Multiple sequence alignment - TraesCS5A01G186600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G186600 chr5A 100.000 3453 0 0 831 4283 387930088 387926636 0.000000e+00 6377.0
1 TraesCS5A01G186600 chr5A 100.000 290 0 0 1 290 387930918 387930629 1.750000e-148 536.0
2 TraesCS5A01G186600 chr5D 97.295 3105 76 5 1179 4282 294639949 294636852 0.000000e+00 5262.0
3 TraesCS5A01G186600 chr5B 94.320 3116 129 10 1177 4282 336246905 336243828 0.000000e+00 4730.0
4 TraesCS5A01G186600 chr5B 88.024 334 37 3 833 1164 683503972 683503640 4.010000e-105 392.0
5 TraesCS5A01G186600 chr5B 88.693 283 24 7 7 284 422062599 422062320 5.310000e-89 339.0
6 TraesCS5A01G186600 chr5B 89.655 232 19 4 22 249 495773724 495773954 1.510000e-74 291.0
7 TraesCS5A01G186600 chr5B 100.000 36 0 0 1131 1166 455756370 455756335 2.760000e-07 67.6
8 TraesCS5A01G186600 chr7D 84.830 323 47 2 844 1164 590080642 590080320 1.490000e-84 324.0
9 TraesCS5A01G186600 chr7D 88.710 248 22 5 5 249 159902847 159902603 9.000000e-77 298.0
10 TraesCS5A01G186600 chr7D 79.358 218 42 3 953 1168 395075140 395074924 2.670000e-32 150.0
11 TraesCS5A01G186600 chr7D 93.407 91 6 0 3373 3463 165657945 165657855 7.470000e-28 135.0
12 TraesCS5A01G186600 chr7D 91.209 91 3 3 3372 3457 465336036 465336126 7.520000e-23 119.0
13 TraesCS5A01G186600 chr4B 88.571 245 22 4 7 245 661208482 661208726 4.190000e-75 292.0
14 TraesCS5A01G186600 chr1A 95.294 85 4 0 3373 3457 27361943 27362027 7.470000e-28 135.0
15 TraesCS5A01G186600 chr1A 89.247 93 10 0 3373 3465 27362027 27361935 2.710000e-22 117.0
16 TraesCS5A01G186600 chr6B 94.118 85 5 0 3373 3457 139885216 139885300 3.480000e-26 130.0
17 TraesCS5A01G186600 chr6B 97.222 36 1 0 1129 1164 473637408 473637373 1.290000e-05 62.1
18 TraesCS5A01G186600 chr2D 93.976 83 4 1 3371 3452 579535341 579535259 1.620000e-24 124.0
19 TraesCS5A01G186600 chr1D 88.421 95 9 2 3371 3463 404066662 404066756 3.500000e-21 113.0
20 TraesCS5A01G186600 chr4A 84.416 77 12 0 1090 1166 331129606 331129682 4.590000e-10 76.8
21 TraesCS5A01G186600 chr2B 87.097 62 8 0 1105 1166 589878492 589878553 2.140000e-08 71.3
22 TraesCS5A01G186600 chr7A 86.667 60 8 0 1105 1164 183674627 183674686 2.760000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G186600 chr5A 387926636 387930918 4282 True 3456.5 6377 100.000 1 4283 2 chr5A.!!$R1 4282
1 TraesCS5A01G186600 chr5D 294636852 294639949 3097 True 5262.0 5262 97.295 1179 4282 1 chr5D.!!$R1 3103
2 TraesCS5A01G186600 chr5B 336243828 336246905 3077 True 4730.0 4730 94.320 1177 4282 1 chr5B.!!$R1 3105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.100682 TCCTTGCATAGCTCGTCGAC 59.899 55.0 5.18 5.18 0.00 4.20 F
1048 1049 0.099791 AAGGTCGTTTGGTGCGTTTG 59.900 50.0 0.00 0.00 0.00 2.93 F
1166 1167 0.037590 TGCGGTGAAGTTGGCCTTAT 59.962 50.0 3.32 0.00 32.03 1.73 F
1457 1458 0.739462 TCATGGTTGTCGATGCGTCC 60.739 55.0 0.00 0.00 31.39 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1147 1148 0.037590 ATAAGGCCAACTTCACCGCA 59.962 50.000 5.01 0.0 40.64 5.69 R
2198 2199 0.106268 AAAGTGTGCCATCACCACCA 60.106 50.000 0.00 0.0 42.46 4.17 R
2967 2970 1.394917 GTTGATCCAGTAGCTGTTGCG 59.605 52.381 0.00 0.0 45.42 4.85 R
3337 3340 2.856222 AGAACTCCACTTGCCTCAAAG 58.144 47.619 0.00 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.733960 TCGGACACGAGCTGGACG 61.734 66.667 1.44 0.00 45.59 4.79
27 28 4.039357 CGGACACGAGCTGGACGT 62.039 66.667 1.44 0.00 44.60 4.34
28 29 2.338984 GGACACGAGCTGGACGTT 59.661 61.111 1.44 0.00 42.07 3.99
29 30 1.300697 GGACACGAGCTGGACGTTT 60.301 57.895 1.44 0.00 42.07 3.60
30 31 0.878961 GGACACGAGCTGGACGTTTT 60.879 55.000 1.44 0.00 42.07 2.43
31 32 0.935196 GACACGAGCTGGACGTTTTT 59.065 50.000 1.44 0.00 42.07 1.94
45 46 4.251246 TTTTTGCGTCCCTGCTGT 57.749 50.000 0.00 0.00 35.36 4.40
46 47 2.029743 TTTTTGCGTCCCTGCTGTC 58.970 52.632 0.00 0.00 35.36 3.51
47 48 1.452145 TTTTTGCGTCCCTGCTGTCC 61.452 55.000 0.00 0.00 35.36 4.02
48 49 4.680237 TTGCGTCCCTGCTGTCCG 62.680 66.667 0.00 0.00 35.36 4.79
52 53 4.008933 GTCCCTGCTGTCCGCTGT 62.009 66.667 0.00 0.00 40.11 4.40
53 54 4.007644 TCCCTGCTGTCCGCTGTG 62.008 66.667 0.00 0.00 40.11 3.66
54 55 4.320456 CCCTGCTGTCCGCTGTGT 62.320 66.667 0.00 0.00 40.11 3.72
55 56 2.281070 CCTGCTGTCCGCTGTGTT 60.281 61.111 0.00 0.00 40.11 3.32
56 57 2.320587 CCTGCTGTCCGCTGTGTTC 61.321 63.158 0.00 0.00 40.11 3.18
57 58 2.661537 TGCTGTCCGCTGTGTTCG 60.662 61.111 0.00 0.00 40.11 3.95
58 59 2.661866 GCTGTCCGCTGTGTTCGT 60.662 61.111 0.00 0.00 35.14 3.85
59 60 2.658707 GCTGTCCGCTGTGTTCGTC 61.659 63.158 0.00 0.00 35.14 4.20
60 61 1.007271 CTGTCCGCTGTGTTCGTCT 60.007 57.895 0.00 0.00 0.00 4.18
61 62 1.278172 CTGTCCGCTGTGTTCGTCTG 61.278 60.000 0.00 0.00 0.00 3.51
62 63 2.355837 TCCGCTGTGTTCGTCTGC 60.356 61.111 0.00 0.00 0.00 4.26
63 64 2.661537 CCGCTGTGTTCGTCTGCA 60.662 61.111 0.00 0.00 0.00 4.41
64 65 2.546321 CGCTGTGTTCGTCTGCAC 59.454 61.111 0.00 0.00 36.26 4.57
65 66 2.237066 CGCTGTGTTCGTCTGCACA 61.237 57.895 0.00 0.00 42.50 4.57
66 67 1.560004 CGCTGTGTTCGTCTGCACAT 61.560 55.000 0.00 0.00 43.52 3.21
67 68 0.110509 GCTGTGTTCGTCTGCACATG 60.111 55.000 0.00 0.00 43.52 3.21
68 69 0.514255 CTGTGTTCGTCTGCACATGG 59.486 55.000 0.00 0.00 43.52 3.66
69 70 0.884259 TGTGTTCGTCTGCACATGGG 60.884 55.000 0.00 0.00 40.24 4.00
70 71 0.884704 GTGTTCGTCTGCACATGGGT 60.885 55.000 0.00 0.00 35.81 4.51
71 72 0.602638 TGTTCGTCTGCACATGGGTC 60.603 55.000 0.00 0.00 0.00 4.46
72 73 0.320771 GTTCGTCTGCACATGGGTCT 60.321 55.000 0.00 0.00 0.00 3.85
73 74 0.320683 TTCGTCTGCACATGGGTCTG 60.321 55.000 0.00 0.00 0.00 3.51
74 75 2.393768 CGTCTGCACATGGGTCTGC 61.394 63.158 0.00 0.00 0.00 4.26
75 76 2.042831 GTCTGCACATGGGTCTGCC 61.043 63.158 0.00 0.00 31.97 4.85
93 94 3.362040 CCCCCTGTCATTGAAAGCA 57.638 52.632 0.00 0.00 0.00 3.91
94 95 1.180029 CCCCCTGTCATTGAAAGCAG 58.820 55.000 0.00 0.00 0.00 4.24
95 96 1.272092 CCCCCTGTCATTGAAAGCAGA 60.272 52.381 0.00 0.00 0.00 4.26
96 97 2.089980 CCCCTGTCATTGAAAGCAGAG 58.910 52.381 0.00 0.00 0.00 3.35
97 98 2.089980 CCCTGTCATTGAAAGCAGAGG 58.910 52.381 0.00 0.00 0.00 3.69
98 99 2.089980 CCTGTCATTGAAAGCAGAGGG 58.910 52.381 0.00 0.00 0.00 4.30
99 100 2.290514 CCTGTCATTGAAAGCAGAGGGA 60.291 50.000 0.00 0.00 0.00 4.20
100 101 2.746362 CTGTCATTGAAAGCAGAGGGAC 59.254 50.000 0.00 0.00 0.00 4.46
101 102 2.087646 GTCATTGAAAGCAGAGGGACC 58.912 52.381 0.00 0.00 0.00 4.46
102 103 1.004745 TCATTGAAAGCAGAGGGACCC 59.995 52.381 0.59 0.59 0.00 4.46
103 104 1.075601 ATTGAAAGCAGAGGGACCCA 58.924 50.000 14.60 0.00 0.00 4.51
104 105 0.110486 TTGAAAGCAGAGGGACCCAC 59.890 55.000 14.60 6.57 0.00 4.61
105 106 1.002011 GAAAGCAGAGGGACCCACC 60.002 63.158 14.60 3.84 38.08 4.61
114 115 4.295199 GGACCCACCCAACCACCC 62.295 72.222 0.00 0.00 0.00 4.61
115 116 3.503839 GACCCACCCAACCACCCA 61.504 66.667 0.00 0.00 0.00 4.51
116 117 3.802852 GACCCACCCAACCACCCAC 62.803 68.421 0.00 0.00 0.00 4.61
117 118 4.614036 CCCACCCAACCACCCACC 62.614 72.222 0.00 0.00 0.00 4.61
118 119 4.614036 CCACCCAACCACCCACCC 62.614 72.222 0.00 0.00 0.00 4.61
119 120 3.826822 CACCCAACCACCCACCCA 61.827 66.667 0.00 0.00 0.00 4.51
120 121 2.785389 ACCCAACCACCCACCCAT 60.785 61.111 0.00 0.00 0.00 4.00
121 122 2.037208 CCCAACCACCCACCCATC 59.963 66.667 0.00 0.00 0.00 3.51
122 123 2.037208 CCAACCACCCACCCATCC 59.963 66.667 0.00 0.00 0.00 3.51
123 124 2.037208 CAACCACCCACCCATCCC 59.963 66.667 0.00 0.00 0.00 3.85
124 125 3.272847 AACCACCCACCCATCCCC 61.273 66.667 0.00 0.00 0.00 4.81
125 126 3.848200 AACCACCCACCCATCCCCT 62.848 63.158 0.00 0.00 0.00 4.79
126 127 3.420482 CCACCCACCCATCCCCTC 61.420 72.222 0.00 0.00 0.00 4.30
127 128 2.286425 CACCCACCCATCCCCTCT 60.286 66.667 0.00 0.00 0.00 3.69
128 129 2.042930 ACCCACCCATCCCCTCTC 59.957 66.667 0.00 0.00 0.00 3.20
129 130 2.374342 CCCACCCATCCCCTCTCT 59.626 66.667 0.00 0.00 0.00 3.10
130 131 1.768077 CCCACCCATCCCCTCTCTC 60.768 68.421 0.00 0.00 0.00 3.20
131 132 1.316266 CCACCCATCCCCTCTCTCT 59.684 63.158 0.00 0.00 0.00 3.10
132 133 0.762461 CCACCCATCCCCTCTCTCTC 60.762 65.000 0.00 0.00 0.00 3.20
133 134 0.264359 CACCCATCCCCTCTCTCTCT 59.736 60.000 0.00 0.00 0.00 3.10
134 135 0.560688 ACCCATCCCCTCTCTCTCTC 59.439 60.000 0.00 0.00 0.00 3.20
135 136 0.178935 CCCATCCCCTCTCTCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
136 137 0.859760 CCATCCCCTCTCTCTCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
137 138 1.220236 CCATCCCCTCTCTCTCTCCTT 59.780 57.143 0.00 0.00 0.00 3.36
138 139 2.597455 CATCCCCTCTCTCTCTCCTTC 58.403 57.143 0.00 0.00 0.00 3.46
139 140 1.687492 TCCCCTCTCTCTCTCCTTCA 58.313 55.000 0.00 0.00 0.00 3.02
140 141 2.222271 TCCCCTCTCTCTCTCCTTCAT 58.778 52.381 0.00 0.00 0.00 2.57
141 142 2.589664 TCCCCTCTCTCTCTCCTTCATT 59.410 50.000 0.00 0.00 0.00 2.57
142 143 3.013417 TCCCCTCTCTCTCTCCTTCATTT 59.987 47.826 0.00 0.00 0.00 2.32
143 144 3.134442 CCCCTCTCTCTCTCCTTCATTTG 59.866 52.174 0.00 0.00 0.00 2.32
144 145 3.432046 CCCTCTCTCTCTCCTTCATTTGC 60.432 52.174 0.00 0.00 0.00 3.68
145 146 3.197333 CCTCTCTCTCTCCTTCATTTGCA 59.803 47.826 0.00 0.00 0.00 4.08
146 147 4.183101 CTCTCTCTCTCCTTCATTTGCAC 58.817 47.826 0.00 0.00 0.00 4.57
147 148 3.837146 TCTCTCTCTCCTTCATTTGCACT 59.163 43.478 0.00 0.00 0.00 4.40
148 149 3.933955 CTCTCTCTCCTTCATTTGCACTG 59.066 47.826 0.00 0.00 0.00 3.66
149 150 3.326006 TCTCTCTCCTTCATTTGCACTGT 59.674 43.478 0.00 0.00 0.00 3.55
150 151 4.070716 CTCTCTCCTTCATTTGCACTGTT 58.929 43.478 0.00 0.00 0.00 3.16
151 152 4.067896 TCTCTCCTTCATTTGCACTGTTC 58.932 43.478 0.00 0.00 0.00 3.18
152 153 3.149196 TCTCCTTCATTTGCACTGTTCC 58.851 45.455 0.00 0.00 0.00 3.62
153 154 3.152341 CTCCTTCATTTGCACTGTTCCT 58.848 45.455 0.00 0.00 0.00 3.36
154 155 3.565307 TCCTTCATTTGCACTGTTCCTT 58.435 40.909 0.00 0.00 0.00 3.36
155 156 3.318839 TCCTTCATTTGCACTGTTCCTTG 59.681 43.478 0.00 0.00 0.00 3.61
156 157 2.798976 TCATTTGCACTGTTCCTTGC 57.201 45.000 0.00 0.00 39.33 4.01
157 158 2.030371 TCATTTGCACTGTTCCTTGCA 58.970 42.857 0.00 0.00 46.93 4.08
161 162 1.167851 TGCACTGTTCCTTGCATAGC 58.832 50.000 0.00 0.00 43.79 2.97
162 163 1.271543 TGCACTGTTCCTTGCATAGCT 60.272 47.619 0.00 0.00 43.79 3.32
163 164 1.399791 GCACTGTTCCTTGCATAGCTC 59.600 52.381 0.00 0.00 38.68 4.09
164 165 1.662629 CACTGTTCCTTGCATAGCTCG 59.337 52.381 0.00 0.00 0.00 5.03
165 166 1.276421 ACTGTTCCTTGCATAGCTCGT 59.724 47.619 0.00 0.00 0.00 4.18
166 167 1.929836 CTGTTCCTTGCATAGCTCGTC 59.070 52.381 0.00 0.00 0.00 4.20
167 168 0.924090 GTTCCTTGCATAGCTCGTCG 59.076 55.000 0.00 0.00 0.00 5.12
168 169 0.815095 TTCCTTGCATAGCTCGTCGA 59.185 50.000 0.00 0.00 0.00 4.20
169 170 0.100682 TCCTTGCATAGCTCGTCGAC 59.899 55.000 5.18 5.18 0.00 4.20
170 171 1.202973 CCTTGCATAGCTCGTCGACG 61.203 60.000 31.30 31.30 41.45 5.12
171 172 1.802300 CTTGCATAGCTCGTCGACGC 61.802 60.000 32.19 19.55 39.60 5.19
172 173 3.025176 GCATAGCTCGTCGACGCC 61.025 66.667 32.19 23.75 39.60 5.68
173 174 2.722548 CATAGCTCGTCGACGCCG 60.723 66.667 32.19 24.50 39.60 6.46
174 175 4.609247 ATAGCTCGTCGACGCCGC 62.609 66.667 32.19 31.56 39.60 6.53
191 192 4.335647 CCGGAGCAGGGCACAAGT 62.336 66.667 0.00 0.00 0.00 3.16
192 193 2.662596 CGGAGCAGGGCACAAGTA 59.337 61.111 0.00 0.00 0.00 2.24
193 194 1.741770 CGGAGCAGGGCACAAGTAC 60.742 63.158 0.00 0.00 0.00 2.73
194 195 1.741770 GGAGCAGGGCACAAGTACG 60.742 63.158 0.00 0.00 0.00 3.67
195 196 2.358737 AGCAGGGCACAAGTACGC 60.359 61.111 0.00 0.00 0.00 4.42
196 197 2.668212 GCAGGGCACAAGTACGCA 60.668 61.111 0.00 0.00 0.00 5.24
197 198 2.040544 GCAGGGCACAAGTACGCAT 61.041 57.895 0.00 0.00 0.00 4.73
198 199 1.796151 CAGGGCACAAGTACGCATG 59.204 57.895 0.00 0.00 0.00 4.06
199 200 2.040544 AGGGCACAAGTACGCATGC 61.041 57.895 7.91 7.91 37.35 4.06
201 202 3.262936 GCACAAGTACGCATGCCA 58.737 55.556 13.15 0.00 31.71 4.92
202 203 1.135315 GCACAAGTACGCATGCCAG 59.865 57.895 13.15 0.85 31.71 4.85
203 204 1.135315 CACAAGTACGCATGCCAGC 59.865 57.895 13.15 1.79 0.00 4.85
204 205 2.040544 ACAAGTACGCATGCCAGCC 61.041 57.895 13.15 0.00 0.00 4.85
205 206 2.039974 CAAGTACGCATGCCAGCCA 61.040 57.895 13.15 0.00 0.00 4.75
206 207 2.040544 AAGTACGCATGCCAGCCAC 61.041 57.895 13.15 2.98 0.00 5.01
207 208 2.436646 GTACGCATGCCAGCCACT 60.437 61.111 13.15 0.00 0.00 4.00
208 209 2.436469 TACGCATGCCAGCCACTG 60.436 61.111 13.15 0.00 0.00 3.66
895 896 4.314440 GACACAGGCAGGGTGCGA 62.314 66.667 0.00 0.00 46.21 5.10
896 897 4.320456 ACACAGGCAGGGTGCGAG 62.320 66.667 4.23 0.00 46.21 5.03
928 929 4.504916 CGAGCGGGCAGGAGTGAG 62.505 72.222 0.00 0.00 0.00 3.51
929 930 4.828925 GAGCGGGCAGGAGTGAGC 62.829 72.222 0.00 0.00 0.00 4.26
951 952 4.443266 GCGAGGGCAGACGAGCTT 62.443 66.667 0.00 0.00 39.62 3.74
952 953 2.507992 CGAGGGCAGACGAGCTTG 60.508 66.667 0.00 0.00 34.17 4.01
953 954 2.125350 GAGGGCAGACGAGCTTGG 60.125 66.667 5.79 0.00 34.17 3.61
954 955 4.400961 AGGGCAGACGAGCTTGGC 62.401 66.667 5.79 1.04 34.17 4.52
955 956 4.704833 GGGCAGACGAGCTTGGCA 62.705 66.667 10.19 0.00 34.17 4.92
956 957 2.437359 GGCAGACGAGCTTGGCAT 60.437 61.111 10.19 0.00 34.17 4.40
957 958 2.467826 GGCAGACGAGCTTGGCATC 61.468 63.158 10.19 0.00 34.17 3.91
958 959 2.806856 GCAGACGAGCTTGGCATCG 61.807 63.158 10.19 7.39 44.36 3.84
959 960 2.169789 CAGACGAGCTTGGCATCGG 61.170 63.158 10.19 0.00 43.12 4.18
960 961 3.567797 GACGAGCTTGGCATCGGC 61.568 66.667 12.95 6.51 43.12 5.54
979 980 4.724602 GCTGCACCGACAGAGCGA 62.725 66.667 0.00 0.00 40.25 4.93
980 981 2.505777 CTGCACCGACAGAGCGAG 60.506 66.667 0.00 0.00 40.25 5.03
981 982 2.982744 CTGCACCGACAGAGCGAGA 61.983 63.158 0.00 0.00 40.25 4.04
982 983 2.202544 GCACCGACAGAGCGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
1003 1004 3.838271 GAGCTCACGGGCGGATGA 61.838 66.667 9.40 0.00 37.29 2.92
1004 1005 3.781770 GAGCTCACGGGCGGATGAG 62.782 68.421 9.40 15.28 44.37 2.90
1005 1006 4.899239 GCTCACGGGCGGATGAGG 62.899 72.222 18.67 7.59 42.25 3.86
1006 1007 4.899239 CTCACGGGCGGATGAGGC 62.899 72.222 13.14 0.00 38.97 4.70
1025 1026 3.381983 TGCGGCTGAGACGGACAT 61.382 61.111 10.80 0.00 32.98 3.06
1026 1027 2.125512 GCGGCTGAGACGGACATT 60.126 61.111 10.80 0.00 32.98 2.71
1027 1028 1.741770 GCGGCTGAGACGGACATTT 60.742 57.895 10.80 0.00 32.98 2.32
1028 1029 1.298859 GCGGCTGAGACGGACATTTT 61.299 55.000 10.80 0.00 32.98 1.82
1029 1030 2.004583 CGGCTGAGACGGACATTTTA 57.995 50.000 0.00 0.00 0.00 1.52
1030 1031 2.343101 CGGCTGAGACGGACATTTTAA 58.657 47.619 0.00 0.00 0.00 1.52
1031 1032 2.348666 CGGCTGAGACGGACATTTTAAG 59.651 50.000 0.00 0.00 0.00 1.85
1032 1033 2.678336 GGCTGAGACGGACATTTTAAGG 59.322 50.000 0.00 0.00 0.00 2.69
1033 1034 3.335579 GCTGAGACGGACATTTTAAGGT 58.664 45.455 0.00 0.00 0.00 3.50
1034 1035 3.371285 GCTGAGACGGACATTTTAAGGTC 59.629 47.826 0.00 0.00 38.87 3.85
1035 1036 3.581755 TGAGACGGACATTTTAAGGTCG 58.418 45.455 1.74 0.91 40.38 4.79
1036 1037 3.006110 TGAGACGGACATTTTAAGGTCGT 59.994 43.478 1.74 3.63 40.38 4.34
1037 1038 3.992427 GAGACGGACATTTTAAGGTCGTT 59.008 43.478 1.74 0.00 40.38 3.85
1038 1039 4.383173 AGACGGACATTTTAAGGTCGTTT 58.617 39.130 1.74 0.00 40.38 3.60
1039 1040 4.212636 AGACGGACATTTTAAGGTCGTTTG 59.787 41.667 1.74 0.00 40.38 2.93
1040 1041 3.251487 ACGGACATTTTAAGGTCGTTTGG 59.749 43.478 1.74 0.00 40.38 3.28
1041 1042 3.251487 CGGACATTTTAAGGTCGTTTGGT 59.749 43.478 1.74 0.00 40.38 3.67
1042 1043 4.542735 GGACATTTTAAGGTCGTTTGGTG 58.457 43.478 1.74 0.00 40.38 4.17
1043 1044 3.972403 ACATTTTAAGGTCGTTTGGTGC 58.028 40.909 0.00 0.00 0.00 5.01
1044 1045 2.759538 TTTTAAGGTCGTTTGGTGCG 57.240 45.000 0.00 0.00 0.00 5.34
1045 1046 1.666054 TTTAAGGTCGTTTGGTGCGT 58.334 45.000 0.00 0.00 0.00 5.24
1046 1047 1.666054 TTAAGGTCGTTTGGTGCGTT 58.334 45.000 0.00 0.00 0.00 4.84
1047 1048 1.666054 TAAGGTCGTTTGGTGCGTTT 58.334 45.000 0.00 0.00 0.00 3.60
1048 1049 0.099791 AAGGTCGTTTGGTGCGTTTG 59.900 50.000 0.00 0.00 0.00 2.93
1049 1050 1.298788 GGTCGTTTGGTGCGTTTGG 60.299 57.895 0.00 0.00 0.00 3.28
1050 1051 1.942223 GTCGTTTGGTGCGTTTGGC 60.942 57.895 0.00 0.00 43.96 4.52
1064 1065 4.472701 TGGCGTCTCCAACCCTAT 57.527 55.556 0.00 0.00 43.21 2.57
1065 1066 2.691663 TGGCGTCTCCAACCCTATT 58.308 52.632 0.00 0.00 43.21 1.73
1066 1067 0.539986 TGGCGTCTCCAACCCTATTC 59.460 55.000 0.00 0.00 43.21 1.75
1067 1068 0.539986 GGCGTCTCCAACCCTATTCA 59.460 55.000 0.00 0.00 34.01 2.57
1068 1069 1.473434 GGCGTCTCCAACCCTATTCAG 60.473 57.143 0.00 0.00 34.01 3.02
1069 1070 1.480954 GCGTCTCCAACCCTATTCAGA 59.519 52.381 0.00 0.00 0.00 3.27
1070 1071 2.738964 GCGTCTCCAACCCTATTCAGAC 60.739 54.545 0.00 0.00 0.00 3.51
1071 1072 2.496070 CGTCTCCAACCCTATTCAGACA 59.504 50.000 0.00 0.00 31.52 3.41
1072 1073 3.133003 CGTCTCCAACCCTATTCAGACAT 59.867 47.826 0.00 0.00 31.52 3.06
1073 1074 4.446371 GTCTCCAACCCTATTCAGACATG 58.554 47.826 0.00 0.00 32.22 3.21
1074 1075 4.080863 GTCTCCAACCCTATTCAGACATGT 60.081 45.833 0.00 0.00 32.22 3.21
1075 1076 5.128827 GTCTCCAACCCTATTCAGACATGTA 59.871 44.000 0.00 0.00 32.22 2.29
1076 1077 5.905331 TCTCCAACCCTATTCAGACATGTAT 59.095 40.000 0.00 0.00 0.00 2.29
1077 1078 5.928976 TCCAACCCTATTCAGACATGTATG 58.071 41.667 14.37 14.37 0.00 2.39
1078 1079 5.428457 TCCAACCCTATTCAGACATGTATGT 59.572 40.000 19.34 4.69 45.16 2.29
1079 1080 6.069673 TCCAACCCTATTCAGACATGTATGTT 60.070 38.462 19.34 11.21 41.95 2.71
1080 1081 6.260936 CCAACCCTATTCAGACATGTATGTTC 59.739 42.308 19.34 0.00 41.95 3.18
1081 1082 5.601662 ACCCTATTCAGACATGTATGTTCG 58.398 41.667 19.34 7.41 41.95 3.95
1082 1083 5.128827 ACCCTATTCAGACATGTATGTTCGT 59.871 40.000 19.34 7.44 41.95 3.85
1083 1084 6.049149 CCCTATTCAGACATGTATGTTCGTT 58.951 40.000 19.34 4.89 41.95 3.85
1084 1085 6.538742 CCCTATTCAGACATGTATGTTCGTTT 59.461 38.462 19.34 3.35 41.95 3.60
1085 1086 7.065803 CCCTATTCAGACATGTATGTTCGTTTT 59.934 37.037 19.34 2.14 41.95 2.43
1086 1087 7.904977 CCTATTCAGACATGTATGTTCGTTTTG 59.095 37.037 19.34 4.36 41.95 2.44
1087 1088 5.029650 TCAGACATGTATGTTCGTTTTGC 57.970 39.130 19.34 0.00 41.95 3.68
1088 1089 4.083537 TCAGACATGTATGTTCGTTTTGCC 60.084 41.667 19.34 0.00 41.95 4.52
1089 1090 3.818210 AGACATGTATGTTCGTTTTGCCA 59.182 39.130 0.00 0.00 41.95 4.92
1090 1091 4.458989 AGACATGTATGTTCGTTTTGCCAT 59.541 37.500 0.00 0.00 41.95 4.40
1091 1092 4.732784 ACATGTATGTTCGTTTTGCCATC 58.267 39.130 0.00 0.00 37.90 3.51
1092 1093 3.840890 TGTATGTTCGTTTTGCCATCC 57.159 42.857 0.00 0.00 0.00 3.51
1093 1094 3.149981 TGTATGTTCGTTTTGCCATCCA 58.850 40.909 0.00 0.00 0.00 3.41
1094 1095 3.761218 TGTATGTTCGTTTTGCCATCCAT 59.239 39.130 0.00 0.00 0.00 3.41
1095 1096 3.959535 ATGTTCGTTTTGCCATCCATT 57.040 38.095 0.00 0.00 0.00 3.16
1096 1097 3.023946 TGTTCGTTTTGCCATCCATTG 57.976 42.857 0.00 0.00 0.00 2.82
1097 1098 2.363680 TGTTCGTTTTGCCATCCATTGT 59.636 40.909 0.00 0.00 0.00 2.71
1098 1099 2.986479 GTTCGTTTTGCCATCCATTGTC 59.014 45.455 0.00 0.00 0.00 3.18
1099 1100 2.234143 TCGTTTTGCCATCCATTGTCA 58.766 42.857 0.00 0.00 0.00 3.58
1100 1101 2.824936 TCGTTTTGCCATCCATTGTCAT 59.175 40.909 0.00 0.00 0.00 3.06
1101 1102 3.257873 TCGTTTTGCCATCCATTGTCATT 59.742 39.130 0.00 0.00 0.00 2.57
1102 1103 3.613737 CGTTTTGCCATCCATTGTCATTC 59.386 43.478 0.00 0.00 0.00 2.67
1103 1104 3.507103 TTTGCCATCCATTGTCATTCG 57.493 42.857 0.00 0.00 0.00 3.34
1104 1105 2.416680 TGCCATCCATTGTCATTCGA 57.583 45.000 0.00 0.00 0.00 3.71
1105 1106 2.720915 TGCCATCCATTGTCATTCGAA 58.279 42.857 0.00 0.00 0.00 3.71
1106 1107 3.087781 TGCCATCCATTGTCATTCGAAA 58.912 40.909 0.00 0.00 0.00 3.46
1107 1108 3.119531 TGCCATCCATTGTCATTCGAAAC 60.120 43.478 0.00 0.00 0.00 2.78
1108 1109 3.683989 CCATCCATTGTCATTCGAAACG 58.316 45.455 0.00 0.00 0.00 3.60
1109 1110 3.487376 CCATCCATTGTCATTCGAAACGG 60.487 47.826 0.00 0.00 0.00 4.44
1110 1111 3.046968 TCCATTGTCATTCGAAACGGA 57.953 42.857 0.00 0.00 0.00 4.69
1111 1112 2.739913 TCCATTGTCATTCGAAACGGAC 59.260 45.455 16.51 16.51 0.00 4.79
1112 1113 2.482336 CCATTGTCATTCGAAACGGACA 59.518 45.455 20.10 20.10 38.41 4.02
1115 1116 4.617808 TTGTCATTCGAAACGGACAAAA 57.382 36.364 27.01 14.91 44.56 2.44
1116 1117 4.822036 TGTCATTCGAAACGGACAAAAT 57.178 36.364 21.11 0.00 37.33 1.82
1117 1118 5.176407 TGTCATTCGAAACGGACAAAATT 57.824 34.783 21.11 0.00 37.33 1.82
1118 1119 5.583495 TGTCATTCGAAACGGACAAAATTT 58.417 33.333 21.11 0.00 37.33 1.82
1119 1120 5.457148 TGTCATTCGAAACGGACAAAATTTG 59.543 36.000 21.11 3.89 37.33 2.32
1120 1121 4.979197 TCATTCGAAACGGACAAAATTTGG 59.021 37.500 10.71 0.00 34.12 3.28
1121 1122 4.634184 TTCGAAACGGACAAAATTTGGA 57.366 36.364 10.71 0.00 34.12 3.53
1122 1123 3.954999 TCGAAACGGACAAAATTTGGAC 58.045 40.909 10.71 3.95 34.12 4.02
1123 1124 3.377485 TCGAAACGGACAAAATTTGGACA 59.623 39.130 10.71 0.00 34.12 4.02
1124 1125 4.106197 CGAAACGGACAAAATTTGGACAA 58.894 39.130 10.71 0.00 34.12 3.18
1125 1126 4.563184 CGAAACGGACAAAATTTGGACAAA 59.437 37.500 10.71 0.00 34.12 2.83
1126 1127 5.233263 CGAAACGGACAAAATTTGGACAAAT 59.767 36.000 10.71 4.52 42.35 2.32
1128 1129 5.982465 ACGGACAAAATTTGGACAAATTG 57.018 34.783 20.08 14.09 46.76 2.32
1129 1130 4.813697 ACGGACAAAATTTGGACAAATTGG 59.186 37.500 20.08 17.33 46.76 3.16
1130 1131 5.053145 CGGACAAAATTTGGACAAATTGGA 58.947 37.500 20.08 0.00 46.76 3.53
1131 1132 5.050431 CGGACAAAATTTGGACAAATTGGAC 60.050 40.000 20.08 15.42 46.76 4.02
1132 1133 5.050431 GGACAAAATTTGGACAAATTGGACG 60.050 40.000 20.08 12.63 46.76 4.79
1133 1134 5.423886 ACAAAATTTGGACAAATTGGACGT 58.576 33.333 20.08 13.12 46.76 4.34
1134 1135 5.522097 ACAAAATTTGGACAAATTGGACGTC 59.478 36.000 20.08 7.13 46.76 4.34
1135 1136 4.251543 AATTTGGACAAATTGGACGTCC 57.748 40.909 28.17 28.17 45.99 4.79
1137 1138 2.922779 GGACAAATTGGACGTCCGT 58.077 52.632 28.70 19.83 39.86 4.69
1138 1139 1.232119 GGACAAATTGGACGTCCGTT 58.768 50.000 28.70 22.21 39.86 4.44
1139 1140 1.605232 GGACAAATTGGACGTCCGTTT 59.395 47.619 28.70 26.08 39.86 3.60
1140 1141 2.603652 GGACAAATTGGACGTCCGTTTG 60.604 50.000 37.54 37.54 43.66 2.93
1141 1142 2.288458 GACAAATTGGACGTCCGTTTGA 59.712 45.455 41.55 23.73 42.15 2.69
1142 1143 2.289547 ACAAATTGGACGTCCGTTTGAG 59.710 45.455 41.55 29.15 42.15 3.02
1143 1144 1.519408 AATTGGACGTCCGTTTGAGG 58.481 50.000 28.70 0.00 39.43 3.86
1144 1145 0.395312 ATTGGACGTCCGTTTGAGGT 59.605 50.000 28.70 6.12 44.44 3.85
1146 1147 3.838468 GACGTCCGTTTGAGGTCG 58.162 61.111 3.51 1.55 45.71 4.79
1148 1149 3.534160 CGTCCGTTTGAGGTCGTG 58.466 61.111 0.00 0.00 37.87 4.35
1149 1150 2.654912 CGTCCGTTTGAGGTCGTGC 61.655 63.158 0.00 0.00 37.87 5.34
1150 1151 2.355363 TCCGTTTGAGGTCGTGCG 60.355 61.111 0.00 0.00 0.00 5.34
1151 1152 3.411351 CCGTTTGAGGTCGTGCGG 61.411 66.667 0.00 0.00 0.00 5.69
1152 1153 2.660552 CGTTTGAGGTCGTGCGGT 60.661 61.111 0.00 0.00 0.00 5.68
1153 1154 2.935955 GTTTGAGGTCGTGCGGTG 59.064 61.111 0.00 0.00 0.00 4.94
1154 1155 1.593209 GTTTGAGGTCGTGCGGTGA 60.593 57.895 0.00 0.00 0.00 4.02
1155 1156 1.144276 TTTGAGGTCGTGCGGTGAA 59.856 52.632 0.00 0.00 0.00 3.18
1156 1157 0.878523 TTTGAGGTCGTGCGGTGAAG 60.879 55.000 0.00 0.00 0.00 3.02
1157 1158 2.023414 TTGAGGTCGTGCGGTGAAGT 62.023 55.000 0.00 0.00 0.00 3.01
1158 1159 1.300697 GAGGTCGTGCGGTGAAGTT 60.301 57.895 0.00 0.00 0.00 2.66
1159 1160 1.557443 GAGGTCGTGCGGTGAAGTTG 61.557 60.000 0.00 0.00 0.00 3.16
1160 1161 2.604174 GGTCGTGCGGTGAAGTTGG 61.604 63.158 0.00 0.00 0.00 3.77
1161 1162 2.970324 TCGTGCGGTGAAGTTGGC 60.970 61.111 0.00 0.00 0.00 4.52
1162 1163 4.025401 CGTGCGGTGAAGTTGGCC 62.025 66.667 0.00 0.00 0.00 5.36
1163 1164 2.594592 GTGCGGTGAAGTTGGCCT 60.595 61.111 3.32 0.00 0.00 5.19
1164 1165 2.193536 GTGCGGTGAAGTTGGCCTT 61.194 57.895 3.32 0.00 35.59 4.35
1165 1166 0.887387 GTGCGGTGAAGTTGGCCTTA 60.887 55.000 3.32 0.00 32.03 2.69
1166 1167 0.037590 TGCGGTGAAGTTGGCCTTAT 59.962 50.000 3.32 0.00 32.03 1.73
1167 1168 1.173913 GCGGTGAAGTTGGCCTTATT 58.826 50.000 3.32 0.00 32.03 1.40
1168 1169 2.290387 TGCGGTGAAGTTGGCCTTATTA 60.290 45.455 3.32 0.00 32.03 0.98
1169 1170 2.096980 GCGGTGAAGTTGGCCTTATTAC 59.903 50.000 3.32 0.00 32.03 1.89
1170 1171 3.340034 CGGTGAAGTTGGCCTTATTACA 58.660 45.455 3.32 0.00 32.03 2.41
1171 1172 3.126343 CGGTGAAGTTGGCCTTATTACAC 59.874 47.826 3.32 7.58 32.03 2.90
1172 1173 3.126343 GGTGAAGTTGGCCTTATTACACG 59.874 47.826 3.32 0.00 32.03 4.49
1173 1174 3.749609 GTGAAGTTGGCCTTATTACACGT 59.250 43.478 3.32 0.00 32.03 4.49
1174 1175 3.749088 TGAAGTTGGCCTTATTACACGTG 59.251 43.478 15.48 15.48 32.03 4.49
1175 1176 3.412237 AGTTGGCCTTATTACACGTGT 57.588 42.857 26.52 26.52 0.00 4.49
1176 1177 4.540359 AGTTGGCCTTATTACACGTGTA 57.460 40.909 24.10 24.10 0.00 2.90
1177 1178 4.501071 AGTTGGCCTTATTACACGTGTAG 58.499 43.478 26.04 17.37 0.00 2.74
1391 1392 2.751436 CCCCAAGGTCCGCACATG 60.751 66.667 0.00 0.00 0.00 3.21
1398 1399 3.188786 GTCCGCACATGTCTCGCC 61.189 66.667 10.59 1.80 0.00 5.54
1409 1410 4.779733 TCTCGCCCACCCTCTCCC 62.780 72.222 0.00 0.00 0.00 4.30
1457 1458 0.739462 TCATGGTTGTCGATGCGTCC 60.739 55.000 0.00 0.00 31.39 4.79
1467 1468 3.735037 GATGCGTCCGAGGGGGTTC 62.735 68.421 0.00 0.00 37.00 3.62
1579 1580 2.742372 GCGCTGGTGAACCGATGT 60.742 61.111 0.00 0.00 39.43 3.06
1615 1616 1.904144 CTTGCGCTGATCCATTGTTG 58.096 50.000 9.73 0.00 0.00 3.33
1622 1623 3.076621 GCTGATCCATTGTTGTCTGTGA 58.923 45.455 0.00 0.00 0.00 3.58
1644 1645 1.148273 TCTTTGGCGTCTGGCTGTT 59.852 52.632 0.00 0.00 42.94 3.16
1647 1648 1.034838 TTTGGCGTCTGGCTGTTTGT 61.035 50.000 0.00 0.00 42.94 2.83
1779 1780 3.407443 GACTAGGACTCTAGGCGCT 57.593 57.895 7.64 0.00 45.50 5.92
1821 1822 0.980231 CCAGGAGTCCTTGCTAGGCT 60.980 60.000 9.68 9.83 41.69 4.58
1853 1854 1.198713 TCCAGTTGGATCTCAGCCTC 58.801 55.000 0.00 0.00 39.78 4.70
2040 2041 7.852945 CCTCTTATCGTCAATTTAATGTCTTGC 59.147 37.037 0.00 0.00 0.00 4.01
2063 2064 6.183361 TGCTGCAGATCTTAAGTTATCTGGAT 60.183 38.462 24.70 3.54 45.66 3.41
2189 2190 4.635765 CCAATACGTGATGTGGATCTTGTT 59.364 41.667 0.00 0.00 32.54 2.83
2198 2199 6.315393 GTGATGTGGATCTTGTTATTACCGTT 59.685 38.462 0.00 0.00 0.00 4.44
2303 2304 7.442666 ACTTGTTCTGATGAGGTTAGTTCTTTC 59.557 37.037 0.00 0.00 0.00 2.62
2601 2603 9.696917 AATTCATTTTCTTACAGAAATCACACC 57.303 29.630 0.00 0.00 43.06 4.16
2636 2638 5.653507 TGTTATAGCGTCGGAACATTTACT 58.346 37.500 0.00 0.00 0.00 2.24
2817 2819 2.669569 CCCTGTCCGGCAAGTGTG 60.670 66.667 0.00 0.00 0.00 3.82
2870 2872 8.213518 TGAGCCTTTCTGTAAATATTGATGAC 57.786 34.615 0.00 0.00 0.00 3.06
2967 2970 2.183679 AGATCAAGTGGTCTCAGGGTC 58.816 52.381 0.00 0.00 0.00 4.46
3337 3340 4.760715 ACTGCTTATTGATCTGGCATGATC 59.239 41.667 15.60 15.60 42.19 2.92
3438 3441 9.923143 AAATTAAACTGCCAAAAGGTCTTATAC 57.077 29.630 0.00 0.00 0.00 1.47
3569 3578 3.821841 CAAAAGCAACATTAGACCGTCC 58.178 45.455 0.00 0.00 0.00 4.79
3670 3679 7.829211 ACTTTGCATTCTTAGTAGAATTAGGCA 59.171 33.333 7.07 7.07 46.53 4.75
3838 3847 6.109156 AGTCACTGGTGTTGTTACATGATA 57.891 37.500 0.00 0.00 36.50 2.15
4150 4159 4.327680 AGCCTGGAACACATTTAAGAGAC 58.672 43.478 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.721718 CTCGTGTCCGATTTTGCCTC 59.278 55.000 0.00 0.00 43.27 4.70
1 2 1.298859 GCTCGTGTCCGATTTTGCCT 61.299 55.000 0.00 0.00 43.27 4.75
2 3 1.134694 GCTCGTGTCCGATTTTGCC 59.865 57.895 0.00 0.00 43.27 4.52
3 4 0.179215 CAGCTCGTGTCCGATTTTGC 60.179 55.000 0.00 0.00 43.27 3.68
4 5 0.443869 CCAGCTCGTGTCCGATTTTG 59.556 55.000 0.00 0.00 43.27 2.44
5 6 0.320374 TCCAGCTCGTGTCCGATTTT 59.680 50.000 0.00 0.00 43.27 1.82
6 7 0.389948 GTCCAGCTCGTGTCCGATTT 60.390 55.000 0.00 0.00 43.27 2.17
7 8 1.215647 GTCCAGCTCGTGTCCGATT 59.784 57.895 0.00 0.00 43.27 3.34
8 9 2.885861 GTCCAGCTCGTGTCCGAT 59.114 61.111 0.00 0.00 43.27 4.18
9 10 3.733960 CGTCCAGCTCGTGTCCGA 61.734 66.667 0.00 0.00 41.73 4.55
10 11 3.553437 AACGTCCAGCTCGTGTCCG 62.553 63.158 0.00 0.00 41.38 4.79
11 12 0.878961 AAAACGTCCAGCTCGTGTCC 60.879 55.000 0.00 0.00 41.38 4.02
12 13 0.935196 AAAAACGTCCAGCTCGTGTC 59.065 50.000 0.00 0.00 41.38 3.67
13 14 3.074594 AAAAACGTCCAGCTCGTGT 57.925 47.368 0.00 0.00 41.38 4.49
28 29 1.452145 GGACAGCAGGGACGCAAAAA 61.452 55.000 0.00 0.00 0.00 1.94
29 30 1.896660 GGACAGCAGGGACGCAAAA 60.897 57.895 0.00 0.00 0.00 2.44
30 31 2.281484 GGACAGCAGGGACGCAAA 60.281 61.111 0.00 0.00 0.00 3.68
31 32 4.680237 CGGACAGCAGGGACGCAA 62.680 66.667 0.00 0.00 0.00 4.85
42 43 1.007271 AGACGAACACAGCGGACAG 60.007 57.895 0.00 0.00 0.00 3.51
43 44 1.299850 CAGACGAACACAGCGGACA 60.300 57.895 0.00 0.00 0.00 4.02
44 45 2.658707 GCAGACGAACACAGCGGAC 61.659 63.158 0.00 0.00 0.00 4.79
45 46 2.355837 GCAGACGAACACAGCGGA 60.356 61.111 0.00 0.00 0.00 5.54
46 47 2.661537 TGCAGACGAACACAGCGG 60.662 61.111 0.00 0.00 0.00 5.52
47 48 2.237066 TGTGCAGACGAACACAGCG 61.237 57.895 0.00 0.00 41.67 5.18
48 49 3.717899 TGTGCAGACGAACACAGC 58.282 55.556 0.00 0.00 41.67 4.40
51 52 0.884704 ACCCATGTGCAGACGAACAC 60.885 55.000 0.00 0.00 37.31 3.32
52 53 0.602638 GACCCATGTGCAGACGAACA 60.603 55.000 0.00 0.00 0.00 3.18
53 54 0.320771 AGACCCATGTGCAGACGAAC 60.321 55.000 0.00 0.00 0.00 3.95
54 55 0.320683 CAGACCCATGTGCAGACGAA 60.321 55.000 0.00 0.00 0.00 3.85
55 56 1.293179 CAGACCCATGTGCAGACGA 59.707 57.895 0.00 0.00 0.00 4.20
56 57 2.393768 GCAGACCCATGTGCAGACG 61.394 63.158 1.41 0.00 44.49 4.18
57 58 2.042831 GGCAGACCCATGTGCAGAC 61.043 63.158 8.14 0.00 46.89 3.51
58 59 2.352422 GGCAGACCCATGTGCAGA 59.648 61.111 8.14 0.00 46.89 4.26
75 76 1.180029 CTGCTTTCAATGACAGGGGG 58.820 55.000 0.00 0.00 0.00 5.40
76 77 2.089980 CTCTGCTTTCAATGACAGGGG 58.910 52.381 0.00 0.00 0.00 4.79
77 78 2.089980 CCTCTGCTTTCAATGACAGGG 58.910 52.381 0.00 0.00 0.00 4.45
78 79 2.089980 CCCTCTGCTTTCAATGACAGG 58.910 52.381 0.00 0.00 0.00 4.00
79 80 2.746362 GTCCCTCTGCTTTCAATGACAG 59.254 50.000 0.00 0.00 0.00 3.51
80 81 2.553028 GGTCCCTCTGCTTTCAATGACA 60.553 50.000 0.00 0.00 0.00 3.58
81 82 2.087646 GGTCCCTCTGCTTTCAATGAC 58.912 52.381 0.00 0.00 0.00 3.06
82 83 1.004745 GGGTCCCTCTGCTTTCAATGA 59.995 52.381 0.00 0.00 0.00 2.57
83 84 1.272092 TGGGTCCCTCTGCTTTCAATG 60.272 52.381 10.00 0.00 0.00 2.82
84 85 1.075601 TGGGTCCCTCTGCTTTCAAT 58.924 50.000 10.00 0.00 0.00 2.57
85 86 0.110486 GTGGGTCCCTCTGCTTTCAA 59.890 55.000 10.00 0.00 0.00 2.69
86 87 1.761174 GTGGGTCCCTCTGCTTTCA 59.239 57.895 10.00 0.00 0.00 2.69
87 88 1.002011 GGTGGGTCCCTCTGCTTTC 60.002 63.158 10.00 0.00 0.00 2.62
88 89 3.171348 GGTGGGTCCCTCTGCTTT 58.829 61.111 10.00 0.00 0.00 3.51
97 98 4.295199 GGGTGGTTGGGTGGGTCC 62.295 72.222 0.00 0.00 0.00 4.46
98 99 3.503839 TGGGTGGTTGGGTGGGTC 61.504 66.667 0.00 0.00 0.00 4.46
99 100 3.828023 GTGGGTGGTTGGGTGGGT 61.828 66.667 0.00 0.00 0.00 4.51
100 101 4.614036 GGTGGGTGGTTGGGTGGG 62.614 72.222 0.00 0.00 0.00 4.61
101 102 4.614036 GGGTGGGTGGTTGGGTGG 62.614 72.222 0.00 0.00 0.00 4.61
102 103 3.159104 ATGGGTGGGTGGTTGGGTG 62.159 63.158 0.00 0.00 0.00 4.61
103 104 2.785389 ATGGGTGGGTGGTTGGGT 60.785 61.111 0.00 0.00 0.00 4.51
104 105 2.037208 GATGGGTGGGTGGTTGGG 59.963 66.667 0.00 0.00 0.00 4.12
105 106 2.037208 GGATGGGTGGGTGGTTGG 59.963 66.667 0.00 0.00 0.00 3.77
106 107 2.037208 GGGATGGGTGGGTGGTTG 59.963 66.667 0.00 0.00 0.00 3.77
107 108 3.272847 GGGGATGGGTGGGTGGTT 61.273 66.667 0.00 0.00 0.00 3.67
108 109 4.301662 AGGGGATGGGTGGGTGGT 62.302 66.667 0.00 0.00 0.00 4.16
109 110 3.420482 GAGGGGATGGGTGGGTGG 61.420 72.222 0.00 0.00 0.00 4.61
110 111 2.286425 AGAGGGGATGGGTGGGTG 60.286 66.667 0.00 0.00 0.00 4.61
111 112 2.042930 GAGAGGGGATGGGTGGGT 59.957 66.667 0.00 0.00 0.00 4.51
112 113 1.768077 GAGAGAGGGGATGGGTGGG 60.768 68.421 0.00 0.00 0.00 4.61
113 114 0.762461 GAGAGAGAGGGGATGGGTGG 60.762 65.000 0.00 0.00 0.00 4.61
114 115 0.264359 AGAGAGAGAGGGGATGGGTG 59.736 60.000 0.00 0.00 0.00 4.61
115 116 0.560688 GAGAGAGAGAGGGGATGGGT 59.439 60.000 0.00 0.00 0.00 4.51
116 117 0.178935 GGAGAGAGAGAGGGGATGGG 60.179 65.000 0.00 0.00 0.00 4.00
117 118 0.859760 AGGAGAGAGAGAGGGGATGG 59.140 60.000 0.00 0.00 0.00 3.51
118 119 2.091389 TGAAGGAGAGAGAGAGGGGATG 60.091 54.545 0.00 0.00 0.00 3.51
119 120 2.222271 TGAAGGAGAGAGAGAGGGGAT 58.778 52.381 0.00 0.00 0.00 3.85
120 121 1.687492 TGAAGGAGAGAGAGAGGGGA 58.313 55.000 0.00 0.00 0.00 4.81
121 122 2.773525 ATGAAGGAGAGAGAGAGGGG 57.226 55.000 0.00 0.00 0.00 4.79
122 123 3.432046 GCAAATGAAGGAGAGAGAGAGGG 60.432 52.174 0.00 0.00 0.00 4.30
123 124 3.197333 TGCAAATGAAGGAGAGAGAGAGG 59.803 47.826 0.00 0.00 0.00 3.69
124 125 4.081531 AGTGCAAATGAAGGAGAGAGAGAG 60.082 45.833 0.00 0.00 0.00 3.20
125 126 3.837146 AGTGCAAATGAAGGAGAGAGAGA 59.163 43.478 0.00 0.00 0.00 3.10
126 127 3.933955 CAGTGCAAATGAAGGAGAGAGAG 59.066 47.826 0.00 0.00 30.28 3.20
127 128 3.326006 ACAGTGCAAATGAAGGAGAGAGA 59.674 43.478 7.15 0.00 34.17 3.10
128 129 3.672808 ACAGTGCAAATGAAGGAGAGAG 58.327 45.455 7.15 0.00 34.17 3.20
129 130 3.777106 ACAGTGCAAATGAAGGAGAGA 57.223 42.857 7.15 0.00 34.17 3.10
130 131 3.190118 GGAACAGTGCAAATGAAGGAGAG 59.810 47.826 7.15 0.00 34.17 3.20
131 132 3.149196 GGAACAGTGCAAATGAAGGAGA 58.851 45.455 7.15 0.00 34.17 3.71
132 133 3.152341 AGGAACAGTGCAAATGAAGGAG 58.848 45.455 7.15 0.00 34.17 3.69
133 134 3.228188 AGGAACAGTGCAAATGAAGGA 57.772 42.857 7.15 0.00 34.17 3.36
134 135 3.645884 CAAGGAACAGTGCAAATGAAGG 58.354 45.455 7.15 0.00 34.17 3.46
135 136 3.054878 GCAAGGAACAGTGCAAATGAAG 58.945 45.455 7.15 0.00 40.64 3.02
136 137 2.429971 TGCAAGGAACAGTGCAAATGAA 59.570 40.909 7.15 0.00 46.06 2.57
137 138 2.030371 TGCAAGGAACAGTGCAAATGA 58.970 42.857 7.15 0.00 46.06 2.57
138 139 2.512485 TGCAAGGAACAGTGCAAATG 57.488 45.000 0.00 0.00 46.06 2.32
143 144 1.399791 GAGCTATGCAAGGAACAGTGC 59.600 52.381 0.00 0.00 41.20 4.40
144 145 1.662629 CGAGCTATGCAAGGAACAGTG 59.337 52.381 0.00 0.00 0.00 3.66
145 146 1.276421 ACGAGCTATGCAAGGAACAGT 59.724 47.619 0.00 0.00 0.00 3.55
146 147 1.929836 GACGAGCTATGCAAGGAACAG 59.070 52.381 0.00 0.00 0.00 3.16
147 148 1.735700 CGACGAGCTATGCAAGGAACA 60.736 52.381 0.00 0.00 0.00 3.18
148 149 0.924090 CGACGAGCTATGCAAGGAAC 59.076 55.000 0.00 0.00 0.00 3.62
149 150 0.815095 TCGACGAGCTATGCAAGGAA 59.185 50.000 0.00 0.00 0.00 3.36
150 151 0.100682 GTCGACGAGCTATGCAAGGA 59.899 55.000 0.00 0.00 0.00 3.36
151 152 1.202973 CGTCGACGAGCTATGCAAGG 61.203 60.000 33.35 0.00 43.02 3.61
152 153 1.802300 GCGTCGACGAGCTATGCAAG 61.802 60.000 39.74 8.22 43.02 4.01
153 154 1.872234 GCGTCGACGAGCTATGCAA 60.872 57.895 39.74 0.00 43.02 4.08
154 155 2.277949 GCGTCGACGAGCTATGCA 60.278 61.111 39.74 0.00 43.02 3.96
155 156 3.025176 GGCGTCGACGAGCTATGC 61.025 66.667 39.74 20.32 43.02 3.14
156 157 2.722548 CGGCGTCGACGAGCTATG 60.723 66.667 39.74 17.78 43.02 2.23
157 158 4.609247 GCGGCGTCGACGAGCTAT 62.609 66.667 39.74 0.00 43.02 2.97
174 175 2.954684 TACTTGTGCCCTGCTCCGG 61.955 63.158 0.00 0.00 0.00 5.14
175 176 1.741770 GTACTTGTGCCCTGCTCCG 60.742 63.158 0.00 0.00 0.00 4.63
176 177 1.741770 CGTACTTGTGCCCTGCTCC 60.742 63.158 0.00 0.00 0.00 4.70
177 178 2.391389 GCGTACTTGTGCCCTGCTC 61.391 63.158 0.00 0.00 0.00 4.26
178 179 2.358737 GCGTACTTGTGCCCTGCT 60.359 61.111 0.00 0.00 0.00 4.24
179 180 2.040544 ATGCGTACTTGTGCCCTGC 61.041 57.895 0.00 0.00 0.00 4.85
180 181 1.796151 CATGCGTACTTGTGCCCTG 59.204 57.895 0.00 0.00 0.00 4.45
181 182 2.040544 GCATGCGTACTTGTGCCCT 61.041 57.895 0.00 0.00 0.00 5.19
182 183 2.485122 GCATGCGTACTTGTGCCC 59.515 61.111 0.00 0.00 0.00 5.36
184 185 1.135315 CTGGCATGCGTACTTGTGC 59.865 57.895 12.44 5.08 36.88 4.57
185 186 1.135315 GCTGGCATGCGTACTTGTG 59.865 57.895 12.44 0.00 0.00 3.33
186 187 2.040544 GGCTGGCATGCGTACTTGT 61.041 57.895 12.44 0.00 0.00 3.16
187 188 2.039974 TGGCTGGCATGCGTACTTG 61.040 57.895 12.44 0.00 0.00 3.16
188 189 2.040544 GTGGCTGGCATGCGTACTT 61.041 57.895 12.44 0.00 0.00 2.24
189 190 2.436646 GTGGCTGGCATGCGTACT 60.437 61.111 12.44 0.00 0.00 2.73
190 191 2.436646 AGTGGCTGGCATGCGTAC 60.437 61.111 12.44 6.00 0.00 3.67
191 192 2.436469 CAGTGGCTGGCATGCGTA 60.436 61.111 12.44 2.02 0.00 4.42
878 879 4.314440 TCGCACCCTGCCTGTGTC 62.314 66.667 0.00 0.00 41.12 3.67
879 880 4.320456 CTCGCACCCTGCCTGTGT 62.320 66.667 0.00 0.00 41.12 3.72
911 912 4.504916 CTCACTCCTGCCCGCTCG 62.505 72.222 0.00 0.00 0.00 5.03
912 913 4.828925 GCTCACTCCTGCCCGCTC 62.829 72.222 0.00 0.00 0.00 5.03
934 935 4.443266 AAGCTCGTCTGCCCTCGC 62.443 66.667 0.00 0.00 0.00 5.03
935 936 2.507992 CAAGCTCGTCTGCCCTCG 60.508 66.667 0.00 0.00 0.00 4.63
936 937 2.125350 CCAAGCTCGTCTGCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
937 938 4.400961 GCCAAGCTCGTCTGCCCT 62.401 66.667 0.00 0.00 0.00 5.19
938 939 3.984193 ATGCCAAGCTCGTCTGCCC 62.984 63.158 0.00 0.00 0.00 5.36
939 940 2.437359 ATGCCAAGCTCGTCTGCC 60.437 61.111 0.00 0.00 0.00 4.85
940 941 2.806856 CGATGCCAAGCTCGTCTGC 61.807 63.158 0.00 0.00 0.00 4.26
941 942 2.169789 CCGATGCCAAGCTCGTCTG 61.170 63.158 0.00 0.00 33.11 3.51
942 943 2.185350 CCGATGCCAAGCTCGTCT 59.815 61.111 0.00 0.00 33.11 4.18
943 944 3.567797 GCCGATGCCAAGCTCGTC 61.568 66.667 0.00 0.00 33.11 4.20
962 963 4.724602 TCGCTCTGTCGGTGCAGC 62.725 66.667 5.64 5.64 36.49 5.25
963 964 2.505777 CTCGCTCTGTCGGTGCAG 60.506 66.667 6.53 0.09 37.81 4.41
964 965 2.982744 CTCTCGCTCTGTCGGTGCA 61.983 63.158 6.53 0.00 34.47 4.57
965 966 2.202544 CTCTCGCTCTGTCGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
966 967 2.202544 GCTCTCGCTCTGTCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
967 968 2.673341 TGCTCTCGCTCTGTCGGT 60.673 61.111 0.00 0.00 36.97 4.69
968 969 2.202544 GTGCTCTCGCTCTGTCGG 60.203 66.667 0.00 0.00 36.97 4.79
969 970 2.575525 CGTGCTCTCGCTCTGTCG 60.576 66.667 0.00 0.00 36.97 4.35
970 971 1.226267 CTCGTGCTCTCGCTCTGTC 60.226 63.158 0.00 0.00 36.97 3.51
971 972 2.874019 CTCGTGCTCTCGCTCTGT 59.126 61.111 0.00 0.00 36.97 3.41
972 973 2.579249 GCTCGTGCTCTCGCTCTG 60.579 66.667 1.41 0.00 36.97 3.35
986 987 3.781770 CTCATCCGCCCGTGAGCTC 62.782 68.421 6.82 6.82 35.87 4.09
987 988 3.842923 CTCATCCGCCCGTGAGCT 61.843 66.667 0.00 0.00 35.87 4.09
988 989 4.899239 CCTCATCCGCCCGTGAGC 62.899 72.222 3.58 0.00 40.34 4.26
989 990 4.899239 GCCTCATCCGCCCGTGAG 62.899 72.222 2.43 2.43 41.13 3.51
999 1000 4.819761 TCAGCCGCACGCCTCATC 62.820 66.667 0.00 0.00 38.78 2.92
1000 1001 4.827087 CTCAGCCGCACGCCTCAT 62.827 66.667 0.00 0.00 38.78 2.90
1007 1008 3.649277 ATGTCCGTCTCAGCCGCAC 62.649 63.158 0.00 0.00 0.00 5.34
1008 1009 2.449031 AAATGTCCGTCTCAGCCGCA 62.449 55.000 0.00 0.00 0.00 5.69
1009 1010 1.298859 AAAATGTCCGTCTCAGCCGC 61.299 55.000 0.00 0.00 0.00 6.53
1010 1011 2.004583 TAAAATGTCCGTCTCAGCCG 57.995 50.000 0.00 0.00 0.00 5.52
1011 1012 2.678336 CCTTAAAATGTCCGTCTCAGCC 59.322 50.000 0.00 0.00 0.00 4.85
1012 1013 3.335579 ACCTTAAAATGTCCGTCTCAGC 58.664 45.455 0.00 0.00 0.00 4.26
1013 1014 3.612860 CGACCTTAAAATGTCCGTCTCAG 59.387 47.826 0.00 0.00 0.00 3.35
1014 1015 3.006110 ACGACCTTAAAATGTCCGTCTCA 59.994 43.478 0.00 0.00 0.00 3.27
1015 1016 3.582780 ACGACCTTAAAATGTCCGTCTC 58.417 45.455 0.00 0.00 0.00 3.36
1016 1017 3.672767 ACGACCTTAAAATGTCCGTCT 57.327 42.857 0.00 0.00 0.00 4.18
1017 1018 4.460505 CAAACGACCTTAAAATGTCCGTC 58.539 43.478 0.00 0.00 0.00 4.79
1018 1019 3.251487 CCAAACGACCTTAAAATGTCCGT 59.749 43.478 0.00 0.00 0.00 4.69
1019 1020 3.251487 ACCAAACGACCTTAAAATGTCCG 59.749 43.478 0.00 0.00 0.00 4.79
1020 1021 4.542735 CACCAAACGACCTTAAAATGTCC 58.457 43.478 0.00 0.00 0.00 4.02
1021 1022 3.978855 GCACCAAACGACCTTAAAATGTC 59.021 43.478 0.00 0.00 0.00 3.06
1022 1023 3.549221 CGCACCAAACGACCTTAAAATGT 60.549 43.478 0.00 0.00 0.00 2.71
1023 1024 2.977169 CGCACCAAACGACCTTAAAATG 59.023 45.455 0.00 0.00 0.00 2.32
1024 1025 2.619646 ACGCACCAAACGACCTTAAAAT 59.380 40.909 0.00 0.00 0.00 1.82
1025 1026 2.015587 ACGCACCAAACGACCTTAAAA 58.984 42.857 0.00 0.00 0.00 1.52
1026 1027 1.666054 ACGCACCAAACGACCTTAAA 58.334 45.000 0.00 0.00 0.00 1.52
1027 1028 1.666054 AACGCACCAAACGACCTTAA 58.334 45.000 0.00 0.00 0.00 1.85
1028 1029 1.331138 CAAACGCACCAAACGACCTTA 59.669 47.619 0.00 0.00 0.00 2.69
1029 1030 0.099791 CAAACGCACCAAACGACCTT 59.900 50.000 0.00 0.00 0.00 3.50
1030 1031 1.720694 CCAAACGCACCAAACGACCT 61.721 55.000 0.00 0.00 0.00 3.85
1031 1032 1.298788 CCAAACGCACCAAACGACC 60.299 57.895 0.00 0.00 0.00 4.79
1032 1033 1.942223 GCCAAACGCACCAAACGAC 60.942 57.895 0.00 0.00 37.47 4.34
1033 1034 2.409651 GCCAAACGCACCAAACGA 59.590 55.556 0.00 0.00 37.47 3.85
1034 1035 3.021788 CGCCAAACGCACCAAACG 61.022 61.111 0.00 0.00 37.30 3.60
1048 1049 0.539986 TGAATAGGGTTGGAGACGCC 59.460 55.000 0.00 0.00 41.84 5.68
1049 1050 1.480954 TCTGAATAGGGTTGGAGACGC 59.519 52.381 0.00 0.00 41.25 5.19
1050 1051 2.496070 TGTCTGAATAGGGTTGGAGACG 59.504 50.000 0.00 0.00 33.92 4.18
1051 1052 4.080863 ACATGTCTGAATAGGGTTGGAGAC 60.081 45.833 0.00 0.00 0.00 3.36
1052 1053 4.104086 ACATGTCTGAATAGGGTTGGAGA 58.896 43.478 0.00 0.00 0.00 3.71
1053 1054 4.494091 ACATGTCTGAATAGGGTTGGAG 57.506 45.455 0.00 0.00 0.00 3.86
1054 1055 5.428457 ACATACATGTCTGAATAGGGTTGGA 59.572 40.000 17.29 0.00 35.87 3.53
1055 1056 5.684704 ACATACATGTCTGAATAGGGTTGG 58.315 41.667 17.29 0.00 35.87 3.77
1056 1057 6.018751 CGAACATACATGTCTGAATAGGGTTG 60.019 42.308 17.29 0.00 40.80 3.77
1057 1058 6.049149 CGAACATACATGTCTGAATAGGGTT 58.951 40.000 17.29 0.10 40.80 4.11
1058 1059 5.128827 ACGAACATACATGTCTGAATAGGGT 59.871 40.000 17.29 0.00 40.80 4.34
1059 1060 5.601662 ACGAACATACATGTCTGAATAGGG 58.398 41.667 17.29 3.87 40.80 3.53
1060 1061 7.539712 AAACGAACATACATGTCTGAATAGG 57.460 36.000 17.29 0.00 40.80 2.57
1061 1062 7.426456 GCAAAACGAACATACATGTCTGAATAG 59.574 37.037 17.29 8.66 40.80 1.73
1062 1063 7.240674 GCAAAACGAACATACATGTCTGAATA 58.759 34.615 17.29 0.00 40.80 1.75
1063 1064 6.086222 GCAAAACGAACATACATGTCTGAAT 58.914 36.000 17.29 6.18 40.80 2.57
1064 1065 5.448438 GCAAAACGAACATACATGTCTGAA 58.552 37.500 17.29 0.00 40.80 3.02
1065 1066 4.083537 GGCAAAACGAACATACATGTCTGA 60.084 41.667 17.29 0.00 40.80 3.27
1066 1067 4.158384 GGCAAAACGAACATACATGTCTG 58.842 43.478 0.00 5.48 40.80 3.51
1067 1068 3.818210 TGGCAAAACGAACATACATGTCT 59.182 39.130 0.00 0.00 40.80 3.41
1068 1069 4.153958 TGGCAAAACGAACATACATGTC 57.846 40.909 0.00 0.00 40.80 3.06
1069 1070 4.380444 GGATGGCAAAACGAACATACATGT 60.380 41.667 2.69 2.69 44.20 3.21
1070 1071 4.104776 GGATGGCAAAACGAACATACATG 58.895 43.478 0.00 0.00 0.00 3.21
1071 1072 3.761218 TGGATGGCAAAACGAACATACAT 59.239 39.130 0.00 0.00 29.62 2.29
1072 1073 3.149981 TGGATGGCAAAACGAACATACA 58.850 40.909 0.00 0.00 32.04 2.29
1073 1074 3.840890 TGGATGGCAAAACGAACATAC 57.159 42.857 0.00 0.00 0.00 2.39
1074 1075 4.219507 ACAATGGATGGCAAAACGAACATA 59.780 37.500 0.00 0.00 0.00 2.29
1075 1076 3.006752 ACAATGGATGGCAAAACGAACAT 59.993 39.130 0.00 0.00 0.00 2.71
1076 1077 2.363680 ACAATGGATGGCAAAACGAACA 59.636 40.909 0.00 0.00 0.00 3.18
1077 1078 2.986479 GACAATGGATGGCAAAACGAAC 59.014 45.455 0.00 0.00 36.87 3.95
1078 1079 2.625314 TGACAATGGATGGCAAAACGAA 59.375 40.909 0.00 0.00 46.71 3.85
1079 1080 2.234143 TGACAATGGATGGCAAAACGA 58.766 42.857 0.00 0.00 46.71 3.85
1080 1081 2.721274 TGACAATGGATGGCAAAACG 57.279 45.000 0.00 0.00 46.71 3.60
1086 1087 3.438360 GTTTCGAATGACAATGGATGGC 58.562 45.455 0.00 0.00 37.68 4.40
1087 1088 3.487376 CCGTTTCGAATGACAATGGATGG 60.487 47.826 0.00 0.00 0.00 3.51
1088 1089 3.373748 TCCGTTTCGAATGACAATGGATG 59.626 43.478 0.00 0.00 31.32 3.51
1089 1090 3.374058 GTCCGTTTCGAATGACAATGGAT 59.626 43.478 10.20 0.00 35.11 3.41
1090 1091 2.739913 GTCCGTTTCGAATGACAATGGA 59.260 45.455 14.52 9.89 32.60 3.41
1091 1092 2.482336 TGTCCGTTTCGAATGACAATGG 59.518 45.455 17.95 10.00 34.98 3.16
1092 1093 3.804518 TGTCCGTTTCGAATGACAATG 57.195 42.857 17.95 2.05 34.98 2.82
1093 1094 4.822036 TTTGTCCGTTTCGAATGACAAT 57.178 36.364 25.77 0.00 44.50 2.71
1094 1095 4.617808 TTTTGTCCGTTTCGAATGACAA 57.382 36.364 23.42 23.42 43.73 3.18
1095 1096 4.822036 ATTTTGTCCGTTTCGAATGACA 57.178 36.364 16.90 16.90 36.04 3.58
1096 1097 5.108027 CCAAATTTTGTCCGTTTCGAATGAC 60.108 40.000 0.00 7.32 0.00 3.06
1097 1098 4.979197 CCAAATTTTGTCCGTTTCGAATGA 59.021 37.500 0.00 0.00 0.00 2.57
1098 1099 4.979197 TCCAAATTTTGTCCGTTTCGAATG 59.021 37.500 0.00 0.00 0.00 2.67
1099 1100 4.979815 GTCCAAATTTTGTCCGTTTCGAAT 59.020 37.500 0.00 0.00 0.00 3.34
1100 1101 4.142447 TGTCCAAATTTTGTCCGTTTCGAA 60.142 37.500 8.26 0.00 0.00 3.71
1101 1102 3.377485 TGTCCAAATTTTGTCCGTTTCGA 59.623 39.130 8.26 0.00 0.00 3.71
1102 1103 3.696898 TGTCCAAATTTTGTCCGTTTCG 58.303 40.909 8.26 0.00 0.00 3.46
1103 1104 6.597262 ATTTGTCCAAATTTTGTCCGTTTC 57.403 33.333 8.26 0.00 37.74 2.78
1104 1105 6.183360 CCAATTTGTCCAAATTTTGTCCGTTT 60.183 34.615 13.79 0.00 45.67 3.60
1105 1106 5.295540 CCAATTTGTCCAAATTTTGTCCGTT 59.704 36.000 13.79 0.00 45.67 4.44
1106 1107 4.813697 CCAATTTGTCCAAATTTTGTCCGT 59.186 37.500 13.79 0.00 45.67 4.69
1107 1108 5.050431 GTCCAATTTGTCCAAATTTTGTCCG 60.050 40.000 13.79 4.04 45.67 4.79
1108 1109 5.050431 CGTCCAATTTGTCCAAATTTTGTCC 60.050 40.000 13.79 0.00 45.67 4.02
1109 1110 5.522097 ACGTCCAATTTGTCCAAATTTTGTC 59.478 36.000 13.79 6.95 45.67 3.18
1110 1111 5.423886 ACGTCCAATTTGTCCAAATTTTGT 58.576 33.333 13.79 8.34 45.67 2.83
1111 1112 5.973158 GACGTCCAATTTGTCCAAATTTTG 58.027 37.500 13.79 9.35 45.67 2.44
1119 1120 1.232119 AACGGACGTCCAATTTGTCC 58.768 50.000 32.80 4.66 46.91 4.02
1120 1121 2.288458 TCAAACGGACGTCCAATTTGTC 59.712 45.455 36.43 14.71 40.20 3.18
1121 1122 2.289547 CTCAAACGGACGTCCAATTTGT 59.710 45.455 36.43 25.17 40.20 2.83
1122 1123 2.350388 CCTCAAACGGACGTCCAATTTG 60.350 50.000 34.73 34.73 40.44 2.32
1123 1124 1.877443 CCTCAAACGGACGTCCAATTT 59.123 47.619 32.80 26.92 35.14 1.82
1124 1125 1.202722 ACCTCAAACGGACGTCCAATT 60.203 47.619 32.80 23.06 35.14 2.32
1125 1126 0.395312 ACCTCAAACGGACGTCCAAT 59.605 50.000 32.80 18.47 35.14 3.16
1126 1127 0.249573 GACCTCAAACGGACGTCCAA 60.250 55.000 32.80 12.15 35.14 3.53
1127 1128 1.364901 GACCTCAAACGGACGTCCA 59.635 57.895 32.80 13.24 35.14 4.02
1128 1129 1.731969 CGACCTCAAACGGACGTCC 60.732 63.158 25.28 25.28 37.43 4.79
1129 1130 3.838468 CGACCTCAAACGGACGTC 58.162 61.111 7.13 7.13 37.43 4.34
1131 1132 2.654912 GCACGACCTCAAACGGACG 61.655 63.158 0.00 0.00 45.39 4.79
1132 1133 2.654912 CGCACGACCTCAAACGGAC 61.655 63.158 0.00 0.00 0.00 4.79
1133 1134 2.355363 CGCACGACCTCAAACGGA 60.355 61.111 0.00 0.00 0.00 4.69
1134 1135 3.411351 CCGCACGACCTCAAACGG 61.411 66.667 0.00 0.00 0.00 4.44
1135 1136 2.660552 ACCGCACGACCTCAAACG 60.661 61.111 0.00 0.00 0.00 3.60
1136 1137 1.155424 TTCACCGCACGACCTCAAAC 61.155 55.000 0.00 0.00 0.00 2.93
1137 1138 0.878523 CTTCACCGCACGACCTCAAA 60.879 55.000 0.00 0.00 0.00 2.69
1138 1139 1.300620 CTTCACCGCACGACCTCAA 60.301 57.895 0.00 0.00 0.00 3.02
1139 1140 2.023414 AACTTCACCGCACGACCTCA 62.023 55.000 0.00 0.00 0.00 3.86
1140 1141 1.300697 AACTTCACCGCACGACCTC 60.301 57.895 0.00 0.00 0.00 3.85
1141 1142 1.594293 CAACTTCACCGCACGACCT 60.594 57.895 0.00 0.00 0.00 3.85
1142 1143 2.604174 CCAACTTCACCGCACGACC 61.604 63.158 0.00 0.00 0.00 4.79
1143 1144 2.935955 CCAACTTCACCGCACGAC 59.064 61.111 0.00 0.00 0.00 4.34
1144 1145 2.970324 GCCAACTTCACCGCACGA 60.970 61.111 0.00 0.00 0.00 4.35
1145 1146 4.025401 GGCCAACTTCACCGCACG 62.025 66.667 0.00 0.00 0.00 5.34
1146 1147 0.887387 TAAGGCCAACTTCACCGCAC 60.887 55.000 5.01 0.00 40.64 5.34
1147 1148 0.037590 ATAAGGCCAACTTCACCGCA 59.962 50.000 5.01 0.00 40.64 5.69
1148 1149 1.173913 AATAAGGCCAACTTCACCGC 58.826 50.000 5.01 0.00 40.64 5.68
1149 1150 3.126343 GTGTAATAAGGCCAACTTCACCG 59.874 47.826 5.01 0.00 40.64 4.94
1150 1151 3.126343 CGTGTAATAAGGCCAACTTCACC 59.874 47.826 5.01 0.00 40.64 4.02
1151 1152 3.749609 ACGTGTAATAAGGCCAACTTCAC 59.250 43.478 5.01 6.23 40.64 3.18
1152 1153 3.749088 CACGTGTAATAAGGCCAACTTCA 59.251 43.478 7.58 0.00 40.64 3.02
1153 1154 3.749609 ACACGTGTAATAAGGCCAACTTC 59.250 43.478 21.98 0.00 40.64 3.01
1154 1155 3.746940 ACACGTGTAATAAGGCCAACTT 58.253 40.909 21.98 0.00 43.28 2.66
1155 1156 3.412237 ACACGTGTAATAAGGCCAACT 57.588 42.857 21.98 0.00 0.00 3.16
1156 1157 4.092383 CACTACACGTGTAATAAGGCCAAC 59.908 45.833 27.16 0.00 38.84 3.77
1157 1158 4.247258 CACTACACGTGTAATAAGGCCAA 58.753 43.478 27.16 5.14 38.84 4.52
1158 1159 3.852286 CACTACACGTGTAATAAGGCCA 58.148 45.455 27.16 5.88 38.84 5.36
1159 1160 2.606272 GCACTACACGTGTAATAAGGCC 59.394 50.000 27.16 10.36 45.57 5.19
1160 1161 3.306166 CAGCACTACACGTGTAATAAGGC 59.694 47.826 27.16 22.95 45.57 4.35
1161 1162 4.740268 TCAGCACTACACGTGTAATAAGG 58.260 43.478 27.16 17.94 45.57 2.69
1162 1163 4.265556 GCTCAGCACTACACGTGTAATAAG 59.734 45.833 27.16 20.10 45.57 1.73
1163 1164 4.171005 GCTCAGCACTACACGTGTAATAA 58.829 43.478 27.16 9.23 45.57 1.40
1164 1165 3.729762 CGCTCAGCACTACACGTGTAATA 60.730 47.826 27.16 9.61 45.57 0.98
1165 1166 2.607187 GCTCAGCACTACACGTGTAAT 58.393 47.619 27.16 16.93 45.57 1.89
1166 1167 1.664874 CGCTCAGCACTACACGTGTAA 60.665 52.381 27.16 11.97 45.57 2.41
1167 1168 0.109919 CGCTCAGCACTACACGTGTA 60.110 55.000 25.88 25.88 45.57 2.90
1168 1169 1.371758 CGCTCAGCACTACACGTGT 60.372 57.895 26.52 26.52 45.57 4.49
1169 1170 1.337817 GACGCTCAGCACTACACGTG 61.338 60.000 15.48 15.48 46.58 4.49
1170 1171 1.081376 GACGCTCAGCACTACACGT 60.081 57.895 0.00 0.00 36.30 4.49
1171 1172 1.801913 GGACGCTCAGCACTACACG 60.802 63.158 0.00 0.00 0.00 4.49
1172 1173 1.801913 CGGACGCTCAGCACTACAC 60.802 63.158 0.00 0.00 0.00 2.90
1173 1174 2.566529 CGGACGCTCAGCACTACA 59.433 61.111 0.00 0.00 0.00 2.74
1174 1175 2.202623 CCGGACGCTCAGCACTAC 60.203 66.667 0.00 0.00 0.00 2.73
1175 1176 2.360726 TCCGGACGCTCAGCACTA 60.361 61.111 0.00 0.00 0.00 2.74
1176 1177 4.057428 GTCCGGACGCTCAGCACT 62.057 66.667 20.85 0.00 0.00 4.40
1391 1392 3.462678 GGAGAGGGTGGGCGAGAC 61.463 72.222 0.00 0.00 0.00 3.36
1398 1399 0.614979 TCTCGAAAGGGAGAGGGTGG 60.615 60.000 0.00 0.00 38.12 4.61
1409 1410 3.363673 GCGTAACCAAGGTTTCTCGAAAG 60.364 47.826 10.13 0.00 39.31 2.62
1441 1442 2.431771 CGGACGCATCGACAACCA 60.432 61.111 0.00 0.00 0.00 3.67
1467 1468 0.605589 GAACTTGGGAGTCAACGGGG 60.606 60.000 0.00 0.00 34.21 5.73
1470 1471 0.949105 CGGGAACTTGGGAGTCAACG 60.949 60.000 0.00 0.00 34.21 4.10
1473 1474 1.752198 CACGGGAACTTGGGAGTCA 59.248 57.895 0.00 0.00 34.21 3.41
1515 1516 1.458777 AACTCCACTCCACCACCGA 60.459 57.895 0.00 0.00 0.00 4.69
1516 1517 1.004918 GAACTCCACTCCACCACCG 60.005 63.158 0.00 0.00 0.00 4.94
1615 1616 1.862806 GCCAAAGACGCTCACAGAC 59.137 57.895 0.00 0.00 0.00 3.51
1622 1623 2.357517 CCAGACGCCAAAGACGCT 60.358 61.111 0.00 0.00 0.00 5.07
1779 1780 2.173782 ACCCACCAGTTCATACAACACA 59.826 45.455 0.00 0.00 0.00 3.72
1853 1854 8.883731 AGATTTCTCAATAACGGACAGTAATTG 58.116 33.333 0.00 0.00 0.00 2.32
2040 2041 7.440198 TCATCCAGATAACTTAAGATCTGCAG 58.560 38.462 20.96 7.63 45.16 4.41
2063 2064 1.185315 TGTGGACTCTGCATCGATCA 58.815 50.000 0.00 0.00 0.00 2.92
2109 2110 1.146263 GGGGCTTGCGCTGTAGTAT 59.854 57.895 9.73 0.00 36.09 2.12
2189 2190 2.681390 GCCATCACCACCAACGGTAATA 60.681 50.000 0.00 0.00 37.07 0.98
2198 2199 0.106268 AAAGTGTGCCATCACCACCA 60.106 50.000 0.00 0.00 42.46 4.17
2521 2523 1.899814 ACATACCTGCTCGAAGTTCCA 59.100 47.619 0.00 0.00 0.00 3.53
2601 2603 4.177026 ACGCTATAACAGAAAGCAGAGTG 58.823 43.478 0.00 0.00 35.98 3.51
2636 2638 9.342308 AGAGAACAGTAACATTCAAGAAATTCA 57.658 29.630 0.00 0.00 0.00 2.57
2817 2819 1.641577 ACCTTAATGAGAAGCGCGAC 58.358 50.000 12.10 0.04 0.00 5.19
2870 2872 5.645067 TGCCAGTTAGAATTGATCACAGAAG 59.355 40.000 0.00 0.00 0.00 2.85
2967 2970 1.394917 GTTGATCCAGTAGCTGTTGCG 59.605 52.381 0.00 0.00 45.42 4.85
3337 3340 2.856222 AGAACTCCACTTGCCTCAAAG 58.144 47.619 0.00 0.00 0.00 2.77
3429 3432 7.147707 ACACCCTCTGTTCATTAGTATAAGACC 60.148 40.741 0.00 0.00 0.00 3.85
3621 3630 1.001746 TCTCTGCTTCAGAACTGCTGG 59.998 52.381 0.00 0.00 44.98 4.85
3838 3847 1.442769 CAGAGCATAACGGCACAAGT 58.557 50.000 0.00 0.00 35.83 3.16
4150 4159 3.531538 TGTAAGGAAGAGGCTAATTGCG 58.468 45.455 0.00 0.00 44.05 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.