>input_sequence_71789
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-------------------------------------CCTGCAAGTCATCCCTACGCCTCCTCTCTCTTTCCGACTGAAC
TCCAAGAACATCTTCTCATTT--TCTCTGCTTCCAATGGCGAAGGGCGGGCTGAGCAGCAAGCTCAAGTGCATGATCAGG
CGGTGGCACTCGTCGAGCCGGATCTCGCGCACGCCCTCGGCGGCGTCGCACGGCGGCGGCGGCGGCGAGGAGGAGGACCC
GTGGGGCCGCGGTGTCGGCGGCGGCG------------CGGCGTCGTTCCACGGCGCCGACAGCGTGCCCCCGGGCCTCC
ACCCGGTCTACGTCGGCAAGTCGCGCCGCCGCTACCTCATCGCCGCCGACCTCGTCTGCCACCCGCTGTTCCAGAACCTC
GTGGACCGCTCGGGCGGCGGCGTGGGCGGCGACGGCGCCGGCGGCACCATCATCGGCTGCGAGGTGGTGCTGTTCGAGCA
CCTCCTGTGGATGCTGGAGAACGCGGACCCGCAGCCCGAGTCGCTGGACGAGCTCGTCGAGTACTACGCGTGTTGACCGG
-CGGACCGGCCGGCCGGCCAACCGCCCACATCATCCGCAGCTGGCG---CCAAGCTCGCCAGAGTTGGTGGCCTGGCCTC
TATAGGGGG-CAATTTGGTAATTCTTTCTTTACGCTAGGGGTAGAGTTGTAATAT-AAACGCTTATCGAGCGGCGA----
----------AGTGAGTAATTAAGCTGTGTGTGTGTG-------------------------------------------
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>chr5A_1_TraesCS5A01G211200
TCGCAAAGCATTTACCATATCCTCACTTGAAATCAGGGGAAGGAGAGATTAAATGCTTTATGATTTATGAATGCCACGTG
TCATCCATCAGGGTGAGTCTCACCTGCTAACCCGTGAGACCTGGTCTCATATAATTTTTTTCGGCACATACCTGCCAAGG
AATAGGGGCATAGTAATTTTAAGGTTCAGTTGTTGAAGCTTACGATTTTTCATCTGAAACTTGCAATTTTGTGTTTGTTT
TTATCAAGTTTCATAGATATTAAGACATTTTTTTTGGTTGATCGTAGGCATCAAAATCTTGATTTATCGGTCGCTTGTAT
TAAGTTTTAAGAGTTGAAATTTAAAACATGTTTAGAACAAATATTATTTGAAAGTCCCGGCCAGGATAAACACAAATATA
AAAACATAATTTAATTTGAACTCTTGTTCAAAAGGT-TGAAAGTCTGAAAATCAAAAACCGAAAGAAAAAA-CACGTGCG
ACGGACTCGGTGCCCCCGCACTTGCGTGGCCCAAATCCGTT------TCTGTTTTTCACTGGCAGATGCACTTCTACTTA
TTCACGGACAAGTTCTGCAGCCATTTTTGTGGCCTCGTGCAAGTGGCCGGCGATGAGCATATAGCTTATAATAAATCTAA
AAAAAGTGCGAC----GGATATCAGCTCGGCGTACTACCTGACGATGGACATGTCACGGTCCTTGCGAATTCACAGTCGG
GTCTGCGCTGCCGTGCTGCATGCCAACCGGAGAGAAAGAGACGGACGGACGGAC----AGATACCGCGCACCGTCACATA
CGGAGTACCACCACTTCCCGACGGGGCGGCGGCCAGTTGCCTCCCCACTGTTC---------------------------
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---------------------------CCCTCTCCTCTCCTCCGGGTTCGGTTTTACCATCATCA-------CCGTGGCC
GCGCCATGCACCGTCCCCGACACCTTGACCCTCGCCCTCCCACCGGTCTCCATCCCGCCAGTCCACAGCCGGCCTCCCCT
CCGCCCCCTATATATACCCTCTCGCCACCTCCCCGACCCTGCAAGTCATCCCTACGCCTCCTCTCTCTTTCCGACTGAAC
TCCAAGAACATCTTCTCATTT--TCTCTGCTTCCAATGGCGAAGGGCGGGCTGAGCAGCAAGCTCAAGTGCATGATCAGG
CGGTGGCACTCGTCGAGCCGGATCTCGCGCACGCCCTCGGCGGCGTCGCACGGCGGCGGCGGCGGCGAGGAGGAGGACCC
GTGGGGCCGCGGTGTCGGCGGCGGCG------------CGGCGTCGTTCCACGGCGCCGACAGCGTGCCCCCGGGCCTCC
ACCCGGTCTACGTCGGCAAGTCGCGCCGCCGCTACCTCATCGCCGCCGACCTCGTCTGCCACCCGCTGTTCCAGAACCTC
GTGGACCGCTCGGGCGGCGGCGTGGGCGGCGACGGCGCCGGCGGCACCATCATCGGCTGCGAGGTGGTGCTGTTCGAGCA
CCTCCTGTGGATGCTGGAGAACGCGGACCCGCAGCCCGAGTCGCTGGACGAGCTCGTCGAGTACTACGCGTGTTGACCGG
-CGGACCGGCCGGCCGGCCAACCGCCCACATCATCCGCAGCTGGCG---CCAAGCTCGCCAGAGTTGGTGGCCTGGCCTC
TATAGGGGG-CAATTTGGTAATTCTTTCTTTACGCTAGGGGTAGAGTTGTAATAT-AAACGCTTATCGAGCGGCGA----
----------AGTGAGTAATTAAGCTGTGTGTGTGTGTGTGGACATTTATTTAACCTTGAGGCGTTCGTGGTAATTCGGG
GACTAGCTTTGCGATTACCGCGCGCCCAAGAACGATGCTGTTTTGGGGCTATTAATCAATTTCCCTAATGATTGGTGTGG
TAGCTTCTTTTATTCTTCTTATTAATCATTTCCCCTTTTCCTCTCCTCTTTCAATAAGATATG-TATAAGATGTAGGGAT
CAATGCATCCACGTACATTCCCATCT---------GTGTATATATAAAGTGCATGCAAGCCCATTTCCTTCTGGGATCCA
TACATTCTTTTTAAATCTATTTCCTGAGATTTCTGGAAATGTCAG---CTAGTAGATATTATTATTCTTGGCCGGTAGTT
GAAGGCATTTTCACCAGCCGACAGAACTGCTACAGATAAGATGTCATTTTTCTTTTGCGGGAAACAGATCAG--------
----------------------------ATGTCAAAACAGACTTGATGTGTAGGCATAGTTGCATCGCTTCCTGGGCCAT
AGGTACCAAAATC---ATCAAGAATGCTTAAGGCTGGCGTTGGCGGGACAATAATCTCGTGCGGTTTACAAAATCCCACG
AAGACAAGACAGCC------------------------------------------------------------------
----------------------GTGGGTCGTTCAAAAACAAGCCAAAAAAGGCAACCTTGGGTCAAACTTTCTCCAAACT
TGGCCATCAATTAGGCATCATGCGCATGCACAAAGCAACACGTACAGCCTAGTAAGTACTCCAACGCACCAAGACTCATC
AAAGACTTGTCGCCATGC-ATGCA-TATTCTAATCCGATCACAGGGTTTTAAGTAAGTGGAAGTTCGGTGCAGAGTCAGA
TGATGGGCACGTACGTACGCGCGTCCAATTCCTGGCTGTCATGGTATACTTCTTTTTCTCTTCCCTTTGCATTGTTCGTA
TTTGCATGCATGCACC--------CATGCTTA---ATAACGGGCCTGAGCTTAATCCGTTTGAGTAATATAGTCTGGAGA
GGATGATGACAACTTTGGACAACTTTTGGGCATGTATTTGGACGTACTAACCAGGGCCATTTAAGTTGGT
>chr5D_359
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--------------------------------------AAATCTTATTTAAAAGGCCACGTCACGAGAAACACTAGTATG
AAAACATAACTTAATTTAAATTTTTATTCAAAATATATGAAAGCTTGAAAATCAAAAGCCGAAAGAAAAAATCACGTCCG
AGGGACTCGGTGCCCCCGCACTTGCGTGCCCCAAATCCGCTTCCGCATCCGCTTTCCACTGCCAGATGCACTTCTAC---
-TCACGGACAAGTTCCACAGCCATTTTTGTGGCCTCGTGCAAGTGGCCGGCGATGAGCATATACGGCTTAAATCT-----
---AAATAAATGTGATGGATATCAGCTCGGCGTACTACCTGACGATGGACATGTCACGGTCCTCGCAAATTCACACTCGG
GTCTGCGCTGCCGTGTTGCATGCCAACCGGAGAGAAAGAGACGGACGGACGGACGGCCAGATACCTCGCACCGTCACAAA
CGGAGTATCACCACTTCCCGACGGGGCGGCGGCCAGTTGCCTCCCCACTGTTCTCCTCTCCTCGAGTATTTGACAAAAAA
CTACCACATTAGGGGTTGGCGTCCCACAGAACTACCACATTCAAAAAAGTGGCTGATAACTACCAAAAATTTCTAATTTT
GTGACTAAAAACTACCACTTTTGAAAACTGACCGGTTTAGACGATTTAAACACGTTTATGACATGCGGGACCCACCCTTC
AGGGGTGACGTGGCGGCACGGTCAACTGTTTATTTTGACCGTTAAGTTGAGGCTAGTGAACGAATGGACGGCGTCGATGG
CGTACTGTAGGGCGGCGACCGGGGGAAACGAGTCTGCGGCGGCGGCGGCCACTTCCCCCGGGAAGGGCAACGGGAAGGCG
GGCGCGACCGAGGCCTCGGCGTCGGAGAGGACGCCCGCGGCGACATCCATCTGGCCGGCCGCGGGGTCGGTGAGGATCCC
ATCGATCTGCGGTCCGAGGGAGGAGGTGGAGAAGCCGCGGTGGGCCGCGAGGTGGGTGCCGAAGGGAAGCGGGAGGGCCA
GGCCCTGGGATCTCGAGCGCCGACGGAGGTCGCCGGAGGGGAAGTGCAGGGGGGCTTGCTGGGTGGGGAACCGGGGGGCG
GAGGAGGAGGACGGGTCCTCATGGTTGTTGTCGTGGTGGGAGGAGGGGACGAGGTGGGAGAGGGAGGGGTGGAGGCGGCG
GGTGAGGTGGCGGGAGAGGCCGGTGGCGAGGCTCCTCCGCGCGGAGAAAGCCATGGTTTTTCGGCGGCGGCGGCGGCGGC
GGGCGGGCACGGCGAAATGGCGTGGGGATCGGGGGAGAAGAGAGGGTTAGCCCGCGACGAGGCGGATATTCCACTCGCGG
TAGGCTGCTGACGTGTGGGCCCCACCTGGCATAACGGTCAACTTAACGGTCAAAATAAACAGAGTTGACTGTGCCGCCAC
GTCACCCCTGAAGGGTGGGTCCCGCATGTCATAAACGTGTTTAAATCATCTAAACCGGTCATTTTTTAAAAGTGGTAGTT
TTTAGTCACAAAATTAGAAATTTTTGATAGTTATCAGTCACTTTTTTGAATGTGGTAGTTGTGTGGGACGACAACCCCTA
ATGTGGTAGTTTTTTTTGTCAAATACTCCCTCTCCTCTCCTCCAGGTTCGGTTTTACCATCATCA-------CCAT----
--GCCATGCACCGCCCCCGACACCTTGACCCTCGCCCTCCCACCGGTCTCCATCCCGCCAGTCCACAGCCGGCCTCCCCT
CCGCCTCCTATATATAACCTCTCGCCACCTCCCCGACCCTGCAAGTCATCCCTACGCCTCCTTTCTCTTTCCGACTGAAC
CCCAAGAACATCCTCTCCATCTCTCTCTGCTTCCAATGGCGAAGGGCGGGCTGAGCAGCAAGCTCAAGTGCATGATCAGG
CGGTGGCACTCGTCGAGCCGGATCTCCCGCACGCCCTCGGCGGTGTCGCACGG------CGGCGGCGAGGAGGAGGACCC
GTGGGGCCGCGGCGTCGGCGGG---GGCGGGGGCGGCGCGGCGTCGTTCCACGGCGCCGACGGCGTGCCCCCGGGCCTCC
ACCCGGTGTACGTCGGCAAGTCGCGCCGCCGCTACCTCATCGCCGCCGACCTCGTCTGCCACCCGCTGTTCCAGAACCTC
GTGGACCGCTCGGGCGGCGGCGTGGGCGGCGACGGCGCCGGCGGCACCATCATCGGCTGCGAGGTGGTGCTGTTCGAGCA
CCTCCTCTGGATGCTGGAGAACGCGGACCCGCAGCCCGAGTCGCTGGACGAGCTCGTCGAGTACTACGCGTGTTGACCGG
-C----CGGCCGGCCGGCCAACCGCCCACATCATCCGCAGCTGGCGGCGCCAAGCTCGCCAGAGTTGGTGGCCTGGCCTC
TATAGGGGG-CAATTTGGTAATTCTTTCTTTAAGCTAGGGGTAGAGTTGTAATATAATACGCCTGTCAAGCGTGCACCGA
GGGCGACGTGAGTGGGTAATTAAGTTGTGTGTG--------GAGATTTATTTAACCTTGAGGCGTTCGTGGTAATTCGGG
GATTAGCTTCGCAATTACCGCGCGCCCAAGAATGATGCTGTTCTGGGGCTATTAATCAATTTCCCTAATGATTGGTGTGG
TAGCTTCTTTTATTCTTCTTATTAATCATTTTCTCTTTTCCTCTCTTCTTTCAATAAGATATG-TATAAGATGTAGGGAT
CAATGCATCCACGTACATTTCCATCG---------GTGTAT-------------GCAAGCTCATCTCCTTCTGGGATCGA
TACATTCCTTTCGAATCTCTTTCCTGAGATTTCTGGAAATGTCATCTACTAGTAGATATTATTATTTTTGGCTGGTAGTT
GAAGGCATTTTCACCAGCCGACAAAACTGCTACAGACAAGATGTCATTGACAGGAGAAAATCAAGATGCAGTGCTTCATC
TTCTTTCAACAAAGTAGCTGGTAGCGGAATGTCAAGACAGAGTTGATGTGA--GCACAGCTGAATCTCTTCCGGGGCCAA
GAGTAACAAAAACCCAATCAAGAATGCTGAAGGTTGGCGTTGGTGGGACAATGATCTCGTGCAGTTTACAAAGTCCCACA
GAGACAAGACACGATAAAGCCATTTACATTCGCGTTCCATCCACAGCGCCTATCTCCACCGTCCAAAGCTGCTCAAGATC
GAAAGATGCATGTGAGAAAGCTGTGGGTCGTTCAAAAACAAGCCAAAAAAGGCAAC-TTGAATCAAACTTTCTCCAAACT
TGGCCATCAATTAGCCATCATGCGCATGCACAAAGCAACACGCACAGCCTAGTCGCCGAAGCA--GCACCAAGACCCATC
AAACACTGGTCGCCATGC-AAATTCTAATCTAATCCAATCAGAGGGTTTTAAGTAAGTGGAAGTTCGGTGCAGAGTCAGA
TGATGGGTGC-TACGTACGCGCGTCCAATTCCTGGCTGTCATGGAG--CTTCCTTTTCTCTTCCCTTTGCATGGTTCGTA
TTTGCATGCATGC--------ACGCATGCTTA---GTAACGGGCCTGCGCTTAATCCGGTTGATTAATT--GTCTGGAGA
GGATGATGACAACTTTGGACAACTTTTGGGCATGTATTTGGACGTACTAACCAGGGCCATTTAAGTTGGT
>chr5B_394
AAAGTATG------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
AAAACAAAATTTAATTCAAACTTTTATTCAAAAGATATAAAAGATTGAAAATCAAAAGCCGAAAGAAAAAG-CACGTGCG
AGGGACTCGGTA--CCCGCACTTGCGTGCCCCAAATCCGCT-----------------------GATGCACTTCTAC---
-TCACGGACAAGTTCTACAGCCATTTTTGTGGCCTCGTGCAAGTGGCCGGTGACGAGCATATATGGCTTAAATCT-----
---AAATGTGAC----ATATACCAGCTCGGCCTACTACCTGACGACCGGCATGTCACGGTCCTTGCAAATTCACAGTCGG
GCCTGCGCTGCCGTGCTGCATGCCAACCGGAGAGAAAGAGACGGACGGACGGAC----AGATACCTCGCACCGTCACATA
CGGAGCATCACCACTTCCGGACGGGGCGGCGGCCAGTTGCCTCCCCACTGTTCTCCTCT---------------------
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---------------------------------CCTCTCCTGCAGGTTCGGTTTTACCATCAATCACCATGGCCAT----
--GCCATGCACCGTCCCCGACACCTTGACCCTCGCCCTCCCACCGGTCTCCATCCCGCCAGTCCACAGCCGGCCTCTCCT
CCTCCCCC--TATATAACCTCTCGCCACCTCCCCGACCCTGCAAGTCATCCCTACGCCTCCTCTCTCTTTCCAGCTGAAC
CCAAGACCATCCATC---------CTCTGCTTTCAATGGCCAGGGGCGGGCTGAGCAGCAAGCTCAAGTGCATGATCAGG
CGGTGGCACTCATCGAGCCGGATCTCGCGCACGCCCTCGGCGGTGTCACACG---------GCGGCGAGGAGGAGGACCC
GTGGGGCCGCGGCGTCGGCGGCGGCGGCGGGGGCGGGGCGGCCTCGTTCCACGGCGCGGACGGCGTGCCCCCGGGCCTCC
ACCCGGTCTACGTCGGCAAGTCGCGCCGCCGCTACCTCATCGCCGCCGACCTCGTCTGCCACCCGCTGTTCCAGAACCTC
GTGGACCGCTCGGGTGGCGGCGTGGGCGGCGACGGCGCCGGCGGCACCATCATCGGCTGCGAGGTGGTGCTGTTCGAGCA
CCTCCTCTGGATGCTGGAGAACGCGGACCCGCAGCCCGAGTCGCTGGACGAGCTCGTCGAGTACTACGCGTGTTGACCCG
AC----CGGCCGGCCGGCCAACCGCCCACATCATCCGCAGCTGGCA---CCAAGCTCGCCAGAGTTGGTGGCCTGGCTTC
CATAGGGGGGCAATTTGGTAATCATTTCTTTCAGCTAGGGGTAGAGTTGTAATATAAAACGCTTATCGAGCGGCGA----
----------AGTGAGTAATTAAGCTGTGTGTGTGTGTGTGGAGATTTATTTAACCTTGAGGCGTTCGTGGTAATTCGGG
GAGTAGCTTTGCAATTACCGCGCGCCCAAGAATGATGCTGTTTTGGGGCTATTAACCAATTTCCCTAATGATTGGCGTGG
TAGCTTCTTTTATTCTTCTTATTAATCATTTTCCCTTTTCCTCTCTTCTTTCAATAAGATATACTATAAGATGTAGGGAT
CAATGCATCCACGTACATTTCCATCTGTGTATAAAGTGCAT-------------GCAAGCTCATTTCCCTCTGGGATCAA
TACATTATTTTTAAATTTCTGGTTTGAG---------------------TAGTAGATATTATTATTCTTGGCTGGTAGTT
GAAGGCATTTTCACCAGCAGACAAAACTGCTACAGATAAGATGTCATTGACAGGAGAAAATCAAGATGCAGTGCTTCATC
TTCTTTCA-CAAAGTAGCTGGTAGTAGAATTTCAAGGCAGACTTGATGTGA--GCATAGCTGAATCTCTTCCTGGGCCAA
AAGTAACAAAACCCCAATCAAGAAAGCTTAATGCTGGCGTTGGTGGGACAATAATCTCGTGCGGTTTACAAAGTCCCACA
AAGACGAGACAGCTATGGGTC-----------------------------------------------------------
-------------------------GGTCGTTCAAAAACAAGCCAAAAAAGGCAAC-TTGGATCAAACTTTCTCCAAACT
TGGCCATCAATTGGCCATCATGCGCATGCATAAAGCAACACGTACAGCCTAGTCGCCGAAGC--CGCACCAAGACTCATC
AAAGACTGGTCGCCATGCCATGCA-TATTCTAATCCAATCACAGGGTTTTAAGTAAGTGCAAGTTTGGTGCACAGTCAGA
TGATGG----GTACGTACGCGCGTCCAATTTCTGGCTGTCATGGTG--CTTCTTTTTCTCTTCCTTTTGCATGGTTCGTA
TTTGCATGCATGCATGCACGCACGCATGCTTACTGGTAACGGGCCTGCGCTTAATCCGGTTGATTAATT--GTCTGG---
--ATGATGACAACTTTGGACAACTTTTGGGCATGTATTTGGACGTACTAACCAGGGCCATTTAAGTTGGT
>SNPs
SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S----S--SS-S--S--S------S-S----
-----------------S----S--S--------S--------SS------------S----------------------
-S--------------------------S----------S---------S-S---S-----S---------------SSS
S---------------S----------------------------------------------SSSSS---SSSSSSSSS
SSS--S--S---------------------------------------------------------S-------------
-----------------------------------------------------------------S--------------
-------S------------------------------------------------------------------------
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-------------------------------------------S------------------------------S-SSSS
SS------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
S-----------S----SS-S-----------------------------------------------------------
-------------------------------------------S---------SSSSSS---------------------
------------S------------------------------------------------S------------------
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------S-------------------------------------------------------------------------
--SSSS--------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
-------------------------------------------S------------------------------------
--S---------S-------------------S-----------------------------------------------
-------------------------------S-------------S----------------------------------
-------------------S---------------------SSSSSSSSSSSSS------S-----------------S-
------------------S-------------------------S---------------------------S-------
-----------------------S------------------------SSSSSSSSSSSSSS--S-SSSSSS--------
-----------------------------------S--------------SSS------S--S---S------------S
-S---S-----S-------------------------------S----------------------------S------S
-------------S------------------------------------------------------------------
--------------------------------------------------------S----S------------------
--------------S--------------------------------------SSSSSSSS--S----------------
-------S----------------------------S-------------------------------------------
-------SS------------------------------------SSS------------------------S-------
--------------SS-------------------S-----------S----------S----S----SSS---------
----------------------------------------------------------------------
>forward_87
-------------------------------------------------------------------TGAATGCCACGTG
TCATCCA-------------------------------------------------------------------------
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>reverse_3088
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-----------------------------------------------AGTGCATGCAAGCCCATTTC-------------
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