Multiple sequence alignment - TraesCS5A01G191000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G191000 chr5A 100.000 2618 0 0 1 2618 395305102 395302485 0.000000e+00 4835.0
1 TraesCS5A01G191000 chr5A 92.237 219 17 0 88 306 82979669 82979887 7.040000e-81 311.0
2 TraesCS5A01G191000 chr5A 100.000 89 0 0 1 89 549369638 549369726 5.800000e-37 165.0
3 TraesCS5A01G191000 chr5A 96.000 100 3 1 1 100 78917137 78917235 7.500000e-36 161.0
4 TraesCS5A01G191000 chr5A 88.764 89 10 0 1 89 458333742 458333654 2.750000e-20 110.0
5 TraesCS5A01G191000 chr5D 92.721 1882 74 28 335 2192 302743421 302745263 0.000000e+00 2658.0
6 TraesCS5A01G191000 chr5D 91.053 190 10 4 2185 2373 302745834 302746017 1.560000e-62 250.0
7 TraesCS5A01G191000 chr5D 88.608 79 6 3 2543 2618 295079755 295079833 2.770000e-15 93.5
8 TraesCS5A01G191000 chr5B 90.650 1893 82 43 614 2462 347301925 347303766 0.000000e+00 2427.0
9 TraesCS5A01G191000 chr5B 92.553 282 18 2 335 614 347301467 347301747 4.060000e-108 401.0
10 TraesCS5A01G191000 chr2A 92.920 226 15 1 88 312 150121074 150121299 6.990000e-86 327.0
11 TraesCS5A01G191000 chr4D 92.140 229 18 0 88 316 392732101 392731873 9.040000e-85 324.0
12 TraesCS5A01G191000 chr6D 91.189 227 19 1 88 314 231731947 231731722 9.100000e-80 307.0
13 TraesCS5A01G191000 chr6A 90.265 226 20 2 88 312 575277366 575277142 7.090000e-76 294.0
14 TraesCS5A01G191000 chr6A 89.333 225 23 1 88 312 596410876 596411099 5.520000e-72 281.0
15 TraesCS5A01G191000 chr6A 91.011 89 8 0 1 89 15464897 15464809 1.270000e-23 121.0
16 TraesCS5A01G191000 chr6A 86.842 76 8 2 2543 2618 124129974 124130047 1.670000e-12 84.2
17 TraesCS5A01G191000 chr4A 89.427 227 24 0 88 314 429650283 429650057 1.190000e-73 287.0
18 TraesCS5A01G191000 chr4A 96.970 33 1 0 2440 2472 738814238 738814206 3.640000e-04 56.5
19 TraesCS5A01G191000 chr4A 100.000 28 0 0 2445 2472 119783332 119783305 5.000000e-03 52.8
20 TraesCS5A01G191000 chr4A 96.774 31 1 0 2442 2472 599007850 599007880 5.000000e-03 52.8
21 TraesCS5A01G191000 chr7A 89.035 228 25 0 88 315 686010945 686011172 1.530000e-72 283.0
22 TraesCS5A01G191000 chr7A 88.646 229 25 1 88 316 116000522 116000295 7.140000e-71 278.0
23 TraesCS5A01G191000 chr7A 97.778 90 2 0 1 90 85813011 85812922 3.490000e-34 156.0
24 TraesCS5A01G191000 chr7A 91.011 89 8 0 1 89 66647017 66647105 1.270000e-23 121.0
25 TraesCS5A01G191000 chr7B 97.753 89 2 0 1 89 537737080 537737168 1.250000e-33 154.0
26 TraesCS5A01G191000 chr7B 88.750 80 5 4 2543 2618 705196330 705196409 7.710000e-16 95.3
27 TraesCS5A01G191000 chr7B 100.000 28 0 0 2456 2483 524875008 524874981 5.000000e-03 52.8
28 TraesCS5A01G191000 chr3B 91.011 89 8 0 1 89 9283467 9283379 1.270000e-23 121.0
29 TraesCS5A01G191000 chr3B 91.011 89 8 0 1 89 769480803 769480715 1.270000e-23 121.0
30 TraesCS5A01G191000 chr3B 86.207 87 12 0 1455 1541 821391470 821391384 7.710000e-16 95.3
31 TraesCS5A01G191000 chr7D 88.312 77 7 2 2544 2618 490223959 490223883 9.980000e-15 91.6
32 TraesCS5A01G191000 chr7D 87.179 78 8 2 2541 2616 627122769 627122846 1.290000e-13 87.9
33 TraesCS5A01G191000 chr3D 88.462 78 6 3 2542 2618 524718378 524718453 9.980000e-15 91.6
34 TraesCS5A01G191000 chr2B 87.013 77 8 2 2544 2618 495000300 495000376 4.640000e-13 86.1
35 TraesCS5A01G191000 chrUn 85.714 77 9 2 2544 2618 305478220 305478296 2.160000e-11 80.5
36 TraesCS5A01G191000 chr1A 85.714 77 9 2 2544 2618 566342497 566342421 2.160000e-11 80.5
37 TraesCS5A01G191000 chr3A 95.000 40 1 1 2445 2483 725929837 725929876 7.820000e-06 62.1
38 TraesCS5A01G191000 chr2D 100.000 29 0 0 2446 2474 590723462 590723490 1.000000e-03 54.7
39 TraesCS5A01G191000 chr1D 92.105 38 2 1 2436 2472 295840758 295840721 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G191000 chr5A 395302485 395305102 2617 True 4835 4835 100.0000 1 2618 1 chr5A.!!$R1 2617
1 TraesCS5A01G191000 chr5D 302743421 302746017 2596 False 1454 2658 91.8870 335 2373 2 chr5D.!!$F2 2038
2 TraesCS5A01G191000 chr5B 347301467 347303766 2299 False 1414 2427 91.6015 335 2462 2 chr5B.!!$F1 2127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.037326 TGCTGAATCACACGTCCTCC 60.037 55.0 0.0 0.0 0.0 4.30 F
495 496 0.685785 TGCTCCTCCTCCTGCTACTG 60.686 60.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1580 0.405585 AGTGGTGCTACTTGGCCATT 59.594 50.0 6.09 0.0 33.20 3.16 R
1987 2220 0.866061 CGGATTCGGTCTACGCAGTG 60.866 60.0 0.00 0.0 45.73 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.574251 AAATGGTTGCAATTAGTACATCTACA 57.426 30.769 0.59 0.00 0.00 2.74
30 31 7.792374 ATGGTTGCAATTAGTACATCTACAG 57.208 36.000 0.59 0.00 0.00 2.74
31 32 5.584649 TGGTTGCAATTAGTACATCTACAGC 59.415 40.000 0.59 0.00 0.00 4.40
32 33 5.007724 GGTTGCAATTAGTACATCTACAGCC 59.992 44.000 0.59 0.00 0.00 4.85
33 34 5.351948 TGCAATTAGTACATCTACAGCCA 57.648 39.130 0.00 0.00 0.00 4.75
34 35 5.116180 TGCAATTAGTACATCTACAGCCAC 58.884 41.667 0.00 0.00 0.00 5.01
35 36 4.511826 GCAATTAGTACATCTACAGCCACC 59.488 45.833 0.00 0.00 0.00 4.61
36 37 5.670485 CAATTAGTACATCTACAGCCACCA 58.330 41.667 0.00 0.00 0.00 4.17
37 38 5.950544 ATTAGTACATCTACAGCCACCAA 57.049 39.130 0.00 0.00 0.00 3.67
38 39 5.748670 TTAGTACATCTACAGCCACCAAA 57.251 39.130 0.00 0.00 0.00 3.28
39 40 3.939066 AGTACATCTACAGCCACCAAAC 58.061 45.455 0.00 0.00 0.00 2.93
40 41 3.583086 AGTACATCTACAGCCACCAAACT 59.417 43.478 0.00 0.00 0.00 2.66
41 42 3.059352 ACATCTACAGCCACCAAACTC 57.941 47.619 0.00 0.00 0.00 3.01
42 43 2.290323 ACATCTACAGCCACCAAACTCC 60.290 50.000 0.00 0.00 0.00 3.85
43 44 1.729586 TCTACAGCCACCAAACTCCT 58.270 50.000 0.00 0.00 0.00 3.69
44 45 1.623811 TCTACAGCCACCAAACTCCTC 59.376 52.381 0.00 0.00 0.00 3.71
45 46 1.347707 CTACAGCCACCAAACTCCTCA 59.652 52.381 0.00 0.00 0.00 3.86
46 47 0.109342 ACAGCCACCAAACTCCTCAG 59.891 55.000 0.00 0.00 0.00 3.35
47 48 0.109342 CAGCCACCAAACTCCTCAGT 59.891 55.000 0.00 0.00 0.00 3.41
48 49 0.109342 AGCCACCAAACTCCTCAGTG 59.891 55.000 0.00 0.00 31.06 3.66
49 50 0.108585 GCCACCAAACTCCTCAGTGA 59.891 55.000 0.00 0.00 31.06 3.41
50 51 1.884235 CCACCAAACTCCTCAGTGAC 58.116 55.000 0.00 0.00 31.06 3.67
51 52 1.140852 CCACCAAACTCCTCAGTGACA 59.859 52.381 0.00 0.00 31.06 3.58
52 53 2.421388 CCACCAAACTCCTCAGTGACAA 60.421 50.000 0.00 0.00 31.06 3.18
53 54 3.278574 CACCAAACTCCTCAGTGACAAA 58.721 45.455 0.00 0.00 31.06 2.83
54 55 3.694072 CACCAAACTCCTCAGTGACAAAA 59.306 43.478 0.00 0.00 31.06 2.44
55 56 4.339247 CACCAAACTCCTCAGTGACAAAAT 59.661 41.667 0.00 0.00 31.06 1.82
56 57 5.530915 CACCAAACTCCTCAGTGACAAAATA 59.469 40.000 0.00 0.00 31.06 1.40
57 58 5.531287 ACCAAACTCCTCAGTGACAAAATAC 59.469 40.000 0.00 0.00 31.06 1.89
58 59 5.048713 CCAAACTCCTCAGTGACAAAATACC 60.049 44.000 0.00 0.00 31.06 2.73
59 60 5.568620 AACTCCTCAGTGACAAAATACCT 57.431 39.130 0.00 0.00 31.06 3.08
60 61 4.899502 ACTCCTCAGTGACAAAATACCTG 58.100 43.478 0.00 0.00 0.00 4.00
61 62 4.256920 CTCCTCAGTGACAAAATACCTGG 58.743 47.826 0.00 0.00 0.00 4.45
62 63 3.650942 TCCTCAGTGACAAAATACCTGGT 59.349 43.478 4.05 4.05 0.00 4.00
63 64 3.753272 CCTCAGTGACAAAATACCTGGTG 59.247 47.826 10.23 0.00 0.00 4.17
64 65 3.750371 TCAGTGACAAAATACCTGGTGG 58.250 45.455 10.23 0.00 39.83 4.61
65 66 2.228822 CAGTGACAAAATACCTGGTGGC 59.771 50.000 10.23 0.00 36.63 5.01
66 67 2.158534 AGTGACAAAATACCTGGTGGCA 60.159 45.455 10.23 0.00 36.63 4.92
67 68 2.625790 GTGACAAAATACCTGGTGGCAA 59.374 45.455 10.23 0.00 36.63 4.52
68 69 3.068873 GTGACAAAATACCTGGTGGCAAA 59.931 43.478 10.23 0.00 36.63 3.68
69 70 3.900601 TGACAAAATACCTGGTGGCAAAT 59.099 39.130 10.23 0.00 36.63 2.32
70 71 4.244862 GACAAAATACCTGGTGGCAAATG 58.755 43.478 10.23 3.84 36.63 2.32
71 72 3.007831 ACAAAATACCTGGTGGCAAATGG 59.992 43.478 10.23 0.00 36.63 3.16
72 73 2.621556 AATACCTGGTGGCAAATGGT 57.378 45.000 10.23 10.60 36.63 3.55
73 74 3.748645 AATACCTGGTGGCAAATGGTA 57.251 42.857 10.23 13.58 37.62 3.25
74 75 3.971468 ATACCTGGTGGCAAATGGTAT 57.029 42.857 10.23 16.07 38.66 2.73
75 76 5.396057 AATACCTGGTGGCAAATGGTATA 57.604 39.130 19.78 3.93 41.48 1.47
76 77 3.971468 ACCTGGTGGCAAATGGTATAT 57.029 42.857 0.00 0.00 36.63 0.86
77 78 4.264373 ACCTGGTGGCAAATGGTATATT 57.736 40.909 0.00 0.00 36.63 1.28
78 79 4.619679 ACCTGGTGGCAAATGGTATATTT 58.380 39.130 0.00 0.00 36.63 1.40
79 80 5.029474 ACCTGGTGGCAAATGGTATATTTT 58.971 37.500 0.00 0.00 36.63 1.82
80 81 5.128663 ACCTGGTGGCAAATGGTATATTTTC 59.871 40.000 0.00 0.00 36.63 2.29
81 82 5.363580 CCTGGTGGCAAATGGTATATTTTCT 59.636 40.000 0.00 0.00 0.00 2.52
82 83 6.127083 CCTGGTGGCAAATGGTATATTTTCTT 60.127 38.462 0.00 0.00 0.00 2.52
83 84 6.638610 TGGTGGCAAATGGTATATTTTCTTG 58.361 36.000 0.00 0.00 0.00 3.02
84 85 6.212388 TGGTGGCAAATGGTATATTTTCTTGT 59.788 34.615 0.00 0.00 0.00 3.16
85 86 7.397476 TGGTGGCAAATGGTATATTTTCTTGTA 59.603 33.333 0.00 0.00 0.00 2.41
86 87 7.920682 GGTGGCAAATGGTATATTTTCTTGTAG 59.079 37.037 0.00 0.00 0.00 2.74
87 88 8.466798 GTGGCAAATGGTATATTTTCTTGTAGT 58.533 33.333 0.00 0.00 0.00 2.73
88 89 8.465999 TGGCAAATGGTATATTTTCTTGTAGTG 58.534 33.333 0.00 0.00 0.00 2.74
89 90 8.466798 GGCAAATGGTATATTTTCTTGTAGTGT 58.533 33.333 0.00 0.00 0.00 3.55
90 91 9.855021 GCAAATGGTATATTTTCTTGTAGTGTT 57.145 29.630 0.00 0.00 0.00 3.32
101 102 7.737972 TTTCTTGTAGTGTTATTGCTAAGCA 57.262 32.000 0.00 0.00 36.47 3.91
102 103 7.921786 TTCTTGTAGTGTTATTGCTAAGCAT 57.078 32.000 0.00 0.00 38.76 3.79
103 104 7.539712 TCTTGTAGTGTTATTGCTAAGCATC 57.460 36.000 0.00 0.00 38.76 3.91
104 105 6.538742 TCTTGTAGTGTTATTGCTAAGCATCC 59.461 38.462 0.00 0.00 38.76 3.51
105 106 5.989477 TGTAGTGTTATTGCTAAGCATCCT 58.011 37.500 0.00 0.00 38.76 3.24
106 107 6.414732 TGTAGTGTTATTGCTAAGCATCCTT 58.585 36.000 0.00 0.00 38.76 3.36
107 108 6.538742 TGTAGTGTTATTGCTAAGCATCCTTC 59.461 38.462 0.00 0.00 38.76 3.46
108 109 5.500234 AGTGTTATTGCTAAGCATCCTTCA 58.500 37.500 0.00 0.00 38.76 3.02
109 110 6.125029 AGTGTTATTGCTAAGCATCCTTCAT 58.875 36.000 0.00 0.00 38.76 2.57
110 111 6.604795 AGTGTTATTGCTAAGCATCCTTCATT 59.395 34.615 0.00 0.00 38.76 2.57
111 112 7.123247 AGTGTTATTGCTAAGCATCCTTCATTT 59.877 33.333 0.00 0.00 38.76 2.32
112 113 8.405531 GTGTTATTGCTAAGCATCCTTCATTTA 58.594 33.333 0.00 0.00 38.76 1.40
113 114 8.623903 TGTTATTGCTAAGCATCCTTCATTTAG 58.376 33.333 0.00 0.00 38.76 1.85
114 115 8.624776 GTTATTGCTAAGCATCCTTCATTTAGT 58.375 33.333 0.00 0.00 38.76 2.24
115 116 6.441093 TTGCTAAGCATCCTTCATTTAGTG 57.559 37.500 0.00 0.00 38.76 2.74
116 117 5.744171 TGCTAAGCATCCTTCATTTAGTGA 58.256 37.500 0.00 0.00 31.71 3.41
117 118 6.359804 TGCTAAGCATCCTTCATTTAGTGAT 58.640 36.000 0.00 0.00 32.68 3.06
118 119 6.830324 TGCTAAGCATCCTTCATTTAGTGATT 59.170 34.615 0.00 0.00 32.68 2.57
119 120 7.340232 TGCTAAGCATCCTTCATTTAGTGATTT 59.660 33.333 0.00 0.00 32.68 2.17
120 121 8.840321 GCTAAGCATCCTTCATTTAGTGATTTA 58.160 33.333 0.00 0.00 36.54 1.40
122 123 7.269477 AGCATCCTTCATTTAGTGATTTAGC 57.731 36.000 0.00 0.00 36.54 3.09
123 124 6.830324 AGCATCCTTCATTTAGTGATTTAGCA 59.170 34.615 0.00 0.00 36.54 3.49
124 125 7.340232 AGCATCCTTCATTTAGTGATTTAGCAA 59.660 33.333 0.00 0.00 36.54 3.91
125 126 7.433425 GCATCCTTCATTTAGTGATTTAGCAAC 59.567 37.037 0.00 0.00 36.54 4.17
126 127 8.680903 CATCCTTCATTTAGTGATTTAGCAACT 58.319 33.333 0.00 0.00 36.54 3.16
127 128 9.905713 ATCCTTCATTTAGTGATTTAGCAACTA 57.094 29.630 0.00 0.00 36.54 2.24
128 129 9.733556 TCCTTCATTTAGTGATTTAGCAACTAA 57.266 29.630 0.00 0.00 36.54 2.24
145 146 5.138125 AACTAAAGTTGTCCATGCATTGG 57.862 39.130 0.00 2.32 40.97 3.16
146 147 4.151883 ACTAAAGTTGTCCATGCATTGGT 58.848 39.130 0.00 0.00 46.52 3.67
147 148 3.389925 AAAGTTGTCCATGCATTGGTG 57.610 42.857 0.00 0.00 46.52 4.17
148 149 1.259609 AGTTGTCCATGCATTGGTGG 58.740 50.000 0.00 0.00 46.52 4.61
149 150 0.247185 GTTGTCCATGCATTGGTGGG 59.753 55.000 0.00 0.00 46.52 4.61
150 151 1.543065 TTGTCCATGCATTGGTGGGC 61.543 55.000 0.00 0.00 46.52 5.36
151 152 1.683365 GTCCATGCATTGGTGGGCT 60.683 57.895 0.00 0.00 46.52 5.19
152 153 1.078891 TCCATGCATTGGTGGGCTT 59.921 52.632 0.00 0.00 46.52 4.35
153 154 0.971959 TCCATGCATTGGTGGGCTTC 60.972 55.000 0.00 0.00 46.52 3.86
154 155 0.974010 CCATGCATTGGTGGGCTTCT 60.974 55.000 0.00 0.00 40.99 2.85
155 156 0.899720 CATGCATTGGTGGGCTTCTT 59.100 50.000 0.00 0.00 0.00 2.52
156 157 1.134907 CATGCATTGGTGGGCTTCTTC 60.135 52.381 0.00 0.00 0.00 2.87
157 158 0.899717 TGCATTGGTGGGCTTCTTCC 60.900 55.000 0.00 0.00 0.00 3.46
158 159 0.899717 GCATTGGTGGGCTTCTTCCA 60.900 55.000 0.00 0.00 0.00 3.53
159 160 1.856629 CATTGGTGGGCTTCTTCCAT 58.143 50.000 0.00 0.00 36.58 3.41
160 161 2.181975 CATTGGTGGGCTTCTTCCATT 58.818 47.619 0.00 0.00 36.58 3.16
161 162 2.397044 TTGGTGGGCTTCTTCCATTT 57.603 45.000 0.00 0.00 36.58 2.32
162 163 3.534357 TTGGTGGGCTTCTTCCATTTA 57.466 42.857 0.00 0.00 36.58 1.40
163 164 3.534357 TGGTGGGCTTCTTCCATTTAA 57.466 42.857 0.00 0.00 36.58 1.52
164 165 3.430453 TGGTGGGCTTCTTCCATTTAAG 58.570 45.455 0.00 0.00 36.58 1.85
165 166 3.181423 TGGTGGGCTTCTTCCATTTAAGT 60.181 43.478 0.00 0.00 36.58 2.24
166 167 3.193479 GGTGGGCTTCTTCCATTTAAGTG 59.807 47.826 0.00 0.00 36.58 3.16
167 168 3.826729 GTGGGCTTCTTCCATTTAAGTGT 59.173 43.478 0.00 0.00 36.58 3.55
168 169 4.280929 GTGGGCTTCTTCCATTTAAGTGTT 59.719 41.667 0.00 0.00 36.58 3.32
169 170 4.898861 TGGGCTTCTTCCATTTAAGTGTTT 59.101 37.500 0.00 0.00 0.00 2.83
170 171 5.365314 TGGGCTTCTTCCATTTAAGTGTTTT 59.635 36.000 0.00 0.00 0.00 2.43
171 172 6.126911 TGGGCTTCTTCCATTTAAGTGTTTTT 60.127 34.615 0.00 0.00 0.00 1.94
172 173 6.423905 GGGCTTCTTCCATTTAAGTGTTTTTC 59.576 38.462 0.00 0.00 0.00 2.29
173 174 6.423905 GGCTTCTTCCATTTAAGTGTTTTTCC 59.576 38.462 0.00 0.00 0.00 3.13
174 175 7.210174 GCTTCTTCCATTTAAGTGTTTTTCCT 58.790 34.615 0.00 0.00 0.00 3.36
175 176 8.357402 GCTTCTTCCATTTAAGTGTTTTTCCTA 58.643 33.333 0.00 0.00 0.00 2.94
176 177 9.899226 CTTCTTCCATTTAAGTGTTTTTCCTAG 57.101 33.333 0.00 0.00 0.00 3.02
177 178 8.404107 TCTTCCATTTAAGTGTTTTTCCTAGG 57.596 34.615 0.82 0.82 0.00 3.02
178 179 8.002459 TCTTCCATTTAAGTGTTTTTCCTAGGT 58.998 33.333 9.08 0.00 0.00 3.08
179 180 8.541899 TTCCATTTAAGTGTTTTTCCTAGGTT 57.458 30.769 9.08 0.00 0.00 3.50
180 181 8.173542 TCCATTTAAGTGTTTTTCCTAGGTTC 57.826 34.615 9.08 0.00 0.00 3.62
181 182 7.231925 TCCATTTAAGTGTTTTTCCTAGGTTCC 59.768 37.037 9.08 0.00 0.00 3.62
182 183 6.964807 TTTAAGTGTTTTTCCTAGGTTCCC 57.035 37.500 9.08 0.00 0.00 3.97
183 184 3.136009 AGTGTTTTTCCTAGGTTCCCG 57.864 47.619 9.08 0.00 0.00 5.14
184 185 1.538512 GTGTTTTTCCTAGGTTCCCGC 59.461 52.381 9.08 0.00 0.00 6.13
185 186 0.800631 GTTTTTCCTAGGTTCCCGCG 59.199 55.000 9.08 0.00 0.00 6.46
186 187 0.956902 TTTTTCCTAGGTTCCCGCGC 60.957 55.000 9.08 0.00 0.00 6.86
187 188 1.833787 TTTTCCTAGGTTCCCGCGCT 61.834 55.000 9.08 0.00 0.00 5.92
188 189 1.833787 TTTCCTAGGTTCCCGCGCTT 61.834 55.000 9.08 0.00 0.00 4.68
189 190 2.511600 CCTAGGTTCCCGCGCTTG 60.512 66.667 5.56 0.00 0.00 4.01
190 191 2.577059 CTAGGTTCCCGCGCTTGA 59.423 61.111 5.56 0.00 0.00 3.02
191 192 1.810030 CTAGGTTCCCGCGCTTGAC 60.810 63.158 5.56 0.00 0.00 3.18
192 193 2.501223 CTAGGTTCCCGCGCTTGACA 62.501 60.000 5.56 0.00 0.00 3.58
193 194 1.895020 TAGGTTCCCGCGCTTGACAT 61.895 55.000 5.56 0.00 0.00 3.06
194 195 2.332654 GGTTCCCGCGCTTGACATT 61.333 57.895 5.56 0.00 0.00 2.71
195 196 1.154225 GTTCCCGCGCTTGACATTG 60.154 57.895 5.56 0.00 0.00 2.82
196 197 1.599518 TTCCCGCGCTTGACATTGT 60.600 52.632 5.56 0.00 0.00 2.71
197 198 1.169661 TTCCCGCGCTTGACATTGTT 61.170 50.000 5.56 0.00 0.00 2.83
198 199 1.169661 TCCCGCGCTTGACATTGTTT 61.170 50.000 5.56 0.00 0.00 2.83
199 200 0.729140 CCCGCGCTTGACATTGTTTC 60.729 55.000 5.56 0.00 0.00 2.78
200 201 0.238289 CCGCGCTTGACATTGTTTCT 59.762 50.000 5.56 0.00 0.00 2.52
201 202 1.334960 CCGCGCTTGACATTGTTTCTT 60.335 47.619 5.56 0.00 0.00 2.52
202 203 1.971962 CGCGCTTGACATTGTTTCTTC 59.028 47.619 5.56 0.00 0.00 2.87
203 204 2.349817 CGCGCTTGACATTGTTTCTTCT 60.350 45.455 5.56 0.00 0.00 2.85
204 205 3.632189 GCGCTTGACATTGTTTCTTCTT 58.368 40.909 0.00 0.00 0.00 2.52
205 206 3.423206 GCGCTTGACATTGTTTCTTCTTG 59.577 43.478 0.00 0.00 0.00 3.02
206 207 3.976942 CGCTTGACATTGTTTCTTCTTGG 59.023 43.478 0.00 0.00 0.00 3.61
207 208 4.301628 GCTTGACATTGTTTCTTCTTGGG 58.698 43.478 0.00 0.00 0.00 4.12
208 209 4.797275 GCTTGACATTGTTTCTTCTTGGGG 60.797 45.833 0.00 0.00 0.00 4.96
209 210 2.627699 TGACATTGTTTCTTCTTGGGGC 59.372 45.455 0.00 0.00 0.00 5.80
210 211 2.893489 GACATTGTTTCTTCTTGGGGCT 59.107 45.455 0.00 0.00 0.00 5.19
211 212 4.079253 GACATTGTTTCTTCTTGGGGCTA 58.921 43.478 0.00 0.00 0.00 3.93
212 213 3.826729 ACATTGTTTCTTCTTGGGGCTAC 59.173 43.478 0.00 0.00 0.00 3.58
213 214 2.579410 TGTTTCTTCTTGGGGCTACC 57.421 50.000 0.00 0.00 40.81 3.18
223 224 3.741325 GGGCTACCACACCCATCT 58.259 61.111 0.00 0.00 46.22 2.90
224 225 1.527370 GGGCTACCACACCCATCTC 59.473 63.158 0.00 0.00 46.22 2.75
225 226 0.983378 GGGCTACCACACCCATCTCT 60.983 60.000 0.00 0.00 46.22 3.10
226 227 0.912486 GGCTACCACACCCATCTCTT 59.088 55.000 0.00 0.00 0.00 2.85
227 228 1.282157 GGCTACCACACCCATCTCTTT 59.718 52.381 0.00 0.00 0.00 2.52
228 229 2.633488 GCTACCACACCCATCTCTTTC 58.367 52.381 0.00 0.00 0.00 2.62
229 230 2.681097 GCTACCACACCCATCTCTTTCC 60.681 54.545 0.00 0.00 0.00 3.13
230 231 1.747444 ACCACACCCATCTCTTTCCT 58.253 50.000 0.00 0.00 0.00 3.36
231 232 1.630878 ACCACACCCATCTCTTTCCTC 59.369 52.381 0.00 0.00 0.00 3.71
232 233 1.912043 CCACACCCATCTCTTTCCTCT 59.088 52.381 0.00 0.00 0.00 3.69
233 234 2.307098 CCACACCCATCTCTTTCCTCTT 59.693 50.000 0.00 0.00 0.00 2.85
234 235 3.519510 CCACACCCATCTCTTTCCTCTTA 59.480 47.826 0.00 0.00 0.00 2.10
235 236 4.019321 CCACACCCATCTCTTTCCTCTTAA 60.019 45.833 0.00 0.00 0.00 1.85
236 237 5.339530 CCACACCCATCTCTTTCCTCTTAAT 60.340 44.000 0.00 0.00 0.00 1.40
237 238 6.183347 CACACCCATCTCTTTCCTCTTAATT 58.817 40.000 0.00 0.00 0.00 1.40
238 239 7.338710 CACACCCATCTCTTTCCTCTTAATTA 58.661 38.462 0.00 0.00 0.00 1.40
239 240 7.281100 CACACCCATCTCTTTCCTCTTAATTAC 59.719 40.741 0.00 0.00 0.00 1.89
240 241 6.768381 CACCCATCTCTTTCCTCTTAATTACC 59.232 42.308 0.00 0.00 0.00 2.85
241 242 6.678857 ACCCATCTCTTTCCTCTTAATTACCT 59.321 38.462 0.00 0.00 0.00 3.08
242 243 7.184753 ACCCATCTCTTTCCTCTTAATTACCTT 59.815 37.037 0.00 0.00 0.00 3.50
243 244 7.500559 CCCATCTCTTTCCTCTTAATTACCTTG 59.499 40.741 0.00 0.00 0.00 3.61
244 245 7.012799 CCATCTCTTTCCTCTTAATTACCTTGC 59.987 40.741 0.00 0.00 0.00 4.01
245 246 6.415573 TCTCTTTCCTCTTAATTACCTTGCC 58.584 40.000 0.00 0.00 0.00 4.52
246 247 6.012858 TCTCTTTCCTCTTAATTACCTTGCCA 60.013 38.462 0.00 0.00 0.00 4.92
247 248 5.944007 TCTTTCCTCTTAATTACCTTGCCAC 59.056 40.000 0.00 0.00 0.00 5.01
248 249 4.919774 TCCTCTTAATTACCTTGCCACA 57.080 40.909 0.00 0.00 0.00 4.17
249 250 5.450818 TCCTCTTAATTACCTTGCCACAT 57.549 39.130 0.00 0.00 0.00 3.21
250 251 5.437060 TCCTCTTAATTACCTTGCCACATC 58.563 41.667 0.00 0.00 0.00 3.06
251 252 5.045213 TCCTCTTAATTACCTTGCCACATCA 60.045 40.000 0.00 0.00 0.00 3.07
252 253 5.829924 CCTCTTAATTACCTTGCCACATCAT 59.170 40.000 0.00 0.00 0.00 2.45
253 254 6.016777 CCTCTTAATTACCTTGCCACATCATC 60.017 42.308 0.00 0.00 0.00 2.92
254 255 6.662755 TCTTAATTACCTTGCCACATCATCT 58.337 36.000 0.00 0.00 0.00 2.90
255 256 7.118723 TCTTAATTACCTTGCCACATCATCTT 58.881 34.615 0.00 0.00 0.00 2.40
256 257 7.615365 TCTTAATTACCTTGCCACATCATCTTT 59.385 33.333 0.00 0.00 0.00 2.52
257 258 6.610075 AATTACCTTGCCACATCATCTTTT 57.390 33.333 0.00 0.00 0.00 2.27
258 259 6.610075 ATTACCTTGCCACATCATCTTTTT 57.390 33.333 0.00 0.00 0.00 1.94
288 289 3.416156 TGGCAACATTAGCACATGTACA 58.584 40.909 0.00 0.00 46.17 2.90
289 290 3.823304 TGGCAACATTAGCACATGTACAA 59.177 39.130 0.00 0.00 46.17 2.41
290 291 4.082841 TGGCAACATTAGCACATGTACAAG 60.083 41.667 0.00 0.00 46.17 3.16
291 292 4.414852 GCAACATTAGCACATGTACAAGG 58.585 43.478 0.00 0.00 36.30 3.61
292 293 4.082787 GCAACATTAGCACATGTACAAGGT 60.083 41.667 0.00 0.00 36.30 3.50
293 294 5.393124 CAACATTAGCACATGTACAAGGTG 58.607 41.667 20.69 20.69 36.30 4.00
294 295 4.009675 ACATTAGCACATGTACAAGGTGG 58.990 43.478 24.08 13.99 35.51 4.61
295 296 4.260985 CATTAGCACATGTACAAGGTGGA 58.739 43.478 24.08 8.58 33.25 4.02
296 297 2.479566 AGCACATGTACAAGGTGGAG 57.520 50.000 24.08 8.51 33.25 3.86
297 298 0.804989 GCACATGTACAAGGTGGAGC 59.195 55.000 24.08 13.20 33.25 4.70
298 299 1.881925 GCACATGTACAAGGTGGAGCA 60.882 52.381 24.08 0.00 33.25 4.26
299 300 2.715046 CACATGTACAAGGTGGAGCAT 58.285 47.619 18.41 0.00 0.00 3.79
300 301 3.084039 CACATGTACAAGGTGGAGCATT 58.916 45.455 18.41 0.00 0.00 3.56
301 302 3.084039 ACATGTACAAGGTGGAGCATTG 58.916 45.455 0.00 0.00 43.74 2.82
302 303 2.198827 TGTACAAGGTGGAGCATTGG 57.801 50.000 0.00 0.00 42.57 3.16
303 304 1.271871 TGTACAAGGTGGAGCATTGGG 60.272 52.381 0.00 0.00 42.57 4.12
304 305 1.004277 GTACAAGGTGGAGCATTGGGA 59.996 52.381 0.00 0.00 42.57 4.37
305 306 0.038744 ACAAGGTGGAGCATTGGGAG 59.961 55.000 0.00 0.00 42.57 4.30
306 307 0.329261 CAAGGTGGAGCATTGGGAGA 59.671 55.000 0.00 0.00 35.45 3.71
307 308 1.064166 CAAGGTGGAGCATTGGGAGAT 60.064 52.381 0.00 0.00 35.45 2.75
308 309 0.549950 AGGTGGAGCATTGGGAGATG 59.450 55.000 0.00 0.00 0.00 2.90
318 319 5.126396 GCATTGGGAGATGCCTTATAAAC 57.874 43.478 0.00 0.00 45.16 2.01
319 320 4.021981 GCATTGGGAGATGCCTTATAAACC 60.022 45.833 0.00 0.00 45.16 3.27
320 321 4.871871 TTGGGAGATGCCTTATAAACCA 57.128 40.909 0.00 0.00 36.66 3.67
321 322 4.437682 TGGGAGATGCCTTATAAACCAG 57.562 45.455 0.00 0.00 36.66 4.00
322 323 4.044308 TGGGAGATGCCTTATAAACCAGA 58.956 43.478 0.00 0.00 36.66 3.86
323 324 4.476846 TGGGAGATGCCTTATAAACCAGAA 59.523 41.667 0.00 0.00 36.66 3.02
324 325 5.044476 TGGGAGATGCCTTATAAACCAGAAA 60.044 40.000 0.00 0.00 36.66 2.52
325 326 5.532779 GGGAGATGCCTTATAAACCAGAAAG 59.467 44.000 0.00 0.00 36.66 2.62
326 327 5.532779 GGAGATGCCTTATAAACCAGAAAGG 59.467 44.000 0.00 0.00 45.67 3.11
327 328 6.327386 AGATGCCTTATAAACCAGAAAGGA 57.673 37.500 4.19 0.00 40.85 3.36
328 329 6.360618 AGATGCCTTATAAACCAGAAAGGAG 58.639 40.000 4.19 0.00 40.85 3.69
329 330 4.855340 TGCCTTATAAACCAGAAAGGAGG 58.145 43.478 4.19 0.00 40.85 4.30
330 331 4.207955 GCCTTATAAACCAGAAAGGAGGG 58.792 47.826 4.19 0.00 40.85 4.30
331 332 4.793201 CCTTATAAACCAGAAAGGAGGGG 58.207 47.826 0.00 0.00 40.85 4.79
332 333 4.386424 CCTTATAAACCAGAAAGGAGGGGG 60.386 50.000 0.00 0.00 40.85 5.40
333 334 2.143231 TAAACCAGAAAGGAGGGGGT 57.857 50.000 0.00 0.00 41.22 4.95
351 352 9.478238 GGAGGGGGTATTACAAAGTAAATAAAA 57.522 33.333 0.00 0.00 0.00 1.52
438 439 0.037326 TGCTGAATCACACGTCCTCC 60.037 55.000 0.00 0.00 0.00 4.30
463 464 7.014230 CCCTTTCTATCCTTCACAAAAACTTCA 59.986 37.037 0.00 0.00 0.00 3.02
464 465 7.862873 CCTTTCTATCCTTCACAAAAACTTCAC 59.137 37.037 0.00 0.00 0.00 3.18
465 466 6.877611 TCTATCCTTCACAAAAACTTCACC 57.122 37.500 0.00 0.00 0.00 4.02
489 490 3.135348 TCACAATAATGCTCCTCCTCCTG 59.865 47.826 0.00 0.00 0.00 3.86
495 496 0.685785 TGCTCCTCCTCCTGCTACTG 60.686 60.000 0.00 0.00 0.00 2.74
496 497 1.398958 GCTCCTCCTCCTGCTACTGG 61.399 65.000 0.00 0.00 0.00 4.00
531 534 2.629617 CCAATGAAAGTTGCCAAGAGGT 59.370 45.455 0.00 0.00 37.19 3.85
725 906 1.521681 CGACGGCCCAGATCCTTTC 60.522 63.158 0.00 0.00 0.00 2.62
728 909 2.603580 GGCCCAGATCCTTTCCCC 59.396 66.667 0.00 0.00 0.00 4.81
758 941 4.825679 CCCCCTCCTCCCTCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
775 961 4.933064 CCCTCGCCGTCGCAGATC 62.933 72.222 0.00 0.00 40.67 2.75
790 976 1.075896 GATCCCCACCCTCGTCTCT 60.076 63.158 0.00 0.00 0.00 3.10
802 988 2.163509 CTCGTCTCTTCCTCTCCACAA 58.836 52.381 0.00 0.00 0.00 3.33
805 991 1.620819 GTCTCTTCCTCTCCACAAGCA 59.379 52.381 0.00 0.00 0.00 3.91
809 995 1.071385 CTTCCTCTCCACAAGCACACT 59.929 52.381 0.00 0.00 0.00 3.55
870 1056 4.441695 CAGCTCCGCTTCCTCGCA 62.442 66.667 0.00 0.00 36.40 5.10
873 1059 4.069232 CTCCGCTTCCTCGCACCA 62.069 66.667 0.00 0.00 0.00 4.17
889 1075 1.135803 CACCATTTACGGACTTTGCGG 60.136 52.381 0.00 0.00 34.75 5.69
917 1103 2.106332 GGTAGGGTGGATCGTGCG 59.894 66.667 0.00 0.00 0.00 5.34
987 1177 2.670148 GGTGTGGGGTGGAGCTAGG 61.670 68.421 0.00 0.00 0.00 3.02
995 1185 1.615424 GTGGAGCTAGGTGGGGGAA 60.615 63.158 0.00 0.00 0.00 3.97
996 1186 1.615424 TGGAGCTAGGTGGGGGAAC 60.615 63.158 0.00 0.00 0.00 3.62
1022 1224 2.437343 GGCGAACGACGAGCTTGAG 61.437 63.158 8.31 3.78 45.77 3.02
1085 1287 4.500116 GGACGAGGACGAGCAGGC 62.500 72.222 0.00 0.00 42.66 4.85
1263 1465 1.397692 GACTACTCCAAGGTCGAGACG 59.602 57.143 0.00 0.00 0.00 4.18
1352 1554 2.488087 AAGTACGTGAGCTGTCCGCC 62.488 60.000 0.00 0.00 40.39 6.13
1389 1591 1.093972 CGTGCATCAATGGCCAAGTA 58.906 50.000 10.96 0.00 0.00 2.24
1391 1593 1.105457 TGCATCAATGGCCAAGTAGC 58.895 50.000 10.96 11.66 0.00 3.58
1396 1598 0.527565 CAATGGCCAAGTAGCACCAC 59.472 55.000 10.96 0.00 34.36 4.16
1397 1599 0.405585 AATGGCCAAGTAGCACCACT 59.594 50.000 10.96 0.00 34.36 4.00
1398 1600 1.285280 ATGGCCAAGTAGCACCACTA 58.715 50.000 10.96 0.00 34.36 2.74
1399 1601 0.613260 TGGCCAAGTAGCACCACTAG 59.387 55.000 0.61 0.00 0.00 2.57
1400 1602 0.744771 GGCCAAGTAGCACCACTAGC 60.745 60.000 0.00 0.00 0.00 3.42
1401 1603 0.744771 GCCAAGTAGCACCACTAGCC 60.745 60.000 0.00 0.00 0.00 3.93
1402 1604 0.613260 CCAAGTAGCACCACTAGCCA 59.387 55.000 0.00 0.00 0.00 4.75
1403 1605 1.003118 CCAAGTAGCACCACTAGCCAA 59.997 52.381 0.00 0.00 0.00 4.52
1404 1606 2.356125 CCAAGTAGCACCACTAGCCAAT 60.356 50.000 0.00 0.00 0.00 3.16
1405 1607 3.118408 CCAAGTAGCACCACTAGCCAATA 60.118 47.826 0.00 0.00 0.00 1.90
1406 1608 4.444876 CCAAGTAGCACCACTAGCCAATAT 60.445 45.833 0.00 0.00 0.00 1.28
1407 1609 5.221641 CCAAGTAGCACCACTAGCCAATATA 60.222 44.000 0.00 0.00 0.00 0.86
1528 1742 1.891919 TGGAAGGACAAGTGCACGC 60.892 57.895 12.01 2.32 0.00 5.34
1731 1947 3.870007 ACGCATGTATTACTCTCGTACG 58.130 45.455 9.53 9.53 0.00 3.67
1732 1948 3.310774 ACGCATGTATTACTCTCGTACGT 59.689 43.478 16.05 0.00 0.00 3.57
1733 1949 4.507756 ACGCATGTATTACTCTCGTACGTA 59.492 41.667 16.05 4.02 0.00 3.57
1876 2100 2.232941 ACTTGGAGCTCGAATCCGTTTA 59.767 45.455 11.86 0.00 39.91 2.01
1899 2123 2.022934 AGATCGTTCCTTCCTACGGTC 58.977 52.381 0.00 0.00 45.64 4.79
1974 2207 1.970917 GCTTTGTGCATCCTCGACGG 61.971 60.000 0.00 0.00 42.31 4.79
1987 2220 1.258982 CTCGACGGTTCATATTGCAGC 59.741 52.381 0.00 0.00 0.00 5.25
2004 2240 0.179134 AGCACTGCGTAGACCGAATC 60.179 55.000 7.78 0.00 39.56 2.52
2012 2248 2.104144 CGTAGACCGAATCCGTTAACG 58.896 52.381 20.99 20.99 39.56 3.18
2044 2280 8.746751 GCACTTTAATGAAGAGAGAAAAACAAC 58.253 33.333 0.00 0.00 38.77 3.32
2093 2329 2.358582 TGGTGATGTGTGCAGTCAAAAG 59.641 45.455 0.00 0.00 0.00 2.27
2094 2330 2.287788 GGTGATGTGTGCAGTCAAAAGG 60.288 50.000 0.00 0.00 0.00 3.11
2095 2331 1.955778 TGATGTGTGCAGTCAAAAGGG 59.044 47.619 0.00 0.00 0.00 3.95
2184 2422 4.026804 CAGTCGCGTGGTTACTAATCAATC 60.027 45.833 5.77 0.00 0.00 2.67
2261 3086 1.702957 TGGCTGTGGGCTTTACTACTT 59.297 47.619 0.00 0.00 41.46 2.24
2262 3087 2.084546 GGCTGTGGGCTTTACTACTTG 58.915 52.381 0.00 0.00 41.46 3.16
2312 3137 8.918961 ATAAGACAAAATTCAGACGACTCTAG 57.081 34.615 0.00 0.00 0.00 2.43
2313 3138 6.334102 AGACAAAATTCAGACGACTCTAGT 57.666 37.500 0.00 0.00 0.00 2.57
2314 3139 7.450124 AGACAAAATTCAGACGACTCTAGTA 57.550 36.000 0.00 0.00 0.00 1.82
2315 3140 7.306953 AGACAAAATTCAGACGACTCTAGTAC 58.693 38.462 0.00 0.00 0.00 2.73
2361 3189 9.238368 AGTGCAAGTATATAATACTCTCTCCTC 57.762 37.037 0.00 0.00 0.00 3.71
2397 3227 9.981114 AGTTAAACCCTTTAATTTGATCAAGTG 57.019 29.630 8.41 0.00 37.44 3.16
2437 3267 5.235305 AGATTACAACACCAAATCGATGC 57.765 39.130 0.00 0.00 35.30 3.91
2449 3279 5.069914 ACCAAATCGATGCCACTACATACTA 59.930 40.000 0.00 0.00 0.00 1.82
2451 3281 6.216569 CAAATCGATGCCACTACATACTACT 58.783 40.000 0.00 0.00 0.00 2.57
2452 3282 5.630661 ATCGATGCCACTACATACTACTC 57.369 43.478 0.00 0.00 0.00 2.59
2453 3283 4.715713 TCGATGCCACTACATACTACTCT 58.284 43.478 0.00 0.00 0.00 3.24
2455 3285 4.757657 CGATGCCACTACATACTACTCTCT 59.242 45.833 0.00 0.00 0.00 3.10
2456 3286 5.106869 CGATGCCACTACATACTACTCTCTC 60.107 48.000 0.00 0.00 0.00 3.20
2458 3288 3.499157 GCCACTACATACTACTCTCTCCG 59.501 52.174 0.00 0.00 0.00 4.63
2459 3289 4.706035 CCACTACATACTACTCTCTCCGT 58.294 47.826 0.00 0.00 0.00 4.69
2460 3290 4.751098 CCACTACATACTACTCTCTCCGTC 59.249 50.000 0.00 0.00 0.00 4.79
2461 3291 4.751098 CACTACATACTACTCTCTCCGTCC 59.249 50.000 0.00 0.00 0.00 4.79
2462 3292 3.211718 ACATACTACTCTCTCCGTCCC 57.788 52.381 0.00 0.00 0.00 4.46
2463 3293 2.508716 ACATACTACTCTCTCCGTCCCA 59.491 50.000 0.00 0.00 0.00 4.37
2464 3294 3.138653 ACATACTACTCTCTCCGTCCCAT 59.861 47.826 0.00 0.00 0.00 4.00
2465 3295 4.350225 ACATACTACTCTCTCCGTCCCATA 59.650 45.833 0.00 0.00 0.00 2.74
2466 3296 3.947612 ACTACTCTCTCCGTCCCATAA 57.052 47.619 0.00 0.00 0.00 1.90
2467 3297 4.456662 ACTACTCTCTCCGTCCCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
2468 3298 5.579753 ACTACTCTCTCCGTCCCATAATA 57.420 43.478 0.00 0.00 0.00 0.98
2469 3299 6.142259 ACTACTCTCTCCGTCCCATAATAT 57.858 41.667 0.00 0.00 0.00 1.28
2470 3300 7.268212 ACTACTCTCTCCGTCCCATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
2471 3301 7.696981 ACTACTCTCTCCGTCCCATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
2472 3302 8.168725 ACTACTCTCTCCGTCCCATAATATAAA 58.831 37.037 0.00 0.00 0.00 1.40
2473 3303 7.469537 ACTCTCTCCGTCCCATAATATAAAG 57.530 40.000 0.00 0.00 0.00 1.85
2474 3304 7.011382 ACTCTCTCCGTCCCATAATATAAAGT 58.989 38.462 0.00 0.00 0.00 2.66
2475 3305 7.039644 ACTCTCTCCGTCCCATAATATAAAGTG 60.040 40.741 0.00 0.00 0.00 3.16
2476 3306 6.781014 TCTCTCCGTCCCATAATATAAAGTGT 59.219 38.462 0.00 0.00 0.00 3.55
2477 3307 7.289317 TCTCTCCGTCCCATAATATAAAGTGTT 59.711 37.037 0.00 0.00 0.00 3.32
2478 3308 8.481492 TCTCCGTCCCATAATATAAAGTGTTA 57.519 34.615 0.00 0.00 0.00 2.41
2479 3309 9.096823 TCTCCGTCCCATAATATAAAGTGTTAT 57.903 33.333 0.00 0.00 34.26 1.89
2480 3310 9.720769 CTCCGTCCCATAATATAAAGTGTTATT 57.279 33.333 0.00 0.00 32.10 1.40
2485 3315 9.947433 TCCCATAATATAAAGTGTTATTACGGG 57.053 33.333 7.27 7.27 41.74 5.28
2486 3316 9.947433 CCCATAATATAAAGTGTTATTACGGGA 57.053 33.333 7.68 0.00 42.44 5.14
2496 3326 8.625786 AAGTGTTATTACGGGAAGTATTTTGT 57.374 30.769 0.00 0.00 34.88 2.83
2497 3327 9.723601 AAGTGTTATTACGGGAAGTATTTTGTA 57.276 29.630 0.00 0.00 34.88 2.41
2498 3328 9.723601 AGTGTTATTACGGGAAGTATTTTGTAA 57.276 29.630 0.00 0.00 34.88 2.41
2589 3419 8.347771 TCTATTCATTTTCAATCATAGCAGTGC 58.652 33.333 7.13 7.13 0.00 4.40
2590 3420 5.900865 TCATTTTCAATCATAGCAGTGCA 57.099 34.783 19.20 3.62 0.00 4.57
2591 3421 6.270156 TCATTTTCAATCATAGCAGTGCAA 57.730 33.333 19.20 0.00 0.00 4.08
2592 3422 6.689554 TCATTTTCAATCATAGCAGTGCAAA 58.310 32.000 19.20 5.13 0.00 3.68
2593 3423 6.809689 TCATTTTCAATCATAGCAGTGCAAAG 59.190 34.615 19.20 6.12 0.00 2.77
2594 3424 5.963176 TTTCAATCATAGCAGTGCAAAGA 57.037 34.783 19.20 11.69 0.00 2.52
2595 3425 5.963176 TTCAATCATAGCAGTGCAAAGAA 57.037 34.783 19.20 8.26 0.00 2.52
2596 3426 5.300969 TCAATCATAGCAGTGCAAAGAAC 57.699 39.130 19.20 0.00 0.00 3.01
2597 3427 4.761227 TCAATCATAGCAGTGCAAAGAACA 59.239 37.500 19.20 0.00 0.00 3.18
2598 3428 5.241285 TCAATCATAGCAGTGCAAAGAACAA 59.759 36.000 19.20 0.00 0.00 2.83
2599 3429 5.710513 ATCATAGCAGTGCAAAGAACAAA 57.289 34.783 19.20 0.00 0.00 2.83
2600 3430 5.512753 TCATAGCAGTGCAAAGAACAAAA 57.487 34.783 19.20 0.00 0.00 2.44
2601 3431 6.088016 TCATAGCAGTGCAAAGAACAAAAT 57.912 33.333 19.20 0.00 0.00 1.82
2602 3432 7.213216 TCATAGCAGTGCAAAGAACAAAATA 57.787 32.000 19.20 0.00 0.00 1.40
2603 3433 7.307694 TCATAGCAGTGCAAAGAACAAAATAG 58.692 34.615 19.20 0.00 0.00 1.73
2604 3434 4.874970 AGCAGTGCAAAGAACAAAATAGG 58.125 39.130 19.20 0.00 0.00 2.57
2605 3435 4.342092 AGCAGTGCAAAGAACAAAATAGGT 59.658 37.500 19.20 0.00 0.00 3.08
2606 3436 5.534654 AGCAGTGCAAAGAACAAAATAGGTA 59.465 36.000 19.20 0.00 0.00 3.08
2607 3437 6.040391 AGCAGTGCAAAGAACAAAATAGGTAA 59.960 34.615 19.20 0.00 0.00 2.85
2608 3438 6.868339 GCAGTGCAAAGAACAAAATAGGTAAT 59.132 34.615 11.09 0.00 0.00 1.89
2609 3439 8.026607 GCAGTGCAAAGAACAAAATAGGTAATA 58.973 33.333 11.09 0.00 0.00 0.98
2610 3440 9.906660 CAGTGCAAAGAACAAAATAGGTAATAA 57.093 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.674068 TGTAGATGTACTAATTGCAACCATTTA 57.326 29.630 0.00 0.00 32.49 1.40
4 5 8.574251 TGTAGATGTACTAATTGCAACCATTT 57.426 30.769 0.00 0.00 32.49 2.32
5 6 7.201732 GCTGTAGATGTACTAATTGCAACCATT 60.202 37.037 0.00 0.00 32.49 3.16
6 7 6.260936 GCTGTAGATGTACTAATTGCAACCAT 59.739 38.462 0.00 0.00 32.49 3.55
7 8 5.584649 GCTGTAGATGTACTAATTGCAACCA 59.415 40.000 0.00 0.00 32.49 3.67
8 9 5.007724 GGCTGTAGATGTACTAATTGCAACC 59.992 44.000 0.00 0.00 32.49 3.77
9 10 5.584649 TGGCTGTAGATGTACTAATTGCAAC 59.415 40.000 0.00 0.00 32.49 4.17
10 11 5.584649 GTGGCTGTAGATGTACTAATTGCAA 59.415 40.000 0.00 0.00 32.49 4.08
11 12 5.116180 GTGGCTGTAGATGTACTAATTGCA 58.884 41.667 1.30 0.00 32.49 4.08
12 13 4.511826 GGTGGCTGTAGATGTACTAATTGC 59.488 45.833 1.30 0.00 32.49 3.56
13 14 5.670485 TGGTGGCTGTAGATGTACTAATTG 58.330 41.667 1.30 0.00 32.49 2.32
14 15 5.950544 TGGTGGCTGTAGATGTACTAATT 57.049 39.130 1.30 0.00 32.49 1.40
15 16 5.950544 TTGGTGGCTGTAGATGTACTAAT 57.049 39.130 1.30 0.00 32.49 1.73
16 17 5.247564 AGTTTGGTGGCTGTAGATGTACTAA 59.752 40.000 1.30 0.00 32.49 2.24
17 18 4.775780 AGTTTGGTGGCTGTAGATGTACTA 59.224 41.667 1.30 0.00 0.00 1.82
18 19 3.583086 AGTTTGGTGGCTGTAGATGTACT 59.417 43.478 1.30 0.00 0.00 2.73
19 20 3.933332 GAGTTTGGTGGCTGTAGATGTAC 59.067 47.826 0.00 0.00 0.00 2.90
20 21 3.055385 GGAGTTTGGTGGCTGTAGATGTA 60.055 47.826 0.00 0.00 0.00 2.29
21 22 2.290323 GGAGTTTGGTGGCTGTAGATGT 60.290 50.000 0.00 0.00 0.00 3.06
22 23 2.026822 AGGAGTTTGGTGGCTGTAGATG 60.027 50.000 0.00 0.00 0.00 2.90
23 24 2.237392 GAGGAGTTTGGTGGCTGTAGAT 59.763 50.000 0.00 0.00 0.00 1.98
24 25 1.623811 GAGGAGTTTGGTGGCTGTAGA 59.376 52.381 0.00 0.00 0.00 2.59
25 26 1.347707 TGAGGAGTTTGGTGGCTGTAG 59.652 52.381 0.00 0.00 0.00 2.74
26 27 1.347707 CTGAGGAGTTTGGTGGCTGTA 59.652 52.381 0.00 0.00 0.00 2.74
27 28 0.109342 CTGAGGAGTTTGGTGGCTGT 59.891 55.000 0.00 0.00 0.00 4.40
28 29 0.109342 ACTGAGGAGTTTGGTGGCTG 59.891 55.000 0.00 0.00 0.00 4.85
29 30 0.109342 CACTGAGGAGTTTGGTGGCT 59.891 55.000 0.00 0.00 0.00 4.75
30 31 0.108585 TCACTGAGGAGTTTGGTGGC 59.891 55.000 0.00 0.00 0.00 5.01
31 32 1.140852 TGTCACTGAGGAGTTTGGTGG 59.859 52.381 0.00 0.00 0.00 4.61
32 33 2.620251 TGTCACTGAGGAGTTTGGTG 57.380 50.000 0.00 0.00 0.00 4.17
33 34 3.644966 TTTGTCACTGAGGAGTTTGGT 57.355 42.857 0.00 0.00 0.00 3.67
34 35 5.048713 GGTATTTTGTCACTGAGGAGTTTGG 60.049 44.000 0.00 0.00 0.00 3.28
35 36 5.765182 AGGTATTTTGTCACTGAGGAGTTTG 59.235 40.000 0.00 0.00 0.00 2.93
36 37 5.765182 CAGGTATTTTGTCACTGAGGAGTTT 59.235 40.000 0.00 0.00 0.00 2.66
37 38 5.308825 CAGGTATTTTGTCACTGAGGAGTT 58.691 41.667 0.00 0.00 0.00 3.01
38 39 4.263068 CCAGGTATTTTGTCACTGAGGAGT 60.263 45.833 0.00 0.00 0.00 3.85
39 40 4.256920 CCAGGTATTTTGTCACTGAGGAG 58.743 47.826 0.00 0.00 0.00 3.69
40 41 3.650942 ACCAGGTATTTTGTCACTGAGGA 59.349 43.478 0.00 0.00 0.00 3.71
41 42 3.753272 CACCAGGTATTTTGTCACTGAGG 59.247 47.826 0.00 0.00 0.00 3.86
42 43 3.753272 CCACCAGGTATTTTGTCACTGAG 59.247 47.826 0.00 0.00 0.00 3.35
43 44 3.750371 CCACCAGGTATTTTGTCACTGA 58.250 45.455 0.00 0.00 0.00 3.41
44 45 2.228822 GCCACCAGGTATTTTGTCACTG 59.771 50.000 0.00 0.00 37.19 3.66
45 46 2.158534 TGCCACCAGGTATTTTGTCACT 60.159 45.455 0.00 0.00 37.19 3.41
46 47 2.235016 TGCCACCAGGTATTTTGTCAC 58.765 47.619 0.00 0.00 37.19 3.67
47 48 2.666272 TGCCACCAGGTATTTTGTCA 57.334 45.000 0.00 0.00 37.19 3.58
48 49 4.244862 CATTTGCCACCAGGTATTTTGTC 58.755 43.478 0.00 0.00 37.19 3.18
49 50 3.007831 CCATTTGCCACCAGGTATTTTGT 59.992 43.478 0.00 0.00 37.19 2.83
50 51 3.007831 ACCATTTGCCACCAGGTATTTTG 59.992 43.478 0.00 0.00 37.19 2.44
51 52 3.247162 ACCATTTGCCACCAGGTATTTT 58.753 40.909 0.00 0.00 37.19 1.82
52 53 2.901291 ACCATTTGCCACCAGGTATTT 58.099 42.857 0.00 0.00 37.19 1.40
53 54 2.621556 ACCATTTGCCACCAGGTATT 57.378 45.000 0.00 0.00 37.19 1.89
54 55 3.971468 ATACCATTTGCCACCAGGTAT 57.029 42.857 0.00 0.00 39.92 2.73
55 56 5.396057 AATATACCATTTGCCACCAGGTA 57.604 39.130 0.00 0.00 39.00 3.08
56 57 3.971468 ATATACCATTTGCCACCAGGT 57.029 42.857 0.00 0.00 37.19 4.00
57 58 5.363580 AGAAAATATACCATTTGCCACCAGG 59.636 40.000 0.00 0.00 38.23 4.45
58 59 6.469782 AGAAAATATACCATTTGCCACCAG 57.530 37.500 0.00 0.00 0.00 4.00
59 60 6.212388 ACAAGAAAATATACCATTTGCCACCA 59.788 34.615 0.00 0.00 0.00 4.17
60 61 6.639563 ACAAGAAAATATACCATTTGCCACC 58.360 36.000 0.00 0.00 0.00 4.61
61 62 8.466798 ACTACAAGAAAATATACCATTTGCCAC 58.533 33.333 0.00 0.00 0.00 5.01
62 63 8.465999 CACTACAAGAAAATATACCATTTGCCA 58.534 33.333 0.00 0.00 0.00 4.92
63 64 8.466798 ACACTACAAGAAAATATACCATTTGCC 58.533 33.333 0.00 0.00 0.00 4.52
64 65 9.855021 AACACTACAAGAAAATATACCATTTGC 57.145 29.630 0.00 0.00 0.00 3.68
75 76 8.792633 TGCTTAGCAATAACACTACAAGAAAAT 58.207 29.630 3.67 0.00 34.76 1.82
76 77 8.160521 TGCTTAGCAATAACACTACAAGAAAA 57.839 30.769 3.67 0.00 34.76 2.29
77 78 7.737972 TGCTTAGCAATAACACTACAAGAAA 57.262 32.000 3.67 0.00 34.76 2.52
78 79 7.065803 GGATGCTTAGCAATAACACTACAAGAA 59.934 37.037 12.08 0.00 43.62 2.52
79 80 6.538742 GGATGCTTAGCAATAACACTACAAGA 59.461 38.462 12.08 0.00 43.62 3.02
80 81 6.540189 AGGATGCTTAGCAATAACACTACAAG 59.460 38.462 12.08 0.00 43.62 3.16
81 82 6.414732 AGGATGCTTAGCAATAACACTACAA 58.585 36.000 12.08 0.00 43.62 2.41
82 83 5.989477 AGGATGCTTAGCAATAACACTACA 58.011 37.500 12.08 0.00 43.62 2.74
83 84 6.538742 TGAAGGATGCTTAGCAATAACACTAC 59.461 38.462 12.08 0.00 43.62 2.73
84 85 6.649155 TGAAGGATGCTTAGCAATAACACTA 58.351 36.000 12.08 0.00 43.62 2.74
85 86 5.500234 TGAAGGATGCTTAGCAATAACACT 58.500 37.500 12.08 0.56 43.62 3.55
86 87 5.818136 TGAAGGATGCTTAGCAATAACAC 57.182 39.130 12.08 2.59 43.62 3.32
87 88 7.408756 AAATGAAGGATGCTTAGCAATAACA 57.591 32.000 12.08 8.75 43.62 2.41
88 89 8.624776 ACTAAATGAAGGATGCTTAGCAATAAC 58.375 33.333 12.08 1.79 43.62 1.89
89 90 8.623903 CACTAAATGAAGGATGCTTAGCAATAA 58.376 33.333 12.08 0.00 43.62 1.40
90 91 7.992608 TCACTAAATGAAGGATGCTTAGCAATA 59.007 33.333 12.08 0.00 36.80 1.90
91 92 6.830324 TCACTAAATGAAGGATGCTTAGCAAT 59.170 34.615 12.08 0.00 36.80 3.56
92 93 6.179756 TCACTAAATGAAGGATGCTTAGCAA 58.820 36.000 12.08 0.00 36.80 3.91
93 94 5.744171 TCACTAAATGAAGGATGCTTAGCA 58.256 37.500 10.09 10.09 37.39 3.49
94 95 6.874288 ATCACTAAATGAAGGATGCTTAGC 57.126 37.500 0.00 0.00 41.93 3.09
96 97 8.840321 GCTAAATCACTAAATGAAGGATGCTTA 58.160 33.333 0.00 0.00 41.93 3.09
97 98 7.340232 TGCTAAATCACTAAATGAAGGATGCTT 59.660 33.333 0.00 0.00 41.93 3.91
98 99 6.830324 TGCTAAATCACTAAATGAAGGATGCT 59.170 34.615 0.00 0.00 41.93 3.79
99 100 7.031226 TGCTAAATCACTAAATGAAGGATGC 57.969 36.000 0.00 0.00 41.93 3.91
100 101 8.680903 AGTTGCTAAATCACTAAATGAAGGATG 58.319 33.333 0.00 0.00 41.93 3.51
101 102 8.814038 AGTTGCTAAATCACTAAATGAAGGAT 57.186 30.769 0.00 0.00 41.93 3.24
102 103 9.733556 TTAGTTGCTAAATCACTAAATGAAGGA 57.266 29.630 0.00 0.00 41.93 3.36
136 137 0.899720 AAGAAGCCCACCAATGCATG 59.100 50.000 0.00 0.00 0.00 4.06
137 138 1.188863 GAAGAAGCCCACCAATGCAT 58.811 50.000 0.00 0.00 0.00 3.96
138 139 0.899717 GGAAGAAGCCCACCAATGCA 60.900 55.000 0.00 0.00 0.00 3.96
139 140 0.899717 TGGAAGAAGCCCACCAATGC 60.900 55.000 0.00 0.00 0.00 3.56
140 141 1.856629 ATGGAAGAAGCCCACCAATG 58.143 50.000 0.00 0.00 36.36 2.82
141 142 2.629017 AATGGAAGAAGCCCACCAAT 57.371 45.000 0.00 0.00 36.36 3.16
142 143 2.397044 AAATGGAAGAAGCCCACCAA 57.603 45.000 0.00 0.00 36.36 3.67
143 144 3.181423 ACTTAAATGGAAGAAGCCCACCA 60.181 43.478 0.00 0.00 36.36 4.17
144 145 3.193479 CACTTAAATGGAAGAAGCCCACC 59.807 47.826 0.00 0.00 36.36 4.61
145 146 3.826729 ACACTTAAATGGAAGAAGCCCAC 59.173 43.478 0.00 0.00 36.36 4.61
146 147 4.112634 ACACTTAAATGGAAGAAGCCCA 57.887 40.909 0.00 0.00 38.19 5.36
147 148 5.468540 AAACACTTAAATGGAAGAAGCCC 57.531 39.130 0.00 0.00 0.00 5.19
148 149 6.423905 GGAAAAACACTTAAATGGAAGAAGCC 59.576 38.462 0.00 0.00 0.00 4.35
149 150 7.210174 AGGAAAAACACTTAAATGGAAGAAGC 58.790 34.615 0.00 0.00 0.00 3.86
150 151 9.899226 CTAGGAAAAACACTTAAATGGAAGAAG 57.101 33.333 0.00 0.00 0.00 2.85
151 152 8.856103 CCTAGGAAAAACACTTAAATGGAAGAA 58.144 33.333 1.05 0.00 0.00 2.52
152 153 8.002459 ACCTAGGAAAAACACTTAAATGGAAGA 58.998 33.333 17.98 0.00 0.00 2.87
153 154 8.178313 ACCTAGGAAAAACACTTAAATGGAAG 57.822 34.615 17.98 0.00 0.00 3.46
154 155 8.541899 AACCTAGGAAAAACACTTAAATGGAA 57.458 30.769 17.98 0.00 0.00 3.53
155 156 7.231925 GGAACCTAGGAAAAACACTTAAATGGA 59.768 37.037 17.98 0.00 0.00 3.41
156 157 7.375834 GGAACCTAGGAAAAACACTTAAATGG 58.624 38.462 17.98 0.00 0.00 3.16
177 178 1.154225 CAATGTCAAGCGCGGGAAC 60.154 57.895 8.83 0.00 0.00 3.62
178 179 1.169661 AACAATGTCAAGCGCGGGAA 61.170 50.000 8.83 0.00 0.00 3.97
179 180 1.169661 AAACAATGTCAAGCGCGGGA 61.170 50.000 8.83 0.00 0.00 5.14
180 181 0.729140 GAAACAATGTCAAGCGCGGG 60.729 55.000 8.83 0.00 0.00 6.13
181 182 0.238289 AGAAACAATGTCAAGCGCGG 59.762 50.000 8.83 0.00 0.00 6.46
182 183 1.971962 GAAGAAACAATGTCAAGCGCG 59.028 47.619 0.00 0.00 0.00 6.86
183 184 3.273919 AGAAGAAACAATGTCAAGCGC 57.726 42.857 0.00 0.00 0.00 5.92
184 185 3.976942 CCAAGAAGAAACAATGTCAAGCG 59.023 43.478 0.00 0.00 0.00 4.68
185 186 4.301628 CCCAAGAAGAAACAATGTCAAGC 58.698 43.478 0.00 0.00 0.00 4.01
186 187 4.797275 GCCCCAAGAAGAAACAATGTCAAG 60.797 45.833 0.00 0.00 0.00 3.02
187 188 3.069443 GCCCCAAGAAGAAACAATGTCAA 59.931 43.478 0.00 0.00 0.00 3.18
188 189 2.627699 GCCCCAAGAAGAAACAATGTCA 59.372 45.455 0.00 0.00 0.00 3.58
189 190 2.893489 AGCCCCAAGAAGAAACAATGTC 59.107 45.455 0.00 0.00 0.00 3.06
190 191 2.962859 AGCCCCAAGAAGAAACAATGT 58.037 42.857 0.00 0.00 0.00 2.71
191 192 3.193479 GGTAGCCCCAAGAAGAAACAATG 59.807 47.826 0.00 0.00 0.00 2.82
192 193 3.181423 TGGTAGCCCCAAGAAGAAACAAT 60.181 43.478 0.00 0.00 41.50 2.71
193 194 2.175931 TGGTAGCCCCAAGAAGAAACAA 59.824 45.455 0.00 0.00 41.50 2.83
194 195 1.777878 TGGTAGCCCCAAGAAGAAACA 59.222 47.619 0.00 0.00 41.50 2.83
195 196 2.579410 TGGTAGCCCCAAGAAGAAAC 57.421 50.000 0.00 0.00 41.50 2.78
205 206 1.984288 GAGATGGGTGTGGTAGCCCC 61.984 65.000 0.00 0.00 46.65 5.80
206 207 0.983378 AGAGATGGGTGTGGTAGCCC 60.983 60.000 0.00 0.00 46.65 5.19
208 209 2.633488 GAAAGAGATGGGTGTGGTAGC 58.367 52.381 0.00 0.00 0.00 3.58
209 210 2.840651 AGGAAAGAGATGGGTGTGGTAG 59.159 50.000 0.00 0.00 0.00 3.18
210 211 2.838202 GAGGAAAGAGATGGGTGTGGTA 59.162 50.000 0.00 0.00 0.00 3.25
211 212 1.630878 GAGGAAAGAGATGGGTGTGGT 59.369 52.381 0.00 0.00 0.00 4.16
212 213 1.912043 AGAGGAAAGAGATGGGTGTGG 59.088 52.381 0.00 0.00 0.00 4.17
213 214 3.710209 AAGAGGAAAGAGATGGGTGTG 57.290 47.619 0.00 0.00 0.00 3.82
214 215 6.394345 AATTAAGAGGAAAGAGATGGGTGT 57.606 37.500 0.00 0.00 0.00 4.16
215 216 6.768381 GGTAATTAAGAGGAAAGAGATGGGTG 59.232 42.308 0.00 0.00 0.00 4.61
216 217 6.678857 AGGTAATTAAGAGGAAAGAGATGGGT 59.321 38.462 0.00 0.00 0.00 4.51
217 218 7.142995 AGGTAATTAAGAGGAAAGAGATGGG 57.857 40.000 0.00 0.00 0.00 4.00
218 219 7.012799 GCAAGGTAATTAAGAGGAAAGAGATGG 59.987 40.741 0.00 0.00 0.00 3.51
219 220 7.012799 GGCAAGGTAATTAAGAGGAAAGAGATG 59.987 40.741 0.00 0.00 0.00 2.90
220 221 7.057264 GGCAAGGTAATTAAGAGGAAAGAGAT 58.943 38.462 0.00 0.00 0.00 2.75
221 222 6.012858 TGGCAAGGTAATTAAGAGGAAAGAGA 60.013 38.462 0.00 0.00 0.00 3.10
222 223 6.094186 GTGGCAAGGTAATTAAGAGGAAAGAG 59.906 42.308 0.00 0.00 0.00 2.85
223 224 5.944007 GTGGCAAGGTAATTAAGAGGAAAGA 59.056 40.000 0.00 0.00 0.00 2.52
224 225 5.710099 TGTGGCAAGGTAATTAAGAGGAAAG 59.290 40.000 0.00 0.00 0.00 2.62
225 226 5.636123 TGTGGCAAGGTAATTAAGAGGAAA 58.364 37.500 0.00 0.00 0.00 3.13
226 227 5.249780 TGTGGCAAGGTAATTAAGAGGAA 57.750 39.130 0.00 0.00 0.00 3.36
227 228 4.919774 TGTGGCAAGGTAATTAAGAGGA 57.080 40.909 0.00 0.00 0.00 3.71
228 229 5.192927 TGATGTGGCAAGGTAATTAAGAGG 58.807 41.667 0.00 0.00 0.00 3.69
229 230 6.769822 AGATGATGTGGCAAGGTAATTAAGAG 59.230 38.462 0.00 0.00 0.00 2.85
230 231 6.662755 AGATGATGTGGCAAGGTAATTAAGA 58.337 36.000 0.00 0.00 0.00 2.10
231 232 6.949352 AGATGATGTGGCAAGGTAATTAAG 57.051 37.500 0.00 0.00 0.00 1.85
232 233 7.716799 AAAGATGATGTGGCAAGGTAATTAA 57.283 32.000 0.00 0.00 0.00 1.40
233 234 7.716799 AAAAGATGATGTGGCAAGGTAATTA 57.283 32.000 0.00 0.00 0.00 1.40
234 235 6.610075 AAAAGATGATGTGGCAAGGTAATT 57.390 33.333 0.00 0.00 0.00 1.40
235 236 6.610075 AAAAAGATGATGTGGCAAGGTAAT 57.390 33.333 0.00 0.00 0.00 1.89
261 262 3.016031 TGTGCTAATGTTGCCATGTAGG 58.984 45.455 0.00 0.00 41.84 3.18
262 263 4.096833 ACATGTGCTAATGTTGCCATGTAG 59.903 41.667 15.57 0.00 43.44 2.74
263 264 4.015764 ACATGTGCTAATGTTGCCATGTA 58.984 39.130 15.57 0.00 43.44 2.29
264 265 2.827322 ACATGTGCTAATGTTGCCATGT 59.173 40.909 0.00 13.09 42.07 3.21
265 266 3.513680 ACATGTGCTAATGTTGCCATG 57.486 42.857 0.00 12.21 37.50 3.66
266 267 4.015764 TGTACATGTGCTAATGTTGCCAT 58.984 39.130 15.25 0.00 41.09 4.40
267 268 3.416156 TGTACATGTGCTAATGTTGCCA 58.584 40.909 15.25 3.63 41.09 4.92
268 269 4.414852 CTTGTACATGTGCTAATGTTGCC 58.585 43.478 15.25 1.55 41.09 4.52
269 270 4.082787 ACCTTGTACATGTGCTAATGTTGC 60.083 41.667 15.25 5.37 41.09 4.17
270 271 5.393124 CACCTTGTACATGTGCTAATGTTG 58.607 41.667 15.25 1.75 41.09 3.33
271 272 4.458989 CCACCTTGTACATGTGCTAATGTT 59.541 41.667 15.25 0.00 41.09 2.71
272 273 4.009675 CCACCTTGTACATGTGCTAATGT 58.990 43.478 15.25 9.35 43.21 2.71
273 274 4.260985 TCCACCTTGTACATGTGCTAATG 58.739 43.478 15.25 8.50 0.00 1.90
274 275 4.517285 CTCCACCTTGTACATGTGCTAAT 58.483 43.478 15.25 0.00 0.00 1.73
275 276 3.868369 GCTCCACCTTGTACATGTGCTAA 60.868 47.826 15.25 6.99 0.00 3.09
276 277 2.354704 GCTCCACCTTGTACATGTGCTA 60.355 50.000 15.25 6.70 0.00 3.49
277 278 1.611673 GCTCCACCTTGTACATGTGCT 60.612 52.381 15.25 0.00 0.00 4.40
278 279 0.804989 GCTCCACCTTGTACATGTGC 59.195 55.000 9.11 8.01 0.00 4.57
279 280 2.183478 TGCTCCACCTTGTACATGTG 57.817 50.000 9.11 15.58 0.00 3.21
280 281 3.084039 CAATGCTCCACCTTGTACATGT 58.916 45.455 2.69 2.69 0.00 3.21
281 282 2.424601 CCAATGCTCCACCTTGTACATG 59.575 50.000 0.00 0.00 0.00 3.21
282 283 2.621407 CCCAATGCTCCACCTTGTACAT 60.621 50.000 0.00 0.00 0.00 2.29
283 284 1.271871 CCCAATGCTCCACCTTGTACA 60.272 52.381 0.00 0.00 0.00 2.90
284 285 1.004277 TCCCAATGCTCCACCTTGTAC 59.996 52.381 0.00 0.00 0.00 2.90
285 286 1.281867 CTCCCAATGCTCCACCTTGTA 59.718 52.381 0.00 0.00 0.00 2.41
286 287 0.038744 CTCCCAATGCTCCACCTTGT 59.961 55.000 0.00 0.00 0.00 3.16
287 288 0.329261 TCTCCCAATGCTCCACCTTG 59.671 55.000 0.00 0.00 0.00 3.61
288 289 1.064166 CATCTCCCAATGCTCCACCTT 60.064 52.381 0.00 0.00 0.00 3.50
289 290 0.549950 CATCTCCCAATGCTCCACCT 59.450 55.000 0.00 0.00 0.00 4.00
290 291 1.105759 GCATCTCCCAATGCTCCACC 61.106 60.000 1.74 0.00 46.81 4.61
291 292 2.412605 GCATCTCCCAATGCTCCAC 58.587 57.895 1.74 0.00 46.81 4.02
292 293 4.993307 GCATCTCCCAATGCTCCA 57.007 55.556 1.74 0.00 46.81 3.86
297 298 5.139727 TGGTTTATAAGGCATCTCCCAATG 58.860 41.667 0.00 0.00 34.51 2.82
298 299 5.134339 TCTGGTTTATAAGGCATCTCCCAAT 59.866 40.000 0.00 0.00 34.51 3.16
299 300 4.476846 TCTGGTTTATAAGGCATCTCCCAA 59.523 41.667 0.00 0.00 34.51 4.12
300 301 4.044308 TCTGGTTTATAAGGCATCTCCCA 58.956 43.478 0.00 0.00 34.51 4.37
301 302 4.706842 TCTGGTTTATAAGGCATCTCCC 57.293 45.455 0.00 0.00 34.51 4.30
302 303 5.532779 CCTTTCTGGTTTATAAGGCATCTCC 59.467 44.000 0.00 0.00 31.59 3.71
303 304 6.357367 TCCTTTCTGGTTTATAAGGCATCTC 58.643 40.000 0.00 0.00 37.62 2.75
304 305 6.327386 TCCTTTCTGGTTTATAAGGCATCT 57.673 37.500 0.00 0.00 37.62 2.90
305 306 5.532779 CCTCCTTTCTGGTTTATAAGGCATC 59.467 44.000 0.00 0.00 37.62 3.91
306 307 5.449553 CCTCCTTTCTGGTTTATAAGGCAT 58.550 41.667 0.00 0.00 37.62 4.40
307 308 4.325030 CCCTCCTTTCTGGTTTATAAGGCA 60.325 45.833 0.00 0.00 37.62 4.75
308 309 4.207955 CCCTCCTTTCTGGTTTATAAGGC 58.792 47.826 0.00 0.00 37.62 4.35
309 310 4.386424 CCCCCTCCTTTCTGGTTTATAAGG 60.386 50.000 0.00 0.00 38.78 2.69
310 311 4.229812 ACCCCCTCCTTTCTGGTTTATAAG 59.770 45.833 0.00 0.00 37.07 1.73
311 312 4.188733 ACCCCCTCCTTTCTGGTTTATAA 58.811 43.478 0.00 0.00 37.07 0.98
312 313 3.822880 ACCCCCTCCTTTCTGGTTTATA 58.177 45.455 0.00 0.00 37.07 0.98
313 314 2.655914 ACCCCCTCCTTTCTGGTTTAT 58.344 47.619 0.00 0.00 37.07 1.40
314 315 2.143231 ACCCCCTCCTTTCTGGTTTA 57.857 50.000 0.00 0.00 37.07 2.01
315 316 2.143231 TACCCCCTCCTTTCTGGTTT 57.857 50.000 0.00 0.00 37.07 3.27
316 317 2.378308 ATACCCCCTCCTTTCTGGTT 57.622 50.000 0.00 0.00 37.07 3.67
317 318 2.378308 AATACCCCCTCCTTTCTGGT 57.622 50.000 0.00 0.00 37.07 4.00
318 319 3.120108 TGTAATACCCCCTCCTTTCTGG 58.880 50.000 0.00 0.00 37.10 3.86
319 320 4.855298 TTGTAATACCCCCTCCTTTCTG 57.145 45.455 0.00 0.00 0.00 3.02
320 321 4.856182 ACTTTGTAATACCCCCTCCTTTCT 59.144 41.667 0.00 0.00 0.00 2.52
321 322 5.188988 ACTTTGTAATACCCCCTCCTTTC 57.811 43.478 0.00 0.00 0.00 2.62
322 323 6.723471 TTACTTTGTAATACCCCCTCCTTT 57.277 37.500 0.00 0.00 0.00 3.11
323 324 6.723471 TTTACTTTGTAATACCCCCTCCTT 57.277 37.500 0.00 0.00 0.00 3.36
324 325 6.920695 ATTTACTTTGTAATACCCCCTCCT 57.079 37.500 0.00 0.00 0.00 3.69
325 326 9.478238 TTTTATTTACTTTGTAATACCCCCTCC 57.522 33.333 0.00 0.00 0.00 4.30
351 352 6.515512 AGCAACTGTAGACCCCATATATTT 57.484 37.500 0.00 0.00 0.00 1.40
360 361 3.505836 GTTACGTAGCAACTGTAGACCC 58.494 50.000 4.37 0.00 0.00 4.46
438 439 7.862873 GTGAAGTTTTTGTGAAGGATAGAAAGG 59.137 37.037 0.00 0.00 0.00 3.11
463 464 2.420129 GGAGGAGCATTATTGTGACGGT 60.420 50.000 0.00 0.00 0.00 4.83
464 465 2.158900 AGGAGGAGCATTATTGTGACGG 60.159 50.000 0.00 0.00 0.00 4.79
465 466 3.126831 GAGGAGGAGCATTATTGTGACG 58.873 50.000 0.00 0.00 0.00 4.35
495 496 2.298729 TCATTGGCTGGTTTTTGCTACC 59.701 45.455 0.00 0.00 36.17 3.18
496 497 3.658757 TCATTGGCTGGTTTTTGCTAC 57.341 42.857 0.00 0.00 0.00 3.58
531 534 4.513692 CCGAATTTATTACGATTCCAGGCA 59.486 41.667 0.00 0.00 0.00 4.75
596 599 3.933900 ATTGCTGCGCGCTTGTTCG 62.934 57.895 33.29 13.84 40.11 3.95
728 909 2.058705 GGAGGGGGAAGATAAAGAGGG 58.941 57.143 0.00 0.00 0.00 4.30
758 941 4.933064 GATCTGCGACGGCGAGGG 62.933 72.222 18.90 2.53 44.10 4.30
765 951 4.530857 GGGTGGGGATCTGCGACG 62.531 72.222 0.00 0.00 0.00 5.12
775 961 2.359967 GGAAGAGACGAGGGTGGGG 61.360 68.421 0.00 0.00 0.00 4.96
790 976 1.131638 AGTGTGCTTGTGGAGAGGAA 58.868 50.000 0.00 0.00 0.00 3.36
802 988 1.595382 GGAAGTGCGTCAGTGTGCT 60.595 57.895 10.59 0.00 0.00 4.40
805 991 0.603707 CCATGGAAGTGCGTCAGTGT 60.604 55.000 5.56 0.00 0.00 3.55
809 995 2.359850 GGCCATGGAAGTGCGTCA 60.360 61.111 18.40 0.00 0.00 4.35
870 1056 1.161843 CCGCAAAGTCCGTAAATGGT 58.838 50.000 0.00 0.00 0.00 3.55
873 1059 1.641123 CGCCCGCAAAGTCCGTAAAT 61.641 55.000 0.00 0.00 0.00 1.40
889 1075 4.814294 CCCTACCAGACGCACGCC 62.814 72.222 0.00 0.00 0.00 5.68
898 1084 1.144057 GCACGATCCACCCTACCAG 59.856 63.158 0.00 0.00 0.00 4.00
901 1087 1.065928 CTCGCACGATCCACCCTAC 59.934 63.158 0.00 0.00 0.00 3.18
917 1103 1.062845 GACGTACGCCTCTGCTCTC 59.937 63.158 16.72 0.00 34.43 3.20
987 1177 2.511600 CTCATCGCGTTCCCCCAC 60.512 66.667 5.77 0.00 0.00 4.61
1041 1243 3.206246 AACACCACCGCCAACACG 61.206 61.111 0.00 0.00 0.00 4.49
1045 1247 2.203280 CTCCAACACCACCGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
1369 1571 0.895100 ACTTGGCCATTGATGCACGT 60.895 50.000 6.09 0.00 0.00 4.49
1370 1572 1.064505 CTACTTGGCCATTGATGCACG 59.935 52.381 6.09 0.00 0.00 5.34
1371 1573 1.202336 GCTACTTGGCCATTGATGCAC 60.202 52.381 6.09 0.00 0.00 4.57
1372 1574 1.105457 GCTACTTGGCCATTGATGCA 58.895 50.000 6.09 0.00 0.00 3.96
1373 1575 1.105457 TGCTACTTGGCCATTGATGC 58.895 50.000 6.09 8.81 0.00 3.91
1374 1576 1.406539 GGTGCTACTTGGCCATTGATG 59.593 52.381 6.09 0.00 0.00 3.07
1375 1577 1.005805 TGGTGCTACTTGGCCATTGAT 59.994 47.619 6.09 0.00 0.00 2.57
1378 1580 0.405585 AGTGGTGCTACTTGGCCATT 59.594 50.000 6.09 0.00 33.20 3.16
1389 1591 6.498651 AGATTAGTATATTGGCTAGTGGTGCT 59.501 38.462 0.00 0.00 0.00 4.40
1391 1593 7.671302 ACAGATTAGTATATTGGCTAGTGGTG 58.329 38.462 0.00 0.00 0.00 4.17
1396 1598 8.839310 AAGCAACAGATTAGTATATTGGCTAG 57.161 34.615 0.00 0.00 0.00 3.42
1397 1599 9.056005 CAAAGCAACAGATTAGTATATTGGCTA 57.944 33.333 0.00 0.00 0.00 3.93
1398 1600 7.469181 GCAAAGCAACAGATTAGTATATTGGCT 60.469 37.037 0.00 0.00 0.00 4.75
1399 1601 6.638468 GCAAAGCAACAGATTAGTATATTGGC 59.362 38.462 0.00 0.00 0.00 4.52
1400 1602 7.934457 AGCAAAGCAACAGATTAGTATATTGG 58.066 34.615 0.00 0.00 0.00 3.16
1401 1603 9.443283 GAAGCAAAGCAACAGATTAGTATATTG 57.557 33.333 0.00 0.00 0.00 1.90
1402 1604 9.401058 AGAAGCAAAGCAACAGATTAGTATATT 57.599 29.630 0.00 0.00 0.00 1.28
1403 1605 8.834465 CAGAAGCAAAGCAACAGATTAGTATAT 58.166 33.333 0.00 0.00 0.00 0.86
1404 1606 7.201644 GCAGAAGCAAAGCAACAGATTAGTATA 60.202 37.037 0.00 0.00 41.58 1.47
1405 1607 6.404074 GCAGAAGCAAAGCAACAGATTAGTAT 60.404 38.462 0.00 0.00 41.58 2.12
1406 1608 5.106555 GCAGAAGCAAAGCAACAGATTAGTA 60.107 40.000 0.00 0.00 41.58 1.82
1407 1609 4.320788 GCAGAAGCAAAGCAACAGATTAGT 60.321 41.667 0.00 0.00 41.58 2.24
1464 1678 2.039405 GCACTCCAGGCTGCAGAAG 61.039 63.158 20.43 5.38 33.31 2.85
1528 1742 1.153289 CCTCGCTCATGGACCTTGG 60.153 63.158 7.48 0.50 0.00 3.61
1876 2100 3.992260 CGTAGGAAGGAACGATCTCAT 57.008 47.619 0.00 0.00 41.55 2.90
1899 2123 5.776173 AACTAATCGATCAGTAGTGGAGG 57.224 43.478 0.46 0.00 0.00 4.30
1987 2220 0.866061 CGGATTCGGTCTACGCAGTG 60.866 60.000 0.00 0.00 45.73 3.66
2004 2240 6.579292 TCATTAAAGTGCAATTTCGTTAACGG 59.421 34.615 26.51 11.98 40.29 4.44
2012 2248 9.683069 TTTCTCTCTTCATTAAAGTGCAATTTC 57.317 29.630 16.40 0.00 36.31 2.17
2044 2280 7.275920 ACTTGATTACACTAGGCAAGATAAGG 58.724 38.462 0.00 0.00 39.27 2.69
2093 2329 3.370978 CGTAACAACAGTGATCACATCCC 59.629 47.826 27.02 0.00 0.00 3.85
2094 2330 3.994392 ACGTAACAACAGTGATCACATCC 59.006 43.478 27.02 0.33 0.00 3.51
2095 2331 4.666655 GCACGTAACAACAGTGATCACATC 60.667 45.833 27.02 0.73 38.06 3.06
2173 2411 3.492656 GCTGCTCACGGGATTGATTAGTA 60.493 47.826 0.00 0.00 0.00 1.82
2206 3023 4.391830 TGAGAGCCAACAAGCTTTAATACG 59.608 41.667 0.00 0.00 45.15 3.06
2312 3137 3.126171 TGCACATTGGAATAGTTGCGTAC 59.874 43.478 0.00 0.00 0.00 3.67
2313 3138 3.339141 TGCACATTGGAATAGTTGCGTA 58.661 40.909 0.00 0.00 0.00 4.42
2314 3139 2.158559 TGCACATTGGAATAGTTGCGT 58.841 42.857 0.00 0.00 0.00 5.24
2315 3140 2.917701 TGCACATTGGAATAGTTGCG 57.082 45.000 0.00 0.00 0.00 4.85
2361 3189 5.592104 AAAGGGTTTAACTGTGAACTTGG 57.408 39.130 0.00 0.00 0.00 3.61
2368 3196 9.757227 TTGATCAAATTAAAGGGTTTAACTGTG 57.243 29.630 5.45 0.00 37.88 3.66
2412 3242 6.687105 GCATCGATTTGGTGTTGTAATCTTAC 59.313 38.462 0.00 0.00 0.00 2.34
2413 3243 6.183360 GGCATCGATTTGGTGTTGTAATCTTA 60.183 38.462 0.00 0.00 0.00 2.10
2437 3267 4.706035 ACGGAGAGAGTAGTATGTAGTGG 58.294 47.826 0.00 0.00 0.00 4.00
2449 3279 7.011382 ACTTTATATTATGGGACGGAGAGAGT 58.989 38.462 0.00 0.00 0.00 3.24
2451 3281 6.781014 ACACTTTATATTATGGGACGGAGAGA 59.219 38.462 0.00 0.00 0.00 3.10
2452 3282 6.994221 ACACTTTATATTATGGGACGGAGAG 58.006 40.000 0.00 0.00 0.00 3.20
2453 3283 6.989155 ACACTTTATATTATGGGACGGAGA 57.011 37.500 0.00 0.00 0.00 3.71
2470 3300 9.070179 ACAAAATACTTCCCGTAATAACACTTT 57.930 29.630 0.00 0.00 0.00 2.66
2471 3301 8.625786 ACAAAATACTTCCCGTAATAACACTT 57.374 30.769 0.00 0.00 0.00 3.16
2472 3302 9.723601 TTACAAAATACTTCCCGTAATAACACT 57.276 29.630 0.00 0.00 0.00 3.55
2563 3393 8.347771 GCACTGCTATGATTGAAAATGAATAGA 58.652 33.333 0.00 0.00 0.00 1.98
2564 3394 8.132995 TGCACTGCTATGATTGAAAATGAATAG 58.867 33.333 1.98 0.00 0.00 1.73
2565 3395 7.998580 TGCACTGCTATGATTGAAAATGAATA 58.001 30.769 1.98 0.00 0.00 1.75
2566 3396 6.869695 TGCACTGCTATGATTGAAAATGAAT 58.130 32.000 1.98 0.00 0.00 2.57
2567 3397 6.270156 TGCACTGCTATGATTGAAAATGAA 57.730 33.333 1.98 0.00 0.00 2.57
2568 3398 5.900865 TGCACTGCTATGATTGAAAATGA 57.099 34.783 1.98 0.00 0.00 2.57
2569 3399 6.809689 TCTTTGCACTGCTATGATTGAAAATG 59.190 34.615 1.98 0.00 0.00 2.32
2570 3400 6.927416 TCTTTGCACTGCTATGATTGAAAAT 58.073 32.000 1.98 0.00 0.00 1.82
2571 3401 6.330004 TCTTTGCACTGCTATGATTGAAAA 57.670 33.333 1.98 0.00 0.00 2.29
2572 3402 5.963176 TCTTTGCACTGCTATGATTGAAA 57.037 34.783 1.98 0.00 0.00 2.69
2573 3403 5.241285 TGTTCTTTGCACTGCTATGATTGAA 59.759 36.000 1.98 0.00 0.00 2.69
2574 3404 4.761227 TGTTCTTTGCACTGCTATGATTGA 59.239 37.500 1.98 0.00 0.00 2.57
2575 3405 5.050644 TGTTCTTTGCACTGCTATGATTG 57.949 39.130 1.98 0.00 0.00 2.67
2576 3406 5.710513 TTGTTCTTTGCACTGCTATGATT 57.289 34.783 1.98 0.00 0.00 2.57
2577 3407 5.710513 TTTGTTCTTTGCACTGCTATGAT 57.289 34.783 1.98 0.00 0.00 2.45
2578 3408 5.512753 TTTTGTTCTTTGCACTGCTATGA 57.487 34.783 1.98 0.00 0.00 2.15
2579 3409 6.529125 CCTATTTTGTTCTTTGCACTGCTATG 59.471 38.462 1.98 0.00 0.00 2.23
2580 3410 6.209391 ACCTATTTTGTTCTTTGCACTGCTAT 59.791 34.615 1.98 0.00 0.00 2.97
2581 3411 5.534654 ACCTATTTTGTTCTTTGCACTGCTA 59.465 36.000 1.98 0.00 0.00 3.49
2582 3412 4.342092 ACCTATTTTGTTCTTTGCACTGCT 59.658 37.500 1.98 0.00 0.00 4.24
2583 3413 4.620982 ACCTATTTTGTTCTTTGCACTGC 58.379 39.130 0.00 0.00 0.00 4.40
2584 3414 9.906660 TTATTACCTATTTTGTTCTTTGCACTG 57.093 29.630 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.