Multiple sequence alignment - TraesCS5A01G191400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G191400 chr5A 100.000 2621 0 0 1 2621 395806742 395804122 0.000000e+00 4841.0
1 TraesCS5A01G191400 chr5D 89.995 1899 103 40 342 2197 302104179 302106033 0.000000e+00 2374.0
2 TraesCS5A01G191400 chr5D 85.870 368 40 3 2253 2618 302106413 302106770 5.290000e-102 381.0
3 TraesCS5A01G191400 chr5D 87.698 252 30 1 2371 2621 302160663 302160914 2.550000e-75 292.0
4 TraesCS5A01G191400 chr5D 88.757 169 10 6 1 168 302103583 302103743 5.720000e-47 198.0
5 TraesCS5A01G191400 chr5D 88.764 89 1 3 178 257 302104050 302104138 1.660000e-17 100.0
6 TraesCS5A01G191400 chr5B 90.760 855 41 15 1261 2094 345138664 345139501 0.000000e+00 1107.0
7 TraesCS5A01G191400 chr5B 87.416 890 53 17 342 1214 345137738 345138585 0.000000e+00 968.0
8 TraesCS5A01G191400 chr5B 91.765 340 12 8 2250 2573 345139934 345140273 2.380000e-125 459.0
9 TraesCS5A01G191400 chr5B 89.697 165 12 2 1 165 345137124 345137283 3.420000e-49 206.0
10 TraesCS5A01G191400 chr5B 91.525 118 9 1 2082 2198 345139552 345139669 7.510000e-36 161.0
11 TraesCS5A01G191400 chr5B 95.000 60 1 2 2562 2621 345323548 345323605 2.780000e-15 93.5
12 TraesCS5A01G191400 chr3A 81.564 179 28 2 2444 2621 430779995 430780169 2.720000e-30 143.0
13 TraesCS5A01G191400 chr3A 95.918 49 2 0 265 313 669971651 669971699 2.160000e-11 80.5
14 TraesCS5A01G191400 chr3A 95.918 49 2 0 265 313 669984618 669984570 2.160000e-11 80.5
15 TraesCS5A01G191400 chr6B 81.513 119 20 2 1400 1517 38971592 38971709 2.150000e-16 97.1
16 TraesCS5A01G191400 chr3D 100.000 45 0 0 269 313 438057258 438057302 1.670000e-12 84.2
17 TraesCS5A01G191400 chr2A 100.000 45 0 0 269 313 61476106 61476150 1.670000e-12 84.2
18 TraesCS5A01G191400 chr2A 100.000 45 0 0 269 313 768570931 768570887 1.670000e-12 84.2
19 TraesCS5A01G191400 chr2A 95.918 49 2 0 265 313 705543113 705543161 2.160000e-11 80.5
20 TraesCS5A01G191400 chr2A 95.918 49 2 0 265 313 715386300 715386348 2.160000e-11 80.5
21 TraesCS5A01G191400 chr7A 95.918 49 2 0 265 313 206907353 206907305 2.160000e-11 80.5
22 TraesCS5A01G191400 chr7A 95.918 49 2 0 265 313 311306003 311306051 2.160000e-11 80.5
23 TraesCS5A01G191400 chr1D 97.674 43 1 0 1580 1622 191861276 191861318 1.010000e-09 75.0
24 TraesCS5A01G191400 chr1B 97.674 43 1 0 1580 1622 265648393 265648435 1.010000e-09 75.0
25 TraesCS5A01G191400 chr1A 97.674 43 1 0 1580 1622 237746074 237746116 1.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G191400 chr5A 395804122 395806742 2620 True 4841.00 4841 100.0000 1 2621 1 chr5A.!!$R1 2620
1 TraesCS5A01G191400 chr5D 302103583 302106770 3187 False 763.25 2374 88.3465 1 2618 4 chr5D.!!$F2 2617
2 TraesCS5A01G191400 chr5B 345137124 345140273 3149 False 580.20 1107 90.2326 1 2573 5 chr5B.!!$F2 2572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 904 0.110192 GCAAAAGGTACAGTGCGAGC 60.11 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2527 3375 0.035458 GGAGTTGAGGTGGTGACCAG 59.965 60.0 3.58 0.0 45.98 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.593597 AACGCAACGAGTACCAATAATG 57.406 40.909 0.00 0.00 0.00 1.90
108 109 2.128771 GCATGGCCAAGAGGAGTTTA 57.871 50.000 10.96 0.00 36.89 2.01
112 113 4.678840 GCATGGCCAAGAGGAGTTTATTTG 60.679 45.833 10.96 0.00 36.89 2.32
113 114 2.825532 TGGCCAAGAGGAGTTTATTTGC 59.174 45.455 0.61 0.00 36.89 3.68
143 144 4.082571 GGTTTCAGTGAATTGAGGGACATG 60.083 45.833 6.36 0.00 0.00 3.21
165 166 5.756195 GCTGTATGCAAGATGGAACATAA 57.244 39.130 0.00 0.00 42.73 1.90
166 167 5.755813 GCTGTATGCAAGATGGAACATAAG 58.244 41.667 0.00 0.00 42.73 1.73
169 170 8.811403 GCTGTATGCAAGATGGAACATAAGGAA 61.811 40.741 0.00 0.00 42.73 3.36
257 580 7.639945 AGTTGCTGACAAATGTTTAAGTAGAC 58.360 34.615 0.00 0.00 37.58 2.59
258 581 6.223138 TGCTGACAAATGTTTAAGTAGACG 57.777 37.500 0.00 0.00 0.00 4.18
259 582 5.986741 TGCTGACAAATGTTTAAGTAGACGA 59.013 36.000 0.00 0.00 0.00 4.20
261 584 6.442487 TGACAAATGTTTAAGTAGACGACG 57.558 37.500 0.00 0.00 0.00 5.12
262 585 6.207928 TGACAAATGTTTAAGTAGACGACGA 58.792 36.000 0.00 0.00 0.00 4.20
263 586 6.361481 TGACAAATGTTTAAGTAGACGACGAG 59.639 38.462 0.00 0.00 0.00 4.18
264 587 6.211515 ACAAATGTTTAAGTAGACGACGAGT 58.788 36.000 0.00 0.00 0.00 4.18
265 588 7.362662 ACAAATGTTTAAGTAGACGACGAGTA 58.637 34.615 0.00 0.00 0.00 2.59
266 589 8.025445 ACAAATGTTTAAGTAGACGACGAGTAT 58.975 33.333 0.00 0.00 0.00 2.12
269 592 8.654230 ATGTTTAAGTAGACGACGAGTATCTA 57.346 34.615 0.00 0.00 0.00 1.98
270 593 7.899974 TGTTTAAGTAGACGACGAGTATCTAC 58.100 38.462 12.88 12.88 43.41 2.59
271 594 6.739900 TTAAGTAGACGACGAGTATCTACG 57.260 41.667 14.19 0.00 46.23 3.51
272 595 4.300189 AGTAGACGACGAGTATCTACGT 57.700 45.455 14.19 0.00 46.23 3.57
273 596 5.425577 AGTAGACGACGAGTATCTACGTA 57.574 43.478 14.19 0.00 46.23 3.57
274 597 5.448438 AGTAGACGACGAGTATCTACGTAG 58.552 45.833 16.73 16.73 46.23 3.51
278 601 3.794028 ACGACGAGTATCTACGTAGTCAC 59.206 47.826 21.53 18.62 42.41 3.67
279 602 4.041049 CGACGAGTATCTACGTAGTCACT 58.959 47.826 22.93 22.93 43.93 3.41
280 603 4.502282 CGACGAGTATCTACGTAGTCACTT 59.498 45.833 21.53 11.49 43.93 3.16
281 604 5.554138 CGACGAGTATCTACGTAGTCACTTG 60.554 48.000 27.18 27.18 43.93 3.16
283 606 5.641209 ACGAGTATCTACGTAGTCACTTGTT 59.359 40.000 28.00 19.41 43.93 2.83
284 607 5.958372 CGAGTATCTACGTAGTCACTTGTTG 59.042 44.000 21.53 12.30 43.93 3.33
285 608 6.183360 CGAGTATCTACGTAGTCACTTGTTGA 60.183 42.308 21.53 0.00 43.93 3.18
286 609 7.444629 AGTATCTACGTAGTCACTTGTTGAA 57.555 36.000 21.53 0.00 43.93 2.69
287 610 7.879070 AGTATCTACGTAGTCACTTGTTGAAA 58.121 34.615 21.53 0.00 43.93 2.69
288 611 8.521176 AGTATCTACGTAGTCACTTGTTGAAAT 58.479 33.333 21.53 6.20 43.93 2.17
289 612 7.582435 ATCTACGTAGTCACTTGTTGAAATG 57.418 36.000 21.53 0.00 43.93 2.32
290 613 4.468095 ACGTAGTCACTTGTTGAAATGC 57.532 40.909 0.00 0.00 29.74 3.56
291 614 3.250040 ACGTAGTCACTTGTTGAAATGCC 59.750 43.478 0.00 0.00 29.74 4.40
292 615 3.498397 CGTAGTCACTTGTTGAAATGCCT 59.502 43.478 0.00 0.00 35.39 4.75
294 617 5.163953 CGTAGTCACTTGTTGAAATGCCTAG 60.164 44.000 0.00 0.00 35.39 3.02
295 618 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
297 620 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
298 621 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
299 622 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
300 623 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
301 624 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
302 625 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
303 626 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
304 627 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
305 628 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
306 629 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
307 630 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
308 631 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
309 632 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
311 634 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
312 635 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
313 636 8.090788 TGCCTAGAAAGACAAGTATTTAGGAT 57.909 34.615 11.40 0.00 26.70 3.24
314 637 9.209048 TGCCTAGAAAGACAAGTATTTAGGATA 57.791 33.333 11.40 0.52 26.70 2.59
319 642 9.905713 AGAAAGACAAGTATTTAGGATATTGCA 57.094 29.630 0.00 0.00 0.00 4.08
322 645 9.851686 AAGACAAGTATTTAGGATATTGCATGA 57.148 29.630 0.00 0.00 0.00 3.07
323 646 9.851686 AGACAAGTATTTAGGATATTGCATGAA 57.148 29.630 0.00 0.00 0.00 2.57
325 648 9.851686 ACAAGTATTTAGGATATTGCATGAAGA 57.148 29.630 0.00 0.00 0.00 2.87
333 656 9.905713 TTAGGATATTGCATGAAGAAAACTAGT 57.094 29.630 0.00 0.00 0.00 2.57
334 657 8.218338 AGGATATTGCATGAAGAAAACTAGTG 57.782 34.615 0.00 0.00 0.00 2.74
335 658 7.831193 AGGATATTGCATGAAGAAAACTAGTGT 59.169 33.333 0.00 0.00 0.00 3.55
336 659 9.109393 GGATATTGCATGAAGAAAACTAGTGTA 57.891 33.333 0.00 0.00 0.00 2.90
364 688 3.197790 AAGCTAGCCATGCACGCG 61.198 61.111 12.13 3.53 32.80 6.01
375 699 0.729116 ATGCACGCGAGAAGAAATGG 59.271 50.000 15.93 0.00 0.00 3.16
380 704 2.283617 CACGCGAGAAGAAATGGATCAG 59.716 50.000 15.93 0.00 0.00 2.90
439 776 0.604578 CGGGGGAGAAACGTTACTGA 59.395 55.000 0.00 0.00 0.00 3.41
457 794 1.740585 TGATAACAATGGCCGGTTTCG 59.259 47.619 11.80 0.00 0.00 3.46
478 815 0.603975 GCTCCCGGCCTAGCTTTATG 60.604 60.000 12.83 0.00 35.80 1.90
483 820 0.685097 CGGCCTAGCTTTATGCCCTA 59.315 55.000 0.00 0.00 44.23 3.53
484 821 1.279271 CGGCCTAGCTTTATGCCCTAT 59.721 52.381 0.00 0.00 44.23 2.57
487 824 3.009584 GGCCTAGCTTTATGCCCTATCTT 59.990 47.826 0.00 0.00 44.23 2.40
488 825 4.507512 GGCCTAGCTTTATGCCCTATCTTT 60.508 45.833 0.00 0.00 44.23 2.52
489 826 5.280521 GGCCTAGCTTTATGCCCTATCTTTA 60.281 44.000 0.00 0.00 44.23 1.85
490 827 5.644206 GCCTAGCTTTATGCCCTATCTTTAC 59.356 44.000 0.00 0.00 44.23 2.01
491 828 6.744339 GCCTAGCTTTATGCCCTATCTTTACA 60.744 42.308 0.00 0.00 44.23 2.41
499 836 9.914834 TTTATGCCCTATCTTTACATTACAAGT 57.085 29.630 0.00 0.00 0.00 3.16
502 839 6.069905 TGCCCTATCTTTACATTACAAGTCCA 60.070 38.462 0.00 0.00 0.00 4.02
525 862 8.094548 TCCATATATATTTCTGAAGTCGGTTGG 58.905 37.037 0.00 0.00 0.00 3.77
561 901 1.225855 TCAGCAAAAGGTACAGTGCG 58.774 50.000 0.00 0.00 41.90 5.34
562 902 1.202592 TCAGCAAAAGGTACAGTGCGA 60.203 47.619 0.00 0.00 41.90 5.10
563 903 1.195448 CAGCAAAAGGTACAGTGCGAG 59.805 52.381 0.00 0.00 41.90 5.03
564 904 0.110192 GCAAAAGGTACAGTGCGAGC 60.110 55.000 0.00 0.00 0.00 5.03
565 905 1.225855 CAAAAGGTACAGTGCGAGCA 58.774 50.000 0.00 0.00 0.00 4.26
566 906 1.069906 CAAAAGGTACAGTGCGAGCAC 60.070 52.381 19.45 19.45 46.50 4.40
574 914 3.660111 GTGCGAGCACCAACCACC 61.660 66.667 16.66 0.00 40.79 4.61
575 915 4.182433 TGCGAGCACCAACCACCA 62.182 61.111 0.00 0.00 0.00 4.17
576 916 2.904866 GCGAGCACCAACCACCAA 60.905 61.111 0.00 0.00 0.00 3.67
577 917 2.908073 GCGAGCACCAACCACCAAG 61.908 63.158 0.00 0.00 0.00 3.61
578 918 2.260869 CGAGCACCAACCACCAAGG 61.261 63.158 0.00 0.00 45.67 3.61
579 919 2.521708 AGCACCAACCACCAAGGC 60.522 61.111 0.00 0.00 43.14 4.35
580 920 2.837291 GCACCAACCACCAAGGCA 60.837 61.111 0.00 0.00 43.14 4.75
581 921 2.859981 GCACCAACCACCAAGGCAG 61.860 63.158 0.00 0.00 43.14 4.85
590 930 2.436646 CCAAGGCAGGCAGGTACG 60.437 66.667 0.00 0.00 0.00 3.67
653 993 1.906105 AAAATACGGAGGCGGGCAGA 61.906 55.000 3.78 0.00 0.00 4.26
730 1070 1.885871 GCAGGCAGCTTTGGTAAGG 59.114 57.895 0.00 0.00 41.15 2.69
731 1071 1.885871 CAGGCAGCTTTGGTAAGGC 59.114 57.895 0.00 0.00 31.76 4.35
734 1076 0.969149 GGCAGCTTTGGTAAGGCTTT 59.031 50.000 4.45 0.00 31.76 3.51
738 1080 1.615392 AGCTTTGGTAAGGCTTTGCTG 59.385 47.619 4.45 0.00 31.76 4.41
742 1084 1.068948 TGGTAAGGCTTTGCTGGGTA 58.931 50.000 4.45 0.00 0.00 3.69
837 1183 3.007290 TCTTGTGTCCATCAAGTCTCCAG 59.993 47.826 5.74 0.00 41.78 3.86
847 1193 2.842496 TCAAGTCTCCAGCCATCTCATT 59.158 45.455 0.00 0.00 0.00 2.57
849 1195 3.278668 AGTCTCCAGCCATCTCATTTG 57.721 47.619 0.00 0.00 0.00 2.32
864 1210 5.560724 TCTCATTTGTAGCTAAGCTTTGGT 58.439 37.500 16.42 16.42 40.44 3.67
914 1260 4.020751 TGACCAACTGATTCAGGAAGAGAG 60.021 45.833 17.66 2.42 35.51 3.20
920 1266 2.168106 TGATTCAGGAAGAGAGCAGAGC 59.832 50.000 0.00 0.00 0.00 4.09
973 1323 4.096382 TGACTCTGTTTCTTGTTGCTTTCC 59.904 41.667 0.00 0.00 0.00 3.13
975 1325 4.706962 ACTCTGTTTCTTGTTGCTTTCCTT 59.293 37.500 0.00 0.00 0.00 3.36
978 1328 4.743493 TGTTTCTTGTTGCTTTCCTTGAC 58.257 39.130 0.00 0.00 0.00 3.18
980 1330 5.167845 GTTTCTTGTTGCTTTCCTTGACAA 58.832 37.500 0.00 0.00 0.00 3.18
992 1342 5.514274 TTCCTTGACAAGACAAATTGGAC 57.486 39.130 16.99 0.00 34.36 4.02
1159 1509 3.068691 TCAGGAACGCCCTCTCCG 61.069 66.667 0.00 0.00 45.60 4.63
1248 1598 6.148948 TGACGTGCTTTCAAAAGAATTATGG 58.851 36.000 6.67 0.00 38.28 2.74
1249 1599 4.923281 ACGTGCTTTCAAAAGAATTATGGC 59.077 37.500 6.67 0.00 38.28 4.40
1250 1600 4.327087 CGTGCTTTCAAAAGAATTATGGCC 59.673 41.667 6.67 0.00 38.28 5.36
1251 1601 5.237048 GTGCTTTCAAAAGAATTATGGCCA 58.763 37.500 8.56 8.56 38.28 5.36
1252 1602 5.700373 GTGCTTTCAAAAGAATTATGGCCAA 59.300 36.000 10.96 0.00 38.28 4.52
1253 1603 5.933463 TGCTTTCAAAAGAATTATGGCCAAG 59.067 36.000 10.96 0.00 38.28 3.61
1254 1604 6.165577 GCTTTCAAAAGAATTATGGCCAAGA 58.834 36.000 10.96 0.42 38.28 3.02
1287 1704 4.502087 GCTGGAAAACTGAGAGGCATTTTT 60.502 41.667 0.00 0.00 40.65 1.94
1288 1705 4.947645 TGGAAAACTGAGAGGCATTTTTG 58.052 39.130 0.00 0.00 38.84 2.44
1290 1707 5.104982 TGGAAAACTGAGAGGCATTTTTGTT 60.105 36.000 0.00 0.00 38.84 2.83
1291 1708 5.234972 GGAAAACTGAGAGGCATTTTTGTTG 59.765 40.000 0.00 0.00 38.84 3.33
1292 1709 5.343307 AAACTGAGAGGCATTTTTGTTGT 57.657 34.783 0.00 0.00 0.00 3.32
1294 1711 4.685924 ACTGAGAGGCATTTTTGTTGTTG 58.314 39.130 0.00 0.00 0.00 3.33
1296 1713 4.431809 TGAGAGGCATTTTTGTTGTTGTG 58.568 39.130 0.00 0.00 0.00 3.33
1297 1714 3.197265 AGAGGCATTTTTGTTGTTGTGC 58.803 40.909 0.00 0.00 0.00 4.57
1298 1715 3.118665 AGAGGCATTTTTGTTGTTGTGCT 60.119 39.130 0.00 0.00 33.38 4.40
1299 1716 3.608796 AGGCATTTTTGTTGTTGTGCTT 58.391 36.364 0.00 0.00 33.38 3.91
1300 1717 3.374678 AGGCATTTTTGTTGTTGTGCTTG 59.625 39.130 0.00 0.00 33.38 4.01
1301 1718 3.100089 GCATTTTTGTTGTTGTGCTTGC 58.900 40.909 0.00 0.00 0.00 4.01
1636 2056 1.009389 GTGAGAACCTCCGTGAAGCG 61.009 60.000 0.00 0.00 40.95 4.68
1654 2074 1.484227 CGAGAGACGTCGATCGAGCT 61.484 60.000 29.64 15.90 42.85 4.09
1727 2147 1.226379 GTGTATGGCATGCGTGTGC 60.226 57.895 12.44 3.82 44.31 4.57
1747 2171 9.051027 CGTGTGCTGTTTAGATTGTAAATTAAG 57.949 33.333 0.00 0.00 0.00 1.85
1772 2196 8.104566 AGAGGAGAGTAAAGAGCGTATATATGT 58.895 37.037 3.92 0.00 0.00 2.29
1773 2197 8.638629 AGGAGAGTAAAGAGCGTATATATGTT 57.361 34.615 3.92 0.00 0.00 2.71
1774 2198 8.732531 AGGAGAGTAAAGAGCGTATATATGTTC 58.267 37.037 10.04 10.04 0.00 3.18
1807 2231 6.432783 TCTTTGTTTTTCAGGTTTCTGTCTGA 59.567 34.615 0.00 0.00 41.59 3.27
1830 2254 3.482722 CATGTGTGCTGGAATCTCAAC 57.517 47.619 0.00 0.00 0.00 3.18
1886 2323 9.663904 TTCTTTTCGTAGATTGTTGATTTTGAG 57.336 29.630 0.00 0.00 35.04 3.02
1889 2326 6.741992 TCGTAGATTGTTGATTTTGAGCAT 57.258 33.333 0.00 0.00 0.00 3.79
1917 2354 3.629438 TCGAAGACGTTCACATACACA 57.371 42.857 0.00 0.00 40.69 3.72
1940 2377 9.213819 CACACACAATTATTAGATCGTTGATTG 57.786 33.333 9.02 9.02 0.00 2.67
1955 2392 6.457355 TCGTTGATTGCTTACTGTAACCTAA 58.543 36.000 0.00 0.00 0.00 2.69
1980 2417 4.100344 AGAACTTTAACCACCGGCAATTTT 59.900 37.500 0.00 0.00 0.00 1.82
1993 2430 5.067283 ACCGGCAATTTTACCAGATCATAAC 59.933 40.000 0.00 0.00 0.00 1.89
2065 2505 8.096414 CCAGAAACAACTAAATGGATGGATTTT 58.904 33.333 0.00 0.00 0.00 1.82
2079 2519 6.030228 GGATGGATTTTCGCAGAAACTAAAG 58.970 40.000 3.71 0.00 45.90 1.85
2118 2624 5.994054 CCCTATGACTATGATTGGAGTTGTG 59.006 44.000 0.00 0.00 0.00 3.33
2121 2627 4.002982 TGACTATGATTGGAGTTGTGTGC 58.997 43.478 0.00 0.00 0.00 4.57
2142 2648 1.525941 TGTACCTTTTTAGTGCGCCC 58.474 50.000 4.18 0.00 0.00 6.13
2220 3001 1.975363 GAGCAGAACGCAGTCATGGC 61.975 60.000 0.00 0.00 45.00 4.40
2234 3015 1.300853 ATGGCGTTTGGTTGCAAGC 60.301 52.632 21.51 21.51 0.00 4.01
2257 3038 5.163622 GCCTGTTCTAAGATAATGCAAAGCA 60.164 40.000 0.00 0.00 44.86 3.91
2464 3312 3.626028 AACATCCAACGCAAAAGTCTC 57.374 42.857 0.00 0.00 0.00 3.36
2547 3395 0.692756 TGGTCACCACCTCAACTCCA 60.693 55.000 0.00 0.00 44.17 3.86
2612 3460 0.539986 TTGAAGGCGATGAGGTACCC 59.460 55.000 8.74 0.32 0.00 3.69
2614 3462 1.673808 GAAGGCGATGAGGTACCCGT 61.674 60.000 8.74 1.11 0.00 5.28
2615 3463 1.673808 AAGGCGATGAGGTACCCGTC 61.674 60.000 8.74 6.53 0.00 4.79
2616 3464 2.125961 GGCGATGAGGTACCCGTCT 61.126 63.158 8.74 0.00 0.00 4.18
2618 3466 0.527817 GCGATGAGGTACCCGTCTTG 60.528 60.000 8.74 1.44 0.00 3.02
2619 3467 1.100510 CGATGAGGTACCCGTCTTGA 58.899 55.000 8.74 0.00 0.00 3.02
2620 3468 1.681793 CGATGAGGTACCCGTCTTGAT 59.318 52.381 8.74 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.693104 TCGTTGCGTTTAGGATAACCATATC 59.307 40.000 0.00 0.00 38.94 1.63
20 21 4.814234 TCCATCATTATTGGTACTCGTTGC 59.186 41.667 0.00 0.00 35.64 4.17
38 39 4.989797 CACTCATTGCTCATAGACTCCATC 59.010 45.833 0.00 0.00 0.00 3.51
103 104 4.410555 TGAAACCTTTGGGGCAAATAAACT 59.589 37.500 0.00 0.00 39.10 2.66
108 109 2.104622 CACTGAAACCTTTGGGGCAAAT 59.895 45.455 0.00 0.00 39.10 2.32
112 113 1.408969 TTCACTGAAACCTTTGGGGC 58.591 50.000 0.00 0.00 39.10 5.80
113 114 3.640967 TCAATTCACTGAAACCTTTGGGG 59.359 43.478 0.00 0.00 41.89 4.96
143 144 5.278169 CCTTATGTTCCATCTTGCATACAGC 60.278 44.000 0.00 0.00 45.96 4.40
156 157 4.148079 TGCATTGTGTTCCTTATGTTCCA 58.852 39.130 0.00 0.00 0.00 3.53
165 166 3.331150 CATTGCATTGCATTGTGTTCCT 58.669 40.909 20.22 0.00 38.76 3.36
166 167 2.159626 GCATTGCATTGCATTGTGTTCC 60.160 45.455 25.84 11.68 40.58 3.62
222 545 0.605589 GTCAGCAACTTTACGGGGCT 60.606 55.000 0.00 0.00 34.64 5.19
226 549 4.223320 ACATTTGTCAGCAACTTTACGG 57.777 40.909 0.00 0.00 33.82 4.02
257 580 4.041049 AGTGACTACGTAGATACTCGTCG 58.959 47.826 28.74 0.00 40.70 5.12
258 581 5.290643 ACAAGTGACTACGTAGATACTCGTC 59.709 44.000 28.74 14.67 40.70 4.20
259 582 5.174395 ACAAGTGACTACGTAGATACTCGT 58.826 41.667 28.74 21.26 42.82 4.18
261 584 7.069852 TCAACAAGTGACTACGTAGATACTC 57.930 40.000 28.74 15.68 0.00 2.59
262 585 7.444629 TTCAACAAGTGACTACGTAGATACT 57.555 36.000 28.74 24.68 35.39 2.12
263 586 8.584600 CATTTCAACAAGTGACTACGTAGATAC 58.415 37.037 28.74 23.09 35.39 2.24
264 587 7.274904 GCATTTCAACAAGTGACTACGTAGATA 59.725 37.037 28.74 13.72 35.39 1.98
265 588 6.090898 GCATTTCAACAAGTGACTACGTAGAT 59.909 38.462 28.74 12.98 35.39 1.98
266 589 5.404366 GCATTTCAACAAGTGACTACGTAGA 59.596 40.000 28.74 4.61 35.39 2.59
269 592 3.250040 GGCATTTCAACAAGTGACTACGT 59.750 43.478 0.00 0.00 35.39 3.57
270 593 3.498397 AGGCATTTCAACAAGTGACTACG 59.502 43.478 0.00 0.00 35.84 3.51
271 594 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
272 595 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
273 596 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
274 597 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
278 601 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
279 602 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
280 603 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
281 604 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
283 606 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
285 608 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
286 609 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
287 610 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
288 611 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
297 620 9.851686 TTCATGCAATATCCTAAATACTTGTCT 57.148 29.630 0.00 0.00 0.00 3.41
299 622 9.851686 TCTTCATGCAATATCCTAAATACTTGT 57.148 29.630 0.00 0.00 0.00 3.16
307 630 9.905713 ACTAGTTTTCTTCATGCAATATCCTAA 57.094 29.630 0.00 0.00 0.00 2.69
308 631 9.330063 CACTAGTTTTCTTCATGCAATATCCTA 57.670 33.333 0.00 0.00 0.00 2.94
309 632 7.831193 ACACTAGTTTTCTTCATGCAATATCCT 59.169 33.333 0.00 0.00 0.00 3.24
310 633 7.989826 ACACTAGTTTTCTTCATGCAATATCC 58.010 34.615 0.00 0.00 0.00 2.59
313 636 9.502091 AGTTACACTAGTTTTCTTCATGCAATA 57.498 29.630 0.00 0.00 0.00 1.90
314 637 8.292448 CAGTTACACTAGTTTTCTTCATGCAAT 58.708 33.333 0.00 0.00 0.00 3.56
315 638 7.497579 TCAGTTACACTAGTTTTCTTCATGCAA 59.502 33.333 0.00 0.00 0.00 4.08
316 639 6.989759 TCAGTTACACTAGTTTTCTTCATGCA 59.010 34.615 0.00 0.00 0.00 3.96
317 640 7.385205 TCTCAGTTACACTAGTTTTCTTCATGC 59.615 37.037 0.00 0.00 0.00 4.06
318 641 8.818141 TCTCAGTTACACTAGTTTTCTTCATG 57.182 34.615 0.00 0.00 0.00 3.07
319 642 9.832445 TTTCTCAGTTACACTAGTTTTCTTCAT 57.168 29.630 0.00 0.00 0.00 2.57
320 643 9.095065 GTTTCTCAGTTACACTAGTTTTCTTCA 57.905 33.333 0.00 0.00 0.00 3.02
321 644 9.095065 TGTTTCTCAGTTACACTAGTTTTCTTC 57.905 33.333 0.00 0.00 0.00 2.87
322 645 9.444600 TTGTTTCTCAGTTACACTAGTTTTCTT 57.555 29.630 0.00 0.00 0.00 2.52
323 646 9.099454 CTTGTTTCTCAGTTACACTAGTTTTCT 57.901 33.333 0.00 0.00 0.00 2.52
324 647 7.851472 GCTTGTTTCTCAGTTACACTAGTTTTC 59.149 37.037 0.00 0.00 0.00 2.29
325 648 7.553044 AGCTTGTTTCTCAGTTACACTAGTTTT 59.447 33.333 0.00 0.00 0.00 2.43
326 649 7.048512 AGCTTGTTTCTCAGTTACACTAGTTT 58.951 34.615 0.00 0.00 0.00 2.66
327 650 6.583562 AGCTTGTTTCTCAGTTACACTAGTT 58.416 36.000 0.00 0.00 0.00 2.24
328 651 6.163135 AGCTTGTTTCTCAGTTACACTAGT 57.837 37.500 0.00 0.00 0.00 2.57
329 652 6.309251 GCTAGCTTGTTTCTCAGTTACACTAG 59.691 42.308 7.70 0.00 0.00 2.57
330 653 6.157211 GCTAGCTTGTTTCTCAGTTACACTA 58.843 40.000 7.70 0.00 0.00 2.74
331 654 4.991687 GCTAGCTTGTTTCTCAGTTACACT 59.008 41.667 7.70 0.00 0.00 3.55
332 655 4.152580 GGCTAGCTTGTTTCTCAGTTACAC 59.847 45.833 15.72 0.00 0.00 2.90
333 656 4.202315 TGGCTAGCTTGTTTCTCAGTTACA 60.202 41.667 15.72 0.00 0.00 2.41
334 657 4.315803 TGGCTAGCTTGTTTCTCAGTTAC 58.684 43.478 15.72 0.00 0.00 2.50
335 658 4.617253 TGGCTAGCTTGTTTCTCAGTTA 57.383 40.909 15.72 0.00 0.00 2.24
336 659 3.492102 TGGCTAGCTTGTTTCTCAGTT 57.508 42.857 15.72 0.00 0.00 3.16
337 660 3.341823 CATGGCTAGCTTGTTTCTCAGT 58.658 45.455 15.72 0.00 0.00 3.41
338 661 2.097142 GCATGGCTAGCTTGTTTCTCAG 59.903 50.000 15.72 0.00 0.00 3.35
339 662 2.086869 GCATGGCTAGCTTGTTTCTCA 58.913 47.619 15.72 1.24 0.00 3.27
340 663 2.086869 TGCATGGCTAGCTTGTTTCTC 58.913 47.619 15.72 0.00 0.00 2.87
364 688 3.475575 GCCTCCTGATCCATTTCTTCTC 58.524 50.000 0.00 0.00 0.00 2.87
390 714 2.126189 GGAGACGTACCGTGTGCC 60.126 66.667 0.00 0.00 41.37 5.01
439 776 1.099689 CCGAAACCGGCCATTGTTAT 58.900 50.000 0.00 0.00 40.66 1.89
463 800 4.065110 GGCATAAAGCTAGGCCGG 57.935 61.111 0.00 0.00 44.52 6.13
468 805 8.854614 AATGTAAAGATAGGGCATAAAGCTAG 57.145 34.615 0.00 0.00 44.79 3.42
478 815 6.354130 TGGACTTGTAATGTAAAGATAGGGC 58.646 40.000 0.00 0.00 0.00 5.19
499 836 8.094548 CCAACCGACTTCAGAAATATATATGGA 58.905 37.037 0.00 0.00 0.00 3.41
502 839 7.017254 ACCCCAACCGACTTCAGAAATATATAT 59.983 37.037 0.00 0.00 0.00 0.86
506 843 3.265995 ACCCCAACCGACTTCAGAAATAT 59.734 43.478 0.00 0.00 0.00 1.28
508 845 1.423921 ACCCCAACCGACTTCAGAAAT 59.576 47.619 0.00 0.00 0.00 2.17
525 862 2.762875 AATCCCTCCGGTCGACCC 60.763 66.667 28.52 11.28 0.00 4.46
561 901 2.564721 GCCTTGGTGGTTGGTGCTC 61.565 63.158 0.00 0.00 38.35 4.26
562 902 2.521708 GCCTTGGTGGTTGGTGCT 60.522 61.111 0.00 0.00 38.35 4.40
563 903 2.837291 TGCCTTGGTGGTTGGTGC 60.837 61.111 0.00 0.00 38.35 5.01
564 904 2.202395 CCTGCCTTGGTGGTTGGTG 61.202 63.158 0.00 0.00 38.35 4.17
565 905 2.198426 CCTGCCTTGGTGGTTGGT 59.802 61.111 0.00 0.00 38.35 3.67
566 906 3.305516 GCCTGCCTTGGTGGTTGG 61.306 66.667 0.00 0.00 38.35 3.77
567 907 2.521465 TGCCTGCCTTGGTGGTTG 60.521 61.111 0.00 0.00 38.35 3.77
568 908 2.203538 CTGCCTGCCTTGGTGGTT 60.204 61.111 0.00 0.00 38.35 3.67
569 909 4.290622 CCTGCCTGCCTTGGTGGT 62.291 66.667 0.00 0.00 38.35 4.16
570 910 2.905996 TACCTGCCTGCCTTGGTGG 61.906 63.158 8.25 0.00 39.35 4.61
571 911 1.675641 GTACCTGCCTGCCTTGGTG 60.676 63.158 8.25 0.00 34.33 4.17
572 912 2.757077 GTACCTGCCTGCCTTGGT 59.243 61.111 0.00 0.00 36.66 3.67
573 913 2.436646 CGTACCTGCCTGCCTTGG 60.437 66.667 0.00 0.00 0.00 3.61
574 914 2.436646 CCGTACCTGCCTGCCTTG 60.437 66.667 0.00 0.00 0.00 3.61
575 915 4.410400 GCCGTACCTGCCTGCCTT 62.410 66.667 0.00 0.00 0.00 4.35
579 919 4.514577 CCTCGCCGTACCTGCCTG 62.515 72.222 0.00 0.00 0.00 4.85
590 930 1.984288 AAGATACCTTGCCCCTCGCC 61.984 60.000 0.00 0.00 36.24 5.54
695 1035 2.558359 CCTGCTTTCCGGAATCTGTTTT 59.442 45.455 19.62 0.00 0.00 2.43
723 1063 1.004277 CTACCCAGCAAAGCCTTACCA 59.996 52.381 0.00 0.00 0.00 3.25
724 1064 1.280998 TCTACCCAGCAAAGCCTTACC 59.719 52.381 0.00 0.00 0.00 2.85
725 1065 2.027100 ACTCTACCCAGCAAAGCCTTAC 60.027 50.000 0.00 0.00 0.00 2.34
726 1066 2.266279 ACTCTACCCAGCAAAGCCTTA 58.734 47.619 0.00 0.00 0.00 2.69
730 1070 1.739371 CGGTACTCTACCCAGCAAAGC 60.739 57.143 0.00 0.00 46.27 3.51
731 1071 1.739371 GCGGTACTCTACCCAGCAAAG 60.739 57.143 0.00 0.00 46.27 2.77
734 1076 2.056223 GGCGGTACTCTACCCAGCA 61.056 63.158 0.00 0.00 46.27 4.41
738 1080 1.143401 GCAAGGCGGTACTCTACCC 59.857 63.158 0.00 0.00 46.27 3.69
742 1084 1.764571 TTGTGGCAAGGCGGTACTCT 61.765 55.000 0.00 0.00 0.00 3.24
798 1144 0.693049 AGATGGGTTGGTGTCTGTCC 59.307 55.000 0.00 0.00 0.00 4.02
799 1145 2.154462 CAAGATGGGTTGGTGTCTGTC 58.846 52.381 0.00 0.00 0.00 3.51
801 1147 1.881973 CACAAGATGGGTTGGTGTCTG 59.118 52.381 0.00 0.00 0.00 3.51
803 1149 1.880027 GACACAAGATGGGTTGGTGTC 59.120 52.381 7.37 7.37 31.64 3.67
807 1153 2.094675 GATGGACACAAGATGGGTTGG 58.905 52.381 0.00 0.00 31.64 3.77
837 1183 4.133078 AGCTTAGCTACAAATGAGATGGC 58.867 43.478 4.30 0.00 36.99 4.40
847 1193 4.714632 ACTTCACCAAAGCTTAGCTACAA 58.285 39.130 7.32 0.00 38.25 2.41
849 1195 4.515567 ACAACTTCACCAAAGCTTAGCTAC 59.484 41.667 7.32 0.00 38.25 3.58
864 1210 1.016627 GCACTGACAGCACAACTTCA 58.983 50.000 1.25 0.00 0.00 3.02
914 1260 1.880340 CGGACGAATCAGGCTCTGC 60.880 63.158 0.00 0.00 0.00 4.26
920 1266 0.460284 CAAGGACCGGACGAATCAGG 60.460 60.000 9.46 0.00 45.14 3.86
973 1323 5.528690 TCTCAGTCCAATTTGTCTTGTCAAG 59.471 40.000 6.21 6.21 0.00 3.02
975 1325 5.034852 TCTCAGTCCAATTTGTCTTGTCA 57.965 39.130 0.00 0.00 0.00 3.58
978 1328 4.645535 TCCTCTCAGTCCAATTTGTCTTG 58.354 43.478 0.00 0.00 0.00 3.02
980 1330 4.324099 CCATCCTCTCAGTCCAATTTGTCT 60.324 45.833 0.00 0.00 0.00 3.41
992 1342 1.910722 CCCACACCCATCCTCTCAG 59.089 63.158 0.00 0.00 0.00 3.35
1179 1529 8.548877 AGTTGTTGAAAGGTAGGATATGTGTAT 58.451 33.333 0.00 0.00 0.00 2.29
1180 1530 7.913789 AGTTGTTGAAAGGTAGGATATGTGTA 58.086 34.615 0.00 0.00 0.00 2.90
1181 1531 6.779860 AGTTGTTGAAAGGTAGGATATGTGT 58.220 36.000 0.00 0.00 0.00 3.72
1182 1532 6.878923 TGAGTTGTTGAAAGGTAGGATATGTG 59.121 38.462 0.00 0.00 0.00 3.21
1227 1577 4.327087 GGCCATAATTCTTTTGAAAGCACG 59.673 41.667 0.00 0.00 42.31 5.34
1230 1580 6.165577 TCTTGGCCATAATTCTTTTGAAAGC 58.834 36.000 6.09 0.00 42.31 3.51
1248 1598 3.993920 TCCAGCATTTTTCTTTCTTGGC 58.006 40.909 0.00 0.00 0.00 4.52
1249 1599 6.539826 AGTTTTCCAGCATTTTTCTTTCTTGG 59.460 34.615 0.00 0.00 0.00 3.61
1250 1600 7.278424 TCAGTTTTCCAGCATTTTTCTTTCTTG 59.722 33.333 0.00 0.00 0.00 3.02
1251 1601 7.330262 TCAGTTTTCCAGCATTTTTCTTTCTT 58.670 30.769 0.00 0.00 0.00 2.52
1252 1602 6.877236 TCAGTTTTCCAGCATTTTTCTTTCT 58.123 32.000 0.00 0.00 0.00 2.52
1253 1603 6.980397 TCTCAGTTTTCCAGCATTTTTCTTTC 59.020 34.615 0.00 0.00 0.00 2.62
1254 1604 6.877236 TCTCAGTTTTCCAGCATTTTTCTTT 58.123 32.000 0.00 0.00 0.00 2.52
1287 1704 4.810730 GCAGCAAGCACAACAACA 57.189 50.000 0.00 0.00 44.79 3.33
1636 2056 0.231279 GAGCTCGATCGACGTCTCTC 59.769 60.000 15.15 11.37 43.13 3.20
1654 2074 1.691976 ACCAAGAACACATGACCTCGA 59.308 47.619 0.00 0.00 0.00 4.04
1747 2171 8.271312 ACATATATACGCTCTTTACTCTCCTC 57.729 38.462 0.00 0.00 0.00 3.71
1755 2179 9.999009 CTAATCCGAACATATATACGCTCTTTA 57.001 33.333 0.00 0.00 0.00 1.85
1772 2196 6.544564 ACCTGAAAAACAAAGACTAATCCGAA 59.455 34.615 0.00 0.00 0.00 4.30
1773 2197 6.059484 ACCTGAAAAACAAAGACTAATCCGA 58.941 36.000 0.00 0.00 0.00 4.55
1774 2198 6.313744 ACCTGAAAAACAAAGACTAATCCG 57.686 37.500 0.00 0.00 0.00 4.18
1837 2261 4.832248 AGATCTAACCGTGCAAAAGATCA 58.168 39.130 19.05 0.00 43.20 2.92
1850 2274 9.152595 ACAATCTACGAAAAGAAAGATCTAACC 57.847 33.333 0.00 0.00 33.77 2.85
1886 2323 1.269166 CGTCTTCGACTGTACCATGC 58.731 55.000 0.00 0.00 39.71 4.06
1889 2326 1.948834 TGAACGTCTTCGACTGTACCA 59.051 47.619 0.00 0.00 40.62 3.25
1917 2354 8.213518 AGCAATCAACGATCTAATAATTGTGT 57.786 30.769 0.00 0.00 0.00 3.72
1940 2377 7.725818 AAAGTTCTGTTAGGTTACAGTAAGC 57.274 36.000 13.72 13.72 44.62 3.09
1955 2392 1.134037 TGCCGGTGGTTAAAGTTCTGT 60.134 47.619 1.90 0.00 0.00 3.41
1980 2417 8.106462 TGGTTGATTGAAAGTTATGATCTGGTA 58.894 33.333 0.00 0.00 0.00 3.25
1993 2430 9.848172 CTTTCGTTTTAAATGGTTGATTGAAAG 57.152 29.630 0.00 0.00 33.81 2.62
2054 2494 3.420893 AGTTTCTGCGAAAATCCATCCA 58.579 40.909 5.51 0.00 0.00 3.41
2065 2505 3.615496 GCGGTTATCTTTAGTTTCTGCGA 59.385 43.478 0.00 0.00 0.00 5.10
2079 2519 4.272748 GTCATAGGGAAGTTTGCGGTTATC 59.727 45.833 0.00 0.00 0.00 1.75
2118 2624 3.488489 CGCACTAAAAAGGTACATGCAC 58.512 45.455 0.00 0.00 0.00 4.57
2121 2627 2.159435 GGGCGCACTAAAAAGGTACATG 60.159 50.000 10.83 0.00 0.00 3.21
2220 3001 0.179113 AACAGGCTTGCAACCAAACG 60.179 50.000 16.93 0.00 0.00 3.60
2234 3015 6.441093 TGCTTTGCATTATCTTAGAACAGG 57.559 37.500 0.00 0.00 31.71 4.00
2257 3038 6.096705 TGCAAGGCATGTAACTAATTAGCAAT 59.903 34.615 12.54 2.19 31.71 3.56
2260 3041 5.499139 TGCAAGGCATGTAACTAATTAGC 57.501 39.130 12.54 0.00 31.71 3.09
2321 3153 1.066215 TGTGTCTCTGTGTGTGTGCTT 60.066 47.619 0.00 0.00 0.00 3.91
2395 3243 7.996385 ACTGTTTGTCAACTTAACTGCTTATT 58.004 30.769 0.00 0.00 33.58 1.40
2464 3312 3.624777 AGGTTATCTCTGCACCAATTGG 58.375 45.455 23.31 23.31 42.17 3.16
2527 3375 0.035458 GGAGTTGAGGTGGTGACCAG 59.965 60.000 3.58 0.00 45.98 4.00
2547 3395 6.888088 TGAAGGTGATTGTCTTCAATGATGAT 59.112 34.615 2.13 0.00 44.14 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.