>input_sequence_73955
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-ATGAGGCGAACGACGAGCTTGAGGGAGGTCGCGCCGCCGTCCGTGTTGGCGGTGGTGTTGGAGGACGAGGACGAGGACG
AGCAGGCCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGGCAGGACTGGCTGGCGGCCCTAGGCGGCGGC
AGCGGGGCCCCCGGGACGGACTGGCTCGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTCCGGCGCAACTC
GGCCGACTACTCCAAGGTCGAGACGGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTCCTCGGCCCCGGCCGCG
ACACCTTCATGTACAAGTACGTGAGCTGTCCGCCCCTGCATGCACGTGCAACGTGCATCAATGGCCAAGTAGCACCACTA
GCCAATATACT------------AATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGCGAGGCGGCCTT
CTGCAGCCTGGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGCCAAGGTCCATGAGCGAGG
CGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCTAA---------
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>chr5A_1_TraesCS5A01G191000
AATTAAATGGTTGCAATTAGTACATCTACAGCCACCAAACTCCTCAGTGACAAAATACCTGGTGGCAAATGGTATATTTT
CTTGTAGTGTTATTGCTAAGCATCCTTCATTTAGTGATTTAGCAACTAAAGTTGTCCATGCATTGGTGGGCTTCTTCCAT
TTAAGTGTTTTTCCTAGGTTCCCGCGCTTGACATTGTTTCTTCTTGGGGCTACCACACCCATCTCTTTCCTCTTAATTAC
CTTGCCACATCATCTTTTTTGCCTACATGGCAACATTAGCACATGTACAAGGTGGAGCATTGGGAGATGCCTTATAAACC
AGAAAGGAGGGGGTATTACAAAGTAAATAAAAAATATATGGGGTCTACAGTTGCTACGTAACCCAACCACAAACTCAGCT
TTCATCTCATGCATCGAGCTGCTGAATCACACGTCCTCCCTTTCTATCCTTCACAAAAACTTCACCGTCACAATAATGCT
CCTCCTCCTGCTACTGGTAGCAAAAACCAG--CCAATGAAAGTTGCCAAGAGGTGCCTGGAATCGTAATAAATTCGGCGA
ACGACGTTGCGACAGGCCCCCGACCGAGCGCCCGGAAGCGAACAAGCGCGCAGCAA------------------------
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--------------------------------------------------------------------------TCAGGC
GCGAGCACGATGCGGCCCAGGGCCCAGGGCCCAGGGGAATAACAATCAGTGCGCTGACGTGGATCCGATCGGTCATGGGA
CCCCATCCGACGGCCCAGATCCTTTCCCCCCTCTTT-ATC-TTCCCCCTCCTCCCTCCCACCC---TCGCCGTCGCAGAT
CCCCACCCTCGTCTCTTCCTCTCCACAAGCACACTGACGCACTTCCATGGCCGCCGCCTCCTCCTCGTCCCCCCCTCCCA
GCTCCGCTTCCTCGCACCATTTACGGACTTTGCGGGCGTGCGTCTGGTAGGGTGGATCGTGCGAGAGCAGAGG----CGT
ACGTCTTGGTTTGTCGGTTAAGGGAGGAGCTAGGCTGTGGTGTGGGGTGGAGCTAGGTGGGGGAACG------------C
GATGAGGCGAACGACGAGCTTGAGGGAGGTCGCGCCGCCGTCCGTGTTGGCGGTGGTGTTGGAGGACGAGGACGAGGACG
AGCAGGCCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGGCAGGACTGGCTGGCGGCCCTAGGCGGCGGC
AGCGGGGCCCCCGGGACGGACTGGCTCGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTCCGGCGCAACTC
GGCCGACTACTCCAAGGTCGAGACGGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTCCTCGGCCCCGGCCGCG
ACACCTTCATGTACAAGTACGTGAGCTGTCCGCCCCTGCATGCACGTGCAACGTGCATCAATGGCCAAGTAGCACCACTA
GCCAATATACT------------AATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGCGAGGCGGCCTT
CTGCAGCCTGGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGCCAAGGTCCATGAGCGAGG
CGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCTAACCTGACGGC
GCACGAGAGGCAGGCACGCTATCATCTTCCGAAGCTACCTGCC--GGCCAGTAGCTCTGGAAGCTCTCGCTTCTCACCGC
CCGCTACGCATGTATTACTCTCGTACGTAGTACGTACGAACGCCTCCAATATGAATCGCTGGTAATC----TGTGCAGGC
CGTCAGCCACCGCTGGTCGATCGATCGACCATCGCCTCAGTACAACTGCATAGCTTTTTATCA----ATTGTATGTACAC
TTGGAGCTCGAATCCGTTTATGAGATCGTTCCTTCCTACGGTC---CTCCACTACTGATCGATTAGTTAATTGCATCACC
TCA------CGGATCTTATCTTGTTTGGCTTTGTGCATCCTCGACGGTTCATATTGCAGCACTGCGTA---GACCGAATC
CGTTAACGAAATTGCACTTTAATGAAGAGAGAAAAACAACCTTATCTTGCCTAGTGTAATCAAGTCTTGGTGATGTGTGC
AGTCAAAAGGG--ATGTGATCACTGTTGTTACGTGCTCGTGAGGCCGCCGCCAGGCTGAAAGTTAAGAGTCATTGAACCA
GTCGCGTGGTTACTAATCAATCCC--------------------------------------------------------
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-------------------------------------------GTGAGCAGCGCTGCGGCAGCGTATTAAAGCTTGTTGG
CTC-------TCATGATACGGATATGG-CTGTGGGCTTTACTACTTGAGCACTTGCTCACTAATTGCAACAATAAGACAA
AATTCAGACGACTCTAGTACGCAACTATTCCAATGTGCAAGTGCAAGTATATA---ATACTCTCTCCTCCAAGTTCACAG
TTAAACCCTTTAA--TTTGATCAAGTGTATATTATTAAAGAGTAAGATTACAACACCAAATCGATGCCACTACATACTAC
TCTCTCCGTCCCATAATATAAAGTGTTATTACGGGAAGTATTTTGTAATATATTAAATATATAATAGATGTTTGACCTTT
TTTCTATGAACTTTTTTTTCAGAAACTTTCAATCTATTCATTTTCAATCATAGCAGTGCAAAGAACAAAATAGGTAATAA
AATTACA
>chr5D_335
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--------------ATTACAAAGTAAATAAATTATATATGAGGTCTACAGTTGCTACGTAACCCAACCACAAACTGAGCT
TTCATCTCATGCATCGAGCTGCTGAATCACACGTCCTCTCTTTCTATCCTTCACAAAAACTTCTTGGTCACAATAATGCT
CCTCCTCCTACTACTACTAGCAAAAAAAAA--CCAATGAAAGTTGCCAAGAGGCGCCTGGAATCGTAATAAATTCGGCGA
ACGACGTTGCGACAGGCCCCCGACCGAGCGCCCGGAAGAGAACAAGCGCGCAGCAA------------------------
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--------------------------------------------------------------------------TCAGGC
GCGAGCACGAGGC-------GGCCCAGGGCCCAGGGGAATAACAATCAGTGCGCTGACGTGGATCCGATTGGTCATGGGA
CCCCATCCGACGGCCCAGACCCTTTTCCTCTTCTTTTATCTTCCCCCCTCCTCCCTCCCA-CCCTCTCGCAGTCGCAGAT
TCCCACCCTCGTCTCATCCTCTCCACACGCGCACATACGCACTTCCATGGCCGCCGCCTCC---------CCTCCTCCCA
GCTCCGCCTCCTCGCGCCTTTTACGGACTTTGCGAGCGTACGTGTGCTAGGGTGGATCGCGCAAGAGCAGAGG----CGT
ACGTCTTGGTTTGTCG-TTAAGGGAGGAGCTAGGCCGTGGTGTGGGGTGGAGCTAGCTGGGGGAT----------AACCC
GATGAGGCGAACGACGAGCTTGACGGAGGTCGCGCCGCCGTCGGTGCTGGCGGTGGTGTTGGAGGAAGAGGACGAGGACG
AGCAGGTCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGGCAGGACTGGCTGGCGGCCCTAGGCGGCGGC
AGCGGTGCCCCCGGGACGGACTGGCTAGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTCCGGCGGAACTC
GGCCGACTACTCCAAGGTCGAGACCGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTCCTCGGCCCCGGCCGCG
ACACCTTCATGTACAAGTACGTGAGCTGTCCACTCCTGCATGCACGTGCA-------TCCATGGCCAAGTCGTACCA---
---------CT------------AATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGCGAGGCGGCGTT
CTGCAGCCTGGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGTCAAGGTCCATGAGCGAGG
CGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCTGACCTGACAGC
GCACGAGAGGCAGGCAGGCTATCATCTTCCGAAGCTACCTGCC--GGCCAGTAGCTCTGGAAGCTCTCGCTTCTCACCGC
CCGCTACGCATGTATTACTCTCGTAC---GTACGTACGAACGCCTCCAATATGAATCGCTGGTAATCGATCTGTGGAGGC
CGTCAGCCACCGCTGGTCGATCGATCGACCATCGCCTCAGTACAACTGCATAGCTTTTTTATTAATTATTGTATGTACAC
TTGGAGCTCGAATCCGTTTCTGAGATCGTTCCTTCCTACGGTACTACTCCACCACTGATCGATTAGTTAATTGCATCACC
TCATCCTCACGGATCTTATCTTGTTTGGCTTTGTGCATCCTGGACGCTTGAGATTGCAGTACTGCGTA---GACCGAATA
CGTTAACAAAATTGCACTTTAATGAAGAGAGAAAAACAATCTTATCTTGCCTAGTGTAATCAAGTCTTGGTGATGTGTGC
AGTCAAAAAT-ATATGTGATCACTGTTGTTACGTGCTCGTGAGGCCGCCGCCAGGCTGAAAGTTAAGAATCATTGAACCA
GTCGCGTGGTAACTAATCAAT-CCCGTGAGTAAATCTGAGAATGGTTTTTGATTAACCGGGGCCAACGGTTTGGTTTTTT
ACCTTGGGCTTGATTTGTTTGGGTTGTGATGGGCCCAGACTGTTATCAGTTTAGTTTGGTTTGGTTTTGCGTAAAAATAA
GTTGGGTATGGTTGGGTTTGGGCCTAAATGGTTTCGGCGTTGACAGTTGTGAATCGTGGTTCAGAACCGGTTCTTAAACT
AGACGTACCCACACGACACGCCGCGGCTGGACAGACACGTACATACGCTACGCGACGCGGTTCGGCGGGACACACATGTA
TTTAGCTGCTACTGTACATCAATTACGTTGCTAGCTAGCTTGCTTGCCGGTTAGCTTGCACATACAGCAGATTGAATTGG
TTTCAACCCAAAACTAAGAACCAGGTTAAGCCCATATATCCAAGAGTGGTTTGGTTTTGGTAGAGGTGGACAGAGTGCAC
AGTTTGGTTTGGTTTTGGTTGTGCGCGGTGATTGGAGGTTTGGTTTAGTTTTGATTTAAACTCCACATTGATTGGTTATG
GTTTAGGTTTAGTTCAGTTATATGACCATTGCCAGGTTTACCCGTGAGCAGCGCTGCAGCAGTGTATTAAAGCTTGTTGG
CTC-------TCATGATACGGATATGGGCTGTGTGTTTTACTATTA-ACCACTTGCTCACTAATTGCAACAATAAGACAA
AATTCAGACGAATCTA----GCAACTATTCCAATGTGCAAGTGCAAGTATATATA----CTCTCTTCTGCAAGTTTACAG
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>chr5B_335
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--------------ATTACAAAGTAAATGAATAATATATGAGGTCTACAGTTGCTACGTAACCCAACCACAAACTCAGCT
TTCATCTCATGCATCGAGCTGCTGAATCACACGTCCTCTTTTTCTATCCTTCACAAAAACTTCTTGGTCACAATCATGCT
CCTCCTCCTACTACTACTAGCAAAAAAAAAAACCGATGAAAGTTGCCAAGAGGCGCCTGGAATCGTAATAAATTCGGCGA
ACGACGTTGCGACAGG-CCCCGACCGAGCGCCCGGAAGAGAACAAGCGCGCAGCAAAAATGATAGACATACAAAGACTTA
CACGCTTTTACACGCTTTTTTCATCTAACAACCAATCATAAATCTCTCCCCCCCCTGATTTTCAGAGGGTGGGTCATCCC
GCTCACCTATTGACCAATCAAAGTTAACCATCATGTAAAAGTCTGTAAATCGTTTGTACGTGTAGCATTGCCGATCAGGC
GCGAGCACGAGGC-------GGCCCAGGGCCCAGGGGAATAACAATCAGTGCGCTGACGTGGATCCGATCGGTCATGGGA
CCCCATCCGACGGCCCAGATCCTTTTCCTCCTCTTTTATC-TCCCCCCTCCTCCCTCCCAACCCTCTCGCAGTCGCAGAT
TCCCACCCTCGTCTCCTCCTCTCCACACACGCACGGACGCACTTCCATGGCCGCCGCCTCCTCGTCGTCCCCCCCTCCCA
GCCCCGCTTCATCGTGCCTTTTACGGAGTTTGCGAGCGTGCATGTGCTAGGGTGGATCGTGCAAGAGCGGAGGCGTACGT
ACGTCTTGGTTTGTTGGTGAAGGGAGGAGCTAGGCTGTGGTGCGGGGTGGAGCTAGCTGGGGGATAGCCTGCAAGAAGCC
GATGAGGCGAACGACTAGCTTGACGGAGGTCGCGCCGCCGTCGGTGCTGGCGGTGGTGTTGGAGGACGAGGACGAGGACG
AGCTGGTCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGCCAGGACTGGCTGGCGGCCCTAGGCGGCGGC
AGCGATGCCCCCGGGACGGACTGGCTAGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTCCGGCGCAACTC
GGCCGACTACTCCAAGGTCGAGACCGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTTCTCGGCCCCGGTCGCG
ACACCTTCATGTACAAGTACGTGAGCTGTCCGCTCCTGCATGCACGTGCA-------TCCATGGCGAAGTTGTACCG---
---------CTAGCCAATATACCAATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGCGAGGCGGCGTT
CTGCAGCCTGGAGTGCCGGCAGCAGCACATAACCCACGAGGAGTGGAAGGACAAGCGCACGTCAAGGTCCATGAGCGAGG
CGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCTGACCTGACAGC
GCACGAGAGGCAGGCACGCTATCATCTTCCGAAGCTACCTGCCAAGGCCAGTAGCTCTCAG-------------------
-CGCTACGCATGTATTACTC---------GTACGTACGTACGCCTCGACTATGAATCGCTGGTAATCGATCTGTGCAGGC
CGTCAACCACCGCTGGTCGATCGATCGACCATCGCCTCAGTACAACTGCATAGCTTTTTATCA----ATTGTATGTACAC
TCGGAGCTCGAATCCGTTTCTGAGATCGTTCCTTCCTACGGTACTACTACACTACTGATCGATTAGTTAATTGCATCACC
TCA------CGGATCTTATCTTGTTTGGCTTTGTGCATCCTCGACGCTTCATATTGCAGTACTGCGTACTAGACCTAATG
CGTTAACAAAATTGCATTTTAATGAACAGAGAAAAACAATCTTATCTTGCCTAGTGTAATCAAGTCTTGGTGATGTGTGC
AGTCAAAAAAAATATGTGACCACTGTTGTTACGTGCTCGTGAGGCCGCCGCCAGGCTGAAAGTTAAGAGTCATTGAACCA
GTCGCGTGGTAACTAATCAAT-CC--------------------------------------------------------
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-------------------------------------------GTGAGCAGCGCTGCGGCAGTGTATTAAAGCTTGTTGG
CTCTCATGAGTCATGATACGGATATGG-CTGTGGGCTTTACTACTA-AGCACTTGCTCACTAATTGCAACGATAAGACAA
AATTCAGACGACTCTA----GCAACTATTCCAATGTGCAAGTGCAAGTATATATATATACTCTCTCCTGCAAGTTTACAG
TTAAACCCTTTAAAATTTGATCAAGTTTATATTATAAAAGAA-AAGATTACAACACCAAATCGATGTCACTACATACTCC
CTCCGTCC------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------------S--------S---------------------------------------
--------------------------------------S------------------------SSS--------------
---------S-----SS---------SS-S-----------------------S--------------------------
--------------------------------------S-----------------------------------------
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----------S--SSSSSSS------------------------------------------------------------
-------------------------S--S-------------S-----------------S---------S---------
S--------------S-----------S--S---S----------------------------S----------------
---------------S--S---------------S--------S--S---------------S-----------------
--------------------------------------------------------S-------SS--------------
-----------------------S------------------S---S---------------------------------
------S-------------------------------------------------------------------------
-----S--------------------S-----------------------------------------------------
------------------------S-------------------------------------------------------
---------------------------------S----------------SSSSSSS--S----------S-S----SSS
SSSSSSSSS--------------------------------------------------------------------S--
-------------------------------------------------------------S------------------
---------------------------------------------------------------------S-------S--
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--------------------------SSS---------------------------------------------------
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-------------------S----------------------S-------------------------------------
----------------------------------------------S------------S-------------------S
-------S-------------------------------S----------------------------------------
--------SSS---------------------------------------------------------------------
----------S----------S----------------------------------------------------------
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--------------------------------------------------------------S-----------------
---------------------------------------------SS---------------------------------
----------------SSSS------------------------------------------------S------S----
--------------------------S--------S-----SS-----------------------S-----------S-
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_439
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-------------------TGCTGAATCACACGTCCTCC-----------------------------------------
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>reverse_1580
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-----------------------------------------------------------AATGGCCAAGTAGCACCACT-
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>forward_496
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----------------------------------------------------------------------------TGCT
CCTCCTCCTGCTACTG----------------------------------------------------------------
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>reverse_2220
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-----------------------------------------------------------CACTGCGTAGACCGAATCCG-
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