Multiple sequence alignment - TraesCS5A01G233400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G233400 chr5A 100.000 3977 0 0 1 3977 448627473 448631449 0.000000e+00 7345.0
1 TraesCS5A01G233400 chr5A 94.872 78 4 0 3688 3765 299272977 299272900 5.400000e-24 122.0
2 TraesCS5A01G233400 chr5A 96.610 59 1 1 3611 3668 68561650 68561708 3.270000e-16 97.1
3 TraesCS5A01G233400 chr5A 95.000 60 3 0 3608 3667 371028575 371028634 1.180000e-15 95.3
4 TraesCS5A01G233400 chr5A 92.647 68 2 2 1 68 632903629 632903565 1.180000e-15 95.3
5 TraesCS5A01G233400 chr5A 95.556 45 1 1 3761 3804 510559739 510559783 1.980000e-08 71.3
6 TraesCS5A01G233400 chr5D 89.465 3626 155 94 70 3617 348491827 348495303 0.000000e+00 4370.0
7 TraesCS5A01G233400 chr5D 93.750 80 4 1 3799 3877 348495297 348495376 6.980000e-23 119.0
8 TraesCS5A01G233400 chr5D 94.595 74 3 1 1 73 449895425 449895352 3.250000e-21 113.0
9 TraesCS5A01G233400 chr5D 95.714 70 2 1 1 70 299935991 299936059 1.170000e-20 111.0
10 TraesCS5A01G233400 chr5B 87.730 3635 183 95 70 3615 408971883 408975343 0.000000e+00 3999.0
11 TraesCS5A01G233400 chr5B 91.111 90 6 2 3688 3775 622393521 622393432 1.940000e-23 121.0
12 TraesCS5A01G233400 chr5B 90.541 74 7 0 3799 3872 408975339 408975412 9.100000e-17 99.0
13 TraesCS5A01G233400 chr5B 87.097 62 7 1 3740 3800 631466702 631466641 7.130000e-08 69.4
14 TraesCS5A01G233400 chr7B 100.000 71 0 0 1 71 501763384 501763454 8.970000e-27 132.0
15 TraesCS5A01G233400 chr7B 93.878 49 3 0 3752 3800 205355915 205355963 1.530000e-09 75.0
16 TraesCS5A01G233400 chr7D 95.000 80 3 1 3694 3772 30960251 30960172 1.500000e-24 124.0
17 TraesCS5A01G233400 chr7D 94.805 77 4 0 3688 3764 474604789 474604713 1.940000e-23 121.0
18 TraesCS5A01G233400 chr1B 98.571 70 1 0 1 70 573047600 573047531 1.500000e-24 124.0
19 TraesCS5A01G233400 chr1B 86.076 79 10 1 3590 3668 416165052 416165129 2.550000e-12 84.2
20 TraesCS5A01G233400 chr1B 95.349 43 2 0 3761 3803 509013139 509013097 7.130000e-08 69.4
21 TraesCS5A01G233400 chr1A 94.872 78 4 0 3688 3765 550341632 550341709 5.400000e-24 122.0
22 TraesCS5A01G233400 chr1A 91.765 85 6 1 3688 3771 148610408 148610324 2.510000e-22 117.0
23 TraesCS5A01G233400 chr6D 97.143 70 2 0 1 70 59341444 59341375 6.980000e-23 119.0
24 TraesCS5A01G233400 chr6D 91.667 84 7 0 3688 3771 356738437 356738354 2.510000e-22 117.0
25 TraesCS5A01G233400 chr6D 88.732 71 6 2 3597 3667 349035401 349035469 7.080000e-13 86.1
26 TraesCS5A01G233400 chr3A 92.683 82 6 0 3688 3769 697789728 697789809 6.980000e-23 119.0
27 TraesCS5A01G233400 chr7A 98.485 66 1 0 1 66 602095089 602095154 2.510000e-22 117.0
28 TraesCS5A01G233400 chr2A 91.765 85 6 1 3688 3771 102329342 102329258 2.510000e-22 117.0
29 TraesCS5A01G233400 chr2A 96.552 58 2 0 3611 3668 589690514 589690457 3.270000e-16 97.1
30 TraesCS5A01G233400 chr2A 87.302 63 5 3 3738 3800 765106440 765106499 7.130000e-08 69.4
31 TraesCS5A01G233400 chr2A 91.837 49 4 0 3752 3800 765106577 765106625 7.130000e-08 69.4
32 TraesCS5A01G233400 chr2A 91.837 49 4 0 3752 3800 765106703 765106751 7.130000e-08 69.4
33 TraesCS5A01G233400 chr2B 95.714 70 3 0 1 70 26579300 26579231 3.250000e-21 113.0
34 TraesCS5A01G233400 chr2B 96.610 59 1 1 3611 3668 199403102 199403160 3.270000e-16 97.1
35 TraesCS5A01G233400 chr2B 91.045 67 6 0 3601 3667 364949141 364949075 1.520000e-14 91.6
36 TraesCS5A01G233400 chr2B 92.063 63 3 2 3606 3667 455242634 455242573 1.970000e-13 87.9
37 TraesCS5A01G233400 chr4B 95.714 70 1 1 1 68 500347788 500347857 1.170000e-20 111.0
38 TraesCS5A01G233400 chr3D 94.286 70 4 0 1 70 478649382 478649451 1.510000e-19 108.0
39 TraesCS5A01G233400 chr3B 93.651 63 4 0 3605 3667 581135889 581135827 1.180000e-15 95.3
40 TraesCS5A01G233400 chr4A 93.478 46 3 0 3753 3798 658949220 658949265 7.130000e-08 69.4
41 TraesCS5A01G233400 chr4D 91.667 48 3 1 3761 3807 71532975 71532928 9.230000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G233400 chr5A 448627473 448631449 3976 False 7345.0 7345 100.0000 1 3977 1 chr5A.!!$F3 3976
1 TraesCS5A01G233400 chr5D 348491827 348495376 3549 False 2244.5 4370 91.6075 70 3877 2 chr5D.!!$F2 3807
2 TraesCS5A01G233400 chr5B 408971883 408975412 3529 False 2049.0 3999 89.1355 70 3872 2 chr5B.!!$F1 3802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.036388 ACCGTTCATTCCTGCATCGT 60.036 50.0 0.00 0.00 0.00 3.73 F
1032 1087 0.036199 AGGAAAGAGAGCTGCTGCAG 60.036 55.0 24.80 24.80 42.74 4.41 F
2229 2354 0.033228 TTTTCAAGGCGCATTGGGTG 59.967 50.0 31.66 10.13 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1811 0.030705 TGGAATCTGAGGGAGGGAGG 60.031 60.0 0.0 0.0 0.00 4.30 R
2975 3100 0.317603 GCTGCAATGATGGACGCATC 60.318 55.0 0.0 0.0 33.15 3.91 R
3283 3419 0.179108 GGACGGACGATCCAAGGAAG 60.179 60.0 0.0 0.0 35.91 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.316119 GCAGACAACACCGTTCATTC 57.684 50.000 0.00 0.00 0.00 2.67
20 21 1.069227 GCAGACAACACCGTTCATTCC 60.069 52.381 0.00 0.00 0.00 3.01
21 22 2.494059 CAGACAACACCGTTCATTCCT 58.506 47.619 0.00 0.00 0.00 3.36
22 23 2.224079 CAGACAACACCGTTCATTCCTG 59.776 50.000 0.00 0.00 0.00 3.86
23 24 0.951558 ACAACACCGTTCATTCCTGC 59.048 50.000 0.00 0.00 0.00 4.85
24 25 0.950836 CAACACCGTTCATTCCTGCA 59.049 50.000 0.00 0.00 0.00 4.41
25 26 1.541147 CAACACCGTTCATTCCTGCAT 59.459 47.619 0.00 0.00 0.00 3.96
26 27 1.453155 ACACCGTTCATTCCTGCATC 58.547 50.000 0.00 0.00 0.00 3.91
27 28 0.374758 CACCGTTCATTCCTGCATCG 59.625 55.000 0.00 0.00 0.00 3.84
28 29 0.036388 ACCGTTCATTCCTGCATCGT 60.036 50.000 0.00 0.00 0.00 3.73
29 30 0.374758 CCGTTCATTCCTGCATCGTG 59.625 55.000 0.00 0.00 0.00 4.35
30 31 1.078709 CGTTCATTCCTGCATCGTGT 58.921 50.000 0.00 0.00 0.00 4.49
31 32 1.201954 CGTTCATTCCTGCATCGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
32 33 1.131126 GTTCATTCCTGCATCGTGTGG 59.869 52.381 0.00 0.00 0.00 4.17
33 34 0.392863 TCATTCCTGCATCGTGTGGG 60.393 55.000 0.00 0.00 0.00 4.61
34 35 1.077501 ATTCCTGCATCGTGTGGGG 60.078 57.895 0.00 0.00 0.00 4.96
35 36 1.852157 ATTCCTGCATCGTGTGGGGT 61.852 55.000 0.00 0.00 0.00 4.95
36 37 2.034066 CCTGCATCGTGTGGGGTT 59.966 61.111 0.00 0.00 0.00 4.11
37 38 2.040544 CCTGCATCGTGTGGGGTTC 61.041 63.158 0.00 0.00 0.00 3.62
38 39 2.358125 TGCATCGTGTGGGGTTCG 60.358 61.111 0.00 0.00 0.00 3.95
39 40 3.124921 GCATCGTGTGGGGTTCGG 61.125 66.667 0.00 0.00 0.00 4.30
40 41 3.124921 CATCGTGTGGGGTTCGGC 61.125 66.667 0.00 0.00 0.00 5.54
41 42 4.404098 ATCGTGTGGGGTTCGGCC 62.404 66.667 0.00 0.00 0.00 6.13
46 47 3.712907 GTGGGGTTCGGCCAGCTA 61.713 66.667 2.24 0.00 39.65 3.32
47 48 3.399181 TGGGGTTCGGCCAGCTAG 61.399 66.667 2.24 0.00 39.65 3.42
48 49 3.400054 GGGGTTCGGCCAGCTAGT 61.400 66.667 2.24 0.00 39.65 2.57
49 50 2.125106 GGGTTCGGCCAGCTAGTG 60.125 66.667 2.24 0.00 39.65 2.74
50 51 2.663196 GGTTCGGCCAGCTAGTGT 59.337 61.111 2.24 0.00 37.17 3.55
51 52 1.448013 GGTTCGGCCAGCTAGTGTC 60.448 63.158 2.24 0.00 37.17 3.67
52 53 1.805945 GTTCGGCCAGCTAGTGTCG 60.806 63.158 2.24 0.00 0.00 4.35
53 54 2.273179 TTCGGCCAGCTAGTGTCGT 61.273 57.895 2.24 0.00 0.00 4.34
54 55 2.202623 CGGCCAGCTAGTGTCGTC 60.203 66.667 2.24 0.00 0.00 4.20
55 56 2.184579 GGCCAGCTAGTGTCGTCC 59.815 66.667 0.00 0.00 0.00 4.79
56 57 2.202623 GCCAGCTAGTGTCGTCCG 60.203 66.667 0.00 0.00 0.00 4.79
57 58 2.991076 GCCAGCTAGTGTCGTCCGT 61.991 63.158 0.00 0.00 0.00 4.69
58 59 1.136984 CCAGCTAGTGTCGTCCGTC 59.863 63.158 0.00 0.00 0.00 4.79
59 60 1.136984 CAGCTAGTGTCGTCCGTCC 59.863 63.158 0.00 0.00 0.00 4.79
60 61 1.303074 AGCTAGTGTCGTCCGTCCA 60.303 57.895 0.00 0.00 0.00 4.02
61 62 1.136984 GCTAGTGTCGTCCGTCCAG 59.863 63.158 0.00 0.00 0.00 3.86
62 63 1.136984 CTAGTGTCGTCCGTCCAGC 59.863 63.158 0.00 0.00 0.00 4.85
63 64 1.583495 CTAGTGTCGTCCGTCCAGCA 61.583 60.000 0.00 0.00 0.00 4.41
64 65 1.583495 TAGTGTCGTCCGTCCAGCAG 61.583 60.000 0.00 0.00 0.00 4.24
65 66 2.910479 TGTCGTCCGTCCAGCAGT 60.910 61.111 0.00 0.00 0.00 4.40
66 67 2.338984 GTCGTCCGTCCAGCAGTT 59.661 61.111 0.00 0.00 0.00 3.16
67 68 1.300697 GTCGTCCGTCCAGCAGTTT 60.301 57.895 0.00 0.00 0.00 2.66
68 69 1.006571 TCGTCCGTCCAGCAGTTTC 60.007 57.895 0.00 0.00 0.00 2.78
147 151 2.882324 GACCTGCAGTCTGCTTACTAC 58.118 52.381 24.76 8.56 45.31 2.73
148 152 2.494073 GACCTGCAGTCTGCTTACTACT 59.506 50.000 24.76 1.45 45.31 2.57
149 153 2.494073 ACCTGCAGTCTGCTTACTACTC 59.506 50.000 24.76 0.00 45.31 2.59
150 154 2.493675 CCTGCAGTCTGCTTACTACTCA 59.506 50.000 24.76 1.09 45.31 3.41
172 178 7.915397 ACTCATCACAATAACAAACTCAAACAC 59.085 33.333 0.00 0.00 0.00 3.32
173 179 7.766283 TCATCACAATAACAAACTCAAACACA 58.234 30.769 0.00 0.00 0.00 3.72
195 201 1.135141 TGCACACTTTGAGGCAACAAC 60.135 47.619 0.00 0.00 41.41 3.32
197 203 2.673610 GCACACTTTGAGGCAACAACAA 60.674 45.455 0.00 0.00 41.41 2.83
198 204 2.923020 CACACTTTGAGGCAACAACAAC 59.077 45.455 0.00 0.00 41.41 3.32
199 205 2.560542 ACACTTTGAGGCAACAACAACA 59.439 40.909 0.00 0.00 41.41 3.33
235 241 1.145759 AATAGCGGCGACACGTGATG 61.146 55.000 25.01 14.81 35.98 3.07
249 255 0.460987 GTGATGAGGGAAGGCGTCAG 60.461 60.000 2.23 0.00 31.25 3.51
295 312 1.372004 CACAAAGCCGTCCGTCGTA 60.372 57.895 0.00 0.00 37.94 3.43
296 313 1.080974 ACAAAGCCGTCCGTCGTAG 60.081 57.895 0.00 0.00 37.94 3.51
297 314 1.080974 CAAAGCCGTCCGTCGTAGT 60.081 57.895 0.00 0.00 37.94 2.73
298 315 0.168788 CAAAGCCGTCCGTCGTAGTA 59.831 55.000 0.00 0.00 37.94 1.82
327 354 2.279517 CCCTCGCCGACATACTGC 60.280 66.667 0.00 0.00 0.00 4.40
409 436 2.159114 GCAAAACAAAAGCAGGTGAGGA 60.159 45.455 0.00 0.00 0.00 3.71
410 437 3.493176 GCAAAACAAAAGCAGGTGAGGAT 60.493 43.478 0.00 0.00 0.00 3.24
411 438 4.301628 CAAAACAAAAGCAGGTGAGGATC 58.698 43.478 0.00 0.00 0.00 3.36
412 439 1.813513 ACAAAAGCAGGTGAGGATCG 58.186 50.000 0.00 0.00 38.61 3.69
413 440 1.347707 ACAAAAGCAGGTGAGGATCGA 59.652 47.619 0.00 0.00 38.61 3.59
416 443 2.393271 AAGCAGGTGAGGATCGAAAG 57.607 50.000 0.00 0.00 38.61 2.62
459 486 1.348036 ACGGGAGCAGTAAAGAAAGCT 59.652 47.619 0.00 0.00 40.60 3.74
469 496 4.803088 CAGTAAAGAAAGCTGATCGAGGAG 59.197 45.833 0.00 0.00 32.39 3.69
477 504 1.327303 CTGATCGAGGAGGAAGGGAG 58.673 60.000 0.00 0.00 0.00 4.30
479 506 1.458588 ATCGAGGAGGAAGGGAGGC 60.459 63.158 0.00 0.00 0.00 4.70
536 564 2.187163 GGCACGTAGAGGAAGGCC 59.813 66.667 0.00 0.00 0.00 5.19
537 565 2.656069 GGCACGTAGAGGAAGGCCA 61.656 63.158 5.01 0.00 41.02 5.36
538 566 1.153549 GCACGTAGAGGAAGGCCAG 60.154 63.158 5.01 0.00 36.29 4.85
539 567 1.153549 CACGTAGAGGAAGGCCAGC 60.154 63.158 5.01 0.00 36.29 4.85
540 568 2.105128 CGTAGAGGAAGGCCAGCG 59.895 66.667 5.01 0.00 36.29 5.18
564 592 0.095417 GCGAATCACGAGGAAAGCAC 59.905 55.000 0.00 0.00 45.77 4.40
575 603 2.436646 AAAGCACGCCGGGAGATG 60.437 61.111 2.18 0.44 0.00 2.90
579 607 4.227134 CACGCCGGGAGATGGAGG 62.227 72.222 2.18 0.00 0.00 4.30
581 609 4.227134 CGCCGGGAGATGGAGGTG 62.227 72.222 2.18 0.00 0.00 4.00
589 617 1.743321 GAGATGGAGGTGGAGCGAGG 61.743 65.000 0.00 0.00 0.00 4.63
631 659 1.187921 CTTTTGCTTTCGTTGCTTCGC 59.812 47.619 0.00 0.00 0.00 4.70
645 673 1.464997 GCTTCGCTTGGACTTTGGTAG 59.535 52.381 0.00 0.00 0.00 3.18
649 677 2.895404 TCGCTTGGACTTTGGTAGTACT 59.105 45.455 0.00 0.00 38.64 2.73
650 678 4.081406 TCGCTTGGACTTTGGTAGTACTA 58.919 43.478 0.00 0.00 38.64 1.82
651 679 4.082571 TCGCTTGGACTTTGGTAGTACTAC 60.083 45.833 22.53 22.53 38.64 2.73
652 680 4.171754 GCTTGGACTTTGGTAGTACTACG 58.828 47.826 23.40 13.81 38.64 3.51
653 681 4.321527 GCTTGGACTTTGGTAGTACTACGT 60.322 45.833 23.40 16.56 38.64 3.57
654 682 5.106157 GCTTGGACTTTGGTAGTACTACGTA 60.106 44.000 23.40 14.05 38.64 3.57
655 683 6.500684 TTGGACTTTGGTAGTACTACGTAG 57.499 41.667 23.40 20.97 38.64 3.51
656 684 4.943705 TGGACTTTGGTAGTACTACGTAGG 59.056 45.833 25.63 16.68 38.64 3.18
657 685 4.944317 GGACTTTGGTAGTACTACGTAGGT 59.056 45.833 25.63 19.20 37.17 3.08
658 686 6.113411 GGACTTTGGTAGTACTACGTAGGTA 58.887 44.000 25.63 12.93 37.17 3.08
659 687 6.037281 GGACTTTGGTAGTACTACGTAGGTAC 59.963 46.154 25.63 21.82 37.17 3.34
660 688 5.581085 ACTTTGGTAGTACTACGTAGGTACG 59.419 44.000 25.63 7.98 44.62 3.67
661 689 7.831078 ACTTTGGTAGTACTACGTAGGTACGC 61.831 46.154 25.63 19.07 43.68 4.42
706 734 0.955178 CGACTGTCACTGGACTGACT 59.045 55.000 8.73 0.00 44.61 3.41
707 735 1.335415 CGACTGTCACTGGACTGACTG 60.335 57.143 8.73 5.06 44.61 3.51
708 736 1.957177 GACTGTCACTGGACTGACTGA 59.043 52.381 11.71 0.00 44.61 3.41
709 737 1.683917 ACTGTCACTGGACTGACTGAC 59.316 52.381 11.71 0.00 44.61 3.51
710 738 1.000283 CTGTCACTGGACTGACTGACC 60.000 57.143 1.33 0.00 44.61 4.02
712 740 0.105709 TCACTGGACTGACTGACCCA 60.106 55.000 0.00 0.00 0.00 4.51
714 742 1.294780 CTGGACTGACTGACCCAGC 59.705 63.158 0.00 0.00 39.59 4.85
724 767 1.133915 ACTGACCCAGCGGAAAGAAAA 60.134 47.619 0.00 0.00 34.37 2.29
725 768 2.162681 CTGACCCAGCGGAAAGAAAAT 58.837 47.619 0.00 0.00 0.00 1.82
728 771 3.504520 TGACCCAGCGGAAAGAAAATAAC 59.495 43.478 0.00 0.00 0.00 1.89
755 798 3.663176 CAGCGGCCAACTGGTGTG 61.663 66.667 13.82 0.00 44.12 3.82
844 888 0.825840 TCTGGCGTTGGGGGAAAAAG 60.826 55.000 0.00 0.00 0.00 2.27
845 889 0.825840 CTGGCGTTGGGGGAAAAAGA 60.826 55.000 0.00 0.00 0.00 2.52
846 890 0.397254 TGGCGTTGGGGGAAAAAGAA 60.397 50.000 0.00 0.00 0.00 2.52
847 891 0.753867 GGCGTTGGGGGAAAAAGAAA 59.246 50.000 0.00 0.00 0.00 2.52
905 951 4.927782 GGCCCGCTCACACACACA 62.928 66.667 0.00 0.00 0.00 3.72
907 953 2.203001 CCCGCTCACACACACACA 60.203 61.111 0.00 0.00 0.00 3.72
909 955 1.813337 CCGCTCACACACACACACA 60.813 57.895 0.00 0.00 0.00 3.72
911 957 1.357991 CGCTCACACACACACACACA 61.358 55.000 0.00 0.00 0.00 3.72
913 959 1.437625 CTCACACACACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
915 961 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
917 963 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
919 965 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
929 975 0.941463 CACACACACACTCTCGCTCC 60.941 60.000 0.00 0.00 0.00 4.70
930 976 1.109920 ACACACACACTCTCGCTCCT 61.110 55.000 0.00 0.00 0.00 3.69
931 977 0.387878 CACACACACTCTCGCTCCTC 60.388 60.000 0.00 0.00 0.00 3.71
932 978 0.538516 ACACACACTCTCGCTCCTCT 60.539 55.000 0.00 0.00 0.00 3.69
933 979 0.170116 CACACACTCTCGCTCCTCTC 59.830 60.000 0.00 0.00 0.00 3.20
934 980 1.302383 ACACACTCTCGCTCCTCTCG 61.302 60.000 0.00 0.00 0.00 4.04
935 981 2.403378 ACACTCTCGCTCCTCTCGC 61.403 63.158 0.00 0.00 0.00 5.03
936 982 2.112198 CACTCTCGCTCCTCTCGCT 61.112 63.158 0.00 0.00 0.00 4.93
937 983 1.817941 ACTCTCGCTCCTCTCGCTC 60.818 63.158 0.00 0.00 0.00 5.03
938 984 1.523711 CTCTCGCTCCTCTCGCTCT 60.524 63.158 0.00 0.00 0.00 4.09
939 985 1.078072 TCTCGCTCCTCTCGCTCTT 60.078 57.895 0.00 0.00 0.00 2.85
942 988 1.226547 CGCTCCTCTCGCTCTTGTC 60.227 63.158 0.00 0.00 0.00 3.18
943 989 1.653094 CGCTCCTCTCGCTCTTGTCT 61.653 60.000 0.00 0.00 0.00 3.41
944 990 0.530288 GCTCCTCTCGCTCTTGTCTT 59.470 55.000 0.00 0.00 0.00 3.01
945 991 1.735369 GCTCCTCTCGCTCTTGTCTTG 60.735 57.143 0.00 0.00 0.00 3.02
947 993 0.739112 CCTCTCGCTCTTGTCTTGCC 60.739 60.000 0.00 0.00 0.00 4.52
948 994 0.037882 CTCTCGCTCTTGTCTTGCCA 60.038 55.000 0.00 0.00 0.00 4.92
949 995 0.319900 TCTCGCTCTTGTCTTGCCAC 60.320 55.000 0.00 0.00 0.00 5.01
951 997 0.880278 TCGCTCTTGTCTTGCCACAC 60.880 55.000 0.00 0.00 0.00 3.82
952 998 1.159713 CGCTCTTGTCTTGCCACACA 61.160 55.000 0.00 0.00 0.00 3.72
953 999 0.590195 GCTCTTGTCTTGCCACACAG 59.410 55.000 0.00 0.00 0.00 3.66
954 1000 1.233019 CTCTTGTCTTGCCACACAGG 58.767 55.000 0.00 0.00 41.84 4.00
1032 1087 0.036199 AGGAAAGAGAGCTGCTGCAG 60.036 55.000 24.80 24.80 42.74 4.41
1146 1234 2.185608 GACTCCTTCCTGCTCGGC 59.814 66.667 0.00 0.00 0.00 5.54
1209 1297 2.885861 CTCCACGACCTCTTCCCG 59.114 66.667 0.00 0.00 0.00 5.14
1260 1348 3.127533 ATGCCCGCGCTCTGTTTC 61.128 61.111 5.56 0.00 35.36 2.78
1266 1354 1.807573 CGCGCTCTGTTTCCCTCTC 60.808 63.158 5.56 0.00 0.00 3.20
1268 1356 1.219393 CGCTCTGTTTCCCTCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
1462 1566 3.825328 ACACAATGCCCATCCTTATCTC 58.175 45.455 0.00 0.00 0.00 2.75
1481 1585 3.034562 CTCTCGCGTCCGAATTAACTAC 58.965 50.000 5.77 0.00 43.87 2.73
1482 1586 2.114825 CTCGCGTCCGAATTAACTACC 58.885 52.381 5.77 0.00 43.87 3.18
1483 1587 0.841984 CGCGTCCGAATTAACTACCG 59.158 55.000 0.00 0.00 36.29 4.02
1517 1621 1.079127 AGATTTCCTCGGCCGTGTG 60.079 57.895 27.15 16.33 0.00 3.82
1577 1681 4.082523 CTGGGACGCCGGTGATGT 62.083 66.667 24.59 6.21 0.00 3.06
1690 1794 4.067896 CTCTTTCCTCTGTAAGCAAAGCA 58.932 43.478 0.00 0.00 29.92 3.91
1703 1807 1.925972 AAAGCACCTCCCTCCCTCC 60.926 63.158 0.00 0.00 0.00 4.30
1704 1808 2.713111 AAAGCACCTCCCTCCCTCCA 62.713 60.000 0.00 0.00 0.00 3.86
1705 1809 2.367512 GCACCTCCCTCCCTCCAT 60.368 66.667 0.00 0.00 0.00 3.41
1706 1810 2.447714 GCACCTCCCTCCCTCCATC 61.448 68.421 0.00 0.00 0.00 3.51
1707 1811 1.768077 CACCTCCCTCCCTCCATCC 60.768 68.421 0.00 0.00 0.00 3.51
1708 1812 2.122189 CCTCCCTCCCTCCATCCC 60.122 72.222 0.00 0.00 0.00 3.85
1722 1826 0.193069 CATCCCTCCCTCCCTCAGAT 59.807 60.000 0.00 0.00 0.00 2.90
1821 1925 1.063266 ACCAAGGAGGCAAGGACAAAA 60.063 47.619 0.00 0.00 43.14 2.44
1837 1941 4.515432 GACAAAACACAAAGTCGTAGAGC 58.485 43.478 0.00 0.00 36.95 4.09
1976 2082 2.158682 ACCCTATGATTTGCGCATGGTA 60.159 45.455 12.75 0.00 0.00 3.25
1977 2083 2.884012 CCCTATGATTTGCGCATGGTAA 59.116 45.455 12.75 1.82 0.00 2.85
1978 2084 3.507233 CCCTATGATTTGCGCATGGTAAT 59.493 43.478 12.75 8.04 0.00 1.89
1979 2085 4.699735 CCCTATGATTTGCGCATGGTAATA 59.300 41.667 12.75 5.57 0.00 0.98
1980 2086 5.357878 CCCTATGATTTGCGCATGGTAATAT 59.642 40.000 12.75 5.51 0.00 1.28
1982 2088 7.229306 CCCTATGATTTGCGCATGGTAATATAT 59.771 37.037 12.75 8.68 0.00 0.86
1983 2089 9.271828 CCTATGATTTGCGCATGGTAATATATA 57.728 33.333 12.75 9.32 0.00 0.86
1986 2092 8.785329 TGATTTGCGCATGGTAATATATAGAA 57.215 30.769 12.75 0.00 0.00 2.10
1987 2093 8.882736 TGATTTGCGCATGGTAATATATAGAAG 58.117 33.333 12.75 0.00 0.00 2.85
2029 2154 5.620206 TGGTAGGATTGCACCATAATAGTG 58.380 41.667 0.00 0.00 39.91 2.74
2075 2200 9.817809 ATATAATAGTGTGGACTTGTTAGTGTG 57.182 33.333 0.00 0.00 33.84 3.82
2117 2242 6.794158 CGCTTCTTTTCAAGTAAAGACAGATG 59.206 38.462 1.98 0.00 42.24 2.90
2137 2262 3.670625 TGTGGGTGTTACATGCTTAGAC 58.329 45.455 0.00 0.00 0.00 2.59
2229 2354 0.033228 TTTTCAAGGCGCATTGGGTG 59.967 50.000 31.66 10.13 0.00 4.61
2266 2391 1.658994 TTAACCGGTTGATGATCGCC 58.341 50.000 30.08 0.00 0.00 5.54
2321 2446 1.065410 TTTCTCCAAGAGGCCCACCA 61.065 55.000 0.00 0.00 39.06 4.17
2335 2460 1.308069 CCACCATGGCAGAAGAACCG 61.308 60.000 13.04 0.00 0.00 4.44
2516 2641 4.863925 GCTGCTCCTCCTCGTCGC 62.864 72.222 0.00 0.00 0.00 5.19
2518 2643 3.119709 CTGCTCCTCCTCGTCGCTC 62.120 68.421 0.00 0.00 0.00 5.03
2597 2722 1.074951 CCACCCACTCCCAAGAACC 59.925 63.158 0.00 0.00 0.00 3.62
2619 2744 6.456501 ACCGTCTAATCACATAATCTAAGGC 58.543 40.000 0.00 0.00 0.00 4.35
2642 2767 3.806316 AATTAACTTTGACTGGCGTCG 57.194 42.857 5.32 0.00 43.21 5.12
2975 3100 2.360949 ATCATGAGGACGCGAGGCTG 62.361 60.000 15.93 2.26 40.87 4.85
2994 3119 0.317603 GATGCGTCCATCATTGCAGC 60.318 55.000 0.00 0.00 45.75 5.25
2995 3120 1.033202 ATGCGTCCATCATTGCAGCA 61.033 50.000 0.00 0.00 41.19 4.41
3032 3157 4.124351 GCCCATGGACGACGACGA 62.124 66.667 15.22 0.00 42.66 4.20
3046 3171 1.202568 ACGACGATGCATGATGATGGT 60.203 47.619 2.46 0.00 0.00 3.55
3049 3174 1.944709 ACGATGCATGATGATGGTGTG 59.055 47.619 2.46 0.00 0.00 3.82
3078 3203 1.071385 AGATTAGCCCGGCTCAATCAG 59.929 52.381 26.52 0.00 40.44 2.90
3079 3204 0.839946 ATTAGCCCGGCTCAATCAGT 59.160 50.000 17.40 0.00 40.44 3.41
3080 3205 0.107703 TTAGCCCGGCTCAATCAGTG 60.108 55.000 17.40 0.00 40.44 3.66
3081 3206 2.593468 TAGCCCGGCTCAATCAGTGC 62.593 60.000 17.40 0.00 40.44 4.40
3152 3284 0.387929 GTATCCCGAGTTCCGATGCA 59.612 55.000 0.00 0.00 41.76 3.96
3172 3304 6.951256 TGCAGTGTAATTATATGCTCGATC 57.049 37.500 15.92 0.00 37.76 3.69
3177 3312 8.590470 CAGTGTAATTATATGCTCGATCACATC 58.410 37.037 0.00 0.00 0.00 3.06
3180 3315 7.761249 TGTAATTATATGCTCGATCACATCAGG 59.239 37.037 0.00 0.00 0.00 3.86
3181 3316 5.982890 TTATATGCTCGATCACATCAGGA 57.017 39.130 0.00 0.00 0.00 3.86
3182 3317 2.816204 ATGCTCGATCACATCAGGAG 57.184 50.000 0.00 0.00 0.00 3.69
3183 3318 1.478631 TGCTCGATCACATCAGGAGT 58.521 50.000 0.00 0.00 0.00 3.85
3192 3327 1.066573 CACATCAGGAGTGAGTGGGTC 60.067 57.143 0.00 0.00 39.30 4.46
3237 3373 1.669604 TCTCTTCTCCGGATCTCGTG 58.330 55.000 3.57 0.00 37.11 4.35
3247 3383 3.056107 TCCGGATCTCGTGTTTGATCTTT 60.056 43.478 0.00 0.00 39.09 2.52
3248 3384 3.307242 CCGGATCTCGTGTTTGATCTTTC 59.693 47.826 0.00 0.00 39.09 2.62
3249 3385 4.177026 CGGATCTCGTGTTTGATCTTTCT 58.823 43.478 0.00 0.00 39.09 2.52
3250 3386 4.627467 CGGATCTCGTGTTTGATCTTTCTT 59.373 41.667 0.00 0.00 39.09 2.52
3294 3430 2.398803 GCGAAGGCTTCCTTGGATC 58.601 57.895 20.97 0.00 44.82 3.36
3295 3431 1.432270 GCGAAGGCTTCCTTGGATCG 61.432 60.000 20.97 9.02 44.82 3.69
3296 3432 0.108138 CGAAGGCTTCCTTGGATCGT 60.108 55.000 20.97 0.00 44.82 3.73
3297 3433 1.657822 GAAGGCTTCCTTGGATCGTC 58.342 55.000 16.50 0.00 44.82 4.20
3298 3434 0.253327 AAGGCTTCCTTGGATCGTCC 59.747 55.000 0.00 0.00 42.96 4.79
3299 3435 1.521681 GGCTTCCTTGGATCGTCCG 60.522 63.158 0.00 0.00 40.17 4.79
3300 3436 1.218316 GCTTCCTTGGATCGTCCGT 59.782 57.895 0.00 0.00 40.17 4.69
3301 3437 0.806492 GCTTCCTTGGATCGTCCGTC 60.806 60.000 0.00 0.00 40.17 4.79
3327 3463 0.669318 TCGCCGTAGCAAGGAACAAG 60.669 55.000 0.00 0.00 39.83 3.16
3328 3464 0.669318 CGCCGTAGCAAGGAACAAGA 60.669 55.000 0.00 0.00 39.83 3.02
3329 3465 1.079503 GCCGTAGCAAGGAACAAGAG 58.920 55.000 0.00 0.00 39.53 2.85
3330 3466 1.337823 GCCGTAGCAAGGAACAAGAGA 60.338 52.381 0.00 0.00 39.53 3.10
3331 3467 2.611518 CCGTAGCAAGGAACAAGAGAG 58.388 52.381 0.00 0.00 0.00 3.20
3332 3468 1.996191 CGTAGCAAGGAACAAGAGAGC 59.004 52.381 0.00 0.00 0.00 4.09
3333 3469 2.351455 GTAGCAAGGAACAAGAGAGCC 58.649 52.381 0.00 0.00 0.00 4.70
3334 3470 0.321122 AGCAAGGAACAAGAGAGCCG 60.321 55.000 0.00 0.00 0.00 5.52
3335 3471 1.301677 GCAAGGAACAAGAGAGCCGG 61.302 60.000 0.00 0.00 0.00 6.13
3336 3472 1.003233 AAGGAACAAGAGAGCCGGC 60.003 57.895 21.89 21.89 0.00 6.13
3338 3474 2.815647 GAACAAGAGAGCCGGCCG 60.816 66.667 26.15 21.04 0.00 6.13
3401 3537 1.717348 GTGTTTACGGCCGCATACC 59.283 57.895 28.58 10.41 0.00 2.73
3486 3625 0.254178 AATTCGAGCTGCCTCCATGT 59.746 50.000 0.00 0.00 34.49 3.21
3487 3626 0.179062 ATTCGAGCTGCCTCCATGTC 60.179 55.000 0.00 0.00 34.49 3.06
3488 3627 1.543944 TTCGAGCTGCCTCCATGTCA 61.544 55.000 0.00 0.00 34.49 3.58
3489 3628 1.078918 CGAGCTGCCTCCATGTCAA 60.079 57.895 0.00 0.00 34.49 3.18
3581 3723 0.674895 ATCACTCACCGCAAAGCCTC 60.675 55.000 0.00 0.00 0.00 4.70
3602 3744 2.373224 CCTCTGGAATGGCTTCTTTCC 58.627 52.381 0.00 0.00 42.06 3.13
3617 3759 8.145122 TGGCTTCTTTCCGTTTGTTTAAAATAT 58.855 29.630 0.00 0.00 0.00 1.28
3618 3760 9.628746 GGCTTCTTTCCGTTTGTTTAAAATATA 57.371 29.630 0.00 0.00 0.00 0.86
3626 3768 8.949177 TCCGTTTGTTTAAAATATACTTCCTCC 58.051 33.333 0.00 0.00 0.00 4.30
3627 3769 7.906527 CCGTTTGTTTAAAATATACTTCCTCCG 59.093 37.037 0.00 0.00 0.00 4.63
3628 3770 8.445493 CGTTTGTTTAAAATATACTTCCTCCGT 58.555 33.333 0.00 0.00 0.00 4.69
3631 3773 8.496707 TGTTTAAAATATACTTCCTCCGTTCC 57.503 34.615 0.00 0.00 0.00 3.62
3632 3774 8.102047 TGTTTAAAATATACTTCCTCCGTTCCA 58.898 33.333 0.00 0.00 0.00 3.53
3633 3775 8.949177 GTTTAAAATATACTTCCTCCGTTCCAA 58.051 33.333 0.00 0.00 0.00 3.53
3634 3776 9.517868 TTTAAAATATACTTCCTCCGTTCCAAA 57.482 29.630 0.00 0.00 0.00 3.28
3635 3777 9.517868 TTAAAATATACTTCCTCCGTTCCAAAA 57.482 29.630 0.00 0.00 0.00 2.44
3636 3778 8.589701 AAAATATACTTCCTCCGTTCCAAAAT 57.410 30.769 0.00 0.00 0.00 1.82
3637 3779 9.689501 AAAATATACTTCCTCCGTTCCAAAATA 57.310 29.630 0.00 0.00 0.00 1.40
3638 3780 8.904099 AATATACTTCCTCCGTTCCAAAATAG 57.096 34.615 0.00 0.00 0.00 1.73
3639 3781 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
3640 3782 5.437191 ACTTCCTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
3641 3783 5.186198 ACTTCCTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
3642 3784 5.045869 ACTTCCTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
3643 3785 4.766375 TCCTCCGTTCCAAAATAGATGAC 58.234 43.478 0.00 0.00 0.00 3.06
3644 3786 4.469945 TCCTCCGTTCCAAAATAGATGACT 59.530 41.667 0.00 0.00 0.00 3.41
3645 3787 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3646 3788 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3647 3789 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3648 3790 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3649 3791 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3650 3792 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3651 3793 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3652 3794 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
3698 3840 9.658799 TCTGTTCATTTCTATAAGACCTTTCAG 57.341 33.333 0.00 0.00 0.00 3.02
3699 3841 9.658799 CTGTTCATTTCTATAAGACCTTTCAGA 57.341 33.333 0.00 0.00 0.00 3.27
3700 3842 9.436957 TGTTCATTTCTATAAGACCTTTCAGAC 57.563 33.333 0.00 0.00 0.00 3.51
3701 3843 9.436957 GTTCATTTCTATAAGACCTTTCAGACA 57.563 33.333 0.00 0.00 0.00 3.41
3705 3847 9.965902 ATTTCTATAAGACCTTTCAGACAATGT 57.034 29.630 0.00 0.00 0.00 2.71
3706 3848 8.777865 TTCTATAAGACCTTTCAGACAATGTG 57.222 34.615 0.00 0.00 0.00 3.21
3707 3849 5.886960 ATAAGACCTTTCAGACAATGTGC 57.113 39.130 0.00 0.00 0.00 4.57
3708 3850 3.213206 AGACCTTTCAGACAATGTGCA 57.787 42.857 0.00 0.00 0.00 4.57
3709 3851 3.554934 AGACCTTTCAGACAATGTGCAA 58.445 40.909 0.00 0.00 0.00 4.08
3710 3852 3.953612 AGACCTTTCAGACAATGTGCAAA 59.046 39.130 0.00 0.00 0.00 3.68
3711 3853 4.402155 AGACCTTTCAGACAATGTGCAAAA 59.598 37.500 0.00 0.00 0.00 2.44
3712 3854 4.432712 ACCTTTCAGACAATGTGCAAAAC 58.567 39.130 0.00 0.00 0.00 2.43
3713 3855 4.081752 ACCTTTCAGACAATGTGCAAAACA 60.082 37.500 0.00 0.00 44.79 2.83
3714 3856 4.869297 CCTTTCAGACAATGTGCAAAACAA 59.131 37.500 0.00 0.00 43.61 2.83
3715 3857 5.220453 CCTTTCAGACAATGTGCAAAACAAC 60.220 40.000 0.00 0.00 43.61 3.32
3716 3858 3.779759 TCAGACAATGTGCAAAACAACC 58.220 40.909 0.00 0.00 43.61 3.77
3717 3859 3.446873 TCAGACAATGTGCAAAACAACCT 59.553 39.130 0.00 0.00 43.61 3.50
3718 3860 4.642437 TCAGACAATGTGCAAAACAACCTA 59.358 37.500 0.00 0.00 43.61 3.08
3719 3861 5.301551 TCAGACAATGTGCAAAACAACCTAT 59.698 36.000 0.00 0.00 43.61 2.57
3720 3862 5.984926 CAGACAATGTGCAAAACAACCTATT 59.015 36.000 0.00 0.00 43.61 1.73
3721 3863 6.479660 CAGACAATGTGCAAAACAACCTATTT 59.520 34.615 0.00 0.00 43.61 1.40
3722 3864 7.011295 CAGACAATGTGCAAAACAACCTATTTT 59.989 33.333 0.00 0.00 43.61 1.82
3723 3865 7.011295 AGACAATGTGCAAAACAACCTATTTTG 59.989 33.333 0.00 5.96 45.68 2.44
3724 3866 6.820656 ACAATGTGCAAAACAACCTATTTTGA 59.179 30.769 13.00 0.00 45.75 2.69
3725 3867 7.335422 ACAATGTGCAAAACAACCTATTTTGAA 59.665 29.630 13.00 1.07 45.75 2.69
3726 3868 8.344098 CAATGTGCAAAACAACCTATTTTGAAT 58.656 29.630 13.00 2.41 45.75 2.57
3727 3869 7.856145 TGTGCAAAACAACCTATTTTGAATT 57.144 28.000 13.00 0.00 45.75 2.17
3728 3870 7.692088 TGTGCAAAACAACCTATTTTGAATTG 58.308 30.769 13.00 3.51 45.75 2.32
3729 3871 7.335422 TGTGCAAAACAACCTATTTTGAATTGT 59.665 29.630 13.00 0.00 45.75 2.71
3730 3872 8.180920 GTGCAAAACAACCTATTTTGAATTGTT 58.819 29.630 13.00 0.00 45.75 2.83
3731 3873 8.394121 TGCAAAACAACCTATTTTGAATTGTTC 58.606 29.630 13.00 0.00 45.75 3.18
3732 3874 7.582319 GCAAAACAACCTATTTTGAATTGTTCG 59.418 33.333 13.00 0.00 45.75 3.95
3733 3875 8.812329 CAAAACAACCTATTTTGAATTGTTCGA 58.188 29.630 4.56 0.00 45.75 3.71
3734 3876 8.934507 AAACAACCTATTTTGAATTGTTCGAA 57.065 26.923 0.00 0.00 41.39 3.71
3735 3877 8.934507 AACAACCTATTTTGAATTGTTCGAAA 57.065 26.923 0.00 7.37 44.68 3.46
3736 3878 8.347729 ACAACCTATTTTGAATTGTTCGAAAC 57.652 30.769 0.00 0.00 43.71 2.78
3737 3879 7.166804 ACAACCTATTTTGAATTGTTCGAAACG 59.833 33.333 0.00 0.00 43.71 3.60
3738 3880 6.961576 ACCTATTTTGAATTGTTCGAAACGA 58.038 32.000 0.00 0.00 43.71 3.85
3739 3881 6.854381 ACCTATTTTGAATTGTTCGAAACGAC 59.146 34.615 0.00 0.00 43.71 4.34
3740 3882 7.075741 CCTATTTTGAATTGTTCGAAACGACT 58.924 34.615 0.00 0.00 43.71 4.18
3741 3883 7.589954 CCTATTTTGAATTGTTCGAAACGACTT 59.410 33.333 0.00 0.00 43.71 3.01
3742 3884 9.588774 CTATTTTGAATTGTTCGAAACGACTTA 57.411 29.630 0.00 0.00 43.71 2.24
3743 3885 7.653523 TTTTGAATTGTTCGAAACGACTTAC 57.346 32.000 0.00 0.00 37.95 2.34
3744 3886 5.970140 TGAATTGTTCGAAACGACTTACA 57.030 34.783 0.00 0.00 34.89 2.41
3745 3887 6.347270 TGAATTGTTCGAAACGACTTACAA 57.653 33.333 0.00 10.63 38.09 2.41
3746 3888 6.773080 TGAATTGTTCGAAACGACTTACAAA 58.227 32.000 0.00 0.00 37.55 2.83
3747 3889 7.242079 TGAATTGTTCGAAACGACTTACAAAA 58.758 30.769 0.00 2.41 37.55 2.44
3748 3890 7.427030 TGAATTGTTCGAAACGACTTACAAAAG 59.573 33.333 0.00 0.00 37.55 2.27
3750 3892 5.552807 TGTTCGAAACGACTTACAAAAGTG 58.447 37.500 0.00 0.00 46.09 3.16
3751 3893 5.348179 TGTTCGAAACGACTTACAAAAGTGA 59.652 36.000 0.00 0.00 46.09 3.41
3752 3894 6.128607 TGTTCGAAACGACTTACAAAAGTGAA 60.129 34.615 0.00 0.00 46.09 3.18
3753 3895 5.788467 TCGAAACGACTTACAAAAGTGAAC 58.212 37.500 0.00 0.00 46.09 3.18
3754 3896 4.658723 CGAAACGACTTACAAAAGTGAACG 59.341 41.667 0.00 0.00 46.09 3.95
3755 3897 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
3756 3898 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
3757 3899 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
3758 3900 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
3759 3901 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
3760 3902 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
3761 3903 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
3762 3904 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
3763 3905 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
3764 3906 3.326880 ACAAAAGTGAACGGAGGGAGTAT 59.673 43.478 0.00 0.00 0.00 2.12
3765 3907 4.529377 ACAAAAGTGAACGGAGGGAGTATA 59.471 41.667 0.00 0.00 0.00 1.47
3766 3908 5.012354 ACAAAAGTGAACGGAGGGAGTATAA 59.988 40.000 0.00 0.00 0.00 0.98
3767 3909 5.750352 AAAGTGAACGGAGGGAGTATAAA 57.250 39.130 0.00 0.00 0.00 1.40
3768 3910 5.340439 AAGTGAACGGAGGGAGTATAAAG 57.660 43.478 0.00 0.00 0.00 1.85
3769 3911 4.351127 AGTGAACGGAGGGAGTATAAAGT 58.649 43.478 0.00 0.00 0.00 2.66
3770 3912 4.776308 AGTGAACGGAGGGAGTATAAAGTT 59.224 41.667 0.00 0.00 0.00 2.66
3771 3913 4.868734 GTGAACGGAGGGAGTATAAAGTTG 59.131 45.833 0.00 0.00 0.00 3.16
3772 3914 4.081309 TGAACGGAGGGAGTATAAAGTTGG 60.081 45.833 0.00 0.00 0.00 3.77
3773 3915 2.770232 ACGGAGGGAGTATAAAGTTGGG 59.230 50.000 0.00 0.00 0.00 4.12
3774 3916 2.770232 CGGAGGGAGTATAAAGTTGGGT 59.230 50.000 0.00 0.00 0.00 4.51
3775 3917 3.181468 CGGAGGGAGTATAAAGTTGGGTC 60.181 52.174 0.00 0.00 0.00 4.46
3776 3918 3.778629 GGAGGGAGTATAAAGTTGGGTCA 59.221 47.826 0.00 0.00 0.00 4.02
3777 3919 4.412528 GGAGGGAGTATAAAGTTGGGTCAT 59.587 45.833 0.00 0.00 0.00 3.06
3778 3920 5.454897 GGAGGGAGTATAAAGTTGGGTCATC 60.455 48.000 0.00 0.00 0.00 2.92
3779 3921 5.289510 AGGGAGTATAAAGTTGGGTCATCT 58.710 41.667 0.00 0.00 0.00 2.90
3780 3922 6.449956 AGGGAGTATAAAGTTGGGTCATCTA 58.550 40.000 0.00 0.00 0.00 1.98
3781 3923 7.082972 AGGGAGTATAAAGTTGGGTCATCTAT 58.917 38.462 0.00 0.00 0.00 1.98
3782 3924 7.572861 AGGGAGTATAAAGTTGGGTCATCTATT 59.427 37.037 0.00 0.00 0.00 1.73
3783 3925 8.218488 GGGAGTATAAAGTTGGGTCATCTATTT 58.782 37.037 0.00 0.00 0.00 1.40
3784 3926 9.628500 GGAGTATAAAGTTGGGTCATCTATTTT 57.372 33.333 0.00 0.00 0.00 1.82
3791 3933 8.525290 AAGTTGGGTCATCTATTTTAGAATGG 57.475 34.615 0.00 0.00 38.50 3.16
3792 3934 7.872138 AGTTGGGTCATCTATTTTAGAATGGA 58.128 34.615 0.00 0.00 38.50 3.41
3793 3935 8.506083 AGTTGGGTCATCTATTTTAGAATGGAT 58.494 33.333 0.00 0.00 42.22 3.41
3809 3951 9.527157 TTAGAATGGATGGAGTAAAATCAAACA 57.473 29.630 0.00 0.00 0.00 2.83
3811 3953 5.975693 TGGATGGAGTAAAATCAAACACC 57.024 39.130 0.00 0.00 0.00 4.16
3873 4016 0.972883 GCAGGGCATGGTAAAAACCA 59.027 50.000 0.00 0.00 44.85 3.67
3881 4024 3.616317 GCATGGTAAAAACCACCACCATC 60.616 47.826 0.00 0.00 46.42 3.51
3882 4025 2.599677 TGGTAAAAACCACCACCATCC 58.400 47.619 0.00 0.00 41.17 3.51
3883 4026 2.091278 TGGTAAAAACCACCACCATCCA 60.091 45.455 0.00 0.00 41.17 3.41
3884 4027 2.966516 GGTAAAAACCACCACCATCCAA 59.033 45.455 0.00 0.00 36.01 3.53
3885 4028 3.388350 GGTAAAAACCACCACCATCCAAA 59.612 43.478 0.00 0.00 36.01 3.28
3886 4029 3.836365 AAAAACCACCACCATCCAAAG 57.164 42.857 0.00 0.00 0.00 2.77
3887 4030 1.047801 AAACCACCACCATCCAAAGC 58.952 50.000 0.00 0.00 0.00 3.51
3888 4031 1.178534 AACCACCACCATCCAAAGCG 61.179 55.000 0.00 0.00 0.00 4.68
3889 4032 2.342650 CCACCACCATCCAAAGCGG 61.343 63.158 0.00 0.00 0.00 5.52
3890 4033 2.035626 ACCACCATCCAAAGCGGG 59.964 61.111 0.00 0.00 34.36 6.13
3891 4034 2.354729 CCACCATCCAAAGCGGGA 59.645 61.111 0.00 0.00 42.21 5.14
3892 4035 2.046285 CCACCATCCAAAGCGGGAC 61.046 63.158 0.00 0.00 40.44 4.46
3906 4049 2.193532 GGGACGAGCAGATCAGTCA 58.806 57.895 11.14 0.00 34.90 3.41
3907 4050 0.532573 GGGACGAGCAGATCAGTCAA 59.467 55.000 11.14 0.00 34.90 3.18
3908 4051 1.066858 GGGACGAGCAGATCAGTCAAA 60.067 52.381 11.14 0.00 34.90 2.69
3909 4052 2.419297 GGGACGAGCAGATCAGTCAAAT 60.419 50.000 11.14 0.00 34.90 2.32
3910 4053 2.606725 GGACGAGCAGATCAGTCAAATG 59.393 50.000 11.14 0.00 34.90 2.32
3911 4054 3.515630 GACGAGCAGATCAGTCAAATGA 58.484 45.455 0.00 0.00 34.02 2.57
3912 4055 4.118410 GACGAGCAGATCAGTCAAATGAT 58.882 43.478 0.00 0.00 42.62 2.45
3913 4056 4.511527 ACGAGCAGATCAGTCAAATGATT 58.488 39.130 0.00 0.00 40.02 2.57
3914 4057 5.664457 ACGAGCAGATCAGTCAAATGATTA 58.336 37.500 0.00 0.00 40.02 1.75
3915 4058 6.108687 ACGAGCAGATCAGTCAAATGATTAA 58.891 36.000 0.00 0.00 40.02 1.40
3916 4059 6.257411 ACGAGCAGATCAGTCAAATGATTAAG 59.743 38.462 0.00 0.00 40.02 1.85
3917 4060 6.478016 CGAGCAGATCAGTCAAATGATTAAGA 59.522 38.462 0.00 0.00 40.02 2.10
3918 4061 7.010830 CGAGCAGATCAGTCAAATGATTAAGAA 59.989 37.037 0.00 0.00 40.02 2.52
3919 4062 8.571461 AGCAGATCAGTCAAATGATTAAGAAA 57.429 30.769 0.00 0.00 40.02 2.52
3920 4063 9.017509 AGCAGATCAGTCAAATGATTAAGAAAA 57.982 29.630 0.00 0.00 40.02 2.29
3921 4064 9.798994 GCAGATCAGTCAAATGATTAAGAAAAT 57.201 29.630 0.00 0.00 40.02 1.82
3935 4078 8.665685 TGATTAAGAAAATAAAGGAAGACGAGC 58.334 33.333 0.00 0.00 0.00 5.03
3936 4079 8.794335 ATTAAGAAAATAAAGGAAGACGAGCT 57.206 30.769 0.00 0.00 0.00 4.09
3937 4080 8.617290 TTAAGAAAATAAAGGAAGACGAGCTT 57.383 30.769 0.00 0.00 40.25 3.74
3938 4081 6.487689 AGAAAATAAAGGAAGACGAGCTTG 57.512 37.500 0.00 0.00 36.83 4.01
3939 4082 6.231211 AGAAAATAAAGGAAGACGAGCTTGA 58.769 36.000 8.31 0.00 36.83 3.02
3940 4083 6.881602 AGAAAATAAAGGAAGACGAGCTTGAT 59.118 34.615 8.31 0.00 36.83 2.57
3941 4084 7.391833 AGAAAATAAAGGAAGACGAGCTTGATT 59.608 33.333 8.31 1.68 36.83 2.57
3942 4085 7.454260 AAATAAAGGAAGACGAGCTTGATTT 57.546 32.000 8.31 0.99 36.83 2.17
3943 4086 4.756084 AAAGGAAGACGAGCTTGATTTG 57.244 40.909 8.31 0.00 36.83 2.32
3944 4087 3.685139 AGGAAGACGAGCTTGATTTGA 57.315 42.857 8.31 0.00 36.83 2.69
3945 4088 3.594134 AGGAAGACGAGCTTGATTTGAG 58.406 45.455 8.31 0.00 36.83 3.02
3946 4089 2.675348 GGAAGACGAGCTTGATTTGAGG 59.325 50.000 8.31 0.00 36.83 3.86
3947 4090 3.589988 GAAGACGAGCTTGATTTGAGGA 58.410 45.455 8.31 0.00 36.83 3.71
3948 4091 3.685139 AGACGAGCTTGATTTGAGGAA 57.315 42.857 8.31 0.00 0.00 3.36
3949 4092 4.008074 AGACGAGCTTGATTTGAGGAAA 57.992 40.909 8.31 0.00 0.00 3.13
3950 4093 4.583871 AGACGAGCTTGATTTGAGGAAAT 58.416 39.130 8.31 0.00 34.29 2.17
3951 4094 4.394300 AGACGAGCTTGATTTGAGGAAATG 59.606 41.667 8.31 0.00 31.58 2.32
3952 4095 4.326826 ACGAGCTTGATTTGAGGAAATGA 58.673 39.130 8.31 0.00 31.58 2.57
3953 4096 4.761739 ACGAGCTTGATTTGAGGAAATGAA 59.238 37.500 8.31 0.00 31.58 2.57
3954 4097 5.241506 ACGAGCTTGATTTGAGGAAATGAAA 59.758 36.000 8.31 0.00 31.58 2.69
3955 4098 5.798934 CGAGCTTGATTTGAGGAAATGAAAG 59.201 40.000 0.00 0.00 31.58 2.62
3956 4099 6.569226 CGAGCTTGATTTGAGGAAATGAAAGT 60.569 38.462 0.00 0.00 31.58 2.66
3957 4100 7.361201 CGAGCTTGATTTGAGGAAATGAAAGTA 60.361 37.037 0.00 0.00 31.58 2.24
3958 4101 7.824672 AGCTTGATTTGAGGAAATGAAAGTAG 58.175 34.615 0.00 0.00 31.58 2.57
3959 4102 7.667219 AGCTTGATTTGAGGAAATGAAAGTAGA 59.333 33.333 0.00 0.00 31.58 2.59
3960 4103 7.967303 GCTTGATTTGAGGAAATGAAAGTAGAG 59.033 37.037 0.00 0.00 31.58 2.43
3961 4104 9.224267 CTTGATTTGAGGAAATGAAAGTAGAGA 57.776 33.333 0.00 0.00 31.58 3.10
3962 4105 8.783833 TGATTTGAGGAAATGAAAGTAGAGAG 57.216 34.615 0.00 0.00 31.58 3.20
3963 4106 8.378565 TGATTTGAGGAAATGAAAGTAGAGAGT 58.621 33.333 0.00 0.00 31.58 3.24
3964 4107 9.225436 GATTTGAGGAAATGAAAGTAGAGAGTT 57.775 33.333 0.00 0.00 31.58 3.01
3965 4108 7.969536 TTGAGGAAATGAAAGTAGAGAGTTG 57.030 36.000 0.00 0.00 0.00 3.16
3966 4109 6.467677 TGAGGAAATGAAAGTAGAGAGTTGG 58.532 40.000 0.00 0.00 0.00 3.77
3967 4110 6.270000 TGAGGAAATGAAAGTAGAGAGTTGGA 59.730 38.462 0.00 0.00 0.00 3.53
3968 4111 6.706295 AGGAAATGAAAGTAGAGAGTTGGAG 58.294 40.000 0.00 0.00 0.00 3.86
3969 4112 6.498651 AGGAAATGAAAGTAGAGAGTTGGAGA 59.501 38.462 0.00 0.00 0.00 3.71
3970 4113 6.592220 GGAAATGAAAGTAGAGAGTTGGAGAC 59.408 42.308 0.00 0.00 0.00 3.36
3971 4114 4.768130 TGAAAGTAGAGAGTTGGAGACG 57.232 45.455 0.00 0.00 0.00 4.18
3972 4115 3.506455 TGAAAGTAGAGAGTTGGAGACGG 59.494 47.826 0.00 0.00 0.00 4.79
3973 4116 2.131776 AGTAGAGAGTTGGAGACGGG 57.868 55.000 0.00 0.00 0.00 5.28
3974 4117 1.634459 AGTAGAGAGTTGGAGACGGGA 59.366 52.381 0.00 0.00 0.00 5.14
3975 4118 2.018515 GTAGAGAGTTGGAGACGGGAG 58.981 57.143 0.00 0.00 0.00 4.30
3976 4119 0.968393 AGAGAGTTGGAGACGGGAGC 60.968 60.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.069227 GGAATGAACGGTGTTGTCTGC 60.069 52.381 0.00 0.00 0.00 4.26
1 2 2.224079 CAGGAATGAACGGTGTTGTCTG 59.776 50.000 0.00 0.00 0.00 3.51
2 3 2.494059 CAGGAATGAACGGTGTTGTCT 58.506 47.619 0.00 0.00 0.00 3.41
3 4 1.069227 GCAGGAATGAACGGTGTTGTC 60.069 52.381 0.00 0.00 0.00 3.18
4 5 0.951558 GCAGGAATGAACGGTGTTGT 59.048 50.000 0.00 0.00 0.00 3.32
5 6 0.950836 TGCAGGAATGAACGGTGTTG 59.049 50.000 0.00 0.00 0.00 3.33
6 7 1.812571 GATGCAGGAATGAACGGTGTT 59.187 47.619 0.00 0.00 0.00 3.32
7 8 1.453155 GATGCAGGAATGAACGGTGT 58.547 50.000 0.00 0.00 0.00 4.16
8 9 0.374758 CGATGCAGGAATGAACGGTG 59.625 55.000 0.00 0.00 0.00 4.94
9 10 0.036388 ACGATGCAGGAATGAACGGT 60.036 50.000 0.00 0.00 0.00 4.83
10 11 0.374758 CACGATGCAGGAATGAACGG 59.625 55.000 0.00 0.00 0.00 4.44
11 12 1.078709 ACACGATGCAGGAATGAACG 58.921 50.000 0.00 0.00 0.00 3.95
12 13 1.131126 CCACACGATGCAGGAATGAAC 59.869 52.381 0.00 0.00 0.00 3.18
13 14 1.452110 CCACACGATGCAGGAATGAA 58.548 50.000 0.00 0.00 0.00 2.57
14 15 0.392863 CCCACACGATGCAGGAATGA 60.393 55.000 0.00 0.00 0.00 2.57
15 16 1.378882 CCCCACACGATGCAGGAATG 61.379 60.000 0.00 0.00 0.00 2.67
16 17 1.077501 CCCCACACGATGCAGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
17 18 2.063015 AACCCCACACGATGCAGGAA 62.063 55.000 0.00 0.00 0.00 3.36
18 19 2.463589 GAACCCCACACGATGCAGGA 62.464 60.000 0.00 0.00 0.00 3.86
19 20 2.034066 AACCCCACACGATGCAGG 59.966 61.111 0.00 0.00 0.00 4.85
20 21 2.390599 CGAACCCCACACGATGCAG 61.391 63.158 0.00 0.00 0.00 4.41
21 22 2.358125 CGAACCCCACACGATGCA 60.358 61.111 0.00 0.00 0.00 3.96
22 23 3.124921 CCGAACCCCACACGATGC 61.125 66.667 0.00 0.00 0.00 3.91
23 24 3.124921 GCCGAACCCCACACGATG 61.125 66.667 0.00 0.00 0.00 3.84
24 25 4.404098 GGCCGAACCCCACACGAT 62.404 66.667 0.00 0.00 0.00 3.73
29 30 3.682292 CTAGCTGGCCGAACCCCAC 62.682 68.421 0.00 0.00 37.83 4.61
30 31 3.399181 CTAGCTGGCCGAACCCCA 61.399 66.667 0.00 0.00 37.83 4.96
31 32 3.400054 ACTAGCTGGCCGAACCCC 61.400 66.667 0.00 0.00 37.83 4.95
32 33 2.125106 CACTAGCTGGCCGAACCC 60.125 66.667 0.00 0.00 37.83 4.11
33 34 1.448013 GACACTAGCTGGCCGAACC 60.448 63.158 0.00 0.00 39.84 3.62
34 35 1.805945 CGACACTAGCTGGCCGAAC 60.806 63.158 0.00 0.00 0.00 3.95
35 36 2.209064 GACGACACTAGCTGGCCGAA 62.209 60.000 12.54 0.00 0.00 4.30
36 37 2.675423 ACGACACTAGCTGGCCGA 60.675 61.111 12.54 0.00 0.00 5.54
37 38 2.202623 GACGACACTAGCTGGCCG 60.203 66.667 0.00 0.55 0.00 6.13
38 39 2.184579 GGACGACACTAGCTGGCC 59.815 66.667 0.00 0.00 0.00 5.36
39 40 2.202623 CGGACGACACTAGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
40 41 1.136984 GACGGACGACACTAGCTGG 59.863 63.158 0.00 0.00 0.00 4.85
41 42 1.136984 GGACGGACGACACTAGCTG 59.863 63.158 0.00 0.00 0.00 4.24
42 43 1.303074 TGGACGGACGACACTAGCT 60.303 57.895 0.00 0.00 0.00 3.32
43 44 1.136984 CTGGACGGACGACACTAGC 59.863 63.158 0.00 0.00 0.00 3.42
44 45 1.136984 GCTGGACGGACGACACTAG 59.863 63.158 0.00 0.00 0.00 2.57
45 46 1.583495 CTGCTGGACGGACGACACTA 61.583 60.000 0.00 0.00 0.00 2.74
46 47 2.910479 TGCTGGACGGACGACACT 60.910 61.111 0.00 0.00 0.00 3.55
47 48 2.430921 CTGCTGGACGGACGACAC 60.431 66.667 0.00 0.00 0.00 3.67
48 49 2.023414 AAACTGCTGGACGGACGACA 62.023 55.000 0.00 0.00 0.00 4.35
49 50 1.282930 GAAACTGCTGGACGGACGAC 61.283 60.000 0.00 0.00 0.00 4.34
50 51 1.006571 GAAACTGCTGGACGGACGA 60.007 57.895 0.00 0.00 0.00 4.20
51 52 2.372690 CGAAACTGCTGGACGGACG 61.373 63.158 0.00 0.00 0.00 4.79
52 53 0.389948 ATCGAAACTGCTGGACGGAC 60.390 55.000 0.00 0.00 0.00 4.79
53 54 0.108804 GATCGAAACTGCTGGACGGA 60.109 55.000 0.00 0.00 0.00 4.69
54 55 0.389817 TGATCGAAACTGCTGGACGG 60.390 55.000 0.00 0.00 0.00 4.79
55 56 0.716108 GTGATCGAAACTGCTGGACG 59.284 55.000 0.00 0.00 0.00 4.79
56 57 1.079503 GGTGATCGAAACTGCTGGAC 58.920 55.000 0.00 0.00 0.00 4.02
57 58 0.389817 CGGTGATCGAAACTGCTGGA 60.390 55.000 0.00 0.00 42.43 3.86
58 59 0.389817 TCGGTGATCGAAACTGCTGG 60.390 55.000 5.73 0.00 45.86 4.85
59 60 3.122150 TCGGTGATCGAAACTGCTG 57.878 52.632 5.73 0.00 45.86 4.41
68 69 2.456119 GCTGCTGGTTCGGTGATCG 61.456 63.158 0.00 0.00 40.90 3.69
108 109 4.485208 GCGCGCGTCTGTTACAGC 62.485 66.667 32.35 6.21 0.00 4.40
135 137 7.759886 TGTTATTGTGATGAGTAGTAAGCAGAC 59.240 37.037 0.00 0.00 0.00 3.51
145 149 9.114952 TGTTTGAGTTTGTTATTGTGATGAGTA 57.885 29.630 0.00 0.00 0.00 2.59
147 151 7.914871 TGTGTTTGAGTTTGTTATTGTGATGAG 59.085 33.333 0.00 0.00 0.00 2.90
148 152 7.766283 TGTGTTTGAGTTTGTTATTGTGATGA 58.234 30.769 0.00 0.00 0.00 2.92
149 153 7.984002 TGTGTTTGAGTTTGTTATTGTGATG 57.016 32.000 0.00 0.00 0.00 3.07
150 154 9.033481 CAATGTGTTTGAGTTTGTTATTGTGAT 57.967 29.630 0.00 0.00 37.53 3.06
172 178 2.129607 GTTGCCTCAAAGTGTGCAATG 58.870 47.619 0.00 0.00 44.57 2.82
173 179 1.755959 TGTTGCCTCAAAGTGTGCAAT 59.244 42.857 0.00 0.00 44.57 3.56
204 210 4.269363 GTCGCCGCTATTTTACTTGTGTAT 59.731 41.667 0.00 0.00 0.00 2.29
205 211 3.613737 GTCGCCGCTATTTTACTTGTGTA 59.386 43.478 0.00 0.00 0.00 2.90
222 228 2.501223 TTCCCTCATCACGTGTCGCC 62.501 60.000 16.51 0.00 0.00 5.54
235 241 0.968393 AGTCTCTGACGCCTTCCCTC 60.968 60.000 0.00 0.00 37.67 4.30
249 255 2.370885 GCCGTCGGCTTTAAGTCTC 58.629 57.895 28.98 0.00 46.69 3.36
295 312 2.362717 GCGAGGGCTCTGAATTAGTACT 59.637 50.000 0.00 0.00 35.83 2.73
296 313 2.546162 GGCGAGGGCTCTGAATTAGTAC 60.546 54.545 0.00 0.00 39.81 2.73
297 314 1.687123 GGCGAGGGCTCTGAATTAGTA 59.313 52.381 0.00 0.00 39.81 1.82
298 315 0.466124 GGCGAGGGCTCTGAATTAGT 59.534 55.000 0.00 0.00 39.81 2.24
327 354 1.141591 GGCTGCGGCAATTCGAAATG 61.142 55.000 21.31 8.90 40.87 2.32
380 407 1.933247 CTTTTGTTTTGCCTGCCGAA 58.067 45.000 0.00 0.00 0.00 4.30
409 436 5.696724 TCTTCTCTTTCGCTTTTCTTTCGAT 59.303 36.000 0.00 0.00 31.96 3.59
410 437 5.047847 TCTTCTCTTTCGCTTTTCTTTCGA 58.952 37.500 0.00 0.00 0.00 3.71
411 438 5.330271 TCTTCTCTTTCGCTTTTCTTTCG 57.670 39.130 0.00 0.00 0.00 3.46
412 439 8.283291 TGTAATCTTCTCTTTCGCTTTTCTTTC 58.717 33.333 0.00 0.00 0.00 2.62
413 440 8.154649 TGTAATCTTCTCTTTCGCTTTTCTTT 57.845 30.769 0.00 0.00 0.00 2.52
416 443 6.516695 CGTTGTAATCTTCTCTTTCGCTTTTC 59.483 38.462 0.00 0.00 0.00 2.29
417 444 6.363473 CGTTGTAATCTTCTCTTTCGCTTTT 58.637 36.000 0.00 0.00 0.00 2.27
459 486 0.105964 CCTCCCTTCCTCCTCGATCA 60.106 60.000 0.00 0.00 0.00 2.92
469 496 2.123428 TACGCTACGCCTCCCTTCC 61.123 63.158 0.00 0.00 0.00 3.46
536 564 3.918220 GTGATTCGCTCGCCGCTG 61.918 66.667 0.00 0.00 36.73 5.18
539 567 3.315521 CTCGTGATTCGCTCGCCG 61.316 66.667 0.00 0.00 39.67 6.46
540 568 2.884087 TTCCTCGTGATTCGCTCGCC 62.884 60.000 0.00 0.00 39.67 5.54
564 592 4.227134 CACCTCCATCTCCCGGCG 62.227 72.222 0.00 0.00 0.00 6.46
631 659 5.382618 ACGTAGTACTACCAAAGTCCAAG 57.617 43.478 24.06 10.59 41.94 3.61
652 680 3.626154 GCAGAGAGTGCGTACCTAC 57.374 57.895 0.00 0.00 43.99 3.18
661 689 3.993081 CCAAAGTCAGTTAGCAGAGAGTG 59.007 47.826 0.00 0.00 0.00 3.51
662 690 3.556004 GCCAAAGTCAGTTAGCAGAGAGT 60.556 47.826 0.00 0.00 0.00 3.24
663 691 2.999355 GCCAAAGTCAGTTAGCAGAGAG 59.001 50.000 0.00 0.00 0.00 3.20
664 692 2.289694 GGCCAAAGTCAGTTAGCAGAGA 60.290 50.000 0.00 0.00 0.00 3.10
706 734 2.286365 ATTTTCTTTCCGCTGGGTCA 57.714 45.000 0.00 0.00 33.83 4.02
707 735 3.119602 GGTTATTTTCTTTCCGCTGGGTC 60.120 47.826 0.00 0.00 33.83 4.46
708 736 2.823747 GGTTATTTTCTTTCCGCTGGGT 59.176 45.455 0.00 0.00 33.83 4.51
709 737 2.823154 TGGTTATTTTCTTTCCGCTGGG 59.177 45.455 0.00 0.00 0.00 4.45
710 738 4.022329 ACTTGGTTATTTTCTTTCCGCTGG 60.022 41.667 0.00 0.00 0.00 4.85
712 740 4.825085 TCACTTGGTTATTTTCTTTCCGCT 59.175 37.500 0.00 0.00 0.00 5.52
713 741 4.915667 GTCACTTGGTTATTTTCTTTCCGC 59.084 41.667 0.00 0.00 0.00 5.54
714 742 5.144359 CGTCACTTGGTTATTTTCTTTCCG 58.856 41.667 0.00 0.00 0.00 4.30
724 767 1.019278 CCGCTGCGTCACTTGGTTAT 61.019 55.000 21.59 0.00 0.00 1.89
725 768 1.666553 CCGCTGCGTCACTTGGTTA 60.667 57.895 21.59 0.00 0.00 2.85
823 867 3.860930 TTTCCCCCAACGCCAGAGC 62.861 63.158 0.00 0.00 0.00 4.09
836 880 1.961394 AGGACGGCTTTTCTTTTTCCC 59.039 47.619 0.00 0.00 0.00 3.97
844 888 4.659088 GTGCTTAAATAGGACGGCTTTTC 58.341 43.478 0.00 0.00 35.39 2.29
845 889 4.696899 GTGCTTAAATAGGACGGCTTTT 57.303 40.909 0.00 0.00 35.39 2.27
888 932 4.927782 TGTGTGTGTGAGCGGGCC 62.928 66.667 0.00 0.00 0.00 5.80
905 951 1.735700 CGAGAGTGTGTGTGTGTGTGT 60.736 52.381 0.00 0.00 0.00 3.72
907 953 0.806102 GCGAGAGTGTGTGTGTGTGT 60.806 55.000 0.00 0.00 0.00 3.72
909 955 0.249073 GAGCGAGAGTGTGTGTGTGT 60.249 55.000 0.00 0.00 0.00 3.72
911 957 1.109920 AGGAGCGAGAGTGTGTGTGT 61.110 55.000 0.00 0.00 0.00 3.72
913 959 0.538516 AGAGGAGCGAGAGTGTGTGT 60.539 55.000 0.00 0.00 0.00 3.72
915 961 1.302383 CGAGAGGAGCGAGAGTGTGT 61.302 60.000 0.00 0.00 0.00 3.72
917 963 2.403378 GCGAGAGGAGCGAGAGTGT 61.403 63.158 0.00 0.00 0.00 3.55
919 965 1.817941 GAGCGAGAGGAGCGAGAGT 60.818 63.158 0.00 0.00 40.04 3.24
929 975 0.037882 TGGCAAGACAAGAGCGAGAG 60.038 55.000 0.00 0.00 0.00 3.20
930 976 0.319900 GTGGCAAGACAAGAGCGAGA 60.320 55.000 0.00 0.00 0.00 4.04
931 977 0.601046 TGTGGCAAGACAAGAGCGAG 60.601 55.000 0.00 0.00 0.00 5.03
932 978 0.880278 GTGTGGCAAGACAAGAGCGA 60.880 55.000 0.00 0.00 0.00 4.93
933 979 1.159713 TGTGTGGCAAGACAAGAGCG 61.160 55.000 0.00 0.00 0.00 5.03
934 980 0.590195 CTGTGTGGCAAGACAAGAGC 59.410 55.000 0.00 0.00 0.00 4.09
935 981 1.233019 CCTGTGTGGCAAGACAAGAG 58.767 55.000 0.00 0.00 0.00 2.85
936 982 3.402186 CCTGTGTGGCAAGACAAGA 57.598 52.632 0.00 0.00 0.00 3.02
1209 1297 3.533691 GCGCACGACGTACAGAGC 61.534 66.667 0.30 0.00 46.11 4.09
1462 1566 2.114825 GGTAGTTAATTCGGACGCGAG 58.885 52.381 15.93 3.50 0.00 5.03
1481 1585 4.741781 CGCAAGAAACTGCCGCGG 62.742 66.667 24.05 24.05 42.13 6.46
1517 1621 2.132762 TGAGAGAAAGCGACGGTTTTC 58.867 47.619 24.17 20.74 41.90 2.29
1625 1729 2.264166 GGCTGCTCTTCTCGTGCT 59.736 61.111 0.00 0.00 33.42 4.40
1626 1730 2.047844 TGGCTGCTCTTCTCGTGC 60.048 61.111 0.00 0.00 0.00 5.34
1627 1731 0.458197 CTCTGGCTGCTCTTCTCGTG 60.458 60.000 0.00 0.00 0.00 4.35
1690 1794 2.706071 GGATGGAGGGAGGGAGGT 59.294 66.667 0.00 0.00 0.00 3.85
1703 1807 0.193069 ATCTGAGGGAGGGAGGGATG 59.807 60.000 0.00 0.00 0.00 3.51
1704 1808 0.955752 AATCTGAGGGAGGGAGGGAT 59.044 55.000 0.00 0.00 0.00 3.85
1705 1809 0.266152 GAATCTGAGGGAGGGAGGGA 59.734 60.000 0.00 0.00 0.00 4.20
1706 1810 0.766288 GGAATCTGAGGGAGGGAGGG 60.766 65.000 0.00 0.00 0.00 4.30
1707 1811 0.030705 TGGAATCTGAGGGAGGGAGG 60.031 60.000 0.00 0.00 0.00 4.30
1708 1812 2.106166 CAATGGAATCTGAGGGAGGGAG 59.894 54.545 0.00 0.00 0.00 4.30
1722 1826 1.065199 AGCTGAAGCCGATCAATGGAA 60.065 47.619 0.00 0.00 43.38 3.53
1760 1864 5.475564 GGGCAGAGACCTATAGTAGAGAAAG 59.524 48.000 0.00 0.00 0.00 2.62
1821 1925 1.666311 GCGAGCTCTACGACTTTGTGT 60.666 52.381 12.85 0.00 0.00 3.72
1837 1941 4.100529 CAAGCTCCATTGTTAAATGCGAG 58.899 43.478 0.00 10.23 41.66 5.03
1912 2018 4.235762 TGCTAATCTCGGCCGGGC 62.236 66.667 27.83 20.04 0.00 6.13
1917 2023 2.421877 TAGGCGCTGCTAATCTCGGC 62.422 60.000 7.64 0.00 45.88 5.54
1920 2026 3.134458 ACAATTAGGCGCTGCTAATCTC 58.866 45.455 16.18 0.00 0.00 2.75
2049 2174 9.817809 CACACTAACAAGTCCACACTATTATAT 57.182 33.333 0.00 0.00 30.14 0.86
2074 2199 1.883732 GCCTGTCTCTACGTGCTCA 59.116 57.895 0.00 0.00 0.00 4.26
2075 2200 1.226435 CGCCTGTCTCTACGTGCTC 60.226 63.158 0.00 0.00 0.00 4.26
2117 2242 2.671396 CGTCTAAGCATGTAACACCCAC 59.329 50.000 0.00 0.00 0.00 4.61
2229 2354 7.138736 CCGGTTAATAATCATCCAATTCACAC 58.861 38.462 0.00 0.00 0.00 3.82
2266 2391 1.953138 GTCCTCATCATCTGCGGCG 60.953 63.158 0.51 0.51 29.21 6.46
2497 2622 4.200283 GACGAGGAGGAGCAGCGG 62.200 72.222 0.00 0.00 0.00 5.52
2516 2641 4.409588 CGGTGTCGCGCGTTTGAG 62.410 66.667 30.98 15.68 0.00 3.02
2566 2691 2.262915 GGTGGAGGCGACTGTGAG 59.737 66.667 0.00 0.00 44.43 3.51
2597 2722 6.150318 ACGCCTTAGATTATGTGATTAGACG 58.850 40.000 0.00 0.00 0.00 4.18
2619 2744 4.634991 GACGCCAGTCAAAGTTAATTACG 58.365 43.478 0.00 0.00 46.32 3.18
2975 3100 0.317603 GCTGCAATGATGGACGCATC 60.318 55.000 0.00 0.00 33.15 3.91
2980 3105 1.226491 GCGTGCTGCAATGATGGAC 60.226 57.895 2.77 0.00 45.45 4.02
3030 3155 1.334689 GCACACCATCATCATGCATCG 60.335 52.381 0.00 0.00 36.30 3.84
3031 3156 1.954382 AGCACACCATCATCATGCATC 59.046 47.619 0.00 0.00 38.79 3.91
3032 3157 1.954382 GAGCACACCATCATCATGCAT 59.046 47.619 0.00 0.00 38.79 3.96
3046 3171 1.136305 GGCTAATCTACACGGAGCACA 59.864 52.381 0.00 0.00 34.76 4.57
3049 3174 0.318784 CGGGCTAATCTACACGGAGC 60.319 60.000 0.00 0.00 0.00 4.70
3078 3203 1.493950 CTAGCTAGCCATGCACGCAC 61.494 60.000 12.13 0.00 0.00 5.34
3079 3204 1.227350 CTAGCTAGCCATGCACGCA 60.227 57.895 12.13 0.00 0.00 5.24
3080 3205 0.320247 ATCTAGCTAGCCATGCACGC 60.320 55.000 16.35 0.00 0.00 5.34
3081 3206 2.489722 TCTATCTAGCTAGCCATGCACG 59.510 50.000 16.35 0.00 0.00 5.34
3124 3249 3.252944 GGAACTCGGGATACTGCTACTAC 59.747 52.174 0.00 0.00 45.18 2.73
3125 3250 3.484407 GGAACTCGGGATACTGCTACTA 58.516 50.000 0.00 0.00 45.18 1.82
3126 3251 2.308690 GGAACTCGGGATACTGCTACT 58.691 52.381 0.00 0.00 45.18 2.57
3152 3284 8.306761 TGATGTGATCGAGCATATAATTACACT 58.693 33.333 13.08 0.00 0.00 3.55
3172 3304 0.979665 ACCCACTCACTCCTGATGTG 59.020 55.000 0.00 0.00 36.82 3.21
3177 3312 0.319728 CACTGACCCACTCACTCCTG 59.680 60.000 0.00 0.00 0.00 3.86
3180 3315 2.300152 TCATTCACTGACCCACTCACTC 59.700 50.000 0.00 0.00 0.00 3.51
3181 3316 2.329267 TCATTCACTGACCCACTCACT 58.671 47.619 0.00 0.00 0.00 3.41
3182 3317 2.839486 TCATTCACTGACCCACTCAC 57.161 50.000 0.00 0.00 0.00 3.51
3183 3318 5.497464 TTATTCATTCACTGACCCACTCA 57.503 39.130 0.00 0.00 32.17 3.41
3192 3327 9.880157 AAATGGAAGGATTTTATTCATTCACTG 57.120 29.630 1.95 0.00 37.97 3.66
3237 3373 6.674278 GCATCCGAGAAGAAGAAAGATCAAAC 60.674 42.308 0.00 0.00 0.00 2.93
3247 3383 2.728007 TCAGAGCATCCGAGAAGAAGA 58.272 47.619 0.00 0.00 33.66 2.87
3248 3384 3.731652 ATCAGAGCATCCGAGAAGAAG 57.268 47.619 0.00 0.00 33.66 2.85
3249 3385 4.844998 CTATCAGAGCATCCGAGAAGAA 57.155 45.455 0.00 0.00 33.66 2.52
3283 3419 0.179108 GGACGGACGATCCAAGGAAG 60.179 60.000 0.00 0.00 35.91 3.46
3338 3474 2.283173 CAAGGACAAGGGGCCACC 60.283 66.667 0.00 0.57 40.67 4.61
3340 3476 2.520458 CACAAGGACAAGGGGCCA 59.480 61.111 4.39 0.00 0.00 5.36
3341 3477 2.991540 GCACAAGGACAAGGGGCC 60.992 66.667 0.00 0.00 0.00 5.80
3342 3478 1.973812 GAGCACAAGGACAAGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
3343 3479 1.303643 GGAGCACAAGGACAAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
3347 3483 1.347707 CTACCAGGAGCACAAGGACAA 59.652 52.381 0.00 0.00 0.00 3.18
3382 3518 1.345856 GTATGCGGCCGTAAACACG 59.654 57.895 28.70 0.00 0.00 4.49
3383 3519 0.741927 AGGTATGCGGCCGTAAACAC 60.742 55.000 28.70 20.39 0.00 3.32
3384 3520 0.822811 TAGGTATGCGGCCGTAAACA 59.177 50.000 28.70 16.76 0.00 2.83
3385 3521 1.211743 GTAGGTATGCGGCCGTAAAC 58.788 55.000 28.70 20.63 0.00 2.01
3462 3598 1.587547 GAGGCAGCTCGAATTAAGGG 58.412 55.000 0.00 0.00 0.00 3.95
3486 3625 5.008331 AAAGATCTCATGCAAAGAGCTTGA 58.992 37.500 24.85 8.38 45.91 3.02
3487 3626 4.966965 AAGATCTCATGCAAAGAGCTTG 57.033 40.909 24.02 3.84 45.16 4.01
3489 3628 5.979288 AAAAAGATCTCATGCAAAGAGCT 57.021 34.783 12.89 12.89 45.94 4.09
3533 3672 3.070878 TGTGGTATGCTCAAGTCAAGTCA 59.929 43.478 0.00 0.00 0.00 3.41
3581 3723 2.373224 GAAAGAAGCCATTCCAGAGGG 58.627 52.381 0.00 0.00 35.94 4.30
3602 3744 8.445493 ACGGAGGAAGTATATTTTAAACAAACG 58.555 33.333 0.00 0.00 0.00 3.60
3617 3759 6.155565 TCATCTATTTTGGAACGGAGGAAGTA 59.844 38.462 0.00 0.00 0.00 2.24
3618 3760 4.903045 TCTATTTTGGAACGGAGGAAGT 57.097 40.909 0.00 0.00 0.00 3.01
3619 3761 5.294552 GTCATCTATTTTGGAACGGAGGAAG 59.705 44.000 0.00 0.00 0.00 3.46
3620 3762 5.045869 AGTCATCTATTTTGGAACGGAGGAA 60.046 40.000 0.00 0.00 0.00 3.36
3621 3763 4.469945 AGTCATCTATTTTGGAACGGAGGA 59.530 41.667 0.00 0.00 0.00 3.71
3622 3764 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3623 3765 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3624 3766 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3625 3767 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3626 3768 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3672 3814 9.658799 CTGAAAGGTCTTATAGAAATGAACAGA 57.341 33.333 0.00 0.00 0.00 3.41
3673 3815 9.658799 TCTGAAAGGTCTTATAGAAATGAACAG 57.341 33.333 0.00 0.00 0.00 3.16
3674 3816 9.436957 GTCTGAAAGGTCTTATAGAAATGAACA 57.563 33.333 0.00 0.00 0.00 3.18
3675 3817 9.436957 TGTCTGAAAGGTCTTATAGAAATGAAC 57.563 33.333 0.00 0.00 0.00 3.18
3679 3821 9.965902 ACATTGTCTGAAAGGTCTTATAGAAAT 57.034 29.630 0.00 0.00 0.00 2.17
3680 3822 9.219603 CACATTGTCTGAAAGGTCTTATAGAAA 57.780 33.333 0.00 0.00 0.00 2.52
3681 3823 7.334421 GCACATTGTCTGAAAGGTCTTATAGAA 59.666 37.037 0.00 0.00 0.00 2.10
3682 3824 6.818644 GCACATTGTCTGAAAGGTCTTATAGA 59.181 38.462 0.00 0.00 0.00 1.98
3683 3825 6.595326 TGCACATTGTCTGAAAGGTCTTATAG 59.405 38.462 0.00 0.00 0.00 1.31
3684 3826 6.472016 TGCACATTGTCTGAAAGGTCTTATA 58.528 36.000 0.00 0.00 0.00 0.98
3685 3827 5.316167 TGCACATTGTCTGAAAGGTCTTAT 58.684 37.500 0.00 0.00 0.00 1.73
3686 3828 4.713553 TGCACATTGTCTGAAAGGTCTTA 58.286 39.130 0.00 0.00 0.00 2.10
3687 3829 3.554934 TGCACATTGTCTGAAAGGTCTT 58.445 40.909 0.00 0.00 0.00 3.01
3688 3830 3.213206 TGCACATTGTCTGAAAGGTCT 57.787 42.857 0.00 0.00 0.00 3.85
3689 3831 3.988379 TTGCACATTGTCTGAAAGGTC 57.012 42.857 0.00 0.00 0.00 3.85
3690 3832 4.081752 TGTTTTGCACATTGTCTGAAAGGT 60.082 37.500 0.00 0.00 0.00 3.50
3691 3833 4.431809 TGTTTTGCACATTGTCTGAAAGG 58.568 39.130 0.00 0.00 0.00 3.11
3692 3834 5.220453 GGTTGTTTTGCACATTGTCTGAAAG 60.220 40.000 0.00 0.00 34.43 2.62
3693 3835 4.629200 GGTTGTTTTGCACATTGTCTGAAA 59.371 37.500 0.00 0.00 34.43 2.69
3694 3836 4.081752 AGGTTGTTTTGCACATTGTCTGAA 60.082 37.500 0.00 0.00 34.43 3.02
3695 3837 3.446873 AGGTTGTTTTGCACATTGTCTGA 59.553 39.130 0.00 0.00 34.43 3.27
3696 3838 3.784338 AGGTTGTTTTGCACATTGTCTG 58.216 40.909 0.00 0.00 34.43 3.51
3697 3839 5.789643 ATAGGTTGTTTTGCACATTGTCT 57.210 34.783 0.00 0.00 34.43 3.41
3698 3840 6.843069 AAATAGGTTGTTTTGCACATTGTC 57.157 33.333 0.00 0.00 34.43 3.18
3699 3841 6.820656 TCAAAATAGGTTGTTTTGCACATTGT 59.179 30.769 6.49 0.00 43.04 2.71
3700 3842 7.244166 TCAAAATAGGTTGTTTTGCACATTG 57.756 32.000 6.49 0.00 43.04 2.82
3701 3843 7.856145 TTCAAAATAGGTTGTTTTGCACATT 57.144 28.000 6.49 0.00 43.04 2.71
3702 3844 8.344098 CAATTCAAAATAGGTTGTTTTGCACAT 58.656 29.630 6.49 0.00 43.04 3.21
3703 3845 7.335422 ACAATTCAAAATAGGTTGTTTTGCACA 59.665 29.630 6.49 0.00 43.04 4.57
3704 3846 7.693020 ACAATTCAAAATAGGTTGTTTTGCAC 58.307 30.769 6.49 0.00 43.04 4.57
3705 3847 7.856145 ACAATTCAAAATAGGTTGTTTTGCA 57.144 28.000 6.49 0.00 43.04 4.08
3706 3848 7.582319 CGAACAATTCAAAATAGGTTGTTTTGC 59.418 33.333 6.49 0.00 43.04 3.68
3707 3849 8.812329 TCGAACAATTCAAAATAGGTTGTTTTG 58.188 29.630 5.27 5.27 44.10 2.44
3708 3850 8.934507 TCGAACAATTCAAAATAGGTTGTTTT 57.065 26.923 3.67 0.00 41.50 2.43
3709 3851 8.934507 TTCGAACAATTCAAAATAGGTTGTTT 57.065 26.923 0.00 0.00 41.50 2.83
3710 3852 8.813282 GTTTCGAACAATTCAAAATAGGTTGTT 58.187 29.630 0.00 1.86 43.39 2.83
3711 3853 7.166804 CGTTTCGAACAATTCAAAATAGGTTGT 59.833 33.333 0.00 0.00 34.74 3.32
3712 3854 7.377397 TCGTTTCGAACAATTCAAAATAGGTTG 59.623 33.333 0.00 0.00 31.06 3.77
3713 3855 7.377662 GTCGTTTCGAACAATTCAAAATAGGTT 59.622 33.333 0.00 0.00 37.72 3.50
3714 3856 6.854381 GTCGTTTCGAACAATTCAAAATAGGT 59.146 34.615 0.00 0.00 37.72 3.08
3715 3857 7.075741 AGTCGTTTCGAACAATTCAAAATAGG 58.924 34.615 0.00 0.00 37.72 2.57
3716 3858 8.488979 AAGTCGTTTCGAACAATTCAAAATAG 57.511 30.769 0.00 0.00 37.72 1.73
3717 3859 9.372541 GTAAGTCGTTTCGAACAATTCAAAATA 57.627 29.630 0.00 0.00 37.72 1.40
3718 3860 7.911205 TGTAAGTCGTTTCGAACAATTCAAAAT 59.089 29.630 0.00 0.00 37.72 1.82
3719 3861 7.242079 TGTAAGTCGTTTCGAACAATTCAAAA 58.758 30.769 0.00 0.00 37.72 2.44
3720 3862 6.773080 TGTAAGTCGTTTCGAACAATTCAAA 58.227 32.000 0.00 0.00 37.72 2.69
3721 3863 6.347270 TGTAAGTCGTTTCGAACAATTCAA 57.653 33.333 0.00 0.00 37.72 2.69
3722 3864 5.970140 TGTAAGTCGTTTCGAACAATTCA 57.030 34.783 0.00 0.00 37.72 2.57
3723 3865 7.427318 ACTTTTGTAAGTCGTTTCGAACAATTC 59.573 33.333 0.00 0.00 40.60 2.17
3724 3866 7.217447 CACTTTTGTAAGTCGTTTCGAACAATT 59.783 33.333 0.00 0.00 42.67 2.32
3725 3867 6.685403 CACTTTTGTAAGTCGTTTCGAACAAT 59.315 34.615 0.00 0.00 42.67 2.71
3726 3868 6.016718 CACTTTTGTAAGTCGTTTCGAACAA 58.983 36.000 0.00 0.00 42.67 2.83
3727 3869 5.348179 TCACTTTTGTAAGTCGTTTCGAACA 59.652 36.000 0.00 0.00 42.67 3.18
3728 3870 5.788467 TCACTTTTGTAAGTCGTTTCGAAC 58.212 37.500 0.00 0.00 42.67 3.95
3729 3871 6.242829 GTTCACTTTTGTAAGTCGTTTCGAA 58.757 36.000 0.00 0.00 42.67 3.71
3730 3872 5.499017 CGTTCACTTTTGTAAGTCGTTTCGA 60.499 40.000 0.00 0.00 42.67 3.71
3731 3873 4.658723 CGTTCACTTTTGTAAGTCGTTTCG 59.341 41.667 0.00 0.00 42.67 3.46
3732 3874 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
3733 3875 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
3734 3876 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
3735 3877 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
3736 3878 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
3737 3879 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
3738 3880 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
3739 3881 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3740 3882 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
3741 3883 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
3742 3884 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3743 3885 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
3744 3886 5.750352 TTATACTCCCTCCGTTCACTTTT 57.250 39.130 0.00 0.00 0.00 2.27
3745 3887 5.247792 ACTTTATACTCCCTCCGTTCACTTT 59.752 40.000 0.00 0.00 0.00 2.66
3746 3888 4.776308 ACTTTATACTCCCTCCGTTCACTT 59.224 41.667 0.00 0.00 0.00 3.16
3747 3889 4.351127 ACTTTATACTCCCTCCGTTCACT 58.649 43.478 0.00 0.00 0.00 3.41
3748 3890 4.732672 ACTTTATACTCCCTCCGTTCAC 57.267 45.455 0.00 0.00 0.00 3.18
3749 3891 4.081309 CCAACTTTATACTCCCTCCGTTCA 60.081 45.833 0.00 0.00 0.00 3.18
3750 3892 4.439968 CCAACTTTATACTCCCTCCGTTC 58.560 47.826 0.00 0.00 0.00 3.95
3751 3893 3.199289 CCCAACTTTATACTCCCTCCGTT 59.801 47.826 0.00 0.00 0.00 4.44
3752 3894 2.770232 CCCAACTTTATACTCCCTCCGT 59.230 50.000 0.00 0.00 0.00 4.69
3753 3895 2.770232 ACCCAACTTTATACTCCCTCCG 59.230 50.000 0.00 0.00 0.00 4.63
3754 3896 3.778629 TGACCCAACTTTATACTCCCTCC 59.221 47.826 0.00 0.00 0.00 4.30
3755 3897 5.367060 AGATGACCCAACTTTATACTCCCTC 59.633 44.000 0.00 0.00 0.00 4.30
3756 3898 5.289510 AGATGACCCAACTTTATACTCCCT 58.710 41.667 0.00 0.00 0.00 4.20
3757 3899 5.632034 AGATGACCCAACTTTATACTCCC 57.368 43.478 0.00 0.00 0.00 4.30
3758 3900 9.628500 AAAATAGATGACCCAACTTTATACTCC 57.372 33.333 0.00 0.00 0.00 3.85
3765 3907 8.971073 CCATTCTAAAATAGATGACCCAACTTT 58.029 33.333 0.00 0.00 34.22 2.66
3766 3908 8.336235 TCCATTCTAAAATAGATGACCCAACTT 58.664 33.333 0.00 0.00 34.22 2.66
3767 3909 7.872138 TCCATTCTAAAATAGATGACCCAACT 58.128 34.615 0.00 0.00 34.22 3.16
3768 3910 8.571336 CATCCATTCTAAAATAGATGACCCAAC 58.429 37.037 1.79 0.00 41.04 3.77
3769 3911 7.725397 CCATCCATTCTAAAATAGATGACCCAA 59.275 37.037 7.75 0.00 41.04 4.12
3770 3912 7.073598 TCCATCCATTCTAAAATAGATGACCCA 59.926 37.037 7.75 0.00 41.04 4.51
3771 3913 7.461749 TCCATCCATTCTAAAATAGATGACCC 58.538 38.462 7.75 0.00 41.04 4.46
3772 3914 8.160106 ACTCCATCCATTCTAAAATAGATGACC 58.840 37.037 7.75 0.00 41.04 4.02
3783 3925 9.527157 TGTTTGATTTTACTCCATCCATTCTAA 57.473 29.630 0.00 0.00 0.00 2.10
3784 3926 8.956426 GTGTTTGATTTTACTCCATCCATTCTA 58.044 33.333 0.00 0.00 0.00 2.10
3785 3927 7.093771 GGTGTTTGATTTTACTCCATCCATTCT 60.094 37.037 0.00 0.00 0.00 2.40
3786 3928 7.035612 GGTGTTTGATTTTACTCCATCCATTC 58.964 38.462 0.00 0.00 0.00 2.67
3787 3929 6.350110 CGGTGTTTGATTTTACTCCATCCATT 60.350 38.462 0.00 0.00 0.00 3.16
3788 3930 5.125417 CGGTGTTTGATTTTACTCCATCCAT 59.875 40.000 0.00 0.00 0.00 3.41
3789 3931 4.457603 CGGTGTTTGATTTTACTCCATCCA 59.542 41.667 0.00 0.00 0.00 3.41
3790 3932 4.457949 ACGGTGTTTGATTTTACTCCATCC 59.542 41.667 0.00 0.00 0.00 3.51
3791 3933 5.391629 GGACGGTGTTTGATTTTACTCCATC 60.392 44.000 0.00 0.00 0.00 3.51
3792 3934 4.457949 GGACGGTGTTTGATTTTACTCCAT 59.542 41.667 0.00 0.00 0.00 3.41
3793 3935 3.816523 GGACGGTGTTTGATTTTACTCCA 59.183 43.478 0.00 0.00 0.00 3.86
3794 3936 3.120442 CGGACGGTGTTTGATTTTACTCC 60.120 47.826 0.00 0.00 0.00 3.85
3795 3937 3.120442 CCGGACGGTGTTTGATTTTACTC 60.120 47.826 0.00 0.00 0.00 2.59
3796 3938 2.809696 CCGGACGGTGTTTGATTTTACT 59.190 45.455 0.00 0.00 0.00 2.24
3797 3939 2.666344 GCCGGACGGTGTTTGATTTTAC 60.666 50.000 5.05 0.00 37.65 2.01
3798 3940 1.536331 GCCGGACGGTGTTTGATTTTA 59.464 47.619 5.05 0.00 37.65 1.52
3799 3941 0.312729 GCCGGACGGTGTTTGATTTT 59.687 50.000 5.05 0.00 37.65 1.82
3800 3942 0.820074 TGCCGGACGGTGTTTGATTT 60.820 50.000 5.05 0.00 37.65 2.17
3801 3943 0.820074 TTGCCGGACGGTGTTTGATT 60.820 50.000 5.05 0.00 37.65 2.57
3802 3944 0.820074 TTTGCCGGACGGTGTTTGAT 60.820 50.000 5.05 0.00 37.65 2.57
3803 3945 1.440938 CTTTGCCGGACGGTGTTTGA 61.441 55.000 5.05 0.00 37.65 2.69
3804 3946 1.008995 CTTTGCCGGACGGTGTTTG 60.009 57.895 5.05 0.00 37.65 2.93
3809 3951 0.899720 TATTCTCTTTGCCGGACGGT 59.100 50.000 5.05 0.00 37.65 4.83
3811 3953 2.724690 CGTATATTCTCTTTGCCGGACG 59.275 50.000 5.05 0.00 0.00 4.79
3873 4016 2.035626 CCCGCTTTGGATGGTGGT 59.964 61.111 0.00 0.00 42.00 4.16
3877 4020 1.815421 CTCGTCCCGCTTTGGATGG 60.815 63.158 6.27 0.00 41.06 3.51
3878 4021 2.464459 GCTCGTCCCGCTTTGGATG 61.464 63.158 0.00 0.00 42.00 3.51
3879 4022 2.125106 GCTCGTCCCGCTTTGGAT 60.125 61.111 0.00 0.00 42.00 3.41
3880 4023 3.589654 CTGCTCGTCCCGCTTTGGA 62.590 63.158 0.00 0.00 42.00 3.53
3881 4024 2.859273 ATCTGCTCGTCCCGCTTTGG 62.859 60.000 0.00 0.00 37.55 3.28
3882 4025 1.424493 GATCTGCTCGTCCCGCTTTG 61.424 60.000 0.00 0.00 0.00 2.77
3883 4026 1.153549 GATCTGCTCGTCCCGCTTT 60.154 57.895 0.00 0.00 0.00 3.51
3884 4027 2.290122 CTGATCTGCTCGTCCCGCTT 62.290 60.000 0.00 0.00 0.00 4.68
3885 4028 2.755876 TGATCTGCTCGTCCCGCT 60.756 61.111 0.00 0.00 0.00 5.52
3886 4029 2.279120 CTGATCTGCTCGTCCCGC 60.279 66.667 0.00 0.00 0.00 6.13
3887 4030 1.064946 GACTGATCTGCTCGTCCCG 59.935 63.158 0.00 0.00 0.00 5.14
3888 4031 0.532573 TTGACTGATCTGCTCGTCCC 59.467 55.000 0.00 0.00 30.96 4.46
3889 4032 2.370281 TTTGACTGATCTGCTCGTCC 57.630 50.000 0.00 0.00 30.96 4.79
3890 4033 3.515630 TCATTTGACTGATCTGCTCGTC 58.484 45.455 0.00 0.00 0.00 4.20
3891 4034 3.599730 TCATTTGACTGATCTGCTCGT 57.400 42.857 0.00 0.00 0.00 4.18
3892 4035 6.478016 TCTTAATCATTTGACTGATCTGCTCG 59.522 38.462 0.00 0.00 34.79 5.03
3893 4036 7.783090 TCTTAATCATTTGACTGATCTGCTC 57.217 36.000 0.00 0.00 34.79 4.26
3894 4037 8.571461 TTTCTTAATCATTTGACTGATCTGCT 57.429 30.769 0.00 0.00 34.79 4.24
3895 4038 9.798994 ATTTTCTTAATCATTTGACTGATCTGC 57.201 29.630 0.00 0.00 34.79 4.26
3909 4052 8.665685 GCTCGTCTTCCTTTATTTTCTTAATCA 58.334 33.333 0.00 0.00 0.00 2.57
3910 4053 8.884726 AGCTCGTCTTCCTTTATTTTCTTAATC 58.115 33.333 0.00 0.00 0.00 1.75
3911 4054 8.794335 AGCTCGTCTTCCTTTATTTTCTTAAT 57.206 30.769 0.00 0.00 0.00 1.40
3912 4055 8.504005 CAAGCTCGTCTTCCTTTATTTTCTTAA 58.496 33.333 0.00 0.00 31.27 1.85
3913 4056 7.876068 TCAAGCTCGTCTTCCTTTATTTTCTTA 59.124 33.333 0.00 0.00 31.27 2.10
3914 4057 6.710744 TCAAGCTCGTCTTCCTTTATTTTCTT 59.289 34.615 0.00 0.00 31.27 2.52
3915 4058 6.231211 TCAAGCTCGTCTTCCTTTATTTTCT 58.769 36.000 0.00 0.00 31.27 2.52
3916 4059 6.481954 TCAAGCTCGTCTTCCTTTATTTTC 57.518 37.500 0.00 0.00 31.27 2.29
3917 4060 7.454260 AATCAAGCTCGTCTTCCTTTATTTT 57.546 32.000 0.00 0.00 31.27 1.82
3918 4061 7.174946 TCAAATCAAGCTCGTCTTCCTTTATTT 59.825 33.333 0.00 0.00 31.27 1.40
3919 4062 6.655003 TCAAATCAAGCTCGTCTTCCTTTATT 59.345 34.615 0.00 0.00 31.27 1.40
3920 4063 6.173339 TCAAATCAAGCTCGTCTTCCTTTAT 58.827 36.000 0.00 0.00 31.27 1.40
3921 4064 5.547465 TCAAATCAAGCTCGTCTTCCTTTA 58.453 37.500 0.00 0.00 31.27 1.85
3922 4065 4.389374 TCAAATCAAGCTCGTCTTCCTTT 58.611 39.130 0.00 0.00 31.27 3.11
3923 4066 3.999663 CTCAAATCAAGCTCGTCTTCCTT 59.000 43.478 0.00 0.00 31.27 3.36
3924 4067 3.594134 CTCAAATCAAGCTCGTCTTCCT 58.406 45.455 0.00 0.00 31.27 3.36
3925 4068 2.675348 CCTCAAATCAAGCTCGTCTTCC 59.325 50.000 0.00 0.00 31.27 3.46
3926 4069 3.589988 TCCTCAAATCAAGCTCGTCTTC 58.410 45.455 0.00 0.00 31.27 2.87
3927 4070 3.685139 TCCTCAAATCAAGCTCGTCTT 57.315 42.857 0.00 0.00 34.78 3.01
3928 4071 3.685139 TTCCTCAAATCAAGCTCGTCT 57.315 42.857 0.00 0.00 0.00 4.18
3929 4072 4.393062 TCATTTCCTCAAATCAAGCTCGTC 59.607 41.667 0.00 0.00 28.97 4.20
3930 4073 4.326826 TCATTTCCTCAAATCAAGCTCGT 58.673 39.130 0.00 0.00 28.97 4.18
3931 4074 4.952262 TCATTTCCTCAAATCAAGCTCG 57.048 40.909 0.00 0.00 28.97 5.03
3932 4075 6.685657 ACTTTCATTTCCTCAAATCAAGCTC 58.314 36.000 0.00 0.00 28.97 4.09
3933 4076 6.661304 ACTTTCATTTCCTCAAATCAAGCT 57.339 33.333 0.00 0.00 28.97 3.74
3934 4077 7.820648 TCTACTTTCATTTCCTCAAATCAAGC 58.179 34.615 0.00 0.00 28.97 4.01
3935 4078 9.224267 TCTCTACTTTCATTTCCTCAAATCAAG 57.776 33.333 0.00 0.00 28.97 3.02
3936 4079 9.224267 CTCTCTACTTTCATTTCCTCAAATCAA 57.776 33.333 0.00 0.00 28.97 2.57
3937 4080 8.378565 ACTCTCTACTTTCATTTCCTCAAATCA 58.621 33.333 0.00 0.00 28.97 2.57
3938 4081 8.785329 ACTCTCTACTTTCATTTCCTCAAATC 57.215 34.615 0.00 0.00 28.97 2.17
3939 4082 9.007901 CAACTCTCTACTTTCATTTCCTCAAAT 57.992 33.333 0.00 0.00 31.91 2.32
3940 4083 7.445402 CCAACTCTCTACTTTCATTTCCTCAAA 59.555 37.037 0.00 0.00 0.00 2.69
3941 4084 6.936900 CCAACTCTCTACTTTCATTTCCTCAA 59.063 38.462 0.00 0.00 0.00 3.02
3942 4085 6.270000 TCCAACTCTCTACTTTCATTTCCTCA 59.730 38.462 0.00 0.00 0.00 3.86
3943 4086 6.702329 TCCAACTCTCTACTTTCATTTCCTC 58.298 40.000 0.00 0.00 0.00 3.71
3944 4087 6.498651 TCTCCAACTCTCTACTTTCATTTCCT 59.501 38.462 0.00 0.00 0.00 3.36
3945 4088 6.592220 GTCTCCAACTCTCTACTTTCATTTCC 59.408 42.308 0.00 0.00 0.00 3.13
3946 4089 6.309251 CGTCTCCAACTCTCTACTTTCATTTC 59.691 42.308 0.00 0.00 0.00 2.17
3947 4090 6.159988 CGTCTCCAACTCTCTACTTTCATTT 58.840 40.000 0.00 0.00 0.00 2.32
3948 4091 5.336849 CCGTCTCCAACTCTCTACTTTCATT 60.337 44.000 0.00 0.00 0.00 2.57
3949 4092 4.158764 CCGTCTCCAACTCTCTACTTTCAT 59.841 45.833 0.00 0.00 0.00 2.57
3950 4093 3.506455 CCGTCTCCAACTCTCTACTTTCA 59.494 47.826 0.00 0.00 0.00 2.69
3951 4094 3.119424 CCCGTCTCCAACTCTCTACTTTC 60.119 52.174 0.00 0.00 0.00 2.62
3952 4095 2.826725 CCCGTCTCCAACTCTCTACTTT 59.173 50.000 0.00 0.00 0.00 2.66
3953 4096 2.041350 TCCCGTCTCCAACTCTCTACTT 59.959 50.000 0.00 0.00 0.00 2.24
3954 4097 1.634459 TCCCGTCTCCAACTCTCTACT 59.366 52.381 0.00 0.00 0.00 2.57
3955 4098 2.018515 CTCCCGTCTCCAACTCTCTAC 58.981 57.143 0.00 0.00 0.00 2.59
3956 4099 1.682394 GCTCCCGTCTCCAACTCTCTA 60.682 57.143 0.00 0.00 0.00 2.43
3957 4100 0.968393 GCTCCCGTCTCCAACTCTCT 60.968 60.000 0.00 0.00 0.00 3.10
3958 4101 1.513622 GCTCCCGTCTCCAACTCTC 59.486 63.158 0.00 0.00 0.00 3.20
3959 4102 3.701454 GCTCCCGTCTCCAACTCT 58.299 61.111 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.