.00 3.84
2226 2308 1.500783 CCTTCCCCTTCTCAAGCCCA 61.501 60.000 0.00 0.00 0.00 5.36
2349 2431 0.179081 GCTTTTCCTCTATCGCCCGT 60.179 55.000 0.00 0.00 0.00 5.28
2355 2437 3.709141 ACCTCCTCAGCTTTTCCTCTATC 59.291 47.826 0.00 0.00 0.00 2.08
2358 2440 2.037385 ACCTCCTCAGCTTTTCCTCT 57.963 50.000 0.00 0.00 0.00 3.69
2725 2807 3.261580 CACAGCATTCACAACGAGGATA 58.738 45.455 0.00 0.00 0.00 2.59
2807 2889 4.124238 GCGTAAGACAATAGCACCCAATA 58.876 43.478 0.00 0.00 43.02 1.90
2820 2902 2.592194 CAACTCTAAGCGCGTAAGACA 58.408 47.619 8.43 0.00 43.02 3.41
2830 2912 6.528072 GGTCACAAAATTATGCAACTCTAAGC 59.472 38.462 0.00 0.00 0.00 3.09
2831 2913 7.592938 TGGTCACAAAATTATGCAACTCTAAG 58.407 34.615 0.00 0.00 0.00 2.18
2893 2989 8.092687 CCAATGAAGAAATCAAAAGGAAGACAT 58.907 33.333 0.00 0.00 42.54 3.06
2901 2997 8.319143 AGAAATGCCAATGAAGAAATCAAAAG 57.681 30.769 0.00 0.00 42.54 2.27
2907 3003 7.899973 ACAACTAGAAATGCCAATGAAGAAAT 58.100 30.769 0.00 0.00 0.00 2.17
2914 3010 9.507280 CTACAATTACAACTAGAAATGCCAATG 57.493 33.333 0.00 0.00 0.00 2.82
3041 3165 9.944376 ACATTCTCACTATAAGAACTTGCTTAA 57.056 29.630 0.00 0.00 35.68 1.85
3042 3166 9.944376 AACATTCTCACTATAAGAACTTGCTTA 57.056 29.630 0.00 0.00 35.68 3.09
3043 3167 8.725148 CAACATTCTCACTATAAGAACTTGCTT 58.275 33.333 0.00 0.00 35.68 3.91
3044 3168 7.880195 ACAACATTCTCACTATAAGAACTTGCT 59.120 33.333 0.00 0.00 35.68 3.91
3045 3169 8.034058 ACAACATTCTCACTATAAGAACTTGC 57.966 34.615 0.00 0.00 35.68 4.01
3134 3260 5.125900 CACACCATCTTATTCAATCCAAGCA 59.874 40.000 0.00 0.00 0.00 3.91
3140 3266 5.449588 CCACAGCACACCATCTTATTCAATC 60.450 44.000 0.00 0.00 0.00 2.67
3149 3275 0.183492 ACAACCACAGCACACCATCT 59.817 50.000 0.00 0.00 0.00 2.90
3191 3321 4.941263 AGCGAATCATGTTAAAGCTAACCA 59.059 37.500 0.00 0.00 37.24 3.67
3230 3361 8.893563 ATATCCCCTTTTCAAAGAATGTGTTA 57.106 30.769 0.56 0.00 38.28 2.41
3349 3486 1.746615 AGCCGCACAACAGCATAGG 60.747 57.895 0.00 0.00 0.00 2.57
3408 3549 2.725641 GGGGACACCAAAACGCAC 59.274 61.111 0.00 0.00 39.85 5.34
3428 3569 4.774726 ACACCAGTGACATGAGAGAACTAT 59.225 41.667 4.48 0.00 0.00 2.12
3441 3587 2.073816 CCCGTATCAAACACCAGTGAC 58.926 52.381 4.48 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.