>input_sequence_40051
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--------------ATGGAGACAGCGCAGGAAAGAGAGCTGCTGCAGCGGCTGCCGCTGCAGCTGCAGGGGTGGCCTTTC
CACGCCATGCCGCCCAGCTTCGACGCCGGCAGCG---------GCGGCA---------GCGGCAGCAGCAGCATGAGCAG
CGAC---------------TCCTTCCTGCTCGGCTGGGAGCCGCCGTTCGGCGGCTGCTTCGGCCTCGCCGACGCGCAGC
TCCACGACCTCTTCCCGCTCTGTACGTCGTGCGCGCGCCTGCCCGGCATCATGCCCGCGCTCTGTTTCCCTCTCCCGCAG
CTCCGGCGGAGAATTGAACTCGCCGTTTCTTCGACTGCAGGCATGATGGAGCCGCTCCCGCTGTCGCCGGCCGCGACGTC
CACGGCGGCGGGCCTCCCGTCGGAGCAGCAGGGCCCGGCGCCGGCGGCAATGCCCAACGGGGAGCTCGGCGACCTCCTGC
TGGTACATACACAATGCCC----------------ATCCTTATCTCTCGCGTCCGAATTAACTACCGCGGCAGTTTCTTG
CGAGATTTCCTCGGCCGTGTGAAAACCGTCGCTTTCTCTCATTGTTCCCTCTCGGCAGAATTTCTGGGACGCCGGTGATG
TCAGCGAGCGGCCGGTCGCAATCAATTCAGGCTGCGTGGCACCGCAGCAGCACGAGAAGAGCAGCCAGAGCAGCGCTGCC
ACCGCCACGAACTCTTTCCTCTGTAAGCAAAGCACCTCCCTCCCTCCATCCCTCCCTCCCTCAGATTCCATTGATCGGCT
TCAGCTCTCGCTAGGCCTGTGCGCTTTCTCTACTATAGGTCTCTGCCCCGGTCCTTGGCACATCACCAAGGAGGCAAGGA
CAAAACACAAAGTCGTAGAGCTCGCATTTAACAAT-GGAGCTTGTCAATGCCATGCGTTCAAAAAACGCCATGTGGGCCC
-GGGTGGGTGGGGTGGGGCCCGGCCGAGATTAGCAGCGCCTAATTGTCATGACCTTGATGACCCTATGATTTGCGCATGG
TAATATATAGAAGTATATTATAGTACTATCCT-----------GGTA-----GGATTGCACC---ATAATAGTGTTGCAA
TGTGCATGTTATAATATAATAGTGTGGACTTGTTAGTGTGAGCACGTAGAGACAGGCGCTTCTTTTCAAGTAAAGACAGA
TGTGGGTGTTACATGCTTAGACGGTAGCAAAGATTCTAATCTTGTGCGGGACTGCTCCTGCCAAAGTCGCACCTTTTACG
TGATCACTTCATTATTTTCAAGGCGCATTGGGTGTGTGAATTGGATGATTATTAACCGGTTGATGATCGCCGCCGCAGAT
GATGAGGACGATCTTTTGGGCTCCATTTTCTCCAAGAGGCCCACCATGGCAGAAGAACCGCCCGTGCTCCTCCTCGCCCC
GGCGGAGGCGGAGCCCCTCCTCAGCACCTCCTCCTCCTCCAGCTGCCACGCGGGCCCACCCGCCAGCGGCGCCGGCGGGG
CCCGGCCGCAGGACGCTACCGCCACCGCCGAGCCATGTGGCGCGCGGGCCCCGCCGCTCCCCCGCTGCTCCTCCTCGTCG
CTCAAACGCGCGACACCGGAAGGTGCTCTCCCGACCTCGACGCGACACGCCTCACAGTCGCCTCCACCCACTCCCAAGAA
CCGTCTAATCACATAATCTAAGGCGTAATTAACTTTGACTGGCGTCGGTGTCTGGCAGCAGCGGCGGAGTCGGCGTCGGC
GGAGGCGGAGTGCAGCCAGAGCGGCGGCAAGCGGCGGAGGGCGGCGTCGGGAAGCGTGCTGTGCCCGTTCGCGGTGCTGA
AGCCCGACGGGCTGGACGGCGGCGCGACGCTGGCGGACATCAACGCGCGCATCCTCATGCGGCCGGCGCGGCCCGTGCGG
CACCCCGTCGGCGAGTACGCGTGCGCGCCGCGCGTGCTGGCGGCCGACGCGCCGGGCATCTCCGGCAGGGCCGTCTCGGG
GTTCACGCGGCTGCACACCCCCGGCCGCGGCACCATCACCATCATGAGGACGCGAGGCTGA-------------------
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---------------------------------------
>chr5A_1_TraesCS5A01G233400
GCAGACAACACCGTTCATTCCTGCATCGTGTGGGGTTCGGCCAGCTAGTGTCGTCCGTCCAGCAGTTTCGATCACCGAAC
CAGCAGCCACCCGCGCGGCTTTGACCTCGC-TGTAACAGACGCGCGCAGACCTGCAGTCTGCTT--ACTACTCATCACAA
TAACAAACTCAAACA--CATTGCACACTTTGAGGCAACAACAACAAAAAATACACAAGTAAAATAGCGGCGACACGTGAT
GAGGGAAGGCGTCAGAGACTTAAAGCCGACGGCCAAACAAAGC-----------ACAAAGCCGTCCGTCGTAGTACTAA-
---------TTCAGAGCCCTCGCCGACATACTGCATTTCGAATTGCCGCAGCCTGCGGAGGCGATTCCCGGGAACAAACC
GATCGTTTCGGCAGGCAAAACAAAAGCAGGTGAGGATCGAAAGAAAAGCGAAAGAGAAGATTACAACGGGAGCAGTAAAG
AAAGCTGATCGAGGAGGAAGGGAGGCGTAGCGTA-CGTACATCGGCCAGCCAAAGGCCAAAGCGGCGGCACGTAGAGGAA
GGCCAGCGGCGAGCGAATCACGAGGAAAGCACGCCGGGAGATGGAGGTGGAGCGAGGGCAGCAGCCAACCACCCCTATCT
TTTGCTTTCGTTGCTTCGCTTGGACTTTGGTAGTACTACGTAGGTACGCACTCTCTGCTAACTGACTTTGGCCGCGACTG
TCACTGGACTGACTGACCCAGC---------------GGAAAGAAAATAACCAAGTGACGCAGCGGCCAACTGGTGTGTG
TACACAGGTGGTGCGTTACGGGGCGGCGGTGGACTCGGCATGCATGTCGCGGCTGCACGCTCT-GGGCTCTGGCGTTGGG
GGAAAAAGAAAAGCCGTCCTATTTAAGCACGCCCGGCCGCCGCACTCTGACGG-CC-CGCTCACACACACACACACACAC
ACACACTCTCGCTCCTCTCGCTCTTGTCTTGCCACACAGGCGGGCGAGTGACGCGGCTCATCATACCGAGGGAGGCCGTT
GC---------ACCATGGAGACAGCGCAGGAAAGAGAGCTGCTGCAGCGGCTGCCGCTGCAGCTGCAGGGGTGGCCTTTC
CACGCCATGCCGCCCAGCTTCGACGCCGGCAGCG---------GCGGCA---------GCGGCAGCAGCAGCATGAGCAG
CGAC---------------TCCTTCCTGCTCGGCTGGGAGCCGCCGTTCGGCGGCTGCTTCGGCCTCGCCGACGCGCAGC
TCCACGACCTCTTCCCGCTCTGTACGTCGTGCGCGCGCCTGCCCGGCATCATGCCCGCGCTCTGTTTCCCTCTCCCGCAG
CTCCGGCGGAGAATTGAACTCGCCGTTTCTTCGACTGCAGGCATGATGGAGCCGCTCCCGCTGTCGCCGGCCGCGACGTC
CACGGCGGCGGGCCTCCCGTCGGAGCAGCAGGGCCCGGCGCCGGCGGCAATGCCCAACGGGGAGCTCGGCGACCTCCTGC
TGGTACATACACAATGCCC----------------ATCCTTATCTCTCGCGTCCGAATTAACTACCGCGGCAGTTTCTTG
CGAGATTTCCTCGGCCGTGTGAAAACCGTCGCTTTCTCTCATTGTTCCCTCTCGGCAGAATTTCTGGGACGCCGGTGATG
TCAGCGAGCGGCCGGTCGCAATCAATTCAGGCTGCGTGGCACCGCAGCAGCACGAGAAGAGCAGCCAGAGCAGCGCTGCC
ACCGCCACGAACTCTTTCCTCTGTAAGCAAAGCACCTCCCTCCCTCCATCCCTCCCTCCCTCAGATTCCATTGATCGGCT
TCAGCTCTCGCTAGGCCTGTGCGCTTTCTCTACTATAGGTCTCTGCCCCGGTCCTTGGCACATCACCAAGGAGGCAAGGA
CAAAACACAAAGTCGTAGAGCTCGCATTTAACAAT-GGAGCTTGTCAATGCCATGCGTTCAAAAAACGCCATGTGGGCCC
-GGGTGGGTGGGGTGGGGCCCGGCCGAGATTAGCAGCGCCTAATTGTCATGACCTTGATGACCCTATGATTTGCGCATGG
TAATATATAGAAGTATATTATAGTACTATCCT-----------GGTA-----GGATTGCACC---ATAATAGTGTTGCAA
TGTGCATGTTATAATATAATAGTGTGGACTTGTTAGTGTGAGCACGTAGAGACAGGCGCTTCTTTTCAAGTAAAGACAGA
TGTGGGTGTTACATGCTTAGACGGTAGCAAAGATTCTAATCTTGTGCGGGACTGCTCCTGCCAAAGTCGCACCTTTTACG
TGATCACTTCATTATTTTCAAGGCGCATTGGGTGTGTGAATTGGATGATTATTAACCGGTTGATGATCGCCGCCGCAGAT
GATGAGGACGATCTTTTGGGCTCCATTTTCTCCAAGAGGCCCACCATGGCAGAAGAACCGCCCGTGCTCCTCCTCGCCCC
GGCGGAGGCGGAGCCCCTCCTCAGCACCTCCTCCTCCTCCAGCTGCCACGCGGGCCCACCCGCCAGCGGCGCCGGCGGGG
CCCGGCCGCAGGACGCTACCGCCACCGCCGAGCCATGTGGCGCGCGGGCCCCGCCGCTCCCCCGCTGCTCCTCCTCGTCG
CTCAAACGCGCGACACCGGAAGGTGCTCTCCCGACCTCGACGCGACACGCCTCACAGTCGCCTCCACCCACTCCCAAGAA
CCGTCTAATCACATAATCTAAGGCGTAATTAACTTTGACTGGCGTCGGTGTCTGGCAGCAGCGGCGGAGTCGGCGTCGGC
GGAGGCGGAGTGCAGCCAGAGCGGCGGCAAGCGGCGGAGGGCGGCGTCGGGAAGCGTGCTGTGCCCGTTCGCGGTGCTGA
AGCCCGACGGGCTGGACGGCGGCGCGACGCTGGCGGACATCAACGCGCGCATCCTCATGCGGCCGGCGCGGCCCGTGCGG
CACCCCGTCGGCGAGTACGCGTGCGCGCCGCGCGTGCTGGCGGCCGACGCGCCGGGCATCTCCGGCAGGGCCGTCTCGGG
GTTCACGCGGCTGCACACCCCCGGCCGCGGCACCATCACCATCATGAGGACGCGAGGCTGATGCGTCCATCATTGCAGCA
CGCCATGTCTGCCTGCCGCGCCCATGGACGACGACGATGCATGATGATGGTGTGCTCCGTGTAGATTAGCCCGGCTCAAT
CAGTGCGTGCATGGCTAGCTAGATAGACGCTCGATCGCTAGCCAGCACGTAGTAGCAGT-------ATCCCGAGTTCCGA
TGCAGTGTAATTATATGCTCGATCA---CATCAGGAGTGAGTGGGTCAGTGAATGAATAAA-ATCCTTCCATTTCTCTTC
TCCGGATCTCGTGTTTGATCTTTCTTCTTCTCGGATGCTCTGATAGCGATAGCGAAGGCTTCCTTGGATCGTCCGTCCGT
CCGTCGCCGTAGCAAGGAACAAGAGAGCCGGCCGGTGGCCCCTTGTCCTTGTGCTCCTGGTAGCCAAGCAGGCTGTGCGT
GTTTACGGCCGCATACCTACAGCCCCGAAAAGCTGAAAGCAACTGCCTTTCCTTTTGTCTGCAAGGCGTGGGCCCGCC--
-CCTTAATTCGAGCTGCCTCCATGTCAAGCTCTTTGCATGAGATCTTTTTTTTTTCTTTTTGTAAAAGAATTGACTTGAC
TTGAGCATACCACATTGTTAATCAC---TCACCGCAAAGCCTCCCTCTGGAATGGCTTCTTTCCGTTTGTTTAAAATATA
CTTCCTCCGTTCCAAAATAGATGACTCAACTTTATACTAACTTTAGTATTTCTTCTGTTCATTTCTATAAGACCTTTCAG
ACAATGTGCAAAACAACCTATTTTGAATTGTTCGAAACGACTTACAAAAGTGAACGGAGGGAGTATAAAGTTGGGTCATC
TATTTTAGAATGGATGGAGTAAAATCAAACACCGTCCGGCAAAGAGAATATACGAA-GGATAAAGACGGTGGTAGAGCAG
GGCATGGTAAAAACCACCACCATCCAAAGCGGGACGAGCAGATCAGTCAAATGATTAAGAAAATAAAGGAAGACGAGCTT
GATTTGAGGAAATGAAAGTAGAGAGTTGGAGACGGGAGC
>chr5D_70
---------------------------------------------------------------------GATCACCGAAC
TAGCAGCTACCCGCGCAGCTTTGACCTC-CATGTAACAGACGCACGCAGACCTGCCATCTGCTT--ACCAT---TCACAA
TAACAAACTCAAGACATTTTTGCACACTTTGAGGCAACAA-----AAAATAACACAAGTAAAATAGCAGCGACACGTGAT
AAGGGAAGACGTCAAAGGCTTAAAGCCGACGGCCAAACAAAGCGAGCAGCGAGCACAAAGCCGTCCGTCGTCCGTCGTAG
CAGCACTGGTTCAGAGCCCTCGCCGACATACTGTATTTCGAATTGCCGCAGCCTGCGGAGGCGATTCCCGGGAACAAACC
GATCGTATCGGCAGGCAAAACAAAAGCAGGTGAGGGATCGAAAGAAAGCGAAAGAGAAGATTACAACGGGAGCAGTAAAG
AAAGCGGATCGAGGAAGAAGGGAAGTGTAGCGTAGCGTACATCGGCCAGCCAAAGGCCAAAGCGGCGGCACGTAGAGGAA
GGCA----GCGAGCGAATCACGAGGAAAGCAAGCCGGGAGATAGAGATTGAGAGAGAGCAGC--CCAACCACCCCTATCT
TTTGCTTTCGTTGCTTCGTTTGGACTTTGGTACTACGTA-------------CTCTGCTAACTGACTTTGGCCGCGACTG
TCACTGGACTGAC---------CGAGGTCGCCCCAAGGGAAAGAAATAAAACAAGTGACGCAGCGGCCAACTGGTGTACC
TCTAGAGGTGGTGCGCTACGGGGCAGCGGTGGACTCGGCATGCATGTCGCGGCTGCACGCTCT-GG-CTCTGGCGTTGGA
GGAAAAA----AGCCGTCCTATTTAAGCACGCCCGGCCGCCGCACTCTGACCGCCCGCTCACACACACACTCGCTCTCTC
TCTC--------------GCTCTCGGTGCCACACAA-------GCGAGTGACAAGGCTCATCATACCGAGGGAGCCCGTT
GCCGCGGCTGCGCCATGGAGACAGCGCAGGAAAGAGAGCTGCCGCA---GCTGCCGCTGCAGCTGCAGGGGTGGCCTTTC
CACGCCATGCCGCCCAGCTTCGACGCCGGCAGCG---------GCGCCTACAGCAGCGGCGGCAGCAGCAGCATGAGCAG
CGAT---------------TCCTTCCTGCTCGGGTGGGAGCCGCCGTTCGGCGGCTGCTTCGGCCTCGCCGACGCGCAGC
TCCACGACCTCTTCCCCCTCTGTACGTCGTGCGCGC-----CCCGGCATCATGCCCGCGCTCTGTTTTCCTCTTCGGCAG
CGCCGGCGGAGAATTGAACTCGCCGTTTCTTCGACTGCAGGCATGATGGAGCCGCTCCCGCTGTCGCCGGCCGCGACGTC
CACGGCGGCGGACCTCCCATCGGAGCAGCAGGTCCCGGCGCCGGCGGCAATGTCCAACGGGGAGCTCGGCGACCTCCTGC
TGGTACGTACACAATGCCC----------------ATCCTTATCTTTCGCGTCCGAATTAACTA---GGGCAGTTTCTTG
CGAGATTTCCTCGGCCGTGTTAAAACCGTCGCTTTCTCTCATTGTTCCCTCTCGGCAGAATTTCTGGGACGCCGGTGATG
CCAGCGACCGGCCGGTCGCAATCAATTCAGGCTGCGTGGCACCGCAGC---ACGAGAAGAGCAGCCAGAGCAGCGCTGCC
ACGGCCACGAACTCTTTCCTCTGTAAGCAAAGCCTCTCCCTCCA--------TCCCTCCCTCAGACTCCATTGATCGACT
TGAGCTCTCGCTAGGCCTGTGCGTTTTCTCTACTATAGGTCTCTGCCCCGGTCCTTGGCACATCACCAAGGAGGCAAGGA
CAAAGCACAAAGTCGTAGAGTTCGCATTTAACAATGGGAGCTTGTCAATGCCATGCGTTCAAAAA-CGCCATGTGGGGCC
GGGGTGGGTGGGGTGGGACCCGCCGAGGATTAGCAGCGCTTAATTGTCATGACCTTGATGACCCTATGATTTGCGCATGG
TCGCTCAGTAATATATACATACTCCAGTACTACATCGCGGTACGGTACGGTAGGATTGCACCATAATAATAGTATTGCAA
TGTGCATGT-----TATAATAGTGTAGACTTGTTAGTG--AGCACGTAGAGACAGGCGCTTCTTTTCAAGTAAAGACAGA
TCTGGGTGTTACATGCTTAGATGGTAGCAAAGATTCTAATCTTGTGCGGGACTGCTCCTGCCAAAGTCGCACCTTTTACG
TGATCACTTCATTATTTTCAAGGCGCATTGGGCATGTGAATTGGATGATTATTAACTGGTTGATGATCGCTGCCGCAGAT
GATGAGGACGATCTTTTGGGCTCCATTTTCTCCAAGAGGCCCACCTTGGGAGAAGAACCACCCGTGCTCCTCCTCGCCCC
GGCGGAGGCGGAGCCCCTCCTCAGCGCCTCCTCCTCCTCCAGCTGCCACGCGGACCCACCTGCCAGCGACGCCGGCGGGG
CCCGGGCGCAGGGCA------CCACCACCGAGCCAAGTGGCGCGCGGGCCCCGCCCCTCCCTCGCTCCTCCTCCTCGTCG
TTGAAACGCGCGACACCGGAAGGTGCTCTCTCGACTTCGACGCGACACGCTTCACAGTCGCCTCCACCCACTCCCAAGAA
CTGTCTAATCACATAATCTAAGGAGTAATTAACTTTGACCGGCGTT-GTGTCTGGCAGCAGCATCGGACTCG------GC
GGAGGCGGAGTGCAGCCAGAGCGGCGGCAAGCGGCGGAA---GGTGTCGGCGAGCGTGCTGTGCCCGTTCGCCGTGCTGA
AGCCCGACGGGCTGGACGGCGGCGCGACGCTGGCGGACATCAACGCGCGCATCCTCATGCGGCCGGCGCGGCCCGTGCGG
CACCCCGTCGGCGAGTACGCGTGCGCGCCGCGCGTGCTGGCGGCCGACGCGCCGGGCATCTCGGGCAGGGCCGTCTCGGG
GTTCACGAGGCTGCACACCCCCGGCCGCGGCACCATCACCATCATGAGGACGCGAGGCTAATGCATCCATCATTGCAAGC
C-------CTGTCCGCTGCGCCCATGGACGACGA-------TGATGATGGCGTACTCCGTGTAGATTAGCCCGGCTCAAT
CA----GTGCATGGCTAGCTAGATAGACGCTCGATCGCTAGCCAGTGCTACGTAGCAGTGCCT------CCGAGTCCCGA
TGCCGTGTAATTATATGCTCGATTA---CATAAG----GAGTGAGTGAGTGAATGAATAAAAATCCTTCCATTTCTCTTC
TCCCGATCTCGTTTTTGATCTT----CTTCTCGGATGCTCTGATAGCGATAGCGAAGGTTTCCTTGGAT--------CGT
CCGTCGCCGTAGCAAGGAACAAAGCCCGGCTGGTGG---CCCCTGTCCTTGTGCTCCTGGTAGCCAAGCAGGCTGTG---
-TTTACGGCCGCATACATACAGCCCCGAAAAGCTGAAAGCAACTGCCTTTCCTTTTGTCTGCAAGGCGTGGGCCTACTCC
ACCTTAATTCGAGCTGCCTCCATG----GCTCTTTGCATGAGATCTTTTTTT---CTTTTTGTAAAAGAATGGACTTGAC
TTGAGCATACCACATTGTTAATCAC---TCACCGCAAAGCCTTCCTCTGGAATGGCTTCTTTCTGTTTGTTTAAAATA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAACGCTGTCCGGCAAAGAGAATATACGAAGGGATAAAGACGGTGGTAGAGCAG
GGCATGGTAAAAACCGCCA-------------------------------------------------------------
---------------------------------------
>chr5B_70
---------------------------------------------------------------------GATCACCGAAC
TAGCAGCCACCTGCGTGGCTTTGACCTC-C-TGTAACAGACGCGCGCAGACCTGCAATCTGCTTTAACCAT---TCACAA
TAATAAACTCAAACA--TTTTGCACACTTTGAGGCAAAAATACTTACT----------TAAAATAACAGTGACACGTGAT
AAGCGAAGGCGTCAAAGACTTAAAGCCGACGGCTAAACAAAGC-----------ACAAAGCCGTCG----------TAA-
---------TTCAGAACCCTCGCCGACA-----TATTTCGAATTGCCGCAGCCTGTGGAGGCGATTCCCGGGAACAAAAC
GATCGTATCGGCAGGCAAAACAAAAGCAGGTGA-GGATCGAAAGAAAGCGAAAGAGAAGATTACAACGGGAGCAGTAAAG
AAAGCGGATCGAGGAAGAAGCTA----------A-CGTACATCGCCCAGCCAAAGGCCAAAGCGGCGGCACGTAGAGGAA
GGCA----GCGAGCGAATCACGAGGAAAGCAAACCGGGAGATAGAGAGAGAGCAGT-----CAGCCAACCACCCCTATCT
TTTGCTTTCGTTGCTTCGTTTGGACTTTGGTACTACGTACGTA---------CTCTGCTAACTGACTTTGGCCGCGACTG
TCACTGGACTGACCCCGGCGAGCGAGGTCGCCCCAAGGGAAGGAAATAAAACAAGTGACGCATTGGCCAACTGGTGTATG
TACACAGGGGGCGCGTTACGGGGCGGCGGTGGACTTGGCATGCATGTCGCGGCTGCACGCTCTGGG-CTCTGGCGTTGGA
GGAAAAA----AGCCGTCCTATTTAAGCACGCCCGGCCGCCGCACTCTGACCGCCC-CGCTCACACACACTCGCTCCCTC
TCTCTCTCTCGCTCGCTAGCTCTCGGTGCCAGACAA-------GCGAGTGACGCGGCTCATCATACCGAGGGAGGCCGTT
GCTGCTGCTGCACCATGGAGACAGCGCAGGAAAGAGAGCTGCTGCA---GCTGC------AGCTGCAGGGGTGGCCTTTC
CACGCCATGCCGCCCAGCTTCGACGCCGGCAACGGCGCCTACAGCGGCA---------GCGGCAGCAGCAGCATGAGCAG
CGACGTCGGCGGCGGCGACTCCTTCCTGCTCGGGTGGGAGCAGCCGTTCGGCGGCTGCTTCGGCCTCGCCGACGCGCAAC
TCCACGACCTCTTCCCCCTCTGTACGTCGTGCGCGCGCC-----GGCATCATGCCCGTGCTCTGTTTTCCTCTTCGGCAG
CTCCGGCAGAGAATTGAACTCGCCGTTTCTTCGACTGCAGGCACGATGGAGCCGCTCGCGTTGTCGCCGGCCGCGACGTC
CACGGCGGCGGACCTCCCGTCGGAGCAGCAGGTCCCGGCGCCGGCGGCAATGCCCAACGGGGAGCTCGGCGACCTCCTGC
TGGTACACACACGCTGCCCGGCGAAGCAACCTACTATCCTTATCTTTCGCGTCCGAATTAACTA---CGGCAGTTTCTTG
CGAGATTTCCTCGGTCGTGTTAAAATCGTCGCTTTCTCTCATTGTTTCCTCTCGGCAGAATTTCTGGGACGCCGGTGATG
CGAGAGAGCGGCCGGTCGCAATCAATTCGGGCTGCGTGCCACCGCAGC---ACGAGAAGAGCAGCCAGAGCAGCGCTGCC
ACCGCCACGAACTCTTTCCTCTGTAAGCAAAGTCCGTCCCTCCCTCT------------CTCAGACTCCATTGATCGGCT
TCAGCTCTCGGTAGGCCTGTGTTTTTTCCTC----TAGGTCTCTGCCCCGGTCCTTGGCACATCACCAAGGAGGCAAGGA
CAAAGCACAAAATCGTAGAGTTCGCATTTAACTATGGAAGCTTGTCAATGCCATGCGTTCAAAAA-CGCCATGTGGGGCC
GGGGTGGGTGG-GTGGGACCCGCCCAAGATTAGCAGCGCCTAATTGTCATGGCC-TGATGACCCTATGATTTGCGCATGG
TCGCTAAGTAATATA----TACTCCAGTACTATATCGCGGTACGGTA-----GGATTGCACC---ATAATAGTATTGCAA
TGTGCATGT-----TATAATAGTGTGGACTTGTTAGTG--AGCACGTAGAGACAGGCGCTTCTTTTCAAGTAAAGACAGA
TCTGGGTGTTGCATGTTTAGATGGTAGCAAAGATTCTAATCTTGTGCGGGACTGCTCCTGCCAAAGTCACACCTTTTACG
TGATCACTTCATTATTTTTAAGGCACACTGGGTATGTGAATTGAATGATTATTAATCGGTTGATGATCGCTGCCGCAGAT
GATGAGGACGATCTTTTGGGCTCCATTTTCTCCAAGAGGCCCACCCTGGCAGAAGAACCACCCGTGCTCTTCCTCGCCCC
GGCGGAGGCGGAGCCCCTCCCCAGCACCTCCTCCTCCTCCAGCTGCCACGCGGACCCACATGCCAGCGACGCCGGCGGGG
CCCGGGCTCAGGACA------CCACCACCAAGCCAAGTGGCGCGCGGGCCCCGCCTCTCCCTCGCTGCTCCTCCTCGTCG
TTGAAACGGGCGACACCAGAAGGTGCTCTCTCGACCTCGACGCGACACGCTTCACAGTCACCTCCACCCACTCTCAAGAA
CTGTCTAATCACATAATCTAAGGAGTAATTAACTTTGACTGGCGTC-GTGTCTGGCAGCAGCATCGGAGTCG------GC
GGAGGCGGAGTGCAGCCAGAGCGGCGGCAAGCGGCGGAA---GGTGTCGGCGAGCGTGCTGTGCCCGTTCGCCGTGCTGA
AGCCCGACGGGCTGGACGGCGGCGCGACGCTGGCGGACATCAACGCGCGCATCCTCATGCGGCCGGCGCGGCCCGTGCGG
CACCCCGTCGGCGAGTACGCGTGCGCGCCGCGCGTGCTGGCGGCCGACGCGCCGGGCATCTCCGGCAGGGCCGTCTCGGG
GTTCACGAGGCTGCACACCCCCGGCCGCGGCACCATTACCATCATGAGGACGCGAGGCTAATGCATCCATCATTGCAG--
-GCCATGTCTGCCTGCTGCGCCCATGGACGACGA---TGCATGATGATGGCGTACTCCGTGTAGATTAGCCCGGCTCAAT
CA----GTGCATGGCTAGCTAGATAGACGCTCGATCGCTAGCCAGCAGCACGTAGCAGTACTCCCGATCCCGAGTTCCGA
TGCCGTGTAATTATATGCTCGATTATTACATAAG----GAGTGGGTGAGTGAATGAATAAA-ATCCTTCCATTTCTCTTC
TCCGGATCTCGTTTTTCATCTT----CTTCTCGGATGCTCTGATAGCGATAGCGAAGGTTTCCTTGGAT--------CGT
CCGTCGCCGTTGCAAGGAACAAAGCCCGGCTGCTGG---CCCCTGTCCTTGTGCTCCTGGTAGCCAAGCAGGCTGTG---
-TTTACGGCCGCATACATACAACCCCGAAAAGCTGAAAGCAACTGCCTTTCCTTTTGTCTGCAAGGCGTGGGCCCGCT--
-CCTTAATTCGAGCTGCCTCCATG----GCTCTTTGCATGAGATCTTTTTTT---CTTTTTGCAAAAGAATGGACTTGAC
TTGAGCATAC---ATTGTTAATCACCACTCACTGCAAAGCCTTCCTCTGGAATGGCTTCTTTCTGTTTGTTTAAAACA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAACGCTGTCCGGCAAAGAGAATATACGAA-GGATAAAGACGGTGGTAGAGCAC
GGCAGGATAAAAAC------------------------------------------------------------------
---------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
S---------------------------S---------------------------S-----------S-SSSS------
-----------------SS---------------------S-SSS----SS----------------S------------
S-------------S--------------------------------------------------------SSSS-----
---------------------------------S----------------------------------------------
------S----------------------------SSSSS--SS------------------------------------
-----S---------S-------S-S------------------------------------------------------
---SSSSS-----------------------S----------S---S-S-------S-----------------------
------------------S-------------S---SSSSSSSSSSSSSSSS----------------------------
-------------SSSSS-SSS------------------------SS--S--------------------------S--
------------------------------------------------------------------S------------S
-------SSSS----------------------------------------S------------------S-S-S-S-S-
S-S-S---------SSSSSSSSSSS--SSSS-SSS-SSSSSSS-------------------------------------
----------------------------------------------SSS-------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------------S----------------------SS--------------------------S-----S-S----
--------------------------------------------------------------------------------
-----------S--------------------S-----------------------------------------------
---------------------------------------------S------------------SSS-------------
--------------------S-----------------------------------------------------------
S-----------------------------------------------SSS-----------------------------
---------------------------------S------------SSSSSS-------------S--------------
-----------------------S--------------------------------------------------------
----S---------------S--------------------------------------------S-----------S--
-----------------S----S--S------------------------------------------------------
-SSSSS-SSS-SS----SSSSSSSSSSSS-SS-----------------------------------------S------
---------SSSSS------------------------SS----------------------------------------
-S-------------------S----------------------------------------------------------
---------------------------------S------------------------------------S---------
---------------------------------------------S-------------S--------------------
-----------------------------------------------------S------S-------S-----------
-----S--------SSSSSSS-----S--------S-------------------S-----S------------------
S-S---------------------------S-------------------S-----------------------------
-S---------------------S----------------------S---------------SS--------SSSSSS--
--------------------------------------SSSS--S-----SS--------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S---------------------------------------------------S----S-------------SS
----------------S-----------------SSS-------------S--S--------------------------
--SSSS------------------------------------------SSS-----------------------------
---S-------------------S-------S--SSSS--------S---------------------------------
------------S---------SSSS--------------------------------S----------SSSSSSSS---
----------------------SSSSSSSSSS-S-SSSS---S----------------------------------SSS
S---------------S------------------------------------------------------------S--
------------------------SSSS------------------------SSS----------------S--------
------------------------------------------S--------------------S--------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----S-S-----------------------------------------------
---------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_29
---------ACCGTTCATTCCTGCATCGT---------------------------------------------------
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---------------------------------------
>reverse_1811
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------CCTCCCTCCCTCAGATTCCA----------
--------------------------------------------------------------------------------
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---------------------------------------
>forward_1087
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------AGGAAAGAGAGCTGCTGCAG---------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>reverse_3100
--------------------------------------------------------------------------------
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-----------------------------------------------------------GATGCGTCCATCATTGCAGC-
--------------------------------------------------------------------------------
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---------------------------------------
>forward_2354
--------------------------------------------------------------------------------
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--------------TTTTCAAGGCGCATTGGGTG----------------------------------------------
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---------------------------------------
>reverse_3419
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------CTTCCTTGGATCGTCCGTCC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
