Multiple sequence alignment - TraesCS5A01G227400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G227400 chr5A 100.000 3727 0 0 1 3727 443743958 443740232 0.000000e+00 6883.0
1 TraesCS5A01G227400 chr5D 93.097 3303 134 43 4 3273 342714245 342711004 0.000000e+00 4750.0
2 TraesCS5A01G227400 chr5D 98.000 50 0 1 2428 2477 411108569 411108521 6.630000e-13 86.1
3 TraesCS5A01G227400 chr5B 93.944 2873 106 31 481 3316 402752339 402749498 0.000000e+00 4279.0
4 TraesCS5A01G227400 chr5B 97.113 381 11 0 3347 3727 549361303 549361683 0.000000e+00 643.0
5 TraesCS5A01G227400 chr5B 95.000 320 12 2 3408 3727 69098149 69097834 2.000000e-137 499.0
6 TraesCS5A01G227400 chr5B 85.421 487 42 20 4 485 402759416 402758954 2.600000e-131 479.0
7 TraesCS5A01G227400 chr7A 97.215 395 11 0 3333 3727 321627762 321628156 0.000000e+00 669.0
8 TraesCS5A01G227400 chr7A 97.143 35 1 0 3373 3407 321638948 321638914 4.020000e-05 60.2
9 TraesCS5A01G227400 chr7B 96.287 404 15 0 3324 3727 702864407 702864810 0.000000e+00 664.0
10 TraesCS5A01G227400 chr7B 97.656 384 9 0 3344 3727 640474486 640474869 0.000000e+00 660.0
11 TraesCS5A01G227400 chr6A 97.382 382 10 0 3346 3727 262927 262546 0.000000e+00 651.0
12 TraesCS5A01G227400 chr1B 97.340 376 10 0 3352 3727 251238844 251238469 1.130000e-179 640.0
13 TraesCS5A01G227400 chr3B 97.583 331 8 0 3397 3727 402899356 402899026 5.400000e-158 568.0
14 TraesCS5A01G227400 chr2D 94.203 138 8 0 1402 1539 108313296 108313433 1.050000e-50 211.0
15 TraesCS5A01G227400 chr2D 92.000 50 4 0 1688 1737 627974698 627974747 1.860000e-08 71.3
16 TraesCS5A01G227400 chr2B 94.203 138 8 0 1402 1539 158146584 158146721 1.050000e-50 211.0
17 TraesCS5A01G227400 chr2B 92.000 50 4 0 1688 1737 771043863 771043912 1.860000e-08 71.3
18 TraesCS5A01G227400 chr2A 94.203 138 8 0 1402 1539 104450622 104450759 1.050000e-50 211.0
19 TraesCS5A01G227400 chr2A 92.000 50 4 0 1688 1737 758510337 758510386 1.860000e-08 71.3
20 TraesCS5A01G227400 chr4D 90.244 123 12 0 1158 1280 107710734 107710612 1.070000e-35 161.0
21 TraesCS5A01G227400 chr4B 90.244 123 12 0 1158 1280 168984879 168985001 1.070000e-35 161.0
22 TraesCS5A01G227400 chr4A 90.244 123 12 0 1158 1280 468603250 468603372 1.070000e-35 161.0
23 TraesCS5A01G227400 chr4A 83.838 99 16 0 1651 1749 610262265 610262167 1.100000e-15 95.3
24 TraesCS5A01G227400 chr6B 98.361 61 1 0 3359 3419 606377128 606377188 1.420000e-19 108.0
25 TraesCS5A01G227400 chr3A 95.556 45 2 0 3375 3419 409741058 409741102 5.160000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G227400 chr5A 443740232 443743958 3726 True 6883 6883 100.000 1 3727 1 chr5A.!!$R1 3726
1 TraesCS5A01G227400 chr5D 342711004 342714245 3241 True 4750 4750 93.097 4 3273 1 chr5D.!!$R1 3269
2 TraesCS5A01G227400 chr5B 402749498 402752339 2841 True 4279 4279 93.944 481 3316 1 chr5B.!!$R2 2835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 456 1.142474 GCTGCACCACAATTTTCTGC 58.858 50.0 0.0 0.0 0.00 4.26 F
1398 1446 0.686789 AGCTTTGTTGATTTGGGGGC 59.313 50.0 0.0 0.0 0.00 5.80 F
2206 2255 0.241213 CTCAACCGAGACGAGCAAGA 59.759 55.0 0.0 0.0 42.34 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2239 0.108615 CCATCTTGCTCGTCTCGGTT 60.109 55.000 0.0 0.0 0.00 4.44 R
2253 2302 1.686587 TCGTCAAGAAGCCAGTTCTCA 59.313 47.619 0.0 0.0 45.44 3.27 R
3697 3793 0.032678 CGATCCCGTCCCAGAATGAG 59.967 60.000 0.0 0.0 39.69 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 9.277783 ACATGCTGATCTAACTTATTATTGACC 57.722 33.333 0.00 0.00 0.00 4.02
216 217 7.875971 AGGTAGAATCATGAAAGTCACAAAAC 58.124 34.615 0.00 0.00 0.00 2.43
217 218 7.502226 AGGTAGAATCATGAAAGTCACAAAACA 59.498 33.333 0.00 0.00 0.00 2.83
314 315 8.451908 AAAAACTACTCAGACAAGTGCTAATT 57.548 30.769 0.00 0.00 0.00 1.40
315 316 8.451908 AAAACTACTCAGACAAGTGCTAATTT 57.548 30.769 0.00 0.00 0.00 1.82
316 317 8.451908 AAACTACTCAGACAAGTGCTAATTTT 57.548 30.769 0.00 0.00 0.00 1.82
317 318 7.659652 ACTACTCAGACAAGTGCTAATTTTC 57.340 36.000 0.00 0.00 0.00 2.29
318 319 7.217200 ACTACTCAGACAAGTGCTAATTTTCA 58.783 34.615 0.00 0.00 0.00 2.69
319 320 6.942532 ACTCAGACAAGTGCTAATTTTCAA 57.057 33.333 0.00 0.00 0.00 2.69
320 321 7.516198 ACTCAGACAAGTGCTAATTTTCAAT 57.484 32.000 0.00 0.00 0.00 2.57
321 322 7.365741 ACTCAGACAAGTGCTAATTTTCAATG 58.634 34.615 0.00 0.00 0.00 2.82
322 323 7.229306 ACTCAGACAAGTGCTAATTTTCAATGA 59.771 33.333 0.00 0.00 0.00 2.57
323 324 8.114331 TCAGACAAGTGCTAATTTTCAATGAT 57.886 30.769 0.00 0.00 0.00 2.45
324 325 8.239314 TCAGACAAGTGCTAATTTTCAATGATC 58.761 33.333 0.00 0.00 0.00 2.92
325 326 8.242053 CAGACAAGTGCTAATTTTCAATGATCT 58.758 33.333 0.00 0.00 0.00 2.75
326 327 9.453572 AGACAAGTGCTAATTTTCAATGATCTA 57.546 29.630 0.00 0.00 0.00 1.98
431 456 1.142474 GCTGCACCACAATTTTCTGC 58.858 50.000 0.00 0.00 0.00 4.26
439 464 5.163581 GCACCACAATTTTCTGCTCATCTAT 60.164 40.000 0.00 0.00 0.00 1.98
441 466 5.948162 ACCACAATTTTCTGCTCATCTATGT 59.052 36.000 0.00 0.00 0.00 2.29
455 480 8.540388 TGCTCATCTATGTAACTTTTTACTCCT 58.460 33.333 0.00 0.00 38.78 3.69
456 481 9.036671 GCTCATCTATGTAACTTTTTACTCCTC 57.963 37.037 0.00 0.00 38.78 3.71
457 482 9.239002 CTCATCTATGTAACTTTTTACTCCTCG 57.761 37.037 0.00 0.00 38.78 4.63
458 483 8.963725 TCATCTATGTAACTTTTTACTCCTCGA 58.036 33.333 0.00 0.00 38.78 4.04
465 490 5.633830 ACTTTTTACTCCTCGATCGTGTA 57.366 39.130 15.94 11.11 0.00 2.90
510 535 7.171508 TGACGAATTTGACTGCCTATATCATTC 59.828 37.037 0.00 0.00 0.00 2.67
533 564 8.483307 TTCTAAATACCTATCGTTTGTGAACC 57.517 34.615 0.00 0.00 31.93 3.62
556 587 4.380023 CGGAGATAGTAACCTAGATGCAGC 60.380 50.000 0.00 0.00 0.00 5.25
568 599 2.498167 AGATGCAGCGATCAATTACCC 58.502 47.619 0.00 0.00 0.00 3.69
576 607 4.858692 CAGCGATCAATTACCCAACAAAAG 59.141 41.667 0.00 0.00 0.00 2.27
579 610 5.923684 GCGATCAATTACCCAACAAAAGAAA 59.076 36.000 0.00 0.00 0.00 2.52
580 611 6.422400 GCGATCAATTACCCAACAAAAGAAAA 59.578 34.615 0.00 0.00 0.00 2.29
587 618 8.902540 ATTACCCAACAAAAGAAAAATCTTCC 57.097 30.769 0.00 0.00 0.00 3.46
640 671 5.106317 ACCACACAACCAATACGAATCATTC 60.106 40.000 0.00 0.00 0.00 2.67
650 681 8.137437 ACCAATACGAATCATTCAAAATCCATC 58.863 33.333 0.00 0.00 0.00 3.51
652 683 7.822161 ATACGAATCATTCAAAATCCATCCA 57.178 32.000 0.00 0.00 0.00 3.41
661 692 7.507956 TCATTCAAAATCCATCCATAGCAAGAT 59.492 33.333 0.00 0.00 0.00 2.40
662 693 8.799367 CATTCAAAATCCATCCATAGCAAGATA 58.201 33.333 0.00 0.00 0.00 1.98
687 718 4.510038 AGCACAATTCACTCCACATTTC 57.490 40.909 0.00 0.00 0.00 2.17
695 726 3.213506 TCACTCCACATTTCCAAGTGTG 58.786 45.455 7.74 7.74 44.02 3.82
740 771 1.146637 GCAGATATCCTGAAGCAGCG 58.853 55.000 0.00 0.00 45.78 5.18
855 886 1.199789 TCCTCATTTTCGTGTGCATGC 59.800 47.619 11.82 11.82 0.00 4.06
856 887 1.621107 CTCATTTTCGTGTGCATGCC 58.379 50.000 16.68 7.25 0.00 4.40
857 888 1.200716 CTCATTTTCGTGTGCATGCCT 59.799 47.619 16.68 0.00 0.00 4.75
858 889 2.419673 CTCATTTTCGTGTGCATGCCTA 59.580 45.455 16.68 0.21 0.00 3.93
859 890 2.419673 TCATTTTCGTGTGCATGCCTAG 59.580 45.455 16.68 4.18 0.00 3.02
860 891 1.890876 TTTTCGTGTGCATGCCTAGT 58.109 45.000 16.68 0.00 0.00 2.57
861 892 2.753055 TTTCGTGTGCATGCCTAGTA 57.247 45.000 16.68 0.00 0.00 1.82
903 934 1.594293 AAAGTCACGTCGCAGTGGG 60.594 57.895 0.00 0.00 42.10 4.61
942 973 1.831736 CCGGGTCAAACCTCAGTAGAT 59.168 52.381 0.00 0.00 38.64 1.98
1106 1137 3.181506 GCCAGCCAAGAAGATACTTTTCG 60.182 47.826 0.00 0.00 0.00 3.46
1325 1356 1.202582 CGTAGGGGATCATGGATCGTC 59.797 57.143 0.00 0.00 39.72 4.20
1327 1358 1.188219 AGGGGATCATGGATCGTCCG 61.188 60.000 0.00 0.00 40.17 4.79
1360 1399 2.079158 CGATCTTGTGTGCAGGTGAAT 58.921 47.619 0.00 0.00 0.00 2.57
1361 1400 2.094894 CGATCTTGTGTGCAGGTGAATC 59.905 50.000 0.00 0.00 0.00 2.52
1372 1420 2.159379 GCAGGTGAATCGGAATTGGAAC 60.159 50.000 0.00 0.00 0.00 3.62
1377 1425 4.698304 GGTGAATCGGAATTGGAACTAACA 59.302 41.667 0.00 0.00 0.00 2.41
1398 1446 0.686789 AGCTTTGTTGATTTGGGGGC 59.313 50.000 0.00 0.00 0.00 5.80
1561 1610 6.591062 GTGATGATAGCTTCCATCTCATCTTC 59.409 42.308 21.17 11.40 41.65 2.87
1564 1613 5.837438 TGATAGCTTCCATCTCATCTTCTCA 59.163 40.000 0.00 0.00 0.00 3.27
1566 1615 4.963373 AGCTTCCATCTCATCTTCTCATG 58.037 43.478 0.00 0.00 0.00 3.07
1606 1655 2.865551 GTTTGTTTCTTCCGTGGACGTA 59.134 45.455 0.00 0.00 37.74 3.57
1609 1658 3.125316 TGTTTCTTCCGTGGACGTAAAG 58.875 45.455 0.00 2.42 37.74 1.85
2206 2255 0.241213 CTCAACCGAGACGAGCAAGA 59.759 55.000 0.00 0.00 42.34 3.02
2253 2302 2.436646 CCGGCGTTCTCCATGCTT 60.437 61.111 6.01 0.00 37.58 3.91
2413 2462 6.525121 AGAACAAAAATTTAAGAAAGGCGC 57.475 33.333 0.00 0.00 0.00 6.53
2416 2465 1.990799 AAATTTAAGAAAGGCGCGGC 58.009 45.000 27.06 27.06 0.00 6.53
2457 2506 1.202405 AGCAGAAACAACAAAAGGCCG 60.202 47.619 0.00 0.00 0.00 6.13
2529 2587 8.850452 CCAGTTTGCTTAATCGTTTTAGATTTC 58.150 33.333 0.00 0.00 40.83 2.17
2816 2880 9.626045 CAGTTAAGTGGAGTTTAATTGATTTCC 57.374 33.333 2.05 0.00 32.59 3.13
2852 2916 7.608153 TGTTTTCAAGATCAGATGCATCAAAT 58.392 30.769 27.81 19.45 0.00 2.32
2857 2921 4.788679 AGATCAGATGCATCAAATGGACA 58.211 39.130 27.81 3.43 31.88 4.02
2948 3037 3.075882 TCTTCCATGAGGTTCCCAAATGT 59.924 43.478 0.00 0.00 35.89 2.71
2962 3051 2.896685 CCAAATGTAAAGCCAAGTCCCA 59.103 45.455 0.00 0.00 0.00 4.37
3024 3118 8.089597 TGAATCATGCATGTTTGTAATTTCTGT 58.910 29.630 24.13 0.00 0.00 3.41
3178 3274 5.597806 AGCTGTCATGCATTTATTTGATGG 58.402 37.500 0.00 0.00 34.99 3.51
3209 3305 6.389830 TGCTTGAAAATCACATGTTGTACT 57.610 33.333 0.00 0.00 0.00 2.73
3316 3412 8.609176 TGTAGAAAATCACAGTTAAACTCACAC 58.391 33.333 0.00 0.00 0.00 3.82
3317 3413 7.624360 AGAAAATCACAGTTAAACTCACACA 57.376 32.000 0.00 0.00 0.00 3.72
3318 3414 7.472543 AGAAAATCACAGTTAAACTCACACAC 58.527 34.615 0.00 0.00 0.00 3.82
3319 3415 6.751514 AAATCACAGTTAAACTCACACACA 57.248 33.333 0.00 0.00 0.00 3.72
3320 3416 5.734855 ATCACAGTTAAACTCACACACAC 57.265 39.130 0.00 0.00 0.00 3.82
3321 3417 4.570930 TCACAGTTAAACTCACACACACA 58.429 39.130 0.00 0.00 0.00 3.72
3322 3418 4.390603 TCACAGTTAAACTCACACACACAC 59.609 41.667 0.00 0.00 0.00 3.82
3323 3419 4.153296 CACAGTTAAACTCACACACACACA 59.847 41.667 0.00 0.00 0.00 3.72
3324 3420 4.153475 ACAGTTAAACTCACACACACACAC 59.847 41.667 0.00 0.00 0.00 3.82
3325 3421 4.153296 CAGTTAAACTCACACACACACACA 59.847 41.667 0.00 0.00 0.00 3.72
3326 3422 4.153475 AGTTAAACTCACACACACACACAC 59.847 41.667 0.00 0.00 0.00 3.82
3327 3423 2.177394 AACTCACACACACACACACA 57.823 45.000 0.00 0.00 0.00 3.72
3328 3424 2.401583 ACTCACACACACACACACAT 57.598 45.000 0.00 0.00 0.00 3.21
3329 3425 3.535280 ACTCACACACACACACACATA 57.465 42.857 0.00 0.00 0.00 2.29
3330 3426 3.194861 ACTCACACACACACACACATAC 58.805 45.455 0.00 0.00 0.00 2.39
3331 3427 3.194062 CTCACACACACACACACATACA 58.806 45.455 0.00 0.00 0.00 2.29
3332 3428 3.802866 TCACACACACACACACATACAT 58.197 40.909 0.00 0.00 0.00 2.29
3333 3429 4.950050 TCACACACACACACACATACATA 58.050 39.130 0.00 0.00 0.00 2.29
3334 3430 4.747605 TCACACACACACACACATACATAC 59.252 41.667 0.00 0.00 0.00 2.39
3335 3431 4.509600 CACACACACACACACATACATACA 59.490 41.667 0.00 0.00 0.00 2.29
3336 3432 5.179182 CACACACACACACACATACATACAT 59.821 40.000 0.00 0.00 0.00 2.29
3337 3433 6.367422 CACACACACACACACATACATACATA 59.633 38.462 0.00 0.00 0.00 2.29
3338 3434 6.367695 ACACACACACACACATACATACATAC 59.632 38.462 0.00 0.00 0.00 2.39
3339 3435 6.367422 CACACACACACACATACATACATACA 59.633 38.462 0.00 0.00 0.00 2.29
3340 3436 7.064490 CACACACACACACATACATACATACAT 59.936 37.037 0.00 0.00 0.00 2.29
3341 3437 8.254508 ACACACACACACATACATACATACATA 58.745 33.333 0.00 0.00 0.00 2.29
3342 3438 8.539674 CACACACACACATACATACATACATAC 58.460 37.037 0.00 0.00 0.00 2.39
3343 3439 8.254508 ACACACACACATACATACATACATACA 58.745 33.333 0.00 0.00 0.00 2.29
3344 3440 9.260002 CACACACACATACATACATACATACAT 57.740 33.333 0.00 0.00 0.00 2.29
3404 3500 8.602424 TGGAAAATACATCCTACCATATAGTGG 58.398 37.037 0.00 0.00 44.53 4.00
3416 3512 5.006896 CCATATAGTGGTAGGTACCTCCA 57.993 47.826 20.32 21.49 46.58 3.86
3419 3515 2.600439 GTGGTAGGTACCTCCACCC 58.400 63.158 32.59 23.20 46.58 4.61
3420 3516 0.979709 GTGGTAGGTACCTCCACCCC 60.980 65.000 32.59 20.52 46.58 4.95
3421 3517 1.157641 TGGTAGGTACCTCCACCCCT 61.158 60.000 25.10 1.69 46.58 4.79
3422 3518 0.690077 GGTAGGTACCTCCACCCCTG 60.690 65.000 20.32 0.00 43.10 4.45
3423 3519 0.042281 GTAGGTACCTCCACCCCTGT 59.958 60.000 20.32 0.00 39.62 4.00
3424 3520 0.794934 TAGGTACCTCCACCCCTGTT 59.205 55.000 20.32 0.00 39.62 3.16
3425 3521 0.840722 AGGTACCTCCACCCCTGTTG 60.841 60.000 9.21 0.00 39.62 3.33
3426 3522 1.002502 GTACCTCCACCCCTGTTGC 60.003 63.158 0.00 0.00 0.00 4.17
3427 3523 2.228480 TACCTCCACCCCTGTTGCC 61.228 63.158 0.00 0.00 0.00 4.52
3428 3524 4.722700 CCTCCACCCCTGTTGCCG 62.723 72.222 0.00 0.00 0.00 5.69
3429 3525 3.953775 CTCCACCCCTGTTGCCGT 61.954 66.667 0.00 0.00 0.00 5.68
3430 3526 3.901797 CTCCACCCCTGTTGCCGTC 62.902 68.421 0.00 0.00 0.00 4.79
3434 3530 4.096003 CCCCTGTTGCCGTCCGAT 62.096 66.667 0.00 0.00 0.00 4.18
3435 3531 2.511600 CCCTGTTGCCGTCCGATC 60.512 66.667 0.00 0.00 0.00 3.69
3436 3532 2.579201 CCTGTTGCCGTCCGATCT 59.421 61.111 0.00 0.00 0.00 2.75
3437 3533 1.811266 CCTGTTGCCGTCCGATCTG 60.811 63.158 0.00 0.00 0.00 2.90
3438 3534 1.215382 CTGTTGCCGTCCGATCTGA 59.785 57.895 0.00 0.00 0.00 3.27
3439 3535 1.078759 CTGTTGCCGTCCGATCTGAC 61.079 60.000 7.18 7.18 0.00 3.51
3440 3536 1.810030 GTTGCCGTCCGATCTGACC 60.810 63.158 11.20 0.00 31.35 4.02
3441 3537 3.014085 TTGCCGTCCGATCTGACCC 62.014 63.158 11.20 4.16 31.35 4.46
3442 3538 4.570663 GCCGTCCGATCTGACCCG 62.571 72.222 11.20 3.69 31.35 5.28
3443 3539 2.827190 CCGTCCGATCTGACCCGA 60.827 66.667 11.20 0.00 31.35 5.14
3444 3540 2.194212 CCGTCCGATCTGACCCGAT 61.194 63.158 11.20 0.00 31.35 4.18
3445 3541 1.283181 CGTCCGATCTGACCCGATC 59.717 63.158 11.20 0.00 37.13 3.69
3450 3546 1.300233 GATCTGACCCGATCGTGGC 60.300 63.158 15.09 5.17 31.43 5.01
3451 3547 3.138930 ATCTGACCCGATCGTGGCG 62.139 63.158 15.09 1.56 0.00 5.69
3452 3548 4.129737 CTGACCCGATCGTGGCGT 62.130 66.667 15.09 4.24 0.00 5.68
3453 3549 4.429212 TGACCCGATCGTGGCGTG 62.429 66.667 15.09 0.00 0.00 5.34
3454 3550 4.124351 GACCCGATCGTGGCGTGA 62.124 66.667 15.09 0.00 0.00 4.35
3455 3551 3.426117 GACCCGATCGTGGCGTGAT 62.426 63.158 15.09 0.00 0.00 3.06
3456 3552 2.961721 CCCGATCGTGGCGTGATG 60.962 66.667 15.09 0.00 0.00 3.07
3457 3553 2.104132 CCGATCGTGGCGTGATGA 59.896 61.111 15.09 0.00 0.00 2.92
3458 3554 1.300156 CCGATCGTGGCGTGATGAT 60.300 57.895 15.09 0.00 0.00 2.45
3459 3555 0.875908 CCGATCGTGGCGTGATGATT 60.876 55.000 15.09 0.00 0.00 2.57
3460 3556 1.601914 CCGATCGTGGCGTGATGATTA 60.602 52.381 15.09 0.00 0.00 1.75
3461 3557 2.124122 CGATCGTGGCGTGATGATTAA 58.876 47.619 7.03 0.00 0.00 1.40
3462 3558 2.097396 CGATCGTGGCGTGATGATTAAC 60.097 50.000 7.03 0.00 0.00 2.01
3463 3559 1.273688 TCGTGGCGTGATGATTAACG 58.726 50.000 0.00 0.00 42.61 3.18
3464 3560 0.300491 CGTGGCGTGATGATTAACGG 59.700 55.000 4.23 0.00 40.12 4.44
3465 3561 0.655733 GTGGCGTGATGATTAACGGG 59.344 55.000 4.23 0.00 40.12 5.28
3466 3562 0.250793 TGGCGTGATGATTAACGGGT 59.749 50.000 4.23 0.00 40.12 5.28
3467 3563 1.339247 TGGCGTGATGATTAACGGGTT 60.339 47.619 4.23 0.00 40.12 4.11
3468 3564 1.741145 GGCGTGATGATTAACGGGTTT 59.259 47.619 4.23 0.00 40.12 3.27
3469 3565 2.477189 GGCGTGATGATTAACGGGTTTG 60.477 50.000 4.23 0.00 40.12 2.93
3470 3566 2.477189 GCGTGATGATTAACGGGTTTGG 60.477 50.000 4.23 0.00 40.12 3.28
3471 3567 2.096819 CGTGATGATTAACGGGTTTGGG 59.903 50.000 0.00 0.00 36.17 4.12
3472 3568 3.086282 GTGATGATTAACGGGTTTGGGT 58.914 45.455 0.00 0.00 0.00 4.51
3473 3569 3.085533 TGATGATTAACGGGTTTGGGTG 58.914 45.455 0.00 0.00 0.00 4.61
3474 3570 1.912417 TGATTAACGGGTTTGGGTGG 58.088 50.000 0.00 0.00 0.00 4.61
3475 3571 1.424302 TGATTAACGGGTTTGGGTGGA 59.576 47.619 0.00 0.00 0.00 4.02
3476 3572 2.089201 GATTAACGGGTTTGGGTGGAG 58.911 52.381 0.00 0.00 0.00 3.86
3477 3573 0.845337 TTAACGGGTTTGGGTGGAGT 59.155 50.000 0.00 0.00 0.00 3.85
3478 3574 1.727062 TAACGGGTTTGGGTGGAGTA 58.273 50.000 0.00 0.00 0.00 2.59
3479 3575 0.845337 AACGGGTTTGGGTGGAGTAA 59.155 50.000 0.00 0.00 0.00 2.24
3480 3576 1.069775 ACGGGTTTGGGTGGAGTAAT 58.930 50.000 0.00 0.00 0.00 1.89
3481 3577 1.426215 ACGGGTTTGGGTGGAGTAATT 59.574 47.619 0.00 0.00 0.00 1.40
3482 3578 2.158430 ACGGGTTTGGGTGGAGTAATTT 60.158 45.455 0.00 0.00 0.00 1.82
3483 3579 2.894765 CGGGTTTGGGTGGAGTAATTTT 59.105 45.455 0.00 0.00 0.00 1.82
3484 3580 3.057104 CGGGTTTGGGTGGAGTAATTTTC 60.057 47.826 0.00 0.00 0.00 2.29
3485 3581 4.157246 GGGTTTGGGTGGAGTAATTTTCT 58.843 43.478 0.00 0.00 0.00 2.52
3486 3582 4.219944 GGGTTTGGGTGGAGTAATTTTCTC 59.780 45.833 0.00 0.00 0.00 2.87
3487 3583 5.077564 GGTTTGGGTGGAGTAATTTTCTCT 58.922 41.667 3.47 0.00 33.06 3.10
3488 3584 5.183331 GGTTTGGGTGGAGTAATTTTCTCTC 59.817 44.000 3.47 0.00 33.06 3.20
3489 3585 4.569719 TGGGTGGAGTAATTTTCTCTCC 57.430 45.455 0.00 0.00 45.46 3.71
3494 3590 3.532542 GGAGTAATTTTCTCTCCACCCG 58.467 50.000 5.69 0.00 44.85 5.28
3495 3591 3.197116 GGAGTAATTTTCTCTCCACCCGA 59.803 47.826 5.69 0.00 44.85 5.14
3496 3592 4.141688 GGAGTAATTTTCTCTCCACCCGAT 60.142 45.833 5.69 0.00 44.85 4.18
3497 3593 5.070047 GGAGTAATTTTCTCTCCACCCGATA 59.930 44.000 5.69 0.00 44.85 2.92
3498 3594 6.407752 GGAGTAATTTTCTCTCCACCCGATAA 60.408 42.308 5.69 0.00 44.85 1.75
3499 3595 6.954232 AGTAATTTTCTCTCCACCCGATAAA 58.046 36.000 0.00 0.00 0.00 1.40
3500 3596 7.574607 AGTAATTTTCTCTCCACCCGATAAAT 58.425 34.615 0.00 0.00 0.00 1.40
3501 3597 6.944234 AATTTTCTCTCCACCCGATAAATC 57.056 37.500 0.00 0.00 0.00 2.17
3502 3598 5.429681 TTTTCTCTCCACCCGATAAATCA 57.570 39.130 0.00 0.00 0.00 2.57
3503 3599 5.429681 TTTCTCTCCACCCGATAAATCAA 57.570 39.130 0.00 0.00 0.00 2.57
3504 3600 4.402056 TCTCTCCACCCGATAAATCAAC 57.598 45.455 0.00 0.00 0.00 3.18
3505 3601 3.134081 TCTCTCCACCCGATAAATCAACC 59.866 47.826 0.00 0.00 0.00 3.77
3506 3602 2.841266 TCTCCACCCGATAAATCAACCA 59.159 45.455 0.00 0.00 0.00 3.67
3507 3603 3.118408 TCTCCACCCGATAAATCAACCAG 60.118 47.826 0.00 0.00 0.00 4.00
3508 3604 2.574369 TCCACCCGATAAATCAACCAGT 59.426 45.455 0.00 0.00 0.00 4.00
3509 3605 3.775866 TCCACCCGATAAATCAACCAGTA 59.224 43.478 0.00 0.00 0.00 2.74
3510 3606 4.225492 TCCACCCGATAAATCAACCAGTAA 59.775 41.667 0.00 0.00 0.00 2.24
3511 3607 5.104277 TCCACCCGATAAATCAACCAGTAAT 60.104 40.000 0.00 0.00 0.00 1.89
3512 3608 6.099990 TCCACCCGATAAATCAACCAGTAATA 59.900 38.462 0.00 0.00 0.00 0.98
3513 3609 6.940298 CCACCCGATAAATCAACCAGTAATAT 59.060 38.462 0.00 0.00 0.00 1.28
3514 3610 7.447238 CCACCCGATAAATCAACCAGTAATATT 59.553 37.037 0.00 0.00 0.00 1.28
3515 3611 8.289618 CACCCGATAAATCAACCAGTAATATTG 58.710 37.037 0.00 0.00 0.00 1.90
3516 3612 7.996644 ACCCGATAAATCAACCAGTAATATTGT 59.003 33.333 0.00 0.00 0.00 2.71
3517 3613 8.846211 CCCGATAAATCAACCAGTAATATTGTT 58.154 33.333 0.00 0.00 0.00 2.83
3518 3614 9.878599 CCGATAAATCAACCAGTAATATTGTTC 57.121 33.333 0.00 0.00 0.00 3.18
3519 3615 9.878599 CGATAAATCAACCAGTAATATTGTTCC 57.121 33.333 0.00 0.00 0.00 3.62
3520 3616 9.878599 GATAAATCAACCAGTAATATTGTTCCG 57.121 33.333 0.00 0.00 0.00 4.30
3521 3617 7.931578 AAATCAACCAGTAATATTGTTCCGA 57.068 32.000 0.00 0.00 0.00 4.55
3522 3618 8.519799 AAATCAACCAGTAATATTGTTCCGAT 57.480 30.769 0.00 0.00 0.00 4.18
3523 3619 8.519799 AATCAACCAGTAATATTGTTCCGATT 57.480 30.769 0.00 0.00 0.00 3.34
3524 3620 7.931578 TCAACCAGTAATATTGTTCCGATTT 57.068 32.000 0.00 0.00 0.00 2.17
3525 3621 8.343168 TCAACCAGTAATATTGTTCCGATTTT 57.657 30.769 0.00 0.00 0.00 1.82
3526 3622 8.798402 TCAACCAGTAATATTGTTCCGATTTTT 58.202 29.630 0.00 0.00 0.00 1.94
3530 3626 9.180678 CCAGTAATATTGTTCCGATTTTTATGC 57.819 33.333 0.00 0.00 0.00 3.14
3531 3627 9.729023 CAGTAATATTGTTCCGATTTTTATGCA 57.271 29.630 0.00 0.00 0.00 3.96
3534 3630 8.592105 AATATTGTTCCGATTTTTATGCATGG 57.408 30.769 10.16 0.00 0.00 3.66
3535 3631 3.779759 TGTTCCGATTTTTATGCATGGC 58.220 40.909 10.16 0.00 0.00 4.40
3536 3632 3.446873 TGTTCCGATTTTTATGCATGGCT 59.553 39.130 10.16 0.00 0.00 4.75
3537 3633 4.642437 TGTTCCGATTTTTATGCATGGCTA 59.358 37.500 10.16 0.00 0.00 3.93
3538 3634 4.829064 TCCGATTTTTATGCATGGCTAC 57.171 40.909 10.16 0.00 0.00 3.58
3539 3635 3.249799 TCCGATTTTTATGCATGGCTACG 59.750 43.478 10.16 8.07 0.00 3.51
3540 3636 3.554524 CGATTTTTATGCATGGCTACGG 58.445 45.455 10.16 0.00 0.00 4.02
3541 3637 3.003275 CGATTTTTATGCATGGCTACGGT 59.997 43.478 10.16 0.00 0.00 4.83
3542 3638 4.212425 CGATTTTTATGCATGGCTACGGTA 59.788 41.667 10.16 0.00 0.00 4.02
3543 3639 5.106712 CGATTTTTATGCATGGCTACGGTAT 60.107 40.000 10.16 0.00 0.00 2.73
3544 3640 6.091577 CGATTTTTATGCATGGCTACGGTATA 59.908 38.462 10.16 0.00 0.00 1.47
3545 3641 7.360522 CGATTTTTATGCATGGCTACGGTATAA 60.361 37.037 10.16 0.00 0.00 0.98
3546 3642 6.548441 TTTTATGCATGGCTACGGTATAAC 57.452 37.500 10.16 0.00 0.00 1.89
3547 3643 3.762407 ATGCATGGCTACGGTATAACA 57.238 42.857 0.00 0.00 0.00 2.41
3548 3644 3.545366 TGCATGGCTACGGTATAACAA 57.455 42.857 0.00 0.00 0.00 2.83
3549 3645 3.199677 TGCATGGCTACGGTATAACAAC 58.800 45.455 0.00 0.00 0.00 3.32
3550 3646 2.546789 GCATGGCTACGGTATAACAACC 59.453 50.000 0.00 0.00 36.08 3.77
3551 3647 3.743269 GCATGGCTACGGTATAACAACCT 60.743 47.826 0.00 0.00 37.39 3.50
3552 3648 3.806625 TGGCTACGGTATAACAACCTC 57.193 47.619 0.00 0.00 37.39 3.85
3553 3649 3.098377 TGGCTACGGTATAACAACCTCA 58.902 45.455 0.00 0.00 37.39 3.86
3554 3650 3.119029 TGGCTACGGTATAACAACCTCAC 60.119 47.826 0.00 0.00 37.39 3.51
3555 3651 3.119029 GGCTACGGTATAACAACCTCACA 60.119 47.826 0.00 0.00 37.39 3.58
3556 3652 4.442472 GGCTACGGTATAACAACCTCACAT 60.442 45.833 0.00 0.00 37.39 3.21
3557 3653 4.743644 GCTACGGTATAACAACCTCACATC 59.256 45.833 0.00 0.00 37.39 3.06
3558 3654 4.133013 ACGGTATAACAACCTCACATCC 57.867 45.455 0.00 0.00 37.39 3.51
3559 3655 3.516300 ACGGTATAACAACCTCACATCCA 59.484 43.478 0.00 0.00 37.39 3.41
3560 3656 4.020039 ACGGTATAACAACCTCACATCCAA 60.020 41.667 0.00 0.00 37.39 3.53
3561 3657 4.331717 CGGTATAACAACCTCACATCCAAC 59.668 45.833 0.00 0.00 37.39 3.77
3562 3658 5.250200 GGTATAACAACCTCACATCCAACA 58.750 41.667 0.00 0.00 36.53 3.33
3563 3659 5.708230 GGTATAACAACCTCACATCCAACAA 59.292 40.000 0.00 0.00 36.53 2.83
3564 3660 6.377146 GGTATAACAACCTCACATCCAACAAT 59.623 38.462 0.00 0.00 36.53 2.71
3565 3661 7.554835 GGTATAACAACCTCACATCCAACAATA 59.445 37.037 0.00 0.00 36.53 1.90
3566 3662 8.952278 GTATAACAACCTCACATCCAACAATAA 58.048 33.333 0.00 0.00 0.00 1.40
3567 3663 6.723298 AACAACCTCACATCCAACAATAAA 57.277 33.333 0.00 0.00 0.00 1.40
3568 3664 6.331369 ACAACCTCACATCCAACAATAAAG 57.669 37.500 0.00 0.00 0.00 1.85
3569 3665 5.163513 CAACCTCACATCCAACAATAAAGC 58.836 41.667 0.00 0.00 0.00 3.51
3570 3666 3.763897 ACCTCACATCCAACAATAAAGCC 59.236 43.478 0.00 0.00 0.00 4.35
3571 3667 3.763360 CCTCACATCCAACAATAAAGCCA 59.237 43.478 0.00 0.00 0.00 4.75
3572 3668 4.220382 CCTCACATCCAACAATAAAGCCAA 59.780 41.667 0.00 0.00 0.00 4.52
3573 3669 5.105228 CCTCACATCCAACAATAAAGCCAAT 60.105 40.000 0.00 0.00 0.00 3.16
3574 3670 6.357579 TCACATCCAACAATAAAGCCAATT 57.642 33.333 0.00 0.00 0.00 2.32
3575 3671 6.767456 TCACATCCAACAATAAAGCCAATTT 58.233 32.000 0.00 0.00 34.72 1.82
3576 3672 7.222872 TCACATCCAACAATAAAGCCAATTTT 58.777 30.769 0.00 0.00 32.01 1.82
3577 3673 8.370940 TCACATCCAACAATAAAGCCAATTTTA 58.629 29.630 0.00 0.00 32.01 1.52
3578 3674 8.997323 CACATCCAACAATAAAGCCAATTTTAA 58.003 29.630 0.00 0.00 32.01 1.52
3579 3675 9.566432 ACATCCAACAATAAAGCCAATTTTAAA 57.434 25.926 0.00 0.00 32.01 1.52
3586 3682 9.791801 ACAATAAAGCCAATTTTAAAATCTGGT 57.208 25.926 25.93 18.32 33.24 4.00
3588 3684 8.702163 ATAAAGCCAATTTTAAAATCTGGTCG 57.298 30.769 25.93 13.21 33.24 4.79
3589 3685 4.494484 AGCCAATTTTAAAATCTGGTCGC 58.506 39.130 25.93 18.42 33.24 5.19
3590 3686 3.616821 GCCAATTTTAAAATCTGGTCGCC 59.383 43.478 25.93 15.32 33.24 5.54
3591 3687 3.857093 CCAATTTTAAAATCTGGTCGCCG 59.143 43.478 21.68 6.94 0.00 6.46
3592 3688 3.775661 ATTTTAAAATCTGGTCGCCGG 57.224 42.857 7.64 0.00 0.00 6.13
3593 3689 0.806241 TTTAAAATCTGGTCGCCGGC 59.194 50.000 19.07 19.07 0.00 6.13
3594 3690 1.363145 TTAAAATCTGGTCGCCGGCG 61.363 55.000 42.13 42.13 41.35 6.46
3595 3691 2.510064 TAAAATCTGGTCGCCGGCGT 62.510 55.000 44.16 26.32 40.74 5.68
3607 3703 3.499737 CGGCGTGCAACCCATCTC 61.500 66.667 0.00 0.00 0.00 2.75
3608 3704 3.499737 GGCGTGCAACCCATCTCG 61.500 66.667 0.00 0.00 0.00 4.04
3609 3705 2.742372 GCGTGCAACCCATCTCGT 60.742 61.111 0.00 0.00 0.00 4.18
3610 3706 2.740714 GCGTGCAACCCATCTCGTC 61.741 63.158 0.00 0.00 0.00 4.20
3611 3707 2.444624 CGTGCAACCCATCTCGTCG 61.445 63.158 0.00 0.00 0.00 5.12
3612 3708 2.100631 GTGCAACCCATCTCGTCGG 61.101 63.158 0.00 0.00 0.00 4.79
3614 3710 3.014085 GCAACCCATCTCGTCGGGA 62.014 63.158 0.00 0.00 46.34 5.14
3615 3711 1.153628 CAACCCATCTCGTCGGGAC 60.154 63.158 0.00 0.00 46.34 4.46
3616 3712 1.305046 AACCCATCTCGTCGGGACT 60.305 57.895 0.00 0.00 46.34 3.85
3617 3713 1.321074 AACCCATCTCGTCGGGACTC 61.321 60.000 0.00 0.00 46.34 3.36
3618 3714 1.753078 CCCATCTCGTCGGGACTCA 60.753 63.158 0.00 0.00 46.34 3.41
3619 3715 1.433879 CCATCTCGTCGGGACTCAC 59.566 63.158 0.00 0.00 0.00 3.51
3620 3716 1.433879 CATCTCGTCGGGACTCACC 59.566 63.158 0.00 0.00 38.08 4.02
3621 3717 1.001269 ATCTCGTCGGGACTCACCA 60.001 57.895 0.00 0.00 41.20 4.17
3622 3718 1.032657 ATCTCGTCGGGACTCACCAG 61.033 60.000 0.00 0.00 41.20 4.00
3623 3719 1.674651 CTCGTCGGGACTCACCAGA 60.675 63.158 0.00 0.00 40.34 3.86
3624 3720 1.001269 TCGTCGGGACTCACCAGAT 60.001 57.895 0.00 0.00 43.95 2.90
3625 3721 0.611062 TCGTCGGGACTCACCAGATT 60.611 55.000 0.00 0.00 43.95 2.40
3626 3722 0.246635 CGTCGGGACTCACCAGATTT 59.753 55.000 0.00 0.00 43.95 2.17
3627 3723 1.337823 CGTCGGGACTCACCAGATTTT 60.338 52.381 0.00 0.00 43.95 1.82
3628 3724 2.094390 CGTCGGGACTCACCAGATTTTA 60.094 50.000 0.00 0.00 43.95 1.52
3629 3725 3.430374 CGTCGGGACTCACCAGATTTTAT 60.430 47.826 0.00 0.00 43.95 1.40
3630 3726 4.514401 GTCGGGACTCACCAGATTTTATT 58.486 43.478 0.00 0.00 43.95 1.40
3631 3727 4.571176 GTCGGGACTCACCAGATTTTATTC 59.429 45.833 0.00 0.00 43.95 1.75
3632 3728 3.555956 CGGGACTCACCAGATTTTATTCG 59.444 47.826 0.00 0.00 41.20 3.34
3633 3729 4.514401 GGGACTCACCAGATTTTATTCGT 58.486 43.478 0.00 0.00 41.20 3.85
3634 3730 4.571176 GGGACTCACCAGATTTTATTCGTC 59.429 45.833 0.00 0.00 41.20 4.20
3635 3731 4.267928 GGACTCACCAGATTTTATTCGTCG 59.732 45.833 0.00 0.00 38.79 5.12
3636 3732 4.181578 ACTCACCAGATTTTATTCGTCGG 58.818 43.478 0.00 0.00 0.00 4.79
3637 3733 2.933906 TCACCAGATTTTATTCGTCGGC 59.066 45.455 0.00 0.00 0.00 5.54
3638 3734 2.031683 CACCAGATTTTATTCGTCGGCC 59.968 50.000 0.00 0.00 0.00 6.13
3639 3735 1.260561 CCAGATTTTATTCGTCGGCCG 59.739 52.381 22.12 22.12 38.13 6.13
3640 3736 0.935196 AGATTTTATTCGTCGGCCGC 59.065 50.000 23.51 15.21 36.19 6.53
3641 3737 0.041576 GATTTTATTCGTCGGCCGCC 60.042 55.000 23.51 8.79 36.19 6.13
3653 3749 2.594592 GCCGCCGCCTAAATCCAT 60.595 61.111 0.00 0.00 0.00 3.41
3654 3750 1.302192 GCCGCCGCCTAAATCCATA 60.302 57.895 0.00 0.00 0.00 2.74
3655 3751 1.574702 GCCGCCGCCTAAATCCATAC 61.575 60.000 0.00 0.00 0.00 2.39
3656 3752 0.953960 CCGCCGCCTAAATCCATACC 60.954 60.000 0.00 0.00 0.00 2.73
3657 3753 0.953960 CGCCGCCTAAATCCATACCC 60.954 60.000 0.00 0.00 0.00 3.69
3658 3754 0.953960 GCCGCCTAAATCCATACCCG 60.954 60.000 0.00 0.00 0.00 5.28
3659 3755 0.682852 CCGCCTAAATCCATACCCGA 59.317 55.000 0.00 0.00 0.00 5.14
3660 3756 1.278127 CCGCCTAAATCCATACCCGAT 59.722 52.381 0.00 0.00 0.00 4.18
3661 3757 2.290071 CCGCCTAAATCCATACCCGATT 60.290 50.000 0.00 0.00 0.00 3.34
3662 3758 2.742053 CGCCTAAATCCATACCCGATTG 59.258 50.000 0.00 0.00 30.39 2.67
3663 3759 3.081804 GCCTAAATCCATACCCGATTGG 58.918 50.000 0.00 0.00 41.37 3.16
3664 3760 3.244770 GCCTAAATCCATACCCGATTGGA 60.245 47.826 0.00 0.00 45.69 3.53
3669 3765 1.977854 TCCATACCCGATTGGATCTGG 59.022 52.381 0.00 0.00 37.10 3.86
3670 3766 1.977854 CCATACCCGATTGGATCTGGA 59.022 52.381 0.00 0.00 37.15 3.86
3671 3767 2.027745 CCATACCCGATTGGATCTGGAG 60.028 54.545 0.00 0.00 37.15 3.86
3672 3768 1.048601 TACCCGATTGGATCTGGAGC 58.951 55.000 0.00 0.00 37.15 4.70
3673 3769 0.982852 ACCCGATTGGATCTGGAGCA 60.983 55.000 0.00 0.00 37.15 4.26
3674 3770 0.399454 CCCGATTGGATCTGGAGCAT 59.601 55.000 0.00 0.00 35.89 3.79
3675 3771 1.520494 CCGATTGGATCTGGAGCATG 58.480 55.000 0.00 0.00 37.49 4.06
3676 3772 1.520494 CGATTGGATCTGGAGCATGG 58.480 55.000 0.00 0.00 0.00 3.66
3677 3773 1.071228 CGATTGGATCTGGAGCATGGA 59.929 52.381 0.00 0.00 0.00 3.41
3678 3774 2.290134 CGATTGGATCTGGAGCATGGAT 60.290 50.000 0.00 0.00 0.00 3.41
3679 3775 2.651382 TTGGATCTGGAGCATGGATG 57.349 50.000 0.00 0.00 0.00 3.51
3694 3790 5.874895 CATGGATGCATGATACTACAAGG 57.125 43.478 21.61 0.00 34.66 3.61
3695 3791 5.311265 CATGGATGCATGATACTACAAGGT 58.689 41.667 21.61 0.00 34.66 3.50
3696 3792 6.466812 CATGGATGCATGATACTACAAGGTA 58.533 40.000 21.61 0.00 34.66 3.08
3697 3793 5.853936 TGGATGCATGATACTACAAGGTAC 58.146 41.667 2.46 0.00 0.00 3.34
3698 3794 7.741921 CATGGATGCATGATACTACAAGGTACT 60.742 40.741 21.61 0.00 35.56 2.73
3699 3795 6.159988 GGATGCATGATACTACAAGGTACTC 58.840 44.000 2.46 0.00 38.49 2.59
3700 3796 6.239317 GGATGCATGATACTACAAGGTACTCA 60.239 42.308 2.46 0.00 38.49 3.41
3701 3797 6.731292 TGCATGATACTACAAGGTACTCAT 57.269 37.500 0.00 0.00 38.49 2.90
3702 3798 7.124573 TGCATGATACTACAAGGTACTCATT 57.875 36.000 0.00 0.00 38.49 2.57
3703 3799 7.210174 TGCATGATACTACAAGGTACTCATTC 58.790 38.462 0.00 0.00 38.49 2.67
3704 3800 7.069950 TGCATGATACTACAAGGTACTCATTCT 59.930 37.037 0.00 0.00 38.49 2.40
3705 3801 7.383572 GCATGATACTACAAGGTACTCATTCTG 59.616 40.741 0.00 0.00 38.49 3.02
3706 3802 7.348080 TGATACTACAAGGTACTCATTCTGG 57.652 40.000 0.00 0.00 38.49 3.86
3707 3803 6.323996 TGATACTACAAGGTACTCATTCTGGG 59.676 42.308 0.00 0.00 38.49 4.45
3708 3804 4.684724 ACTACAAGGTACTCATTCTGGGA 58.315 43.478 0.00 0.00 38.49 4.37
3709 3805 3.983044 ACAAGGTACTCATTCTGGGAC 57.017 47.619 0.00 0.00 38.49 4.46
3710 3806 2.233922 ACAAGGTACTCATTCTGGGACG 59.766 50.000 0.00 0.00 38.49 4.79
3711 3807 1.486211 AGGTACTCATTCTGGGACGG 58.514 55.000 0.00 0.00 0.00 4.79
3712 3808 0.464452 GGTACTCATTCTGGGACGGG 59.536 60.000 0.00 0.00 33.92 5.28
3713 3809 1.481871 GTACTCATTCTGGGACGGGA 58.518 55.000 0.00 0.00 33.92 5.14
3714 3810 2.040178 GTACTCATTCTGGGACGGGAT 58.960 52.381 0.00 0.00 28.90 3.85
3715 3811 1.123928 ACTCATTCTGGGACGGGATC 58.876 55.000 0.00 0.00 23.62 3.36
3716 3812 0.032678 CTCATTCTGGGACGGGATCG 59.967 60.000 0.00 0.00 43.02 3.69
3717 3813 1.069765 CATTCTGGGACGGGATCGG 59.930 63.158 0.00 0.00 41.39 4.18
3718 3814 1.075525 ATTCTGGGACGGGATCGGA 60.076 57.895 0.00 0.00 41.39 4.55
3719 3815 1.115930 ATTCTGGGACGGGATCGGAG 61.116 60.000 0.00 0.00 41.39 4.63
3720 3816 2.123854 CTGGGACGGGATCGGAGA 60.124 66.667 0.00 0.00 45.75 3.71
3721 3817 2.441532 TGGGACGGGATCGGAGAC 60.442 66.667 0.00 0.00 42.51 3.36
3722 3818 2.441532 GGGACGGGATCGGAGACA 60.442 66.667 0.00 0.00 42.51 3.41
3723 3819 2.783288 GGGACGGGATCGGAGACAC 61.783 68.421 0.00 0.00 42.51 3.67
3724 3820 1.753463 GGACGGGATCGGAGACACT 60.753 63.158 0.00 0.00 42.51 3.55
3725 3821 1.321074 GGACGGGATCGGAGACACTT 61.321 60.000 0.00 0.00 42.51 3.16
3726 3822 0.531200 GACGGGATCGGAGACACTTT 59.469 55.000 0.00 0.00 42.51 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.632764 TGCATTGCACATACACAATTGTTAC 59.367 36.000 8.77 0.00 34.32 2.50
72 73 9.277783 GGTCAATAATAAGTTAGATCAGCATGT 57.722 33.333 0.00 0.00 37.40 3.21
241 242 9.823647 ATAGACGATTTAGATTGATTCTTGTGT 57.176 29.630 0.00 0.00 35.79 3.72
289 290 8.451908 AATTAGCACTTGTCTGAGTAGTTTTT 57.548 30.769 0.00 0.00 0.00 1.94
293 294 7.217200 TGAAAATTAGCACTTGTCTGAGTAGT 58.783 34.615 0.00 0.00 0.00 2.73
294 295 7.658179 TGAAAATTAGCACTTGTCTGAGTAG 57.342 36.000 0.00 0.00 0.00 2.57
295 296 8.506437 CATTGAAAATTAGCACTTGTCTGAGTA 58.494 33.333 0.00 0.00 0.00 2.59
296 297 6.942532 TTGAAAATTAGCACTTGTCTGAGT 57.057 33.333 0.00 0.00 0.00 3.41
297 298 7.587629 TCATTGAAAATTAGCACTTGTCTGAG 58.412 34.615 0.00 0.00 0.00 3.35
298 299 7.509141 TCATTGAAAATTAGCACTTGTCTGA 57.491 32.000 0.00 0.00 0.00 3.27
299 300 8.242053 AGATCATTGAAAATTAGCACTTGTCTG 58.758 33.333 0.00 0.00 0.00 3.51
300 301 8.345724 AGATCATTGAAAATTAGCACTTGTCT 57.654 30.769 0.00 0.00 0.00 3.41
302 303 9.846248 GTTAGATCATTGAAAATTAGCACTTGT 57.154 29.630 0.00 0.00 0.00 3.16
313 314 9.060347 GGCTCATGATAGTTAGATCATTGAAAA 57.940 33.333 0.00 0.00 42.69 2.29
314 315 7.663081 GGGCTCATGATAGTTAGATCATTGAAA 59.337 37.037 0.00 0.00 42.69 2.69
315 316 7.164122 GGGCTCATGATAGTTAGATCATTGAA 58.836 38.462 0.00 0.00 42.69 2.69
316 317 6.270695 TGGGCTCATGATAGTTAGATCATTGA 59.729 38.462 0.00 0.00 42.69 2.57
317 318 6.470278 TGGGCTCATGATAGTTAGATCATTG 58.530 40.000 0.00 0.00 42.69 2.82
318 319 6.692849 TGGGCTCATGATAGTTAGATCATT 57.307 37.500 0.00 0.00 42.69 2.57
319 320 6.887886 ATGGGCTCATGATAGTTAGATCAT 57.112 37.500 0.00 0.00 45.51 2.45
320 321 6.692849 AATGGGCTCATGATAGTTAGATCA 57.307 37.500 0.00 0.00 40.08 2.92
321 322 8.072321 TCTAATGGGCTCATGATAGTTAGATC 57.928 38.462 0.00 0.00 33.18 2.75
322 323 8.621126 ATCTAATGGGCTCATGATAGTTAGAT 57.379 34.615 0.00 5.93 33.18 1.98
323 324 8.441311 AATCTAATGGGCTCATGATAGTTAGA 57.559 34.615 0.00 3.45 33.18 2.10
326 327 9.866655 TTTTAATCTAATGGGCTCATGATAGTT 57.133 29.630 0.00 0.00 33.18 2.24
399 422 1.340017 GGTGCAGCATCTGGTTAAGGA 60.340 52.381 11.86 0.00 31.21 3.36
431 456 9.239002 CGAGGAGTAAAAAGTTACATAGATGAG 57.761 37.037 0.00 0.00 41.88 2.90
439 464 5.860182 CACGATCGAGGAGTAAAAAGTTACA 59.140 40.000 24.34 0.00 41.88 2.41
441 466 6.017400 ACACGATCGAGGAGTAAAAAGTTA 57.983 37.500 24.34 0.00 0.00 2.24
455 480 5.224135 TCATTTTTCTGTGTACACGATCGA 58.776 37.500 24.34 11.39 0.00 3.59
456 481 5.509605 TCATTTTTCTGTGTACACGATCG 57.490 39.130 20.61 14.88 0.00 3.69
457 482 6.831769 ACATCATTTTTCTGTGTACACGATC 58.168 36.000 20.61 0.00 0.00 3.69
458 483 6.801539 ACATCATTTTTCTGTGTACACGAT 57.198 33.333 20.61 11.39 0.00 3.73
465 490 6.559810 TCGTCAAAACATCATTTTTCTGTGT 58.440 32.000 0.00 0.00 0.00 3.72
510 535 6.019318 CCGGTTCACAAACGATAGGTATTTAG 60.019 42.308 0.00 0.00 43.77 1.85
527 552 5.128919 TCTAGGTTACTATCTCCGGTTCAC 58.871 45.833 0.00 0.00 0.00 3.18
533 564 4.380023 GCTGCATCTAGGTTACTATCTCCG 60.380 50.000 0.00 0.00 0.00 4.63
556 587 7.938563 TTTTCTTTTGTTGGGTAATTGATCG 57.061 32.000 0.00 0.00 0.00 3.69
576 607 9.371136 GTGAGGAATTAAATGGGAAGATTTTTC 57.629 33.333 0.00 0.00 0.00 2.29
579 610 8.434589 TTGTGAGGAATTAAATGGGAAGATTT 57.565 30.769 0.00 0.00 0.00 2.17
580 611 8.613922 ATTGTGAGGAATTAAATGGGAAGATT 57.386 30.769 0.00 0.00 0.00 2.40
587 618 9.586435 GTCCTTTTATTGTGAGGAATTAAATGG 57.414 33.333 0.00 0.00 41.02 3.16
650 681 8.570488 TGAATTGTGCTTTATATCTTGCTATGG 58.430 33.333 0.00 0.00 0.00 2.74
652 683 9.347240 AGTGAATTGTGCTTTATATCTTGCTAT 57.653 29.630 0.00 0.00 0.00 2.97
661 692 7.701539 AATGTGGAGTGAATTGTGCTTTATA 57.298 32.000 0.00 0.00 0.00 0.98
662 693 6.594788 AATGTGGAGTGAATTGTGCTTTAT 57.405 33.333 0.00 0.00 0.00 1.40
665 696 4.262164 GGAAATGTGGAGTGAATTGTGCTT 60.262 41.667 0.00 0.00 0.00 3.91
740 771 3.118038 TGATGGGTTTGGTATAGTGCCTC 60.118 47.826 0.00 0.00 0.00 4.70
836 867 1.621107 GCATGCACACGAAAATGAGG 58.379 50.000 14.21 0.00 0.00 3.86
903 934 3.376540 CGGAGTAGAATGCTGAGCTAAC 58.623 50.000 5.83 0.00 0.00 2.34
942 973 4.099573 GGAGAAATGCTAGCTACCACACTA 59.900 45.833 17.23 0.00 0.00 2.74
1027 1058 5.065988 GCAATTAAGCGGATGAGGTAAAAGA 59.934 40.000 0.00 0.00 0.00 2.52
1309 1340 1.293498 CGGACGATCCATGATCCCC 59.707 63.158 0.00 0.00 35.91 4.81
1337 1376 0.671781 ACCTGCACACAAGATCGAGC 60.672 55.000 0.00 0.00 0.00 5.03
1360 1399 4.394729 AGCTTTGTTAGTTCCAATTCCGA 58.605 39.130 0.00 0.00 0.00 4.55
1361 1400 4.766404 AGCTTTGTTAGTTCCAATTCCG 57.234 40.909 0.00 0.00 0.00 4.30
1377 1425 2.487086 GCCCCCAAATCAACAAAGCTTT 60.487 45.455 5.69 5.69 0.00 3.51
1398 1446 4.170062 CGCATCAGCCCTGCAACG 62.170 66.667 3.98 0.00 39.64 4.10
1561 1610 5.362556 AACAACAAGACGGAAATCATGAG 57.637 39.130 0.09 0.00 0.00 2.90
1564 1613 5.514274 ACAAACAACAAGACGGAAATCAT 57.486 34.783 0.00 0.00 0.00 2.45
1566 1615 5.575218 ACAAACAAACAACAAGACGGAAATC 59.425 36.000 0.00 0.00 0.00 2.17
1606 1655 7.052873 AGCTCATATCAGCAATTCTGTACTTT 58.947 34.615 0.03 0.00 42.40 2.66
1609 1658 6.656945 CAAGCTCATATCAGCAATTCTGTAC 58.343 40.000 0.03 0.00 42.40 2.90
1692 1741 5.970317 TCCAGTAGTTCTTGATGTCGTTA 57.030 39.130 0.00 0.00 0.00 3.18
2100 2149 4.767255 CCGTCCCAGGAGCACTGC 62.767 72.222 3.12 0.00 46.14 4.40
2190 2239 0.108615 CCATCTTGCTCGTCTCGGTT 60.109 55.000 0.00 0.00 0.00 4.44
2253 2302 1.686587 TCGTCAAGAAGCCAGTTCTCA 59.313 47.619 0.00 0.00 45.44 3.27
2434 2483 3.118542 GCCTTTTGTTGTTTCTGCTCAG 58.881 45.455 0.00 0.00 0.00 3.35
2529 2587 4.726416 ACATCGCAAAGAGCAACTAATTG 58.274 39.130 0.00 0.00 46.13 2.32
2852 2916 7.931578 ACTAAAATTTCCGATAACATGTCCA 57.068 32.000 0.00 0.00 0.00 4.02
3086 3180 2.096174 GCGTACCATTTTAATGTGGCGA 59.904 45.455 6.56 0.00 39.13 5.54
3209 3305 5.013079 TCAGCTGAAGTAAAGAAAGGATCCA 59.987 40.000 15.67 0.00 0.00 3.41
3292 3388 8.609176 GTGTGTGAGTTTAACTGTGATTTTCTA 58.391 33.333 0.93 0.00 0.00 2.10
3294 3390 7.218204 GTGTGTGTGAGTTTAACTGTGATTTTC 59.782 37.037 0.93 0.00 0.00 2.29
3316 3412 6.959671 TGTATGTATGTATGTGTGTGTGTG 57.040 37.500 0.00 0.00 0.00 3.82
3317 3413 8.254508 TGTATGTATGTATGTATGTGTGTGTGT 58.745 33.333 0.00 0.00 0.00 3.72
3318 3414 8.641499 TGTATGTATGTATGTATGTGTGTGTG 57.359 34.615 0.00 0.00 0.00 3.82
3378 3474 8.602424 CCACTATATGGTAGGATGTATTTTCCA 58.398 37.037 0.00 0.00 44.46 3.53
3403 3499 0.690077 CAGGGGTGGAGGTACCTACC 60.690 65.000 22.05 21.76 46.82 3.18
3404 3500 0.042281 ACAGGGGTGGAGGTACCTAC 59.958 60.000 18.19 18.19 40.66 3.18
3405 3501 0.794934 AACAGGGGTGGAGGTACCTA 59.205 55.000 16.29 0.00 40.66 3.08
3406 3502 0.840722 CAACAGGGGTGGAGGTACCT 60.841 60.000 16.26 16.26 40.66 3.08
3407 3503 1.683441 CAACAGGGGTGGAGGTACC 59.317 63.158 2.73 2.73 40.10 3.34
3408 3504 1.002502 GCAACAGGGGTGGAGGTAC 60.003 63.158 0.00 0.00 0.00 3.34
3409 3505 2.228480 GGCAACAGGGGTGGAGGTA 61.228 63.158 0.00 0.00 0.00 3.08
3410 3506 3.580319 GGCAACAGGGGTGGAGGT 61.580 66.667 0.00 0.00 0.00 3.85
3411 3507 4.722700 CGGCAACAGGGGTGGAGG 62.723 72.222 0.00 0.00 0.00 4.30
3412 3508 3.901797 GACGGCAACAGGGGTGGAG 62.902 68.421 0.00 0.00 0.00 3.86
3413 3509 3.948719 GACGGCAACAGGGGTGGA 61.949 66.667 0.00 0.00 0.00 4.02
3417 3513 4.096003 ATCGGACGGCAACAGGGG 62.096 66.667 0.00 0.00 0.00 4.79
3418 3514 2.511600 GATCGGACGGCAACAGGG 60.512 66.667 0.00 0.00 0.00 4.45
3419 3515 1.811266 CAGATCGGACGGCAACAGG 60.811 63.158 0.00 0.00 0.00 4.00
3420 3516 1.078759 GTCAGATCGGACGGCAACAG 61.079 60.000 10.29 0.00 0.00 3.16
3421 3517 1.080093 GTCAGATCGGACGGCAACA 60.080 57.895 10.29 0.00 0.00 3.33
3422 3518 1.810030 GGTCAGATCGGACGGCAAC 60.810 63.158 18.01 2.22 38.70 4.17
3423 3519 2.577059 GGTCAGATCGGACGGCAA 59.423 61.111 18.01 0.00 38.70 4.52
3424 3520 3.458163 GGGTCAGATCGGACGGCA 61.458 66.667 18.01 0.00 38.70 5.69
3425 3521 4.570663 CGGGTCAGATCGGACGGC 62.571 72.222 18.01 6.78 38.70 5.68
3426 3522 2.131294 GATCGGGTCAGATCGGACGG 62.131 65.000 18.01 13.00 37.82 4.79
3427 3523 1.283181 GATCGGGTCAGATCGGACG 59.717 63.158 18.01 9.30 37.82 4.79
3432 3528 1.300233 GCCACGATCGGGTCAGATC 60.300 63.158 20.98 0.57 42.58 2.75
3433 3529 2.815308 GCCACGATCGGGTCAGAT 59.185 61.111 20.98 0.00 0.00 2.90
3434 3530 3.822192 CGCCACGATCGGGTCAGA 61.822 66.667 20.98 0.00 0.00 3.27
3435 3531 4.129737 ACGCCACGATCGGGTCAG 62.130 66.667 20.98 11.03 0.00 3.51
3436 3532 4.429212 CACGCCACGATCGGGTCA 62.429 66.667 20.98 0.00 0.00 4.02
3437 3533 3.426117 ATCACGCCACGATCGGGTC 62.426 63.158 20.98 3.55 0.00 4.46
3438 3534 3.458163 ATCACGCCACGATCGGGT 61.458 61.111 20.98 8.72 0.00 5.28
3439 3535 2.699576 ATCATCACGCCACGATCGGG 62.700 60.000 20.98 16.53 0.00 5.14
3440 3536 0.875908 AATCATCACGCCACGATCGG 60.876 55.000 20.98 8.32 0.00 4.18
3441 3537 1.766069 TAATCATCACGCCACGATCG 58.234 50.000 14.88 14.88 0.00 3.69
3442 3538 2.097396 CGTTAATCATCACGCCACGATC 60.097 50.000 0.00 0.00 0.00 3.69
3443 3539 1.858458 CGTTAATCATCACGCCACGAT 59.142 47.619 0.00 0.00 0.00 3.73
3444 3540 1.273688 CGTTAATCATCACGCCACGA 58.726 50.000 0.00 0.00 0.00 4.35
3445 3541 0.300491 CCGTTAATCATCACGCCACG 59.700 55.000 0.00 0.00 34.98 4.94
3446 3542 0.655733 CCCGTTAATCATCACGCCAC 59.344 55.000 0.00 0.00 34.98 5.01
3447 3543 0.250793 ACCCGTTAATCATCACGCCA 59.749 50.000 0.00 0.00 34.98 5.69
3448 3544 1.375551 AACCCGTTAATCATCACGCC 58.624 50.000 0.00 0.00 34.98 5.68
3449 3545 2.477189 CCAAACCCGTTAATCATCACGC 60.477 50.000 0.00 0.00 34.98 5.34
3450 3546 2.096819 CCCAAACCCGTTAATCATCACG 59.903 50.000 0.00 0.00 36.12 4.35
3451 3547 3.086282 ACCCAAACCCGTTAATCATCAC 58.914 45.455 0.00 0.00 0.00 3.06
3452 3548 3.085533 CACCCAAACCCGTTAATCATCA 58.914 45.455 0.00 0.00 0.00 3.07
3453 3549 2.425668 CCACCCAAACCCGTTAATCATC 59.574 50.000 0.00 0.00 0.00 2.92
3454 3550 2.041891 TCCACCCAAACCCGTTAATCAT 59.958 45.455 0.00 0.00 0.00 2.45
3455 3551 1.424302 TCCACCCAAACCCGTTAATCA 59.576 47.619 0.00 0.00 0.00 2.57
3456 3552 2.089201 CTCCACCCAAACCCGTTAATC 58.911 52.381 0.00 0.00 0.00 1.75
3457 3553 1.426215 ACTCCACCCAAACCCGTTAAT 59.574 47.619 0.00 0.00 0.00 1.40
3458 3554 0.845337 ACTCCACCCAAACCCGTTAA 59.155 50.000 0.00 0.00 0.00 2.01
3459 3555 1.727062 TACTCCACCCAAACCCGTTA 58.273 50.000 0.00 0.00 0.00 3.18
3460 3556 0.845337 TTACTCCACCCAAACCCGTT 59.155 50.000 0.00 0.00 0.00 4.44
3461 3557 1.069775 ATTACTCCACCCAAACCCGT 58.930 50.000 0.00 0.00 0.00 5.28
3462 3558 2.209690 AATTACTCCACCCAAACCCG 57.790 50.000 0.00 0.00 0.00 5.28
3463 3559 4.157246 AGAAAATTACTCCACCCAAACCC 58.843 43.478 0.00 0.00 0.00 4.11
3464 3560 5.077564 AGAGAAAATTACTCCACCCAAACC 58.922 41.667 8.37 0.00 35.27 3.27
3465 3561 5.183331 GGAGAGAAAATTACTCCACCCAAAC 59.817 44.000 0.00 0.00 46.42 2.93
3466 3562 5.321927 GGAGAGAAAATTACTCCACCCAAA 58.678 41.667 0.00 0.00 46.42 3.28
3467 3563 4.918588 GGAGAGAAAATTACTCCACCCAA 58.081 43.478 0.00 0.00 46.42 4.12
3468 3564 4.569719 GGAGAGAAAATTACTCCACCCA 57.430 45.455 0.00 0.00 46.42 4.51
3474 3570 4.467198 TCGGGTGGAGAGAAAATTACTC 57.533 45.455 4.92 4.92 34.95 2.59
3475 3571 6.555463 TTATCGGGTGGAGAGAAAATTACT 57.445 37.500 0.00 0.00 0.00 2.24
3476 3572 7.497909 TGATTTATCGGGTGGAGAGAAAATTAC 59.502 37.037 0.00 0.00 33.39 1.89
3477 3573 7.570132 TGATTTATCGGGTGGAGAGAAAATTA 58.430 34.615 0.00 0.00 33.39 1.40
3478 3574 6.423182 TGATTTATCGGGTGGAGAGAAAATT 58.577 36.000 0.00 0.00 33.39 1.82
3479 3575 6.001449 TGATTTATCGGGTGGAGAGAAAAT 57.999 37.500 0.00 0.00 33.39 1.82
3480 3576 5.429681 TGATTTATCGGGTGGAGAGAAAA 57.570 39.130 0.00 0.00 33.39 2.29
3481 3577 5.183228 GTTGATTTATCGGGTGGAGAGAAA 58.817 41.667 0.00 0.00 34.04 2.52
3482 3578 4.383770 GGTTGATTTATCGGGTGGAGAGAA 60.384 45.833 0.00 0.00 0.00 2.87
3483 3579 3.134081 GGTTGATTTATCGGGTGGAGAGA 59.866 47.826 0.00 0.00 0.00 3.10
3484 3580 3.118408 TGGTTGATTTATCGGGTGGAGAG 60.118 47.826 0.00 0.00 0.00 3.20
3485 3581 2.841266 TGGTTGATTTATCGGGTGGAGA 59.159 45.455 0.00 0.00 0.00 3.71
3486 3582 3.206150 CTGGTTGATTTATCGGGTGGAG 58.794 50.000 0.00 0.00 0.00 3.86
3487 3583 2.574369 ACTGGTTGATTTATCGGGTGGA 59.426 45.455 0.00 0.00 0.00 4.02
3488 3584 2.999331 ACTGGTTGATTTATCGGGTGG 58.001 47.619 0.00 0.00 0.00 4.61
3489 3585 7.979444 ATATTACTGGTTGATTTATCGGGTG 57.021 36.000 0.00 0.00 0.00 4.61
3490 3586 7.996644 ACAATATTACTGGTTGATTTATCGGGT 59.003 33.333 0.00 0.00 0.00 5.28
3491 3587 8.391075 ACAATATTACTGGTTGATTTATCGGG 57.609 34.615 0.00 0.00 0.00 5.14
3492 3588 9.878599 GAACAATATTACTGGTTGATTTATCGG 57.121 33.333 0.00 0.00 0.00 4.18
3493 3589 9.878599 GGAACAATATTACTGGTTGATTTATCG 57.121 33.333 0.00 0.00 0.00 2.92
3494 3590 9.878599 CGGAACAATATTACTGGTTGATTTATC 57.121 33.333 0.00 0.00 0.00 1.75
3495 3591 9.621629 TCGGAACAATATTACTGGTTGATTTAT 57.378 29.630 0.00 0.00 0.00 1.40
3496 3592 9.621629 ATCGGAACAATATTACTGGTTGATTTA 57.378 29.630 0.00 0.00 0.00 1.40
3497 3593 7.931578 TCGGAACAATATTACTGGTTGATTT 57.068 32.000 0.00 0.00 0.00 2.17
3498 3594 8.519799 AATCGGAACAATATTACTGGTTGATT 57.480 30.769 0.00 0.00 0.00 2.57
3499 3595 8.519799 AAATCGGAACAATATTACTGGTTGAT 57.480 30.769 0.00 0.00 0.00 2.57
3500 3596 7.931578 AAATCGGAACAATATTACTGGTTGA 57.068 32.000 0.00 0.00 0.00 3.18
3501 3597 8.980143 AAAAATCGGAACAATATTACTGGTTG 57.020 30.769 0.00 0.00 0.00 3.77
3504 3600 9.180678 GCATAAAAATCGGAACAATATTACTGG 57.819 33.333 0.00 0.00 0.00 4.00
3505 3601 9.729023 TGCATAAAAATCGGAACAATATTACTG 57.271 29.630 0.00 0.00 0.00 2.74
3508 3604 9.689976 CCATGCATAAAAATCGGAACAATATTA 57.310 29.630 0.00 0.00 0.00 0.98
3509 3605 7.171337 GCCATGCATAAAAATCGGAACAATATT 59.829 33.333 0.00 0.00 0.00 1.28
3510 3606 6.646240 GCCATGCATAAAAATCGGAACAATAT 59.354 34.615 0.00 0.00 0.00 1.28
3511 3607 5.982516 GCCATGCATAAAAATCGGAACAATA 59.017 36.000 0.00 0.00 0.00 1.90
3512 3608 4.810491 GCCATGCATAAAAATCGGAACAAT 59.190 37.500 0.00 0.00 0.00 2.71
3513 3609 4.081752 AGCCATGCATAAAAATCGGAACAA 60.082 37.500 0.00 0.00 0.00 2.83
3514 3610 3.446873 AGCCATGCATAAAAATCGGAACA 59.553 39.130 0.00 0.00 0.00 3.18
3515 3611 4.045636 AGCCATGCATAAAAATCGGAAC 57.954 40.909 0.00 0.00 0.00 3.62
3516 3612 4.260990 CGTAGCCATGCATAAAAATCGGAA 60.261 41.667 0.00 0.00 0.00 4.30
3517 3613 3.249799 CGTAGCCATGCATAAAAATCGGA 59.750 43.478 0.00 0.00 0.00 4.55
3518 3614 3.554524 CGTAGCCATGCATAAAAATCGG 58.445 45.455 0.00 0.00 0.00 4.18
3519 3615 3.003275 ACCGTAGCCATGCATAAAAATCG 59.997 43.478 0.00 0.73 0.00 3.34
3520 3616 4.568152 ACCGTAGCCATGCATAAAAATC 57.432 40.909 0.00 0.00 0.00 2.17
3521 3617 7.229707 TGTTATACCGTAGCCATGCATAAAAAT 59.770 33.333 0.00 0.00 0.00 1.82
3522 3618 6.542735 TGTTATACCGTAGCCATGCATAAAAA 59.457 34.615 0.00 0.00 0.00 1.94
3523 3619 6.056236 TGTTATACCGTAGCCATGCATAAAA 58.944 36.000 0.00 0.00 0.00 1.52
3524 3620 5.612351 TGTTATACCGTAGCCATGCATAAA 58.388 37.500 0.00 0.00 0.00 1.40
3525 3621 5.216614 TGTTATACCGTAGCCATGCATAA 57.783 39.130 0.00 0.00 0.00 1.90
3526 3622 4.875561 TGTTATACCGTAGCCATGCATA 57.124 40.909 0.00 0.00 0.00 3.14
3527 3623 3.762407 TGTTATACCGTAGCCATGCAT 57.238 42.857 0.00 0.00 0.00 3.96
3528 3624 3.199677 GTTGTTATACCGTAGCCATGCA 58.800 45.455 0.00 0.00 0.00 3.96
3529 3625 2.546789 GGTTGTTATACCGTAGCCATGC 59.453 50.000 0.00 0.00 0.00 4.06
3530 3626 4.056050 GAGGTTGTTATACCGTAGCCATG 58.944 47.826 0.00 0.00 43.21 3.66
3531 3627 3.707611 TGAGGTTGTTATACCGTAGCCAT 59.292 43.478 0.00 0.00 43.21 4.40
3532 3628 3.098377 TGAGGTTGTTATACCGTAGCCA 58.902 45.455 0.00 0.00 43.21 4.75
3533 3629 3.119029 TGTGAGGTTGTTATACCGTAGCC 60.119 47.826 0.00 0.00 43.21 3.93
3534 3630 4.114058 TGTGAGGTTGTTATACCGTAGC 57.886 45.455 0.00 0.00 43.21 3.58
3535 3631 5.163488 TGGATGTGAGGTTGTTATACCGTAG 60.163 44.000 0.00 0.00 43.21 3.51
3536 3632 4.710865 TGGATGTGAGGTTGTTATACCGTA 59.289 41.667 0.00 0.00 43.21 4.02
3537 3633 3.516300 TGGATGTGAGGTTGTTATACCGT 59.484 43.478 0.00 0.00 43.21 4.83
3538 3634 4.131649 TGGATGTGAGGTTGTTATACCG 57.868 45.455 0.00 0.00 43.21 4.02
3539 3635 5.250200 TGTTGGATGTGAGGTTGTTATACC 58.750 41.667 0.00 0.00 38.53 2.73
3540 3636 6.811253 TTGTTGGATGTGAGGTTGTTATAC 57.189 37.500 0.00 0.00 0.00 1.47
3541 3637 9.521841 TTTATTGTTGGATGTGAGGTTGTTATA 57.478 29.630 0.00 0.00 0.00 0.98
3542 3638 8.415950 TTTATTGTTGGATGTGAGGTTGTTAT 57.584 30.769 0.00 0.00 0.00 1.89
3543 3639 7.523052 GCTTTATTGTTGGATGTGAGGTTGTTA 60.523 37.037 0.00 0.00 0.00 2.41
3544 3640 6.723298 TTTATTGTTGGATGTGAGGTTGTT 57.277 33.333 0.00 0.00 0.00 2.83
3545 3641 5.278957 GCTTTATTGTTGGATGTGAGGTTGT 60.279 40.000 0.00 0.00 0.00 3.32
3546 3642 5.163513 GCTTTATTGTTGGATGTGAGGTTG 58.836 41.667 0.00 0.00 0.00 3.77
3547 3643 4.220602 GGCTTTATTGTTGGATGTGAGGTT 59.779 41.667 0.00 0.00 0.00 3.50
3548 3644 3.763897 GGCTTTATTGTTGGATGTGAGGT 59.236 43.478 0.00 0.00 0.00 3.85
3549 3645 3.763360 TGGCTTTATTGTTGGATGTGAGG 59.237 43.478 0.00 0.00 0.00 3.86
3550 3646 5.389859 TTGGCTTTATTGTTGGATGTGAG 57.610 39.130 0.00 0.00 0.00 3.51
3551 3647 5.999205 ATTGGCTTTATTGTTGGATGTGA 57.001 34.783 0.00 0.00 0.00 3.58
3552 3648 7.437793 AAAATTGGCTTTATTGTTGGATGTG 57.562 32.000 0.00 0.00 0.00 3.21
3553 3649 9.566432 TTTAAAATTGGCTTTATTGTTGGATGT 57.434 25.926 0.00 0.00 0.00 3.06
3560 3656 9.791801 ACCAGATTTTAAAATTGGCTTTATTGT 57.208 25.926 25.76 12.42 33.61 2.71
3562 3658 9.150348 CGACCAGATTTTAAAATTGGCTTTATT 57.850 29.630 25.76 14.83 33.61 1.40
3563 3659 7.277760 GCGACCAGATTTTAAAATTGGCTTTAT 59.722 33.333 25.76 15.27 33.61 1.40
3564 3660 6.588373 GCGACCAGATTTTAAAATTGGCTTTA 59.412 34.615 25.76 0.00 33.61 1.85
3565 3661 5.408299 GCGACCAGATTTTAAAATTGGCTTT 59.592 36.000 25.76 15.72 33.61 3.51
3566 3662 4.929211 GCGACCAGATTTTAAAATTGGCTT 59.071 37.500 25.76 16.16 33.61 4.35
3567 3663 4.494484 GCGACCAGATTTTAAAATTGGCT 58.506 39.130 25.76 18.60 33.61 4.75
3568 3664 3.616821 GGCGACCAGATTTTAAAATTGGC 59.383 43.478 25.76 18.12 33.61 4.52
3569 3665 3.857093 CGGCGACCAGATTTTAAAATTGG 59.143 43.478 24.98 24.98 35.04 3.16
3570 3666 3.857093 CCGGCGACCAGATTTTAAAATTG 59.143 43.478 14.45 13.22 0.00 2.32
3571 3667 3.674955 GCCGGCGACCAGATTTTAAAATT 60.675 43.478 12.58 0.00 0.00 1.82
3572 3668 2.159296 GCCGGCGACCAGATTTTAAAAT 60.159 45.455 12.58 13.24 0.00 1.82
3573 3669 1.200484 GCCGGCGACCAGATTTTAAAA 59.800 47.619 12.58 2.51 0.00 1.52
3574 3670 0.806241 GCCGGCGACCAGATTTTAAA 59.194 50.000 12.58 0.00 0.00 1.52
3575 3671 1.363145 CGCCGGCGACCAGATTTTAA 61.363 55.000 44.86 0.00 42.83 1.52
3576 3672 1.812093 CGCCGGCGACCAGATTTTA 60.812 57.895 44.86 0.00 42.83 1.52
3577 3673 3.124921 CGCCGGCGACCAGATTTT 61.125 61.111 44.86 0.00 42.83 1.82
3590 3686 3.499737 GAGATGGGTTGCACGCCG 61.500 66.667 0.00 0.00 0.00 6.46
3591 3687 3.499737 CGAGATGGGTTGCACGCC 61.500 66.667 0.00 0.00 0.00 5.68
3592 3688 2.740714 GACGAGATGGGTTGCACGC 61.741 63.158 0.00 0.00 0.00 5.34
3593 3689 2.444624 CGACGAGATGGGTTGCACG 61.445 63.158 0.00 0.00 0.00 5.34
3594 3690 2.100631 CCGACGAGATGGGTTGCAC 61.101 63.158 0.00 0.00 0.00 4.57
3595 3691 2.264480 CCGACGAGATGGGTTGCA 59.736 61.111 0.00 0.00 0.00 4.08
3596 3692 2.511600 CCCGACGAGATGGGTTGC 60.512 66.667 0.00 0.00 40.76 4.17
3597 3693 1.153628 GTCCCGACGAGATGGGTTG 60.154 63.158 0.00 0.00 46.13 3.77
3598 3694 1.305046 AGTCCCGACGAGATGGGTT 60.305 57.895 0.00 0.00 46.13 4.11
3599 3695 1.753463 GAGTCCCGACGAGATGGGT 60.753 63.158 0.00 0.00 46.13 4.51
3601 3697 1.433879 GTGAGTCCCGACGAGATGG 59.566 63.158 0.00 0.00 36.20 3.51
3602 3698 1.313091 TGGTGAGTCCCGACGAGATG 61.313 60.000 0.00 0.00 36.20 2.90
3603 3699 1.001269 TGGTGAGTCCCGACGAGAT 60.001 57.895 0.00 0.00 36.20 2.75
3604 3700 1.674651 CTGGTGAGTCCCGACGAGA 60.675 63.158 0.00 0.00 36.20 4.04
3605 3701 1.032657 ATCTGGTGAGTCCCGACGAG 61.033 60.000 0.00 0.00 32.47 4.18
3606 3702 0.611062 AATCTGGTGAGTCCCGACGA 60.611 55.000 0.00 0.00 32.47 4.20
3607 3703 0.246635 AAATCTGGTGAGTCCCGACG 59.753 55.000 0.00 0.00 32.47 5.12
3608 3704 2.474410 AAAATCTGGTGAGTCCCGAC 57.526 50.000 0.00 0.00 32.47 4.79
3609 3705 4.679639 CGAATAAAATCTGGTGAGTCCCGA 60.680 45.833 0.00 0.00 34.11 5.14
3610 3706 3.555956 CGAATAAAATCTGGTGAGTCCCG 59.444 47.826 0.00 0.00 34.77 5.14
3611 3707 4.514401 ACGAATAAAATCTGGTGAGTCCC 58.486 43.478 0.00 0.00 34.77 4.46
3612 3708 4.267928 CGACGAATAAAATCTGGTGAGTCC 59.732 45.833 0.00 0.00 0.00 3.85
3613 3709 4.267928 CCGACGAATAAAATCTGGTGAGTC 59.732 45.833 0.00 0.00 0.00 3.36
3614 3710 4.181578 CCGACGAATAAAATCTGGTGAGT 58.818 43.478 0.00 0.00 0.00 3.41
3615 3711 3.001330 GCCGACGAATAAAATCTGGTGAG 59.999 47.826 0.00 0.00 0.00 3.51
3616 3712 2.933906 GCCGACGAATAAAATCTGGTGA 59.066 45.455 0.00 0.00 0.00 4.02
3617 3713 2.031683 GGCCGACGAATAAAATCTGGTG 59.968 50.000 0.00 0.00 0.00 4.17
3618 3714 2.285977 GGCCGACGAATAAAATCTGGT 58.714 47.619 0.00 0.00 0.00 4.00
3636 3732 1.302192 TATGGATTTAGGCGGCGGC 60.302 57.895 27.24 27.24 38.90 6.53
3637 3733 0.953960 GGTATGGATTTAGGCGGCGG 60.954 60.000 9.78 0.00 0.00 6.13
3638 3734 0.953960 GGGTATGGATTTAGGCGGCG 60.954 60.000 0.51 0.51 0.00 6.46
3639 3735 0.953960 CGGGTATGGATTTAGGCGGC 60.954 60.000 0.00 0.00 0.00 6.53
3640 3736 0.682852 TCGGGTATGGATTTAGGCGG 59.317 55.000 0.00 0.00 0.00 6.13
3641 3737 2.742053 CAATCGGGTATGGATTTAGGCG 59.258 50.000 0.00 0.00 31.98 5.52
3642 3738 3.081804 CCAATCGGGTATGGATTTAGGC 58.918 50.000 0.00 0.00 39.12 3.93
3643 3739 4.634012 TCCAATCGGGTATGGATTTAGG 57.366 45.455 0.00 0.00 40.74 2.69
3650 3746 1.977854 TCCAGATCCAATCGGGTATGG 59.022 52.381 0.00 0.00 43.88 2.74
3651 3747 2.613977 GCTCCAGATCCAATCGGGTATG 60.614 54.545 6.10 0.00 43.88 2.39
3652 3748 1.625818 GCTCCAGATCCAATCGGGTAT 59.374 52.381 6.10 0.00 43.88 2.73
3653 3749 1.048601 GCTCCAGATCCAATCGGGTA 58.951 55.000 6.10 0.00 43.88 3.69
3654 3750 0.982852 TGCTCCAGATCCAATCGGGT 60.983 55.000 6.10 0.00 43.88 5.28
3655 3751 0.399454 ATGCTCCAGATCCAATCGGG 59.601 55.000 0.26 0.26 44.69 5.14
3656 3752 1.520494 CATGCTCCAGATCCAATCGG 58.480 55.000 0.00 0.00 0.00 4.18
3657 3753 1.071228 TCCATGCTCCAGATCCAATCG 59.929 52.381 0.00 0.00 0.00 3.34
3658 3754 2.945080 TCCATGCTCCAGATCCAATC 57.055 50.000 0.00 0.00 0.00 2.67
3659 3755 3.156288 CATCCATGCTCCAGATCCAAT 57.844 47.619 0.00 0.00 0.00 3.16
3660 3756 2.651382 CATCCATGCTCCAGATCCAA 57.349 50.000 0.00 0.00 0.00 3.53
3673 3769 5.573380 ACCTTGTAGTATCATGCATCCAT 57.427 39.130 0.00 0.00 0.00 3.41
3674 3770 5.602561 AGTACCTTGTAGTATCATGCATCCA 59.397 40.000 0.00 0.00 0.00 3.41
3675 3771 6.102897 AGTACCTTGTAGTATCATGCATCC 57.897 41.667 0.00 0.00 0.00 3.51
3676 3772 6.749139 TGAGTACCTTGTAGTATCATGCATC 58.251 40.000 0.00 0.00 0.00 3.91
3677 3773 6.731292 TGAGTACCTTGTAGTATCATGCAT 57.269 37.500 0.00 0.00 0.00 3.96
3678 3774 6.731292 ATGAGTACCTTGTAGTATCATGCA 57.269 37.500 0.00 0.00 0.00 3.96
3679 3775 7.383572 CAGAATGAGTACCTTGTAGTATCATGC 59.616 40.741 0.00 0.00 39.69 4.06
3680 3776 7.869937 CCAGAATGAGTACCTTGTAGTATCATG 59.130 40.741 0.00 0.00 39.69 3.07
3681 3777 7.015682 CCCAGAATGAGTACCTTGTAGTATCAT 59.984 40.741 0.00 0.00 39.69 2.45
3682 3778 6.323996 CCCAGAATGAGTACCTTGTAGTATCA 59.676 42.308 0.00 0.00 39.69 2.15
3683 3779 6.550108 TCCCAGAATGAGTACCTTGTAGTATC 59.450 42.308 0.00 0.00 39.69 2.24
3684 3780 6.324254 GTCCCAGAATGAGTACCTTGTAGTAT 59.676 42.308 0.00 0.00 39.69 2.12
3685 3781 5.655532 GTCCCAGAATGAGTACCTTGTAGTA 59.344 44.000 0.00 0.00 39.69 1.82
3686 3782 4.466726 GTCCCAGAATGAGTACCTTGTAGT 59.533 45.833 0.00 0.00 39.69 2.73
3687 3783 4.440250 CGTCCCAGAATGAGTACCTTGTAG 60.440 50.000 0.00 0.00 39.69 2.74
3688 3784 3.446161 CGTCCCAGAATGAGTACCTTGTA 59.554 47.826 0.00 0.00 39.69 2.41
3689 3785 2.233922 CGTCCCAGAATGAGTACCTTGT 59.766 50.000 0.00 0.00 39.69 3.16
3690 3786 2.418746 CCGTCCCAGAATGAGTACCTTG 60.419 54.545 0.00 0.00 39.69 3.61
3691 3787 1.831736 CCGTCCCAGAATGAGTACCTT 59.168 52.381 0.00 0.00 39.69 3.50
3692 3788 1.486211 CCGTCCCAGAATGAGTACCT 58.514 55.000 0.00 0.00 39.69 3.08
3693 3789 0.464452 CCCGTCCCAGAATGAGTACC 59.536 60.000 0.00 0.00 39.69 3.34
3694 3790 1.481871 TCCCGTCCCAGAATGAGTAC 58.518 55.000 0.00 0.00 39.69 2.73
3695 3791 2.317040 GATCCCGTCCCAGAATGAGTA 58.683 52.381 0.00 0.00 39.69 2.59
3696 3792 1.123928 GATCCCGTCCCAGAATGAGT 58.876 55.000 0.00 0.00 39.69 3.41
3697 3793 0.032678 CGATCCCGTCCCAGAATGAG 59.967 60.000 0.00 0.00 39.69 2.90
3698 3794 1.399744 CCGATCCCGTCCCAGAATGA 61.400 60.000 0.00 0.00 39.69 2.57
3699 3795 1.069765 CCGATCCCGTCCCAGAATG 59.930 63.158 0.00 0.00 0.00 2.67
3700 3796 1.075525 TCCGATCCCGTCCCAGAAT 60.076 57.895 0.00 0.00 0.00 2.40
3701 3797 1.756950 CTCCGATCCCGTCCCAGAA 60.757 63.158 0.00 0.00 0.00 3.02
3702 3798 2.123854 CTCCGATCCCGTCCCAGA 60.124 66.667 0.00 0.00 0.00 3.86
3703 3799 2.123854 TCTCCGATCCCGTCCCAG 60.124 66.667 0.00 0.00 0.00 4.45
3704 3800 2.441532 GTCTCCGATCCCGTCCCA 60.442 66.667 0.00 0.00 0.00 4.37
3705 3801 2.441532 TGTCTCCGATCCCGTCCC 60.442 66.667 0.00 0.00 0.00 4.46
3706 3802 1.321074 AAGTGTCTCCGATCCCGTCC 61.321 60.000 0.00 0.00 0.00 4.79
3707 3803 0.531200 AAAGTGTCTCCGATCCCGTC 59.469 55.000 0.00 0.00 0.00 4.79
3708 3804 2.667348 AAAGTGTCTCCGATCCCGT 58.333 52.632 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.