>input_sequence_73849
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---------------------------------------------------------------------ATGGGTGTGGG
CGGCACTCTGGACTACTTGTCCGAGCTTCTCGGCGGCGGCGGCCGGCGCCGGAGCTACAAGCAGAAGAGGAAGCAGTTCC
AGACGGTGGAGCTCAAGGTCAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCGGCATGAAAGGT
ATGCATACATACACATATCCTACCTTTCAACAACTCAAAGAATCACGGAATGATGACGTGCTTTCAAAAGAATTATGGCC
AAGAAAGAAAAATGCTGGAAAACTGAG-----------------------------------------------------
--------------AGGCATTTTTGTTGTTGTGCTTGCTGCAGGGGTGCAGTCGGTGGAGATCAACCGGAAGCAGTACAA
GGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCCACCGGGAAGAAGGCCGAGATCTGGC
CATACATCCCCTACAACCTCGTGGCGCACCCCTACGCCGCGCAGACCTACGACAAGAAGGCGCCCCCGGGCTACGTGCGC
AAGGTGGACGCCGTCATGCCCGTCGCCAGCTACGGCGGCCCCGGCGCCGGC---GCGCAGGAGGAGCGGCTCACCACCAT
GTTCAGCGACGACAACCCCAACGCCTGCTCCGTCATGTGA----------------------------------------
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>chr5A_1_TraesCS5A01G191400
AGGATATGGTTATCCTAAACGCAACGAGTACCAATAATGATGGAGTCTATGAGCAATGAGTGAACCACTTCTGGCAGCAT
GCATGCCGGGCATGGCCAAGAGGAGTTTATTTGCCCCAAAGGTTTCAGTGAATTGAGGGACATGCTGTATGCAAGATGGA
ACATAAGGAACACAATG---------------------------------------------------------------
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----------CAATGCAATGCAATCATAAGGAACACACCACCGCGCAATTC---------TCGCAGCCCCGTAAAGTTGC
TGACAAATGTTTAAGTAGACGACGAGTATCTACGTAGTCACTTGTTGAAATGCCTAGAAAGACAAGTATTTAGGATATTG
CATGAAGAAAACTAGTGTAACTGAGAAACAAGCT-AGCCATGCACGCGAGAAGAAATGGATCAGGAGGCGCCCGGCACAC
GGTACGTC-------------TCCACTTGCTTAGCGCGGGGGAGAAACGTTACTGATAACAATGGCCGGTTTCGGGCTCC
CGGCCTAGCTTTATGCCCTATCTTTACATTACAAGTCCATATATATTTCTGAAGTCGGTTGGGGTCGACCGGAGGGATTC
AGCAAAAG---GTACAGTGCGAGCACCAACCACCAAGGCAGGCAGGTACGGCGAGGGGCAAGGTATCTTGGGAAGCTTCT
GGCGGGCATCAGAAAAATACGGAGGCGGGCAGACGGCCGGCCGGCTCGCCGCTAGCTGTGCAACAAAACAAAGCAAAACA
GATTCCGGAAAGCAGGCAGCTTTGGTAAGGC--TTTGCTGGGTAGAGTACCGCCTTGCCACAAAGCCACCCAACAA----
CTGCCAAGGGCCTATATATATAGGGACAGACACCAACCCATCTTGTGTCCATCAAGTCTCCAGCCATCTCATTTGTAGCT
AAGCTTTGGTGAAGTTGTGCTGTCAGTGCGACTGTGTGACCAACTGATTCAGGAAGAGAGCAGAGCCTGATTCGTCCG--
--GTCCTTGGGTGTTTTCTTGACTCTGTTTCTTGTTGCTTTCCTTGACAAGACAAATTGGACTGAGAGGATGGGTGTGGG
CGGCACTCTGGACTACTTGTCCGAGCTTCTCGGCGGCGGCGGCCGGCGCCGGAGCTACAAGCAGAAGAGGAAGCAGTTCC
AGACGGTGGAGCTCAAGGTCAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCGGCATGAAAGGT
ATGCATACATACACATATCCTACCTTTCAACAACTCAAAGAATCACGGAATGATGACGTGCTTTCAAAAGAATTATGGCC
AAGAAAGAAAAATGCTGGAAAACTGAG-----------------------------------------------------
--------------AGGCATTTTTGTTGTTGTGCTTGCTGCAGGGGTGCAGTCGGTGGAGATCAACCGGAAGCAGTACAA
GGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCCACCGGGAAGAAGGCCGAGATCTGGC
CATACATCCCCTACAACCTCGTGGCGCACCCCTACGCCGCGCAGACCTACGACAAGAAGGCGCCCCCGGGCTACGTGCGC
AAGGTGGACGCCGTCATGCCCGTCGCCAGCTACGGCGGCCCCGGCGCCGGC---GCGCAGGAGGAGCGGCTCACCACCAT
GTTCAGCGACGACAACCCCAACGCCTGCTCCGTCATGTGAGAACCTCCGTGAAGCGAGAGACGTCGATCGAGCTCGAGGT
CATGTGTTCTTGGTGGCGGTGACATGTATGTATGTGGCTCCAGACAGAGTGTATGGCATGCGTGTGCTGTTTAGATTGTA
AA-TT---AAGAGGAGAGTAAAGAGCGTATATATGTTCGGATTAGTCTTTGTTTTTCAGGTTTCTGTCTGATGCATGTGT
GCTGGAATCTCAACCTTTTTTGATCTTTTGCACGGTTAGATCTTTCTTTTCG-------------TAGATTGTTGATTTT
GAGCATGGTACAGTCGAAGACGTTCACATACACACACAATTATTAGATCGTTGATTGCTTACTGTAACCTAACAGAACTT
TAACCACCGGCAATTTTACCAGATCATAACTTTCAATCAACCATTTAAAACGAAAGACTGCTTTGAAGATAAT---TACC
AGAAACAACTAAATGGATGGATTTTCGCAGAAACTAAAGATAA-------------------------------------
----------------------------C-CGCAAACTTCCCTATGACTATGATTGGAGTTGTGTGCATGTACCTTTTTA
GTGCGCCCATGCGTGCGCGTCAACGTCGCAAGATTTTGAGCAGATGCTTTTCTTACTTCTAT------------------
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---------------------------------------------------------GG---------------------
-------------------TTGAGCAGAACGCAGTCATGGCGTTTGGTTGCAAGCCTGTTCTAAGATAATGCAAAGCATT
GCTAATTA--------------------------------------------------GTTACATGCCTTGCATGTGGTT
TGATAACCTCACTATTGAAGTG-TGAGTTTACAAGCACACACACAGAGACACAACATAGACAA----------------C
TAATAACAGGTGTAGCATAAACCAGAGTCTTAAACATACACTAATAAGCAGTTAAGTTGACAAACAGTTGTGACAAAGTC
TTACACTACTAAACATCCAACGCAAAAGTCTCCAATTGGTGCAGAGATAACCTCCTAAAGATCCATGGGAAATGCCTCAT
TGTGCCTCTTGCACCTGGTCACCACCTCAACTCCATCATCATTGAAGACAATCACCTTCAAGGTGTTGGGAGTCGCCAGC
TTGAAGGCGATGAGGTACCCGTCTTGAT
>chr5D_1
AGAATATGGTTATCCTAAACACAACGAGTACCAATAATA---GAGTCTATGAGCAATGAGTGAACCACTTCTGGCAGCAT
GTA----GGGCATGGCCAAGAGGGGTTTCTTTT-CCCAAAGGTTTCAGTGAATTGAGGGACATACTGTATGCAGGAAGCA
ACAT--AGAGGCTGGTGAAGGAGGCCTGGCC-----ACCAATCATGACAGAGTTTTGTAAGACCTGTAAAGTGGGGCCCA
GCTACCCAATCAGGGGGCAGAGCGGCAGCTCAGCCAACACCACATGGCAGCTGGCAGCCCCATATTGGTCCTAGGATGAC
TATGTGGATCCCCATTATGGATGCACCTCCCTCCCTGCTGGCACCA--------ACCGGCACACAGCAAACGCATGACCA
GTATTTCTGTTGTGAAAAACCCACGTCCAGGCTGTATGCATTGCCCTTTGGAAACCGAAACTGAAACCGGTTGAGAGGCT
GGGGCCAGCTCAATGCAATGCAATCATAAGGAACACACCACCGCGCAATTCTCGCAGCGTTCGCCGCCACGTAAAGCTGC
TGACAAATGTTTAAGTAGAATTCCCAACGCTGATCTTTGATAAATCATCTCATGCATGA---------------------
-----------------------AGAAACAAGCTAAGCCATGCACGCAAGAAGAAATGAATCAAGAGGCGCCCAGCACAC
GGTACGGACGTACGTGCCCTTTCCACTTGCTTAGCGCGGGGGAGAAACGTTACTGCTAACAATGGCCGGTTTCCGGCTCA
CGGCTTAGCTTTATCCCCTGCCT-----TTACAAGCCCCTATTTGTTTCTGAAGTCGGTTGAGGTCGACCGGAGGGATTC
AGCGAAAGGTAGTACAGTGCAT-------------------GGAGGTACAGCGAGGGGCAAAGTATCTTGGGAAGCTTCT
GGCGGGCATCAGAAAAATACGGAGGCGGGCAGGCGGCCGGCCGGCTCGCCGCTAGCTGTGCAACAAAACAAAGC-AAACA
GATTCCGGAAAGCAGGCAGCTTGCTAAAGCTTATTAGCTAGGTGGAGTACCGCCTTGCCACAAAGCCACCCAACAACTGC
CTGCCAAGGGCCTATATATACAGCCAACAACAG----CCATCTTGTGCACATCAAGTCTCCAACCATCTCACCTCTAGCT
-AGCTTTGGCGAAGTTGTGCTGTCAGGGCGACTGTGTGACCAACTGATTCAGGAAGAGAACAGAGTCTGGTTCGGCCG--
--GTCCTTGGGTGTTTTCTTGACTCTGTATCTTGCTGCTTTCGTCGAGAGGACAAATTGGATTGAGAGGATGGGTGTGGG
CGGCACTCTGGACTACTTGTCGGAGCTTCTCGGCGGCGGCGGCCGGCGCCGGAGCTACAAGCAGAAGAGGAAGCAGTTCC
AGACGGTCGAGCTCAAGGTCAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCAGCATGAAAGGT
ATGCATAC----ACATATCCTACCTTTCAACAACTCAAAGAATCACGGAATGATGATGTCCTTTCAAAAGAATTATGCAT
GGCCAAGAAAAATGCTGGAAAACTGAG-----------------------------------------------------
--------------AGGCATTCTGTTGTATTT------TGCAGGGGTGCAGTCGGTGGAGATCAACCGGAAGCAGTACAA
GGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGACAACCGGGAAGAAGGCCGAGATCTGGC
CATACATCCCCTACAACCTCGTGGCGCACCCCTACGCCGCCCAGACCTACGACAAGAAGGCGCCCCCGGGCTACGTGCGC
AAGGTGGACGCCGTCATGCCCGTCGCCAGCTACGGCGGCCCCGGCGCCGGC---GCGCAGGAGGAGCGCCTCACCACCAT
GTTCAGCGACGACAACCCCAACGCCTGCTCCGTCATGTGAGAACCTCCGTGAAGCAAGAGACATCGATCGAGCGCGAGGT
CATGTGTTCTTGGTGGCGGTGACATGTATGTATGTGGCTCCGGACAGAGTGTATGGCATGCGTGTGTTGTTTAGATTGTA
AATTAGTAAAAAGGAGAGAAAAGAGCGTATATATG---GGAATAGTCTTTGTTTTTCAGGTTTCTGTCTGCTGCATGTGT
GCTGGAATCTTAATCTTTATCGATCTTTTGCAGTGTTAGATCTTTCTTTTCAGGGATCGCACAGTTAGATTGTTGATTTT
GAACACGGTATAGTCGAAGACGCTCACATACACGCATAATTATTAGATCGTTGATTACTTACTGTAACCTAGCAGAACTT
TAACCATCGCAATTTT-ACCAGATCATAATTTTCAATCAACCATTTAAAACGAAAGACTGCTTTGAAGATAATTAGTACC
AGAAACAACTAAA-GGATGGATTTGCGCCGAAACTAAACATAA-------------------------------------
----------------------------CTCGTAAGCTTCCCTATGACTATGATTGGAGTTGTCTGAATGTACCTTTTTA
GTGCGCCGATGCATGCGCGTCAACGTCGCGGGATTTTGAGCAGGTGCTTTTCTTACTTCTATACTCCCTTTATTGAAAGA
ATTTTGGTGCCTACAATAGCTTTTGATCCACAAAGCAAATGTCATATCAGAAACTTCCATGGATATTTAAAGCACAACAA
AACTATTGTTTTCGTAAGTGAAGAAGTGGTACTCCTTCCGGTCTTGAAGGGTATGTTTGGTTACCTGCATGGATTTTG-G
CACTTTGCATATGTGGCCCGACTCAGGTAGTCTGAGTGAAAACAGATAAAAAACCATGTTCTATACATAGTTTGTTTGCC
TGCATCCTCTCCAGCCTAATTGAGCAGAACGCACCCATGGTGTTTGGTTGCAAGACTGTTCTAAGATAATGCAAAGCGTT
ACTATTTCCCCCGCAAAAAAGCATTGCTATTTCCCCCGCAAAAAAGCATTGCTATTTGGCTATATGCAAGACATGTGGTT
TGATAACCTCATTATTGGAGTGGTGAGGTTATCAGCACACACATAGAGACACAACATAGACAAGC---------------
-----------GTAGCATAAACCAGAGTCTTAAACACATAGGGATAAGCGATTAAATCGAGAAACAGTTGTGACAAAGTC
TTACACTACTAAACATCCAACACAAAAGTCTTAAACTGGTGCGGTGATAACTTCCTAAATATCCATGGCAAATGCCTCCT
CGTGCCTCTTGCACTTGGTCACCACCTCAACACCGTCATCATTGAAGACAATCACCTTCAAGGTGTTGGGAGTCGCCAGC
TTGAAGGCGATGAGGTACCTGATCTT--
>chr5B_1
AGAATATGGTTATCCTAAACACAACGAGTACCAATAATAATGGAGTCTACGAGCAATGAGTGAACCACTTCTGGCAGCAT
GCA----GGGCATGTCCAAGAGGGGTTTCTTTT-CCCAAAGGTTTCAGTGAATCGAGGGACATAGTGTATGCAAGAAGGA
ACATAGAGAGGCTGGTGAAGGAGGCCTGGCCTGGCCACCAATCATGACAGAGTTTTGTAAGACCTGTAAAGTGGGGCCCA
GCTACCCAATCAGGGGGCAGAGCGGCAGCCCAGCCATCACCTCATGGCAGCTGGCAGCCCCAGATTGGTCCTAGGATGAC
TATGTGGATCCCCATTATGCATGCACCTCCCTCCCTGCTGGCACCATCATTCACACCGGCACACAGCAAACGCATGACCA
GTATTTCTGTTGTGGAAAACCCACGTCCAGGCTGTATGCATTGCCCTTTGGAAACCGAAACTGAAACCAGTTGAGAGGCT
GGGGCCAGCTCAATGCAATGCAATCATAAGGAACATACCACTGCGCAATTCTCGCAGCGTTCGCCGCCACGTAAAGTTGC
TGATAAATGTTTAAGTAGAATTCCCAACGCTGATCTTTCATAAATCATCTCATGCATGA---------------------
-----------------------AGAATCAAGCT-AGCCATGCACGCAAGAAGAAATGAATCAAGAGGCGCCCAGCACAC
GGTACGTACGTACGTGCCCTTTCCACTTGCTTAGCGCGGGGGAGAAACGTTACTGCTAACAATGGCCGGTTTCCGGCTCA
CGGCTTAGCTTTATCCTCTGCCT-----TTACAAGCCCCAATTTGTTTCTGAAGTCGGTTGAGGTCGACCGGAGGGATTC
AGCAAAAG---GTACAGTGCAT-------------------GCAGGTACAGCGAGGGGCAAGGTATCTTGGGAAGCTTCT
GGCGGGCATCAGAAAAATACGGAGGCGGGCAGGCGGCCGGCCGGCTCGCCGCTAGCTGTGCAACAAAACAAAGC-AAACA
GATTCCGGAAAGCAGGCAGCTT----------ATTAGCTAGGTGGAGTACCGCCTTGCCACAAAGCCAGCCAACAA----
CTGCCAAGGGCCTATATATATACACATA-----CAACCCATCGTTTGTCCATCGACTCTCCAACCATCTCATCTCTAGCT
AAGCTTTGCGCAAGTAGTGCTGTCAGTGCGACTGTGTGACCAACTGATTCAGGAAGAGAACAGAGTCTGACTCGTCCGGT
CCGTCCTTGGGTGTTTTCTTGACTCTGTTTCTTGTTGCTTTCGTCGAGAGGACAAATTGGATTGAGAGGATGGGTGTGGG
TGGGACTCTGGACTACTTGTCCGAGCTTCTCGGCGGCGGCGGCCGGCGCCGGAGCTACAAGCAGAAGAGGAAGCAGTTCC
AGACGGTGGAGCTCAAGGTCCGGATGGACTGCGACGGCTGCGAGCTTAAAGTCAGGAACGCCCTCTCCAGCATGAAAGGT
ATGCATAC----ACATATCCTACCTATCAACAACTCAAGGAATTATGGTT------------------------------
-----AGAAAAATGCTGTAAAATTGATGATGAAATTCTTGATTCTTTTCCTTTGAAAATCCTTGCAAAAAAATTGTAAAT
GCTGGAAAATTTAAAGGCATTTTGTTGTATTT------TGCAGGGGTGCAGTCGGTGGAGATCAACCGGAAGCAGTACAA
GGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCCACCGGGAAGAAGGCCGAGATCTGGC
CATACATCCCCTACAACCTCGTCGCGCACCCCTACGCCGCGCAGACCTACGACAAAAAGGCGCCCCCGGGCTACGTGCGC
AAGGTGGACGCCGTCATGCCCGTCGCCAGCTACGGCGGCCCCGGCGCCGGCCCCGCGCAGGAGGAGCGGCTCACCACCAT
GTTCAGCGACGACAACCCCAACGCCTGCTCCGTCATGTGAGAACCTCCGTGAAGCAAGAGACGTCGATGGAGA------T
CATGTGTTCTTGGTGGCGGTGACATGTTTGTATGTGGCTCCAGACAGAGTGTATGGCATGCGTGTGTTGTCTAGATTGTA
AATTT---AAAAGGAGAGAAAAGAGCGTATATATG---GGATTAGTCTTTGTTTTTCAGGTTTCTGTCTGCTGCATGTGT
GCTGGAATCTTAATCTTTTTCGATCTTTTGCACTGTTAGATCTTTATTTTAGAGGATCGCACAATTAGATGGTTGATTTT
GAAGACGGTACACTCGGAGACGCTCACATACACGCACAATTATCGGATAGTTGATTACTTACTGTAACCTAGCAGAACGT
TAACCACCGGCAATTT-ACATGATCATAATTTTCAATCAACCATTTAAA-CGAAAGACTGCTTTGAAGATAATTAGTACC
AGAAACAACTAAAACGATGGATTCGCGCAGAAACTAAACATAACCCGCAAACTTTTTTTTACATATATCAAGGTTTGAGA
CTGCTTACCGGGTCTGCCACCCGGTAACC-CGCAAACTTCCCTATGACTATGATTGGAGTTGTCTGAATGTACCATATTA
GTGTGCCGATGCATGCGCCTCAACGTCGCAAGATTTTGAACAGATGCTTTTCTTACTTCTATGCTCCCTTTATTGAAAGA
ATTT-GGTGTCTACAATAGCTTTTGATCCACTGAGCAAATGTCATATCAGAAACTTCCATGGATATTTAAAGCACAACAA
AACTATTATTTTCCTAAGTGAAGAAGTGGTACTCCTTCGGGCCTTGAAGGGTCTGTTTTGTTACCTACATGAATTTTGTG
CACTTTACATATGTGGCCCGACTCGGTCAGGTTGAGTGAAAACATGCAACAAACCATGG---------------------
-------------------TTGAGCAGAACACAGTCATGGTGTTTGGTTGCAA---------------------------
--------------------------------------------AGCGTTGTTATTTGGTTACATGCCTTGCATGTGGTT
TGATAACCTCACTATTGGAGTG-TGAGTTTACGAGCATACATACAGAGACACAACATAGACAACTAATAACATAGACAAC
TAATAACAGGTGTAGCATAAACCAGAGTCTTAAACATACACTGATAAGCAGTTAAGTTGACAAACAGTTGTGACAAAGTC
TTACACTACTAAACATCCAACGCAAAAGTCTTCAATTGGTGCAGAGATAACCTCCTAAAGATCCATGGGAAATGCCTCAT
TGTGCCTCTTGCACTTGGTCACCACCTCAACTCCGTCATCATTGAAGAAAATCACCTTCA--------------------
----------------------------
>SNPs
--S-----------------S-----------------S-----------------------------------------
---SSSS----------------S----S---SS-----------------------------S------------S---
-----SS--SSSSSS-----------------------------------------------------------------
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----------------------------------------------------------------S---S-----------
-------------------SSS-SSSSSS--SSSSSS---SSSS-SSSSSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS------------------------S----------S----S---------S------
-------S-----------------------------------------------S-----------------S-----S
----S---------S----SS--SSSSS-------S--S---S-S----------------S------------------
--------------------SSSSSSSSSSSSSSSSSSSSS--------S------------------------------
--------------------------------S-----------------------------------------S-----
----------------------SSSS---SS----S---S---S------------------------------------
-----------------------SS-S-S---S-----------------------------S---------S-S-----
---------S-------------------------------------------------S-----S--------------
------------------------------------------S-S--S-S-----------S------------------
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--------------------------------------------------------------------S-----------
--------SSSS--------------------------------------------S--S-----------------SSS
SSSS----------------------------------------------------------------------------
-----------------------SS-SSS-S-SSSSSS------------------------------------------
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-------------------------------------------------------S-----------------S------
------------------------------------------------------------------S-------------
----------S-------S----------------SSS--------------------------------S---------
----------S--S------S------------S----------------------------------------------
--S--S----------------S----------S----------------------S--------------S--------
----------------S------------S--------------------------------------------------
-------------S----------S-------------S-----------------------------------------
---------------------------------------------------------------S--S-------------
-------S----S-------------------------------------------------------------------
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----------------------------------------S-------------S----------------------S--
S---S--S------------------------------------------------------------------------
-----------------S--------------S-----------------------------------------------
------------------------------------------S-------------------------------------
-------------------------------S------------------------------------------------
--------------S-------------------S---------------------------------------------
-------------------S-SSS-SSS
>forward_904
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----GCAAAAGGTACAGTGCGAGC--------------------------------------------------------
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>reverse_3375
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--------------CTGGTCACCACCTCAACTCC----------------------------------------------
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