Multiple sequence alignment - TraesCS5A01G211200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G211200 chr5A 100.000 2686 0 0 1 2686 426708187 426710872 0.000000e+00 4961.0
1 TraesCS5A01G211200 chr5B 89.766 1710 82 42 394 2084 383209854 383208219 0.000000e+00 2102.0
2 TraesCS5A01G211200 chr5B 87.288 590 34 20 2118 2686 383208150 383207581 1.050000e-178 636.0
3 TraesCS5A01G211200 chr5D 91.588 1272 52 22 838 2084 330121398 330120157 0.000000e+00 1705.0
4 TraesCS5A01G211200 chr5D 91.051 447 25 13 2244 2686 330119872 330119437 8.280000e-165 590.0
5 TraesCS5A01G211200 chr5D 87.226 501 44 9 359 847 330122975 330122483 1.090000e-153 553.0
6 TraesCS5A01G211200 chr5D 90.210 143 10 2 1 142 163793458 163793597 1.640000e-42 183.0
7 TraesCS5A01G211200 chr5D 89.286 140 12 3 4 142 476010341 476010204 3.560000e-39 172.0
8 TraesCS5A01G211200 chr5D 86.928 153 17 3 1 152 546011507 546011657 4.600000e-38 169.0
9 TraesCS5A01G211200 chr7D 91.608 143 9 2 1 142 37120274 37120414 7.590000e-46 195.0
10 TraesCS5A01G211200 chr7D 82.482 137 19 5 388 521 41274317 41274183 6.080000e-22 115.0
11 TraesCS5A01G211200 chr7A 90.647 139 12 1 4 141 93897195 93897057 1.640000e-42 183.0
12 TraesCS5A01G211200 chr3D 89.928 139 14 0 4 142 568184641 568184503 2.120000e-41 180.0
13 TraesCS5A01G211200 chr3D 89.583 144 9 5 1 142 604874357 604874496 7.640000e-41 178.0
14 TraesCS5A01G211200 chr1D 88.732 142 14 1 1 142 180321460 180321599 3.560000e-39 172.0
15 TraesCS5A01G211200 chr1D 88.356 146 11 4 4 147 457209325 457209466 1.280000e-38 171.0
16 TraesCS5A01G211200 chr7B 83.871 93 13 2 169 259 154365762 154365670 1.320000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G211200 chr5A 426708187 426710872 2685 False 4961.000000 4961 100.000 1 2686 1 chr5A.!!$F1 2685
1 TraesCS5A01G211200 chr5B 383207581 383209854 2273 True 1369.000000 2102 88.527 394 2686 2 chr5B.!!$R1 2292
2 TraesCS5A01G211200 chr5D 330119437 330122975 3538 True 949.333333 1705 89.955 359 2686 3 chr5D.!!$R2 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.0 13.12 2.86 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 3088 0.248289 GAAATGGGCTTGCATGCACT 59.752 50.0 25.27 7.54 37.25 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.829064 TCGCAAAGCATTTACCATATCC 57.171 40.909 0.00 0.00 35.03 2.59
22 23 4.460263 TCGCAAAGCATTTACCATATCCT 58.540 39.130 0.00 0.00 35.03 3.24
23 24 4.515191 TCGCAAAGCATTTACCATATCCTC 59.485 41.667 0.00 0.00 35.03 3.71
24 25 4.275689 CGCAAAGCATTTACCATATCCTCA 59.724 41.667 0.00 0.00 35.03 3.86
25 26 5.523369 GCAAAGCATTTACCATATCCTCAC 58.477 41.667 0.00 0.00 35.03 3.51
26 27 5.300286 GCAAAGCATTTACCATATCCTCACT 59.700 40.000 0.00 0.00 35.03 3.41
27 28 6.183360 GCAAAGCATTTACCATATCCTCACTT 60.183 38.462 0.00 0.00 35.03 3.16
28 29 6.949352 AAGCATTTACCATATCCTCACTTG 57.051 37.500 0.00 0.00 0.00 3.16
29 30 6.252599 AGCATTTACCATATCCTCACTTGA 57.747 37.500 0.00 0.00 0.00 3.02
30 31 6.662755 AGCATTTACCATATCCTCACTTGAA 58.337 36.000 0.00 0.00 0.00 2.69
31 32 7.118723 AGCATTTACCATATCCTCACTTGAAA 58.881 34.615 0.00 0.00 0.00 2.69
32 33 7.781693 AGCATTTACCATATCCTCACTTGAAAT 59.218 33.333 0.00 0.00 0.00 2.17
33 34 8.078596 GCATTTACCATATCCTCACTTGAAATC 58.921 37.037 0.00 0.00 0.00 2.17
34 35 9.123902 CATTTACCATATCCTCACTTGAAATCA 57.876 33.333 0.00 0.00 0.00 2.57
35 36 8.737168 TTTACCATATCCTCACTTGAAATCAG 57.263 34.615 0.00 0.00 0.00 2.90
36 37 5.688807 ACCATATCCTCACTTGAAATCAGG 58.311 41.667 0.00 0.00 0.00 3.86
37 38 5.068636 CCATATCCTCACTTGAAATCAGGG 58.931 45.833 0.00 0.00 0.00 4.45
38 39 3.659183 ATCCTCACTTGAAATCAGGGG 57.341 47.619 0.00 0.00 0.00 4.79
39 40 2.631384 TCCTCACTTGAAATCAGGGGA 58.369 47.619 0.00 0.00 34.09 4.81
40 41 2.986019 TCCTCACTTGAAATCAGGGGAA 59.014 45.455 0.00 0.00 34.87 3.97
41 42 3.009473 TCCTCACTTGAAATCAGGGGAAG 59.991 47.826 0.00 0.00 34.87 3.46
42 43 3.350833 CTCACTTGAAATCAGGGGAAGG 58.649 50.000 0.00 0.00 34.87 3.46
43 44 2.986019 TCACTTGAAATCAGGGGAAGGA 59.014 45.455 0.00 0.00 32.12 3.36
44 45 3.009473 TCACTTGAAATCAGGGGAAGGAG 59.991 47.826 0.00 0.00 32.12 3.69
45 46 3.009473 CACTTGAAATCAGGGGAAGGAGA 59.991 47.826 0.00 0.00 0.00 3.71
46 47 3.265479 ACTTGAAATCAGGGGAAGGAGAG 59.735 47.826 0.00 0.00 0.00 3.20
47 48 3.205519 TGAAATCAGGGGAAGGAGAGA 57.794 47.619 0.00 0.00 0.00 3.10
48 49 3.740780 TGAAATCAGGGGAAGGAGAGAT 58.259 45.455 0.00 0.00 0.00 2.75
49 50 4.114597 TGAAATCAGGGGAAGGAGAGATT 58.885 43.478 0.00 0.00 0.00 2.40
50 51 5.288687 TGAAATCAGGGGAAGGAGAGATTA 58.711 41.667 0.00 0.00 0.00 1.75
51 52 5.731187 TGAAATCAGGGGAAGGAGAGATTAA 59.269 40.000 0.00 0.00 0.00 1.40
52 53 6.217487 TGAAATCAGGGGAAGGAGAGATTAAA 59.783 38.462 0.00 0.00 0.00 1.52
53 54 6.855375 AATCAGGGGAAGGAGAGATTAAAT 57.145 37.500 0.00 0.00 0.00 1.40
54 55 5.636903 TCAGGGGAAGGAGAGATTAAATG 57.363 43.478 0.00 0.00 0.00 2.32
55 56 4.140536 CAGGGGAAGGAGAGATTAAATGC 58.859 47.826 0.00 0.00 0.00 3.56
56 57 4.050757 AGGGGAAGGAGAGATTAAATGCT 58.949 43.478 0.00 0.00 0.00 3.79
57 58 4.480166 AGGGGAAGGAGAGATTAAATGCTT 59.520 41.667 0.00 0.00 0.00 3.91
58 59 5.043806 AGGGGAAGGAGAGATTAAATGCTTT 60.044 40.000 0.00 0.00 0.00 3.51
59 60 6.160459 AGGGGAAGGAGAGATTAAATGCTTTA 59.840 38.462 0.00 0.00 0.00 1.85
60 61 7.007116 GGGGAAGGAGAGATTAAATGCTTTAT 58.993 38.462 0.00 0.00 0.00 1.40
61 62 7.040132 GGGGAAGGAGAGATTAAATGCTTTATG 60.040 40.741 0.00 0.00 0.00 1.90
62 63 7.721399 GGGAAGGAGAGATTAAATGCTTTATGA 59.279 37.037 0.00 0.00 0.00 2.15
63 64 9.294614 GGAAGGAGAGATTAAATGCTTTATGAT 57.705 33.333 0.00 0.00 0.00 2.45
76 77 8.597662 AATGCTTTATGATTTATGAATGCCAC 57.402 30.769 0.00 0.00 0.00 5.01
77 78 6.207928 TGCTTTATGATTTATGAATGCCACG 58.792 36.000 0.00 0.00 0.00 4.94
78 79 6.183360 TGCTTTATGATTTATGAATGCCACGT 60.183 34.615 0.00 0.00 0.00 4.49
79 80 6.142798 GCTTTATGATTTATGAATGCCACGTG 59.857 38.462 9.08 9.08 0.00 4.49
80 81 6.691754 TTATGATTTATGAATGCCACGTGT 57.308 33.333 15.65 0.00 0.00 4.49
81 82 4.614555 TGATTTATGAATGCCACGTGTC 57.385 40.909 15.65 0.98 0.00 3.67
82 83 4.006319 TGATTTATGAATGCCACGTGTCA 58.994 39.130 15.65 8.63 0.00 3.58
83 84 4.639755 TGATTTATGAATGCCACGTGTCAT 59.360 37.500 19.43 19.43 35.05 3.06
84 85 4.614555 TTTATGAATGCCACGTGTCATC 57.385 40.909 19.16 11.02 32.99 2.92
85 86 1.382522 ATGAATGCCACGTGTCATCC 58.617 50.000 13.12 0.00 0.00 3.51
86 87 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
87 88 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
88 89 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
89 90 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
90 91 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
91 92 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
92 93 0.462581 CCACGTGTCATCCATCAGGG 60.463 60.000 15.65 0.00 34.83 4.45
93 94 0.250234 CACGTGTCATCCATCAGGGT 59.750 55.000 7.58 0.00 38.11 4.34
101 102 2.557555 ATCCATCAGGGTGAGTCTCA 57.442 50.000 0.00 0.00 38.11 3.27
102 103 1.561643 TCCATCAGGGTGAGTCTCAC 58.438 55.000 22.61 22.61 46.23 3.51
111 112 2.371910 GTGAGTCTCACCTGCTAACC 57.628 55.000 20.54 0.00 41.37 2.85
112 113 1.066787 GTGAGTCTCACCTGCTAACCC 60.067 57.143 20.54 0.00 41.37 4.11
113 114 0.173708 GAGTCTCACCTGCTAACCCG 59.826 60.000 0.00 0.00 0.00 5.28
114 115 0.542232 AGTCTCACCTGCTAACCCGT 60.542 55.000 0.00 0.00 0.00 5.28
115 116 0.389948 GTCTCACCTGCTAACCCGTG 60.390 60.000 0.00 0.00 0.00 4.94
116 117 0.541063 TCTCACCTGCTAACCCGTGA 60.541 55.000 0.00 0.00 34.26 4.35
117 118 0.108615 CTCACCTGCTAACCCGTGAG 60.109 60.000 2.01 2.01 44.38 3.51
118 119 0.541063 TCACCTGCTAACCCGTGAGA 60.541 55.000 0.00 0.00 31.80 3.27
119 120 0.389948 CACCTGCTAACCCGTGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
120 121 1.218316 CCTGCTAACCCGTGAGACC 59.782 63.158 0.00 0.00 0.00 3.85
121 122 1.258445 CCTGCTAACCCGTGAGACCT 61.258 60.000 0.00 0.00 0.00 3.85
122 123 0.108615 CTGCTAACCCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
123 124 1.218316 GCTAACCCGTGAGACCTGG 59.782 63.158 0.00 0.00 0.00 4.45
124 125 1.542187 GCTAACCCGTGAGACCTGGT 61.542 60.000 0.00 0.00 0.00 4.00
125 126 0.531200 CTAACCCGTGAGACCTGGTC 59.469 60.000 19.20 19.20 0.00 4.02
126 127 0.113776 TAACCCGTGAGACCTGGTCT 59.886 55.000 28.70 28.70 46.42 3.85
168 169 4.587056 CTGCCAAGGAATAGGGGC 57.413 61.111 0.00 0.00 46.58 5.80
172 173 2.206576 GCCAAGGAATAGGGGCATAG 57.793 55.000 0.00 0.00 45.70 2.23
173 174 1.425448 GCCAAGGAATAGGGGCATAGT 59.575 52.381 0.00 0.00 45.70 2.12
174 175 2.642807 GCCAAGGAATAGGGGCATAGTA 59.357 50.000 0.00 0.00 45.70 1.82
175 176 3.073946 GCCAAGGAATAGGGGCATAGTAA 59.926 47.826 0.00 0.00 45.70 2.24
176 177 4.263949 GCCAAGGAATAGGGGCATAGTAAT 60.264 45.833 0.00 0.00 45.70 1.89
177 178 5.752030 GCCAAGGAATAGGGGCATAGTAATT 60.752 44.000 0.00 0.00 45.70 1.40
178 179 6.314917 CCAAGGAATAGGGGCATAGTAATTT 58.685 40.000 0.00 0.00 0.00 1.82
179 180 6.782494 CCAAGGAATAGGGGCATAGTAATTTT 59.218 38.462 0.00 0.00 0.00 1.82
180 181 7.947890 CCAAGGAATAGGGGCATAGTAATTTTA 59.052 37.037 0.00 0.00 0.00 1.52
181 182 9.362151 CAAGGAATAGGGGCATAGTAATTTTAA 57.638 33.333 0.00 0.00 0.00 1.52
182 183 9.588096 AAGGAATAGGGGCATAGTAATTTTAAG 57.412 33.333 0.00 0.00 0.00 1.85
183 184 8.170730 AGGAATAGGGGCATAGTAATTTTAAGG 58.829 37.037 0.00 0.00 0.00 2.69
184 185 7.948447 GGAATAGGGGCATAGTAATTTTAAGGT 59.052 37.037 0.00 0.00 0.00 3.50
185 186 9.363401 GAATAGGGGCATAGTAATTTTAAGGTT 57.637 33.333 0.00 0.00 0.00 3.50
186 187 8.935614 ATAGGGGCATAGTAATTTTAAGGTTC 57.064 34.615 0.00 0.00 0.00 3.62
187 188 6.737608 AGGGGCATAGTAATTTTAAGGTTCA 58.262 36.000 0.00 0.00 0.00 3.18
188 189 6.833933 AGGGGCATAGTAATTTTAAGGTTCAG 59.166 38.462 0.00 0.00 0.00 3.02
189 190 6.605995 GGGGCATAGTAATTTTAAGGTTCAGT 59.394 38.462 0.00 0.00 0.00 3.41
190 191 7.123697 GGGGCATAGTAATTTTAAGGTTCAGTT 59.876 37.037 0.00 0.00 0.00 3.16
191 192 7.973944 GGGCATAGTAATTTTAAGGTTCAGTTG 59.026 37.037 0.00 0.00 0.00 3.16
192 193 8.520351 GGCATAGTAATTTTAAGGTTCAGTTGT 58.480 33.333 0.00 0.00 0.00 3.32
193 194 9.908152 GCATAGTAATTTTAAGGTTCAGTTGTT 57.092 29.630 0.00 0.00 0.00 2.83
204 205 4.789095 GTTCAGTTGTTGAAGCTTACGA 57.211 40.909 0.00 0.00 46.09 3.43
205 206 5.344207 GTTCAGTTGTTGAAGCTTACGAT 57.656 39.130 0.00 0.00 46.09 3.73
206 207 5.748592 GTTCAGTTGTTGAAGCTTACGATT 58.251 37.500 0.00 0.00 46.09 3.34
207 208 6.199393 GTTCAGTTGTTGAAGCTTACGATTT 58.801 36.000 0.00 0.00 46.09 2.17
208 209 6.371809 TCAGTTGTTGAAGCTTACGATTTT 57.628 33.333 0.00 0.00 31.34 1.82
209 210 6.791303 TCAGTTGTTGAAGCTTACGATTTTT 58.209 32.000 0.00 0.00 31.34 1.94
210 211 6.910433 TCAGTTGTTGAAGCTTACGATTTTTC 59.090 34.615 0.00 0.00 31.34 2.29
211 212 6.690957 CAGTTGTTGAAGCTTACGATTTTTCA 59.309 34.615 0.00 0.00 0.00 2.69
212 213 7.379529 CAGTTGTTGAAGCTTACGATTTTTCAT 59.620 33.333 0.00 0.00 0.00 2.57
213 214 7.591426 AGTTGTTGAAGCTTACGATTTTTCATC 59.409 33.333 0.00 0.00 0.00 2.92
214 215 7.202016 TGTTGAAGCTTACGATTTTTCATCT 57.798 32.000 0.00 0.00 0.00 2.90
215 216 7.077605 TGTTGAAGCTTACGATTTTTCATCTG 58.922 34.615 0.00 0.00 0.00 2.90
216 217 7.041440 TGTTGAAGCTTACGATTTTTCATCTGA 60.041 33.333 0.00 0.00 0.00 3.27
217 218 7.433708 TGAAGCTTACGATTTTTCATCTGAA 57.566 32.000 0.00 0.00 0.00 3.02
218 219 7.870826 TGAAGCTTACGATTTTTCATCTGAAA 58.129 30.769 0.00 1.28 41.77 2.69
219 220 7.803189 TGAAGCTTACGATTTTTCATCTGAAAC 59.197 33.333 0.00 0.00 43.01 2.78
220 221 7.440523 AGCTTACGATTTTTCATCTGAAACT 57.559 32.000 4.89 0.00 43.01 2.66
221 222 7.875971 AGCTTACGATTTTTCATCTGAAACTT 58.124 30.769 4.89 0.00 43.01 2.66
222 223 7.805071 AGCTTACGATTTTTCATCTGAAACTTG 59.195 33.333 4.89 3.37 43.01 3.16
223 224 7.409767 GCTTACGATTTTTCATCTGAAACTTGC 60.410 37.037 4.89 0.00 43.01 4.01
224 225 5.830912 ACGATTTTTCATCTGAAACTTGCA 58.169 33.333 4.89 0.00 43.01 4.08
225 226 6.272318 ACGATTTTTCATCTGAAACTTGCAA 58.728 32.000 4.89 0.00 43.01 4.08
226 227 6.925165 ACGATTTTTCATCTGAAACTTGCAAT 59.075 30.769 0.00 2.78 43.01 3.56
227 228 7.439056 ACGATTTTTCATCTGAAACTTGCAATT 59.561 29.630 0.00 0.00 43.01 2.32
228 229 8.277713 CGATTTTTCATCTGAAACTTGCAATTT 58.722 29.630 0.00 0.00 43.01 1.82
229 230 9.940166 GATTTTTCATCTGAAACTTGCAATTTT 57.060 25.926 13.93 13.93 43.01 1.82
230 231 9.724839 ATTTTTCATCTGAAACTTGCAATTTTG 57.275 25.926 18.28 6.42 43.01 2.44
231 232 7.846644 TTTCATCTGAAACTTGCAATTTTGT 57.153 28.000 18.28 1.24 38.94 2.83
232 233 6.831727 TCATCTGAAACTTGCAATTTTGTG 57.168 33.333 18.28 10.88 0.00 3.33
233 234 6.339730 TCATCTGAAACTTGCAATTTTGTGT 58.660 32.000 18.28 0.00 0.00 3.72
234 235 6.817641 TCATCTGAAACTTGCAATTTTGTGTT 59.182 30.769 18.28 6.59 0.00 3.32
235 236 7.333921 TCATCTGAAACTTGCAATTTTGTGTTT 59.666 29.630 18.28 14.33 34.10 2.83
236 237 6.829703 TCTGAAACTTGCAATTTTGTGTTTG 58.170 32.000 18.28 5.42 32.81 2.93
237 238 6.426328 TCTGAAACTTGCAATTTTGTGTTTGT 59.574 30.769 18.28 0.00 32.81 2.83
238 239 6.963796 TGAAACTTGCAATTTTGTGTTTGTT 58.036 28.000 18.28 3.78 32.81 2.83
239 240 7.420800 TGAAACTTGCAATTTTGTGTTTGTTT 58.579 26.923 18.28 11.69 32.81 2.83
240 241 7.917505 TGAAACTTGCAATTTTGTGTTTGTTTT 59.082 25.926 18.28 0.00 32.81 2.43
241 242 8.640091 AAACTTGCAATTTTGTGTTTGTTTTT 57.360 23.077 13.36 0.00 32.12 1.94
242 243 9.736023 AAACTTGCAATTTTGTGTTTGTTTTTA 57.264 22.222 13.36 0.00 32.12 1.52
243 244 9.905171 AACTTGCAATTTTGTGTTTGTTTTTAT 57.095 22.222 0.00 0.00 0.00 1.40
244 245 9.553418 ACTTGCAATTTTGTGTTTGTTTTTATC 57.447 25.926 0.00 0.00 0.00 1.75
245 246 9.552114 CTTGCAATTTTGTGTTTGTTTTTATCA 57.448 25.926 0.00 0.00 0.00 2.15
246 247 9.897744 TTGCAATTTTGTGTTTGTTTTTATCAA 57.102 22.222 0.00 0.00 0.00 2.57
247 248 9.552114 TGCAATTTTGTGTTTGTTTTTATCAAG 57.448 25.926 0.00 0.00 0.00 3.02
248 249 9.553418 GCAATTTTGTGTTTGTTTTTATCAAGT 57.447 25.926 0.00 0.00 0.00 3.16
291 292 4.695217 TTTTTGGTTGATCGTAGGCATC 57.305 40.909 0.00 0.00 0.00 3.91
292 293 3.342377 TTTGGTTGATCGTAGGCATCA 57.658 42.857 0.00 0.00 0.00 3.07
293 294 3.342377 TTGGTTGATCGTAGGCATCAA 57.658 42.857 6.33 6.33 37.82 2.57
294 295 3.342377 TGGTTGATCGTAGGCATCAAA 57.658 42.857 10.04 0.00 40.99 2.69
295 296 3.680490 TGGTTGATCGTAGGCATCAAAA 58.320 40.909 10.04 3.12 40.99 2.44
296 297 4.269183 TGGTTGATCGTAGGCATCAAAAT 58.731 39.130 10.04 0.00 40.99 1.82
297 298 4.335315 TGGTTGATCGTAGGCATCAAAATC 59.665 41.667 10.04 6.19 40.99 2.17
298 299 4.576463 GGTTGATCGTAGGCATCAAAATCT 59.424 41.667 10.04 0.00 40.99 2.40
299 300 5.066505 GGTTGATCGTAGGCATCAAAATCTT 59.933 40.000 10.04 0.00 40.99 2.40
300 301 5.739752 TGATCGTAGGCATCAAAATCTTG 57.260 39.130 0.00 0.00 0.00 3.02
301 302 5.427378 TGATCGTAGGCATCAAAATCTTGA 58.573 37.500 0.00 0.00 45.53 3.02
313 314 5.806286 TCAAAATCTTGATTTATCGGTCGC 58.194 37.500 8.75 0.00 36.62 5.19
314 315 5.584649 TCAAAATCTTGATTTATCGGTCGCT 59.415 36.000 8.75 0.00 36.62 4.93
315 316 6.093495 TCAAAATCTTGATTTATCGGTCGCTT 59.907 34.615 8.75 0.00 36.62 4.68
316 317 5.409643 AATCTTGATTTATCGGTCGCTTG 57.590 39.130 0.00 0.00 0.00 4.01
317 318 3.857052 TCTTGATTTATCGGTCGCTTGT 58.143 40.909 0.00 0.00 0.00 3.16
318 319 5.001237 TCTTGATTTATCGGTCGCTTGTA 57.999 39.130 0.00 0.00 0.00 2.41
319 320 5.597806 TCTTGATTTATCGGTCGCTTGTAT 58.402 37.500 0.00 0.00 0.00 2.29
320 321 6.046593 TCTTGATTTATCGGTCGCTTGTATT 58.953 36.000 0.00 0.00 0.00 1.89
321 322 7.204604 TCTTGATTTATCGGTCGCTTGTATTA 58.795 34.615 0.00 0.00 0.00 0.98
322 323 7.707464 TCTTGATTTATCGGTCGCTTGTATTAA 59.293 33.333 0.00 0.00 0.00 1.40
323 324 7.402811 TGATTTATCGGTCGCTTGTATTAAG 57.597 36.000 0.00 0.00 0.00 1.85
324 325 6.982141 TGATTTATCGGTCGCTTGTATTAAGT 59.018 34.615 0.00 0.00 0.00 2.24
325 326 7.493320 TGATTTATCGGTCGCTTGTATTAAGTT 59.507 33.333 0.00 0.00 0.00 2.66
326 327 7.599630 TTTATCGGTCGCTTGTATTAAGTTT 57.400 32.000 0.00 0.00 0.00 2.66
327 328 7.599630 TTATCGGTCGCTTGTATTAAGTTTT 57.400 32.000 0.00 0.00 0.00 2.43
328 329 8.700722 TTATCGGTCGCTTGTATTAAGTTTTA 57.299 30.769 0.00 0.00 0.00 1.52
329 330 7.599630 ATCGGTCGCTTGTATTAAGTTTTAA 57.400 32.000 0.00 0.00 0.00 1.52
330 331 7.052565 TCGGTCGCTTGTATTAAGTTTTAAG 57.947 36.000 0.00 0.00 0.00 1.85
331 332 6.867816 TCGGTCGCTTGTATTAAGTTTTAAGA 59.132 34.615 0.00 0.00 0.00 2.10
332 333 7.062605 TCGGTCGCTTGTATTAAGTTTTAAGAG 59.937 37.037 0.00 0.00 0.00 2.85
333 334 7.148689 CGGTCGCTTGTATTAAGTTTTAAGAGT 60.149 37.037 0.00 0.00 0.00 3.24
334 335 8.501580 GGTCGCTTGTATTAAGTTTTAAGAGTT 58.498 33.333 0.00 0.00 0.00 3.01
335 336 9.314501 GTCGCTTGTATTAAGTTTTAAGAGTTG 57.685 33.333 0.00 0.00 0.00 3.16
336 337 9.263538 TCGCTTGTATTAAGTTTTAAGAGTTGA 57.736 29.630 0.00 0.00 0.00 3.18
337 338 9.872757 CGCTTGTATTAAGTTTTAAGAGTTGAA 57.127 29.630 0.00 0.00 0.00 2.69
380 381 6.569780 ACAAATATTATTTGAAAGTCCCGGC 58.430 36.000 27.71 0.00 33.83 6.13
383 384 2.122783 TATTTGAAAGTCCCGGCCAG 57.877 50.000 2.24 0.00 0.00 4.85
386 387 1.497309 TTGAAAGTCCCGGCCAGGAT 61.497 55.000 11.90 0.00 45.00 3.24
393 394 1.202099 TCCCGGCCAGGATAAACACA 61.202 55.000 2.59 0.00 45.00 3.72
395 396 1.540267 CCGGCCAGGATAAACACAAA 58.460 50.000 2.24 0.00 45.00 2.83
456 458 9.500785 AAAGGTTGAAAGTCTGAAAATCAAAAA 57.499 25.926 2.94 0.00 32.36 1.94
517 520 4.652131 TGCGTGGCCCAAATCCGT 62.652 61.111 0.00 0.00 0.00 4.69
521 530 1.241315 CGTGGCCCAAATCCGTTTCT 61.241 55.000 0.00 0.00 0.00 2.52
523 532 0.178975 TGGCCCAAATCCGTTTCTGT 60.179 50.000 0.00 0.00 0.00 3.41
527 536 3.462982 GCCCAAATCCGTTTCTGTTTTT 58.537 40.909 0.00 0.00 0.00 1.94
533 542 4.568152 ATCCGTTTCTGTTTTTCACTGG 57.432 40.909 0.00 0.00 0.00 4.00
549 558 1.905215 ACTGGCAGATGCACTTCTACT 59.095 47.619 23.66 0.00 44.36 2.57
550 559 2.304180 ACTGGCAGATGCACTTCTACTT 59.696 45.455 23.66 0.00 44.36 2.24
551 560 3.515502 ACTGGCAGATGCACTTCTACTTA 59.484 43.478 23.66 0.00 44.36 2.24
552 561 4.163078 ACTGGCAGATGCACTTCTACTTAT 59.837 41.667 23.66 0.00 44.36 1.73
568 577 6.387465 TCTACTTATTCACGGACAAGTTCTG 58.613 40.000 0.00 0.00 33.47 3.02
694 707 1.626654 GACATGTCACGGTCCTTGCG 61.627 60.000 21.07 0.00 0.00 4.85
853 1964 1.939082 TTCCCCTCTCCTCTCCTCCG 61.939 65.000 0.00 0.00 0.00 4.63
877 1995 2.623535 TCGGTTTTACCATCATCACCG 58.376 47.619 2.09 2.09 46.89 4.94
879 1997 2.095213 CGGTTTTACCATCATCACCGTG 59.905 50.000 0.00 0.00 41.81 4.94
880 1998 2.422127 GGTTTTACCATCATCACCGTGG 59.578 50.000 0.00 0.00 38.42 4.94
881 1999 1.745232 TTTACCATCATCACCGTGGC 58.255 50.000 0.00 0.00 36.47 5.01
882 2000 0.107410 TTACCATCATCACCGTGGCC 60.107 55.000 0.00 0.00 36.47 5.36
883 2001 2.304901 TACCATCATCACCGTGGCCG 62.305 60.000 0.00 0.00 36.47 6.13
884 2002 3.576356 CATCATCACCGTGGCCGC 61.576 66.667 6.11 6.11 0.00 6.53
979 2097 2.606378 CCCTCCGCCCCCTATATATAC 58.394 57.143 0.00 0.00 0.00 1.47
1043 2161 2.823154 CCTCTCTCTTTCCGACTGAACT 59.177 50.000 0.00 0.00 31.05 3.01
1055 2173 3.306364 CCGACTGAACTCCAAGAACATCT 60.306 47.826 0.00 0.00 0.00 2.90
1060 2178 5.070981 ACTGAACTCCAAGAACATCTTCTCA 59.929 40.000 0.00 0.00 35.52 3.27
1061 2179 6.119240 TGAACTCCAAGAACATCTTCTCAT 57.881 37.500 0.00 0.00 35.52 2.90
1063 2181 7.000472 TGAACTCCAAGAACATCTTCTCATTT 59.000 34.615 0.00 0.00 35.52 2.32
1435 2567 4.586618 CTGTTCGAGCACCTCCTG 57.413 61.111 0.00 0.00 0.00 3.86
1616 2753 7.333423 GGGGCAATTTGGTAATTCTTTCTTTAC 59.667 37.037 0.00 0.00 31.63 2.01
1692 2844 0.726827 CTGTGTGTGTGTGTGTGGAC 59.273 55.000 0.00 0.00 0.00 4.02
1731 2883 1.362768 GTTCGTGGTAATTCGGGGAC 58.637 55.000 0.00 0.00 0.00 4.46
1741 2893 0.462047 ATTCGGGGACTAGCTTTGCG 60.462 55.000 0.00 0.00 0.00 4.85
1854 3006 3.739401 TCATTTCCCCTTTTCCTCTCC 57.261 47.619 0.00 0.00 0.00 3.71
1907 3060 4.319766 GGATCAATGCATCCACGTACATTC 60.320 45.833 0.00 0.00 42.02 2.67
1920 3082 5.221362 CCACGTACATTCCCATCTGTGTATA 60.221 44.000 0.00 0.00 30.65 1.47
1921 3083 6.455647 CACGTACATTCCCATCTGTGTATAT 58.544 40.000 0.00 0.00 30.65 0.86
1922 3084 7.309560 CCACGTACATTCCCATCTGTGTATATA 60.310 40.741 0.00 0.00 30.65 0.86
1923 3085 8.251026 CACGTACATTCCCATCTGTGTATATAT 58.749 37.037 0.00 0.00 30.65 0.86
1924 3086 9.470399 ACGTACATTCCCATCTGTGTATATATA 57.530 33.333 0.00 0.00 30.65 0.86
1930 3092 9.672673 ATTCCCATCTGTGTATATATAAAGTGC 57.327 33.333 0.00 0.00 0.00 4.40
1931 3093 8.201242 TCCCATCTGTGTATATATAAAGTGCA 57.799 34.615 0.00 0.00 0.00 4.57
1932 3094 8.825774 TCCCATCTGTGTATATATAAAGTGCAT 58.174 33.333 0.00 0.00 0.00 3.96
1939 3101 7.023575 GTGTATATATAAAGTGCATGCAAGCC 58.976 38.462 24.58 10.63 0.00 4.35
2059 3224 0.109597 GCATTTTCACCAGCCGACAG 60.110 55.000 0.00 0.00 0.00 3.51
2084 3249 8.263640 AGAACTGCTACAGATAAGATGTCATTT 58.736 33.333 0.78 0.00 35.18 2.32
2085 3250 8.798859 AACTGCTACAGATAAGATGTCATTTT 57.201 30.769 0.78 0.00 35.18 1.82
2086 3251 8.798859 ACTGCTACAGATAAGATGTCATTTTT 57.201 30.769 0.78 0.00 35.18 1.94
2087 3252 8.887717 ACTGCTACAGATAAGATGTCATTTTTC 58.112 33.333 0.78 0.00 35.18 2.29
2088 3253 9.107177 CTGCTACAGATAAGATGTCATTTTTCT 57.893 33.333 0.00 0.00 32.44 2.52
2089 3254 9.453572 TGCTACAGATAAGATGTCATTTTTCTT 57.546 29.630 0.00 0.00 34.29 2.52
2093 3258 9.415544 ACAGATAAGATGTCATTTTTCTTTTGC 57.584 29.630 0.00 0.00 32.28 3.68
2094 3259 8.581263 CAGATAAGATGTCATTTTTCTTTTGCG 58.419 33.333 0.00 0.00 32.28 4.85
2095 3260 7.756722 AGATAAGATGTCATTTTTCTTTTGCGG 59.243 33.333 0.00 0.00 32.28 5.69
2096 3261 4.559153 AGATGTCATTTTTCTTTTGCGGG 58.441 39.130 0.00 0.00 0.00 6.13
2097 3262 4.280677 AGATGTCATTTTTCTTTTGCGGGA 59.719 37.500 0.00 0.00 0.00 5.14
2100 3265 4.568760 TGTCATTTTTCTTTTGCGGGAAAC 59.431 37.500 0.00 0.00 32.20 2.78
2102 3267 4.808364 TCATTTTTCTTTTGCGGGAAACAG 59.192 37.500 0.00 0.00 32.20 3.16
2103 3268 4.457834 TTTTTCTTTTGCGGGAAACAGA 57.542 36.364 0.00 0.00 32.20 3.41
2104 3269 4.664150 TTTTCTTTTGCGGGAAACAGAT 57.336 36.364 0.00 0.00 32.20 2.90
2105 3270 3.915437 TTCTTTTGCGGGAAACAGATC 57.085 42.857 0.00 0.00 0.00 2.75
2106 3271 2.857483 TCTTTTGCGGGAAACAGATCA 58.143 42.857 0.00 0.00 0.00 2.92
2107 3272 2.813754 TCTTTTGCGGGAAACAGATCAG 59.186 45.455 0.00 0.00 0.00 2.90
2115 3316 4.002982 CGGGAAACAGATCAGATGTCAAA 58.997 43.478 0.00 0.00 0.00 2.69
2130 3331 5.824624 AGATGTCAAAACAGACTTGATGTGT 59.175 36.000 0.00 0.00 39.20 3.72
2131 3332 6.992123 AGATGTCAAAACAGACTTGATGTGTA 59.008 34.615 0.00 0.00 39.20 2.90
2132 3333 6.603237 TGTCAAAACAGACTTGATGTGTAG 57.397 37.500 0.00 0.00 39.27 2.74
2139 3340 4.467795 ACAGACTTGATGTGTAGGCATAGT 59.532 41.667 0.00 0.00 31.72 2.12
2159 3360 2.194056 CATCGCTTCCTGGGCCAT 59.806 61.111 6.72 0.00 0.00 4.40
2161 3362 0.604780 CATCGCTTCCTGGGCCATAG 60.605 60.000 6.72 6.37 0.00 2.23
2165 3366 0.108774 GCTTCCTGGGCCATAGGTAC 59.891 60.000 21.00 10.68 36.67 3.34
2171 3372 2.091333 CCTGGGCCATAGGTACCAAAAT 60.091 50.000 15.94 1.34 33.12 1.82
2200 3404 2.877691 CTTAAGGCTGGCGTTGGC 59.122 61.111 10.23 0.00 38.90 4.52
2229 3433 5.866335 ATAATCTCGTGCGGTTTACAAAA 57.134 34.783 0.00 0.00 0.00 2.44
2236 3440 1.267261 TGCGGTTTACAAAATCCCACG 59.733 47.619 0.00 0.00 0.00 4.94
2250 3454 0.951040 CCCACGAAGACAAGACAGCC 60.951 60.000 0.00 0.00 0.00 4.85
2323 3615 4.127566 CCAAACTTGGCCATCAATTAGG 57.872 45.455 6.09 0.00 42.21 2.69
2362 3654 2.165167 AGCAACACGTACAGCCTAGTA 58.835 47.619 0.00 0.00 0.00 1.82
2363 3655 2.559668 AGCAACACGTACAGCCTAGTAA 59.440 45.455 0.00 0.00 0.00 2.24
2364 3656 2.921754 GCAACACGTACAGCCTAGTAAG 59.078 50.000 0.00 0.00 0.00 2.34
2365 3657 3.613432 GCAACACGTACAGCCTAGTAAGT 60.613 47.826 0.00 0.00 37.20 2.24
2366 3658 4.379813 GCAACACGTACAGCCTAGTAAGTA 60.380 45.833 0.00 0.00 35.44 2.24
2367 3659 4.954092 ACACGTACAGCCTAGTAAGTAC 57.046 45.455 0.00 0.00 35.44 2.73
2368 3660 4.583871 ACACGTACAGCCTAGTAAGTACT 58.416 43.478 11.59 0.00 35.44 2.73
2369 3661 4.633565 ACACGTACAGCCTAGTAAGTACTC 59.366 45.833 0.00 0.00 35.44 2.59
2372 3664 4.637534 CGTACAGCCTAGTAAGTACTCCAA 59.362 45.833 0.00 0.00 37.73 3.53
2396 3688 3.817647 GCACCAAGACTCATCAAAGACTT 59.182 43.478 0.00 0.00 32.65 3.01
2423 3717 4.732647 GCCATGCATGCATATTCTAATCCG 60.733 45.833 31.73 15.41 34.91 4.18
2474 3768 0.179702 TGCAGAGTCAGATGATGGGC 59.820 55.000 0.00 0.00 0.00 5.36
2475 3769 0.179702 GCAGAGTCAGATGATGGGCA 59.820 55.000 0.00 0.00 0.00 5.36
2512 3806 2.357050 CCAATTCCTGGCTGTCATGGTA 60.357 50.000 0.00 0.00 38.76 3.25
2513 3807 3.559069 CAATTCCTGGCTGTCATGGTAT 58.441 45.455 0.00 0.00 0.00 2.73
2514 3808 4.446167 CCAATTCCTGGCTGTCATGGTATA 60.446 45.833 0.00 0.00 38.76 1.47
2539 3833 6.098838 ACTTCTTTTTCTCTTCCCTTTGCATT 59.901 34.615 0.00 0.00 0.00 3.56
2583 3888 2.571212 CATGCTTAATAACGGGCCTGA 58.429 47.619 21.41 0.00 0.00 3.86
2594 3899 1.527370 GGGCCTGAGCTTAATCCGT 59.473 57.895 0.84 0.00 39.73 4.69
2599 3904 2.352960 GCCTGAGCTTAATCCGTTTGAG 59.647 50.000 0.00 0.00 35.50 3.02
2604 3909 6.984474 CCTGAGCTTAATCCGTTTGAGTAATA 59.016 38.462 0.00 0.00 33.43 0.98
2605 3910 7.657761 CCTGAGCTTAATCCGTTTGAGTAATAT 59.342 37.037 0.00 0.00 33.43 1.28
2606 3911 9.692749 CTGAGCTTAATCCGTTTGAGTAATATA 57.307 33.333 0.00 0.00 33.43 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.460263 AGGATATGGTAAATGCTTTGCGA 58.540 39.130 0.00 0.00 0.00 5.10
1 2 4.275689 TGAGGATATGGTAAATGCTTTGCG 59.724 41.667 0.00 0.00 0.00 4.85
2 3 5.300286 AGTGAGGATATGGTAAATGCTTTGC 59.700 40.000 0.00 0.00 0.00 3.68
3 4 6.949352 AGTGAGGATATGGTAAATGCTTTG 57.051 37.500 0.00 0.00 0.00 2.77
4 5 7.118723 TCAAGTGAGGATATGGTAAATGCTTT 58.881 34.615 0.00 0.00 0.00 3.51
6 7 6.252599 TCAAGTGAGGATATGGTAAATGCT 57.747 37.500 0.00 0.00 0.00 3.79
8 9 9.123902 TGATTTCAAGTGAGGATATGGTAAATG 57.876 33.333 0.00 0.00 0.00 2.32
9 10 9.347240 CTGATTTCAAGTGAGGATATGGTAAAT 57.653 33.333 0.00 0.00 0.00 1.40
10 11 7.775093 CCTGATTTCAAGTGAGGATATGGTAAA 59.225 37.037 0.00 0.00 0.00 2.01
11 12 7.282585 CCTGATTTCAAGTGAGGATATGGTAA 58.717 38.462 0.00 0.00 0.00 2.85
12 13 6.183361 CCCTGATTTCAAGTGAGGATATGGTA 60.183 42.308 0.00 0.00 0.00 3.25
13 14 5.398353 CCCTGATTTCAAGTGAGGATATGGT 60.398 44.000 0.00 0.00 0.00 3.55
14 15 5.068636 CCCTGATTTCAAGTGAGGATATGG 58.931 45.833 0.00 0.00 0.00 2.74
15 16 5.068636 CCCCTGATTTCAAGTGAGGATATG 58.931 45.833 0.00 0.00 0.00 1.78
16 17 4.977739 TCCCCTGATTTCAAGTGAGGATAT 59.022 41.667 0.00 0.00 0.00 1.63
17 18 4.370776 TCCCCTGATTTCAAGTGAGGATA 58.629 43.478 0.00 0.00 0.00 2.59
18 19 3.192944 TCCCCTGATTTCAAGTGAGGAT 58.807 45.455 0.00 0.00 0.00 3.24
19 20 2.631384 TCCCCTGATTTCAAGTGAGGA 58.369 47.619 0.00 0.00 0.00 3.71
20 21 3.350833 CTTCCCCTGATTTCAAGTGAGG 58.649 50.000 0.00 0.00 0.00 3.86
21 22 3.009473 TCCTTCCCCTGATTTCAAGTGAG 59.991 47.826 0.00 0.00 0.00 3.51
22 23 2.986019 TCCTTCCCCTGATTTCAAGTGA 59.014 45.455 0.00 0.00 0.00 3.41
23 24 3.009473 TCTCCTTCCCCTGATTTCAAGTG 59.991 47.826 0.00 0.00 0.00 3.16
24 25 3.260205 TCTCCTTCCCCTGATTTCAAGT 58.740 45.455 0.00 0.00 0.00 3.16
25 26 3.521126 TCTCTCCTTCCCCTGATTTCAAG 59.479 47.826 0.00 0.00 0.00 3.02
26 27 3.531059 TCTCTCCTTCCCCTGATTTCAA 58.469 45.455 0.00 0.00 0.00 2.69
27 28 3.205519 TCTCTCCTTCCCCTGATTTCA 57.794 47.619 0.00 0.00 0.00 2.69
28 29 4.787135 AATCTCTCCTTCCCCTGATTTC 57.213 45.455 0.00 0.00 0.00 2.17
29 30 6.658555 TTTAATCTCTCCTTCCCCTGATTT 57.341 37.500 0.00 0.00 0.00 2.17
30 31 6.608922 CATTTAATCTCTCCTTCCCCTGATT 58.391 40.000 0.00 0.00 0.00 2.57
31 32 5.457342 GCATTTAATCTCTCCTTCCCCTGAT 60.457 44.000 0.00 0.00 0.00 2.90
32 33 4.141390 GCATTTAATCTCTCCTTCCCCTGA 60.141 45.833 0.00 0.00 0.00 3.86
33 34 4.140536 GCATTTAATCTCTCCTTCCCCTG 58.859 47.826 0.00 0.00 0.00 4.45
34 35 4.050757 AGCATTTAATCTCTCCTTCCCCT 58.949 43.478 0.00 0.00 0.00 4.79
35 36 4.445557 AGCATTTAATCTCTCCTTCCCC 57.554 45.455 0.00 0.00 0.00 4.81
36 37 7.721399 TCATAAAGCATTTAATCTCTCCTTCCC 59.279 37.037 0.00 0.00 44.76 3.97
37 38 8.682936 TCATAAAGCATTTAATCTCTCCTTCC 57.317 34.615 0.00 0.00 44.76 3.46
50 51 9.048446 GTGGCATTCATAAATCATAAAGCATTT 57.952 29.630 0.00 0.00 43.42 2.32
51 52 7.383029 CGTGGCATTCATAAATCATAAAGCATT 59.617 33.333 0.00 0.00 0.00 3.56
52 53 6.864685 CGTGGCATTCATAAATCATAAAGCAT 59.135 34.615 0.00 0.00 0.00 3.79
53 54 6.183360 ACGTGGCATTCATAAATCATAAAGCA 60.183 34.615 0.00 0.00 0.00 3.91
54 55 6.142798 CACGTGGCATTCATAAATCATAAAGC 59.857 38.462 7.95 0.00 0.00 3.51
55 56 7.195646 ACACGTGGCATTCATAAATCATAAAG 58.804 34.615 21.57 0.00 0.00 1.85
56 57 7.094508 ACACGTGGCATTCATAAATCATAAA 57.905 32.000 21.57 0.00 0.00 1.40
57 58 6.317391 TGACACGTGGCATTCATAAATCATAA 59.683 34.615 23.03 0.00 0.00 1.90
58 59 5.819901 TGACACGTGGCATTCATAAATCATA 59.180 36.000 23.03 0.00 0.00 2.15
59 60 4.639755 TGACACGTGGCATTCATAAATCAT 59.360 37.500 23.03 0.00 0.00 2.45
60 61 4.006319 TGACACGTGGCATTCATAAATCA 58.994 39.130 23.03 6.48 0.00 2.57
61 62 4.614555 TGACACGTGGCATTCATAAATC 57.385 40.909 23.03 3.54 0.00 2.17
62 63 4.036734 GGATGACACGTGGCATTCATAAAT 59.963 41.667 36.07 14.34 45.42 1.40
63 64 3.376859 GGATGACACGTGGCATTCATAAA 59.623 43.478 36.07 7.37 45.42 1.40
64 65 2.942376 GGATGACACGTGGCATTCATAA 59.058 45.455 36.07 8.22 45.42 1.90
65 66 2.093235 TGGATGACACGTGGCATTCATA 60.093 45.455 36.64 19.08 43.95 2.15
66 67 1.339920 TGGATGACACGTGGCATTCAT 60.340 47.619 36.64 26.22 43.95 2.57
67 68 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
68 69 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
69 70 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
71 72 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
72 73 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
73 74 0.462581 CCCTGATGGATGACACGTGG 60.463 60.000 21.57 1.66 35.39 4.94
74 75 0.250234 ACCCTGATGGATGACACGTG 59.750 55.000 15.48 15.48 38.00 4.49
75 76 0.250234 CACCCTGATGGATGACACGT 59.750 55.000 0.00 0.00 38.00 4.49
76 77 0.536724 TCACCCTGATGGATGACACG 59.463 55.000 0.00 0.00 38.00 4.49
77 78 1.556911 ACTCACCCTGATGGATGACAC 59.443 52.381 0.00 0.00 38.00 3.67
78 79 1.833630 GACTCACCCTGATGGATGACA 59.166 52.381 0.00 0.00 38.00 3.58
79 80 2.102252 GAGACTCACCCTGATGGATGAC 59.898 54.545 0.00 0.00 38.00 3.06
80 81 2.292455 TGAGACTCACCCTGATGGATGA 60.292 50.000 0.00 0.00 38.00 2.92
81 82 2.113807 TGAGACTCACCCTGATGGATG 58.886 52.381 0.00 0.00 38.00 3.51
82 83 2.114616 GTGAGACTCACCCTGATGGAT 58.885 52.381 22.77 0.00 41.37 3.41
83 84 1.561643 GTGAGACTCACCCTGATGGA 58.438 55.000 22.77 0.00 41.37 3.41
92 93 1.066787 GGGTTAGCAGGTGAGACTCAC 60.067 57.143 24.76 24.76 46.23 3.51
93 94 1.267121 GGGTTAGCAGGTGAGACTCA 58.733 55.000 0.00 0.00 0.00 3.41
94 95 0.173708 CGGGTTAGCAGGTGAGACTC 59.826 60.000 0.00 0.00 0.00 3.36
95 96 0.542232 ACGGGTTAGCAGGTGAGACT 60.542 55.000 0.00 0.00 0.00 3.24
96 97 0.389948 CACGGGTTAGCAGGTGAGAC 60.390 60.000 0.00 0.00 32.23 3.36
97 98 0.541063 TCACGGGTTAGCAGGTGAGA 60.541 55.000 3.98 0.00 34.71 3.27
98 99 1.972198 TCACGGGTTAGCAGGTGAG 59.028 57.895 3.98 0.00 34.71 3.51
99 100 0.541063 TCTCACGGGTTAGCAGGTGA 60.541 55.000 7.19 7.19 37.77 4.02
100 101 0.389948 GTCTCACGGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
101 102 1.542187 GGTCTCACGGGTTAGCAGGT 61.542 60.000 0.00 0.00 0.00 4.00
102 103 1.218316 GGTCTCACGGGTTAGCAGG 59.782 63.158 0.00 0.00 0.00 4.85
103 104 0.108615 CAGGTCTCACGGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
104 105 1.541310 CCAGGTCTCACGGGTTAGCA 61.541 60.000 0.00 0.00 0.00 3.49
105 106 1.218316 CCAGGTCTCACGGGTTAGC 59.782 63.158 0.00 0.00 0.00 3.09
106 107 0.531200 GACCAGGTCTCACGGGTTAG 59.469 60.000 12.94 0.00 32.77 2.34
107 108 0.113776 AGACCAGGTCTCACGGGTTA 59.886 55.000 17.31 0.00 38.71 2.85
108 109 1.152312 AGACCAGGTCTCACGGGTT 60.152 57.895 17.31 0.00 38.71 4.11
109 110 2.526628 AGACCAGGTCTCACGGGT 59.473 61.111 17.31 0.00 38.71 5.28
143 144 1.767759 ATTCCTTGGCAGGTATGTGC 58.232 50.000 0.00 0.00 41.69 4.57
144 145 3.480470 CCTATTCCTTGGCAGGTATGTG 58.520 50.000 0.00 0.00 41.69 3.21
145 146 2.443255 CCCTATTCCTTGGCAGGTATGT 59.557 50.000 0.00 0.00 41.69 2.29
146 147 2.224867 CCCCTATTCCTTGGCAGGTATG 60.225 54.545 0.00 0.00 41.69 2.39
147 148 2.065799 CCCCTATTCCTTGGCAGGTAT 58.934 52.381 0.00 0.00 41.69 2.73
148 149 1.518367 CCCCTATTCCTTGGCAGGTA 58.482 55.000 0.00 0.00 41.69 3.08
149 150 1.937924 GCCCCTATTCCTTGGCAGGT 61.938 60.000 0.00 0.00 43.46 4.00
150 151 1.152673 GCCCCTATTCCTTGGCAGG 60.153 63.158 0.00 0.00 43.46 4.85
151 152 4.587056 GCCCCTATTCCTTGGCAG 57.413 61.111 0.00 0.00 43.46 4.85
153 154 1.425448 ACTATGCCCCTATTCCTTGGC 59.575 52.381 0.00 0.00 44.27 4.52
154 155 4.993705 TTACTATGCCCCTATTCCTTGG 57.006 45.455 0.00 0.00 0.00 3.61
155 156 7.839680 AAAATTACTATGCCCCTATTCCTTG 57.160 36.000 0.00 0.00 0.00 3.61
156 157 9.588096 CTTAAAATTACTATGCCCCTATTCCTT 57.412 33.333 0.00 0.00 0.00 3.36
157 158 8.170730 CCTTAAAATTACTATGCCCCTATTCCT 58.829 37.037 0.00 0.00 0.00 3.36
158 159 7.948447 ACCTTAAAATTACTATGCCCCTATTCC 59.052 37.037 0.00 0.00 0.00 3.01
159 160 8.935614 ACCTTAAAATTACTATGCCCCTATTC 57.064 34.615 0.00 0.00 0.00 1.75
160 161 9.363401 GAACCTTAAAATTACTATGCCCCTATT 57.637 33.333 0.00 0.00 0.00 1.73
161 162 8.507761 TGAACCTTAAAATTACTATGCCCCTAT 58.492 33.333 0.00 0.00 0.00 2.57
162 163 7.874252 TGAACCTTAAAATTACTATGCCCCTA 58.126 34.615 0.00 0.00 0.00 3.53
163 164 6.737608 TGAACCTTAAAATTACTATGCCCCT 58.262 36.000 0.00 0.00 0.00 4.79
164 165 6.605995 ACTGAACCTTAAAATTACTATGCCCC 59.394 38.462 0.00 0.00 0.00 5.80
165 166 7.640597 ACTGAACCTTAAAATTACTATGCCC 57.359 36.000 0.00 0.00 0.00 5.36
166 167 8.520351 ACAACTGAACCTTAAAATTACTATGCC 58.480 33.333 0.00 0.00 0.00 4.40
167 168 9.908152 AACAACTGAACCTTAAAATTACTATGC 57.092 29.630 0.00 0.00 0.00 3.14
172 173 8.752254 GCTTCAACAACTGAACCTTAAAATTAC 58.248 33.333 0.00 0.00 39.20 1.89
173 174 8.691797 AGCTTCAACAACTGAACCTTAAAATTA 58.308 29.630 0.00 0.00 39.20 1.40
174 175 7.555965 AGCTTCAACAACTGAACCTTAAAATT 58.444 30.769 0.00 0.00 39.20 1.82
175 176 7.112452 AGCTTCAACAACTGAACCTTAAAAT 57.888 32.000 0.00 0.00 39.20 1.82
176 177 6.524101 AGCTTCAACAACTGAACCTTAAAA 57.476 33.333 0.00 0.00 39.20 1.52
177 178 6.524101 AAGCTTCAACAACTGAACCTTAAA 57.476 33.333 0.00 0.00 37.92 1.52
178 179 6.238266 CGTAAGCTTCAACAACTGAACCTTAA 60.238 38.462 0.00 0.00 41.03 1.85
179 180 5.235616 CGTAAGCTTCAACAACTGAACCTTA 59.764 40.000 0.00 0.30 39.57 2.69
180 181 4.035208 CGTAAGCTTCAACAACTGAACCTT 59.965 41.667 0.00 1.82 41.09 3.50
181 182 3.560068 CGTAAGCTTCAACAACTGAACCT 59.440 43.478 0.00 0.00 39.20 3.50
182 183 3.558418 TCGTAAGCTTCAACAACTGAACC 59.442 43.478 0.00 0.00 39.64 3.62
183 184 4.789095 TCGTAAGCTTCAACAACTGAAC 57.211 40.909 0.00 0.00 39.64 3.18
184 185 6.371809 AAATCGTAAGCTTCAACAACTGAA 57.628 33.333 0.00 0.00 41.97 3.02
185 186 6.371809 AAAATCGTAAGCTTCAACAACTGA 57.628 33.333 0.00 0.00 37.18 3.41
186 187 6.690957 TGAAAAATCGTAAGCTTCAACAACTG 59.309 34.615 0.00 0.00 37.18 3.16
187 188 6.791303 TGAAAAATCGTAAGCTTCAACAACT 58.209 32.000 0.00 0.00 37.18 3.16
188 189 7.591426 AGATGAAAAATCGTAAGCTTCAACAAC 59.409 33.333 0.00 0.00 37.18 3.32
189 190 7.591057 CAGATGAAAAATCGTAAGCTTCAACAA 59.409 33.333 0.00 0.00 37.18 2.83
190 191 7.041440 TCAGATGAAAAATCGTAAGCTTCAACA 60.041 33.333 0.00 0.00 37.18 3.33
191 192 7.298122 TCAGATGAAAAATCGTAAGCTTCAAC 58.702 34.615 0.00 0.00 37.18 3.18
192 193 7.433708 TCAGATGAAAAATCGTAAGCTTCAA 57.566 32.000 0.00 0.00 37.18 2.69
193 194 7.433708 TTCAGATGAAAAATCGTAAGCTTCA 57.566 32.000 0.00 0.00 37.18 3.02
194 195 8.017946 AGTTTCAGATGAAAAATCGTAAGCTTC 58.982 33.333 0.00 0.00 44.58 3.86
195 196 7.875971 AGTTTCAGATGAAAAATCGTAAGCTT 58.124 30.769 9.47 3.48 44.58 3.74
196 197 7.440523 AGTTTCAGATGAAAAATCGTAAGCT 57.559 32.000 9.47 0.00 44.58 3.74
197 198 7.409767 GCAAGTTTCAGATGAAAAATCGTAAGC 60.410 37.037 9.47 3.30 44.58 3.09
198 199 7.591057 TGCAAGTTTCAGATGAAAAATCGTAAG 59.409 33.333 9.47 0.00 44.58 2.34
199 200 7.421599 TGCAAGTTTCAGATGAAAAATCGTAA 58.578 30.769 9.47 0.00 44.58 3.18
200 201 6.964908 TGCAAGTTTCAGATGAAAAATCGTA 58.035 32.000 9.47 0.00 44.58 3.43
201 202 5.830912 TGCAAGTTTCAGATGAAAAATCGT 58.169 33.333 9.47 0.00 44.58 3.73
202 203 6.752335 TTGCAAGTTTCAGATGAAAAATCG 57.248 33.333 9.47 1.39 44.58 3.34
203 204 9.940166 AAAATTGCAAGTTTCAGATGAAAAATC 57.060 25.926 18.47 0.00 44.58 2.17
204 205 9.724839 CAAAATTGCAAGTTTCAGATGAAAAAT 57.275 25.926 21.03 3.55 44.58 1.82
205 206 8.728833 ACAAAATTGCAAGTTTCAGATGAAAAA 58.271 25.926 21.03 1.42 44.58 1.94
206 207 8.176365 CACAAAATTGCAAGTTTCAGATGAAAA 58.824 29.630 21.03 0.00 44.58 2.29
207 208 7.333921 ACACAAAATTGCAAGTTTCAGATGAAA 59.666 29.630 21.03 3.91 41.29 2.69
208 209 6.817641 ACACAAAATTGCAAGTTTCAGATGAA 59.182 30.769 21.03 0.00 0.00 2.57
209 210 6.339730 ACACAAAATTGCAAGTTTCAGATGA 58.660 32.000 21.03 0.00 0.00 2.92
210 211 6.592798 ACACAAAATTGCAAGTTTCAGATG 57.407 33.333 21.03 17.59 0.00 2.90
211 212 7.119553 ACAAACACAAAATTGCAAGTTTCAGAT 59.880 29.630 21.03 9.20 32.45 2.90
212 213 6.426328 ACAAACACAAAATTGCAAGTTTCAGA 59.574 30.769 21.03 0.00 32.45 3.27
213 214 6.601264 ACAAACACAAAATTGCAAGTTTCAG 58.399 32.000 21.03 17.61 32.45 3.02
214 215 6.551385 ACAAACACAAAATTGCAAGTTTCA 57.449 29.167 21.03 0.00 32.45 2.69
215 216 7.850268 AAACAAACACAAAATTGCAAGTTTC 57.150 28.000 21.03 0.00 32.45 2.78
216 217 8.640091 AAAAACAAACACAAAATTGCAAGTTT 57.360 23.077 18.47 18.47 33.92 2.66
217 218 9.905171 ATAAAAACAAACACAAAATTGCAAGTT 57.095 22.222 6.26 6.26 0.00 2.66
218 219 9.553418 GATAAAAACAAACACAAAATTGCAAGT 57.447 25.926 4.94 0.00 0.00 3.16
219 220 9.552114 TGATAAAAACAAACACAAAATTGCAAG 57.448 25.926 4.94 0.00 0.00 4.01
220 221 9.897744 TTGATAAAAACAAACACAAAATTGCAA 57.102 22.222 0.00 0.00 0.00 4.08
221 222 9.552114 CTTGATAAAAACAAACACAAAATTGCA 57.448 25.926 0.00 0.00 0.00 4.08
222 223 9.553418 ACTTGATAAAAACAAACACAAAATTGC 57.447 25.926 0.00 0.00 0.00 3.56
270 271 4.075682 TGATGCCTACGATCAACCAAAAA 58.924 39.130 0.00 0.00 0.00 1.94
271 272 3.680490 TGATGCCTACGATCAACCAAAA 58.320 40.909 0.00 0.00 0.00 2.44
272 273 3.342377 TGATGCCTACGATCAACCAAA 57.658 42.857 0.00 0.00 0.00 3.28
273 274 3.342377 TTGATGCCTACGATCAACCAA 57.658 42.857 0.00 0.00 35.38 3.67
274 275 3.342377 TTTGATGCCTACGATCAACCA 57.658 42.857 0.00 0.00 39.09 3.67
275 276 4.576463 AGATTTTGATGCCTACGATCAACC 59.424 41.667 0.00 0.00 39.09 3.77
276 277 5.741388 AGATTTTGATGCCTACGATCAAC 57.259 39.130 0.00 0.00 39.09 3.18
277 278 5.879777 TCAAGATTTTGATGCCTACGATCAA 59.120 36.000 0.00 0.00 38.37 2.57
278 279 5.427378 TCAAGATTTTGATGCCTACGATCA 58.573 37.500 0.00 0.00 38.37 2.92
279 280 5.991328 TCAAGATTTTGATGCCTACGATC 57.009 39.130 0.00 0.00 38.37 3.69
290 291 5.584649 AGCGACCGATAAATCAAGATTTTGA 59.415 36.000 12.73 0.54 46.67 2.69
291 292 5.810525 AGCGACCGATAAATCAAGATTTTG 58.189 37.500 12.73 4.76 40.99 2.44
292 293 6.128007 ACAAGCGACCGATAAATCAAGATTTT 60.128 34.615 12.73 2.54 40.99 1.82
293 294 5.354234 ACAAGCGACCGATAAATCAAGATTT 59.646 36.000 12.21 12.21 42.95 2.17
294 295 4.876107 ACAAGCGACCGATAAATCAAGATT 59.124 37.500 0.00 0.00 0.00 2.40
295 296 4.442706 ACAAGCGACCGATAAATCAAGAT 58.557 39.130 0.00 0.00 0.00 2.40
296 297 3.857052 ACAAGCGACCGATAAATCAAGA 58.143 40.909 0.00 0.00 0.00 3.02
297 298 5.907197 ATACAAGCGACCGATAAATCAAG 57.093 39.130 0.00 0.00 0.00 3.02
298 299 7.493320 ACTTAATACAAGCGACCGATAAATCAA 59.507 33.333 0.00 0.00 0.00 2.57
299 300 6.982141 ACTTAATACAAGCGACCGATAAATCA 59.018 34.615 0.00 0.00 0.00 2.57
300 301 7.404139 ACTTAATACAAGCGACCGATAAATC 57.596 36.000 0.00 0.00 0.00 2.17
301 302 7.781548 AACTTAATACAAGCGACCGATAAAT 57.218 32.000 0.00 0.00 0.00 1.40
302 303 7.599630 AAACTTAATACAAGCGACCGATAAA 57.400 32.000 0.00 0.00 0.00 1.40
303 304 7.599630 AAAACTTAATACAAGCGACCGATAA 57.400 32.000 0.00 0.00 0.00 1.75
304 305 8.700722 TTAAAACTTAATACAAGCGACCGATA 57.299 30.769 0.00 0.00 0.00 2.92
305 306 7.546667 TCTTAAAACTTAATACAAGCGACCGAT 59.453 33.333 0.00 0.00 0.00 4.18
306 307 6.867816 TCTTAAAACTTAATACAAGCGACCGA 59.132 34.615 0.00 0.00 0.00 4.69
307 308 7.052565 TCTTAAAACTTAATACAAGCGACCG 57.947 36.000 0.00 0.00 0.00 4.79
308 309 8.026341 ACTCTTAAAACTTAATACAAGCGACC 57.974 34.615 0.00 0.00 0.00 4.79
309 310 9.314501 CAACTCTTAAAACTTAATACAAGCGAC 57.685 33.333 0.00 0.00 0.00 5.19
310 311 9.263538 TCAACTCTTAAAACTTAATACAAGCGA 57.736 29.630 0.00 0.00 0.00 4.93
311 312 9.872757 TTCAACTCTTAAAACTTAATACAAGCG 57.127 29.630 0.00 0.00 0.00 4.68
353 354 8.466798 CCGGGACTTTCAAATAATATTTGTTCT 58.533 33.333 21.02 6.63 0.00 3.01
354 355 7.222031 GCCGGGACTTTCAAATAATATTTGTTC 59.778 37.037 21.02 14.22 0.00 3.18
355 356 7.039270 GCCGGGACTTTCAAATAATATTTGTT 58.961 34.615 21.02 8.08 0.00 2.83
356 357 6.406512 GGCCGGGACTTTCAAATAATATTTGT 60.407 38.462 21.02 6.06 0.00 2.83
357 358 5.983118 GGCCGGGACTTTCAAATAATATTTG 59.017 40.000 17.19 17.19 0.00 2.32
362 363 3.023832 CTGGCCGGGACTTTCAAATAAT 58.976 45.455 2.57 0.00 0.00 1.28
369 370 0.544697 TTATCCTGGCCGGGACTTTC 59.455 55.000 36.28 0.00 38.30 2.62
374 375 1.202099 TGTGTTTATCCTGGCCGGGA 61.202 55.000 35.64 35.64 39.95 5.14
377 378 6.627395 TTATATTTGTGTTTATCCTGGCCG 57.373 37.500 0.00 0.00 0.00 6.13
378 379 9.093970 GTTTTTATATTTGTGTTTATCCTGGCC 57.906 33.333 0.00 0.00 0.00 5.36
434 435 7.274686 TCGGTTTTTGATTTTCAGACTTTCAAC 59.725 33.333 0.00 0.00 0.00 3.18
442 444 8.764524 TTTTCTTTCGGTTTTTGATTTTCAGA 57.235 26.923 0.00 0.00 0.00 3.27
506 509 2.812358 AAACAGAAACGGATTTGGGC 57.188 45.000 0.00 0.00 0.00 5.36
517 520 4.737352 GCATCTGCCAGTGAAAAACAGAAA 60.737 41.667 0.00 0.00 40.49 2.52
521 530 2.030371 TGCATCTGCCAGTGAAAAACA 58.970 42.857 0.00 0.00 41.18 2.83
523 532 2.309613 AGTGCATCTGCCAGTGAAAAA 58.690 42.857 0.00 0.00 41.18 1.94
527 536 0.689055 AGAAGTGCATCTGCCAGTGA 59.311 50.000 0.00 0.00 41.18 3.41
533 542 5.276584 CGTGAATAAGTAGAAGTGCATCTGC 60.277 44.000 0.00 0.00 42.50 4.26
549 558 3.734463 TGCAGAACTTGTCCGTGAATAA 58.266 40.909 0.00 0.00 0.00 1.40
550 559 3.325870 CTGCAGAACTTGTCCGTGAATA 58.674 45.455 8.42 0.00 0.00 1.75
551 560 2.146342 CTGCAGAACTTGTCCGTGAAT 58.854 47.619 8.42 0.00 0.00 2.57
552 561 1.581934 CTGCAGAACTTGTCCGTGAA 58.418 50.000 8.42 0.00 0.00 3.18
632 641 2.351726 GCTGATATCCGTCGCACTTTTT 59.648 45.455 0.00 0.00 0.00 1.94
633 642 1.933853 GCTGATATCCGTCGCACTTTT 59.066 47.619 0.00 0.00 0.00 2.27
634 643 1.137086 AGCTGATATCCGTCGCACTTT 59.863 47.619 0.00 0.00 0.00 2.66
637 646 0.999228 CGAGCTGATATCCGTCGCAC 60.999 60.000 0.00 0.00 0.00 5.34
640 649 1.442857 GCCGAGCTGATATCCGTCG 60.443 63.158 0.00 5.94 0.00 5.12
694 707 1.079503 GCAGACCCGACTGTGAATTC 58.920 55.000 0.00 0.00 39.73 2.17
853 1964 3.128068 GTGATGATGGTAAAACCGAACCC 59.872 47.826 0.00 0.00 42.58 4.11
1043 2161 7.389884 CAGAGAAAATGAGAAGATGTTCTTGGA 59.610 37.037 6.56 0.00 43.50 3.53
1055 2173 5.184479 CCATTGGAAGCAGAGAAAATGAGAA 59.816 40.000 0.00 0.00 0.00 2.87
1060 2178 2.165030 CGCCATTGGAAGCAGAGAAAAT 59.835 45.455 6.95 0.00 0.00 1.82
1061 2179 1.541147 CGCCATTGGAAGCAGAGAAAA 59.459 47.619 6.95 0.00 0.00 2.29
1063 2181 0.324614 TCGCCATTGGAAGCAGAGAA 59.675 50.000 6.95 0.00 0.00 2.87
1435 2567 2.456119 CGCGTTCTCCAGCATCCAC 61.456 63.158 0.00 0.00 0.00 4.02
1616 2753 5.979288 ATATTACAACTCTACCCCTAGCG 57.021 43.478 0.00 0.00 0.00 4.26
1692 2844 5.737290 CGAACGCCTCAAGGTTAAATAAATG 59.263 40.000 0.00 0.00 37.57 2.32
1741 2893 3.937062 CTTGGGCGCGCGGTAATC 61.937 66.667 33.06 14.30 0.00 1.75
1761 2913 1.392589 ATAGCCCCAAAACAGCATCG 58.607 50.000 0.00 0.00 0.00 3.84
1840 2992 2.644798 TGAAAGAGGAGAGGAAAAGGGG 59.355 50.000 0.00 0.00 0.00 4.79
1907 3060 8.886719 CATGCACTTTATATATACACAGATGGG 58.113 37.037 0.00 0.00 0.00 4.00
1920 3082 3.298619 TGGGCTTGCATGCACTTTATAT 58.701 40.909 25.27 0.00 37.25 0.86
1921 3083 2.732763 TGGGCTTGCATGCACTTTATA 58.267 42.857 25.27 3.16 37.25 0.98
1922 3084 1.559368 TGGGCTTGCATGCACTTTAT 58.441 45.000 25.27 0.00 37.25 1.40
1923 3085 1.559368 ATGGGCTTGCATGCACTTTA 58.441 45.000 25.27 4.47 37.25 1.85
1924 3086 0.688487 AATGGGCTTGCATGCACTTT 59.312 45.000 25.27 21.80 37.25 2.66
1925 3087 0.688487 AAATGGGCTTGCATGCACTT 59.312 45.000 25.27 17.47 37.25 3.16
1926 3088 0.248289 GAAATGGGCTTGCATGCACT 59.752 50.000 25.27 7.54 37.25 4.40
1927 3089 0.741927 GGAAATGGGCTTGCATGCAC 60.742 55.000 22.58 21.89 36.79 4.57
1928 3090 0.905809 AGGAAATGGGCTTGCATGCA 60.906 50.000 24.15 18.46 34.04 3.96
1929 3091 0.251073 AAGGAAATGGGCTTGCATGC 59.749 50.000 15.87 15.87 0.00 4.06
1930 3092 1.829222 AGAAGGAAATGGGCTTGCATG 59.171 47.619 0.00 0.00 0.00 4.06
1931 3093 1.829222 CAGAAGGAAATGGGCTTGCAT 59.171 47.619 0.00 0.00 0.00 3.96
1932 3094 1.259609 CAGAAGGAAATGGGCTTGCA 58.740 50.000 0.00 0.00 0.00 4.08
2003 3165 9.250624 CGGCCAAGAATAATAATATCTACTAGC 57.749 37.037 2.24 0.00 0.00 3.42
2028 3193 3.365969 GGTGAAAATGCCTTCAACTACCG 60.366 47.826 2.06 0.00 39.50 4.02
2059 3224 8.430801 AAATGACATCTTATCTGTAGCAGTTC 57.569 34.615 0.00 0.00 32.61 3.01
2084 3249 3.634448 TGATCTGTTTCCCGCAAAAGAAA 59.366 39.130 0.00 0.00 0.00 2.52
2085 3250 3.218453 TGATCTGTTTCCCGCAAAAGAA 58.782 40.909 0.00 0.00 0.00 2.52
2086 3251 2.813754 CTGATCTGTTTCCCGCAAAAGA 59.186 45.455 0.00 0.00 0.00 2.52
2087 3252 2.813754 TCTGATCTGTTTCCCGCAAAAG 59.186 45.455 0.00 0.00 0.00 2.27
2088 3253 2.857483 TCTGATCTGTTTCCCGCAAAA 58.143 42.857 0.00 0.00 0.00 2.44
2089 3254 2.559698 TCTGATCTGTTTCCCGCAAA 57.440 45.000 0.00 0.00 0.00 3.68
2090 3255 2.290260 ACATCTGATCTGTTTCCCGCAA 60.290 45.455 0.00 0.00 0.00 4.85
2091 3256 1.278985 ACATCTGATCTGTTTCCCGCA 59.721 47.619 0.00 0.00 0.00 5.69
2092 3257 1.936547 GACATCTGATCTGTTTCCCGC 59.063 52.381 0.00 0.00 0.00 6.13
2093 3258 3.251479 TGACATCTGATCTGTTTCCCG 57.749 47.619 0.00 0.00 0.00 5.14
2094 3259 5.241506 TGTTTTGACATCTGATCTGTTTCCC 59.758 40.000 0.00 0.00 0.00 3.97
2095 3260 6.205464 TCTGTTTTGACATCTGATCTGTTTCC 59.795 38.462 0.00 0.00 0.00 3.13
2096 3261 7.041508 AGTCTGTTTTGACATCTGATCTGTTTC 60.042 37.037 0.00 0.00 39.27 2.78
2097 3262 6.769822 AGTCTGTTTTGACATCTGATCTGTTT 59.230 34.615 0.00 0.00 39.27 2.83
2100 3265 6.426025 TCAAGTCTGTTTTGACATCTGATCTG 59.574 38.462 0.00 0.00 39.27 2.90
2102 3267 6.791887 TCAAGTCTGTTTTGACATCTGATC 57.208 37.500 0.00 0.00 39.27 2.92
2103 3268 6.713903 ACATCAAGTCTGTTTTGACATCTGAT 59.286 34.615 0.00 0.00 37.38 2.90
2104 3269 6.017687 CACATCAAGTCTGTTTTGACATCTGA 60.018 38.462 0.00 0.00 37.38 3.27
2105 3270 6.140786 CACATCAAGTCTGTTTTGACATCTG 58.859 40.000 0.00 0.00 37.38 2.90
2106 3271 5.824624 ACACATCAAGTCTGTTTTGACATCT 59.175 36.000 0.00 0.00 37.38 2.90
2107 3272 6.064846 ACACATCAAGTCTGTTTTGACATC 57.935 37.500 0.00 0.00 37.38 3.06
2115 3316 3.769739 TGCCTACACATCAAGTCTGTT 57.230 42.857 0.00 0.00 0.00 3.16
2139 3340 2.751436 GCCCAGGAAGCGATGCAA 60.751 61.111 0.00 0.00 0.00 4.08
2142 3343 0.604780 CTATGGCCCAGGAAGCGATG 60.605 60.000 0.00 0.00 30.79 3.84
2146 3347 0.108774 GTACCTATGGCCCAGGAAGC 59.891 60.000 23.84 11.15 36.61 3.86
2159 3360 7.118723 AGCATTCTTGATGATTTTGGTACCTA 58.881 34.615 14.36 1.78 38.03 3.08
2161 3362 6.212888 AGCATTCTTGATGATTTTGGTACC 57.787 37.500 4.43 4.43 38.03 3.34
2165 3366 6.257193 GCCTTAAGCATTCTTGATGATTTTGG 59.743 38.462 0.00 0.71 41.36 3.28
2200 3404 0.852777 CGCACGAGATTATTGTCCCG 59.147 55.000 0.00 0.00 0.00 5.14
2229 3433 1.338200 GCTGTCTTGTCTTCGTGGGAT 60.338 52.381 0.00 0.00 0.00 3.85
2236 3440 0.951040 CCCACGGCTGTCTTGTCTTC 60.951 60.000 0.00 0.00 0.00 2.87
2285 3577 4.402474 AGTTTGGAGAAAGTTTGACCCAAG 59.598 41.667 0.00 0.00 35.43 3.61
2362 3654 1.414919 TCTTGGTGCGTTGGAGTACTT 59.585 47.619 0.00 0.00 0.00 2.24
2363 3655 1.045407 TCTTGGTGCGTTGGAGTACT 58.955 50.000 0.00 0.00 0.00 2.73
2364 3656 1.145803 GTCTTGGTGCGTTGGAGTAC 58.854 55.000 0.00 0.00 0.00 2.73
2365 3657 1.000506 GAGTCTTGGTGCGTTGGAGTA 59.999 52.381 0.00 0.00 0.00 2.59
2366 3658 0.249911 GAGTCTTGGTGCGTTGGAGT 60.250 55.000 0.00 0.00 0.00 3.85
2367 3659 0.249868 TGAGTCTTGGTGCGTTGGAG 60.250 55.000 0.00 0.00 0.00 3.86
2368 3660 0.396435 ATGAGTCTTGGTGCGTTGGA 59.604 50.000 0.00 0.00 0.00 3.53
2369 3661 0.798776 GATGAGTCTTGGTGCGTTGG 59.201 55.000 0.00 0.00 0.00 3.77
2372 3664 2.146342 CTTTGATGAGTCTTGGTGCGT 58.854 47.619 0.00 0.00 0.00 5.24
2423 3717 6.235664 TCCACTTACTTAAAACCCTGTGATC 58.764 40.000 0.00 0.00 0.00 2.92
2512 3806 6.777580 TGCAAAGGGAAGAGAAAAAGAAGTAT 59.222 34.615 0.00 0.00 0.00 2.12
2513 3807 6.126409 TGCAAAGGGAAGAGAAAAAGAAGTA 58.874 36.000 0.00 0.00 0.00 2.24
2514 3808 4.956075 TGCAAAGGGAAGAGAAAAAGAAGT 59.044 37.500 0.00 0.00 0.00 3.01
2561 3855 0.958822 GGCCCGTTATTAAGCATGGG 59.041 55.000 8.96 8.96 41.74 4.00
2562 3856 1.608590 CAGGCCCGTTATTAAGCATGG 59.391 52.381 0.00 0.00 33.64 3.66
2571 3876 2.224548 GGATTAAGCTCAGGCCCGTTAT 60.225 50.000 0.00 0.00 39.73 1.89
2583 3888 9.694137 GACTATATTACTCAAACGGATTAAGCT 57.306 33.333 0.00 0.00 0.00 3.74
2594 3899 9.083422 CATCCTCTCCAGACTATATTACTCAAA 57.917 37.037 0.00 0.00 0.00 2.69
2599 3904 8.682710 GTCATCATCCTCTCCAGACTATATTAC 58.317 40.741 0.00 0.00 0.00 1.89
2604 3909 5.072129 TGTCATCATCCTCTCCAGACTAT 57.928 43.478 0.00 0.00 0.00 2.12
2605 3910 4.526438 TGTCATCATCCTCTCCAGACTA 57.474 45.455 0.00 0.00 0.00 2.59
2606 3911 3.395054 TGTCATCATCCTCTCCAGACT 57.605 47.619 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.