Multiple sequence alignment - TraesCS5A01G183000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G183000 chr5A 100.000 2324 0 0 1 2324 382547916 382545593 0.000000e+00 4292.0
1 TraesCS5A01G183000 chr5A 79.683 945 154 23 444 1369 225601197 225602122 0.000000e+00 647.0
2 TraesCS5A01G183000 chr5B 87.710 1725 160 23 448 2166 330747097 330745419 0.000000e+00 1964.0
3 TraesCS5A01G183000 chr5B 81.577 1129 169 25 504 1617 212396946 212395842 0.000000e+00 896.0
4 TraesCS5A01G183000 chr5B 92.683 164 9 1 2160 2323 330745379 330745219 1.390000e-57 233.0
5 TraesCS5A01G183000 chr5D 81.563 1139 168 23 504 1617 201665774 201664653 0.000000e+00 902.0
6 TraesCS5A01G183000 chr5D 91.324 657 44 8 1513 2166 290054891 290054245 0.000000e+00 885.0
7 TraesCS5A01G183000 chr5D 93.333 165 7 2 2160 2323 290054123 290053962 8.300000e-60 241.0
8 TraesCS5A01G183000 chr6B 82.609 920 151 6 688 1600 409292869 409291952 0.000000e+00 804.0
9 TraesCS5A01G183000 chr6B 79.502 1205 175 39 448 1616 291775188 291774020 0.000000e+00 791.0
10 TraesCS5A01G183000 chr6B 91.045 67 6 0 1618 1684 409293698 409293632 8.840000e-15 91.6
11 TraesCS5A01G183000 chr2A 80.741 945 146 12 685 1621 190316929 190316013 0.000000e+00 704.0
12 TraesCS5A01G183000 chr2D 80.516 852 133 11 778 1621 177459082 177458256 7.050000e-175 623.0
13 TraesCS5A01G183000 chr7D 79.688 896 150 16 685 1574 351590940 351590071 3.280000e-173 617.0
14 TraesCS5A01G183000 chr7D 78.077 967 168 23 680 1621 312571678 312572625 2.590000e-159 571.0
15 TraesCS5A01G183000 chr4D 79.027 925 174 13 685 1600 119238675 119237762 1.180000e-172 616.0
16 TraesCS5A01G183000 chr4D 91.111 45 0 3 1664 1705 177491851 177491808 8.970000e-05 58.4
17 TraesCS5A01G183000 chr3D 83.219 292 43 2 754 1040 254116134 254115844 1.770000e-66 263.0
18 TraesCS5A01G183000 chr3A 82.534 292 45 2 754 1040 335464425 335464715 3.830000e-63 252.0
19 TraesCS5A01G183000 chr3A 80.899 89 12 3 1619 1703 283111708 283111795 5.360000e-07 65.8
20 TraesCS5A01G183000 chr4A 90.123 81 7 1 1625 1705 235655437 235655358 1.140000e-18 104.0
21 TraesCS5A01G183000 chr4B 92.754 69 4 1 1637 1705 324978801 324978734 5.280000e-17 99.0
22 TraesCS5A01G183000 chr3B 82.022 89 11 4 1619 1703 317625902 317625989 1.150000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G183000 chr5A 382545593 382547916 2323 True 4292.0 4292 100.0000 1 2324 1 chr5A.!!$R1 2323
1 TraesCS5A01G183000 chr5A 225601197 225602122 925 False 647.0 647 79.6830 444 1369 1 chr5A.!!$F1 925
2 TraesCS5A01G183000 chr5B 330745219 330747097 1878 True 1098.5 1964 90.1965 448 2323 2 chr5B.!!$R2 1875
3 TraesCS5A01G183000 chr5B 212395842 212396946 1104 True 896.0 896 81.5770 504 1617 1 chr5B.!!$R1 1113
4 TraesCS5A01G183000 chr5D 201664653 201665774 1121 True 902.0 902 81.5630 504 1617 1 chr5D.!!$R1 1113
5 TraesCS5A01G183000 chr5D 290053962 290054891 929 True 563.0 885 92.3285 1513 2323 2 chr5D.!!$R2 810
6 TraesCS5A01G183000 chr6B 291774020 291775188 1168 True 791.0 791 79.5020 448 1616 1 chr6B.!!$R1 1168
7 TraesCS5A01G183000 chr6B 409291952 409293698 1746 True 447.8 804 86.8270 688 1684 2 chr6B.!!$R2 996
8 TraesCS5A01G183000 chr2A 190316013 190316929 916 True 704.0 704 80.7410 685 1621 1 chr2A.!!$R1 936
9 TraesCS5A01G183000 chr2D 177458256 177459082 826 True 623.0 623 80.5160 778 1621 1 chr2D.!!$R1 843
10 TraesCS5A01G183000 chr7D 351590071 351590940 869 True 617.0 617 79.6880 685 1574 1 chr7D.!!$R1 889
11 TraesCS5A01G183000 chr7D 312571678 312572625 947 False 571.0 571 78.0770 680 1621 1 chr7D.!!$F1 941
12 TraesCS5A01G183000 chr4D 119237762 119238675 913 True 616.0 616 79.0270 685 1600 1 chr4D.!!$R1 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.033781 CCAGGTTTGCATGGGTGTTG 59.966 55.0 0.0 0.0 42.42 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 1530 0.103937 GGAGAATCGGAGAGGCACAG 59.896 60.0 0.0 0.0 43.63 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.671831 TGAGCCAACCATAAATCTTGGAA 58.328 39.130 0.00 0.00 37.25 3.53
23 24 4.462483 TGAGCCAACCATAAATCTTGGAAC 59.538 41.667 0.00 0.00 37.25 3.62
24 25 3.769300 AGCCAACCATAAATCTTGGAACC 59.231 43.478 0.00 0.00 37.25 3.62
26 27 4.222810 GCCAACCATAAATCTTGGAACCTT 59.777 41.667 0.00 0.00 37.25 3.50
27 28 5.723295 CCAACCATAAATCTTGGAACCTTG 58.277 41.667 0.00 0.00 37.25 3.61
28 29 5.337491 CCAACCATAAATCTTGGAACCTTGG 60.337 44.000 0.00 0.00 37.25 3.61
30 31 3.706086 CCATAAATCTTGGAACCTTGGGG 59.294 47.826 0.00 0.00 36.26 4.96
31 32 7.253149 ACCATAAATCTTGGAACCTTGGGGT 62.253 44.000 0.00 0.00 41.66 4.95
33 34 0.409484 ATCTTGGAACCTTGGGGTGG 59.591 55.000 0.00 0.00 46.67 4.61
35 36 0.774908 CTTGGAACCTTGGGGTGGTA 59.225 55.000 0.00 0.00 46.67 3.25
36 37 0.774908 TTGGAACCTTGGGGTGGTAG 59.225 55.000 0.00 0.00 46.67 3.18
37 38 0.104356 TGGAACCTTGGGGTGGTAGA 60.104 55.000 0.00 0.00 46.67 2.59
38 39 0.618981 GGAACCTTGGGGTGGTAGAG 59.381 60.000 0.00 0.00 46.67 2.43
39 40 1.652947 GAACCTTGGGGTGGTAGAGA 58.347 55.000 0.00 0.00 46.67 3.10
40 41 1.555533 GAACCTTGGGGTGGTAGAGAG 59.444 57.143 0.00 0.00 46.67 3.20
42 43 1.196012 CCTTGGGGTGGTAGAGAGTC 58.804 60.000 0.00 0.00 0.00 3.36
43 44 1.196012 CTTGGGGTGGTAGAGAGTCC 58.804 60.000 0.00 0.00 0.00 3.85
44 45 0.490017 TTGGGGTGGTAGAGAGTCCA 59.510 55.000 0.00 0.00 0.00 4.02
45 46 0.490017 TGGGGTGGTAGAGAGTCCAA 59.510 55.000 0.00 0.00 35.38 3.53
46 47 1.196012 GGGGTGGTAGAGAGTCCAAG 58.804 60.000 0.00 0.00 35.38 3.61
47 48 1.552719 GGGGTGGTAGAGAGTCCAAGT 60.553 57.143 0.00 0.00 35.38 3.16
49 50 2.028020 GGGTGGTAGAGAGTCCAAGTTG 60.028 54.545 0.00 0.00 35.38 3.16
50 51 2.028020 GGTGGTAGAGAGTCCAAGTTGG 60.028 54.545 16.36 16.36 39.43 3.77
51 52 2.897969 GTGGTAGAGAGTCCAAGTTGGA 59.102 50.000 21.05 21.05 45.98 3.53
62 63 2.445145 TCCAAGTTGGACCCAAATCTGA 59.555 45.455 21.05 0.46 42.67 3.27
63 64 2.821969 CCAAGTTGGACCCAAATCTGAG 59.178 50.000 17.60 0.00 40.96 3.35
64 65 2.206576 AGTTGGACCCAAATCTGAGC 57.793 50.000 2.62 0.00 37.70 4.26
66 67 1.815003 GTTGGACCCAAATCTGAGCTG 59.185 52.381 2.62 0.00 37.70 4.24
67 68 1.067295 TGGACCCAAATCTGAGCTGT 58.933 50.000 0.00 0.00 0.00 4.40
68 69 2.265367 TGGACCCAAATCTGAGCTGTA 58.735 47.619 0.00 0.00 0.00 2.74
69 70 2.846206 TGGACCCAAATCTGAGCTGTAT 59.154 45.455 0.00 0.00 0.00 2.29
70 71 3.209410 GGACCCAAATCTGAGCTGTATG 58.791 50.000 0.00 0.00 0.00 2.39
71 72 2.615912 GACCCAAATCTGAGCTGTATGC 59.384 50.000 0.00 0.00 43.29 3.14
88 89 2.879907 CGGGCAGCCAATGAACAG 59.120 61.111 15.19 0.00 0.00 3.16
89 90 2.703798 CGGGCAGCCAATGAACAGG 61.704 63.158 15.19 0.00 0.00 4.00
90 91 1.607467 GGGCAGCCAATGAACAGGT 60.607 57.895 15.19 0.00 0.00 4.00
91 92 1.588082 GGCAGCCAATGAACAGGTG 59.412 57.895 6.55 0.00 0.00 4.00
92 93 1.588082 GCAGCCAATGAACAGGTGG 59.412 57.895 0.00 0.00 35.39 4.61
95 96 4.850193 CCAATGAACAGGTGGCCT 57.150 55.556 3.32 0.00 0.00 5.19
104 105 1.451504 CAGGTGGCCTGTGTCTTCA 59.548 57.895 3.32 0.00 45.82 3.02
106 107 0.764369 AGGTGGCCTGTGTCTTCAGA 60.764 55.000 3.32 0.00 37.61 3.27
112 113 1.298014 CTGTGTCTTCAGAGGGGCC 59.702 63.158 0.00 0.00 37.61 5.80
113 114 1.461268 TGTGTCTTCAGAGGGGCCA 60.461 57.895 4.39 0.00 0.00 5.36
114 115 1.298014 GTGTCTTCAGAGGGGCCAG 59.702 63.158 4.39 0.00 0.00 4.85
115 116 2.270527 GTCTTCAGAGGGGCCAGC 59.729 66.667 4.39 0.00 0.00 4.85
118 119 2.853542 TTCAGAGGGGCCAGCACA 60.854 61.111 4.39 0.00 0.00 4.57
119 120 2.207501 CTTCAGAGGGGCCAGCACAT 62.208 60.000 4.39 0.00 0.00 3.21
120 121 2.124403 CAGAGGGGCCAGCACATC 60.124 66.667 4.39 0.00 0.00 3.06
121 122 3.790437 AGAGGGGCCAGCACATCG 61.790 66.667 4.39 0.00 35.05 3.84
122 123 4.101448 GAGGGGCCAGCACATCGT 62.101 66.667 4.39 0.00 0.00 3.73
132 133 2.124983 CACATCGTGGGCAGGAGG 60.125 66.667 0.00 0.00 33.80 4.30
138 139 3.480133 GTGGGCAGGAGGCGGTAT 61.480 66.667 0.00 0.00 46.16 2.73
153 154 2.024176 GGTATCCGACATGTGCTTGT 57.976 50.000 1.15 0.00 0.00 3.16
154 155 3.173668 GGTATCCGACATGTGCTTGTA 57.826 47.619 1.15 0.00 0.00 2.41
155 156 3.527533 GGTATCCGACATGTGCTTGTAA 58.472 45.455 1.15 0.00 0.00 2.41
166 167 3.496898 GCTTGTAAGCCAGGTTTGC 57.503 52.632 5.30 0.00 46.20 3.68
167 168 0.673437 GCTTGTAAGCCAGGTTTGCA 59.327 50.000 2.52 2.52 46.20 4.08
168 169 1.273327 GCTTGTAAGCCAGGTTTGCAT 59.727 47.619 7.64 0.00 46.20 3.96
169 170 2.927871 GCTTGTAAGCCAGGTTTGCATG 60.928 50.000 7.64 10.87 46.20 4.06
171 172 0.532115 GTAAGCCAGGTTTGCATGGG 59.468 55.000 6.21 0.00 45.92 4.00
174 175 2.209315 GCCAGGTTTGCATGGGTGT 61.209 57.895 6.21 0.00 45.92 4.16
175 176 1.757423 GCCAGGTTTGCATGGGTGTT 61.757 55.000 6.21 0.00 45.92 3.32
176 177 0.033781 CCAGGTTTGCATGGGTGTTG 59.966 55.000 0.00 0.00 42.42 3.33
177 178 1.039068 CAGGTTTGCATGGGTGTTGA 58.961 50.000 0.00 0.00 0.00 3.18
178 179 1.000060 CAGGTTTGCATGGGTGTTGAG 60.000 52.381 0.00 0.00 0.00 3.02
179 180 0.318120 GGTTTGCATGGGTGTTGAGG 59.682 55.000 0.00 0.00 0.00 3.86
181 182 1.804396 TTTGCATGGGTGTTGAGGCG 61.804 55.000 0.00 0.00 0.00 5.52
182 183 4.120331 GCATGGGTGTTGAGGCGC 62.120 66.667 0.00 0.00 0.00 6.53
198 199 4.700365 GCCCGCGAAACAACAGCC 62.700 66.667 8.23 0.00 0.00 4.85
199 200 3.283684 CCCGCGAAACAACAGCCA 61.284 61.111 8.23 0.00 0.00 4.75
200 201 2.718731 CCGCGAAACAACAGCCAA 59.281 55.556 8.23 0.00 0.00 4.52
201 202 1.370414 CCGCGAAACAACAGCCAAG 60.370 57.895 8.23 0.00 0.00 3.61
202 203 2.010817 CGCGAAACAACAGCCAAGC 61.011 57.895 0.00 0.00 0.00 4.01
203 204 1.065600 GCGAAACAACAGCCAAGCA 59.934 52.632 0.00 0.00 0.00 3.91
204 205 0.527385 GCGAAACAACAGCCAAGCAA 60.527 50.000 0.00 0.00 0.00 3.91
206 207 1.587946 CGAAACAACAGCCAAGCAAAC 59.412 47.619 0.00 0.00 0.00 2.93
207 208 2.615869 GAAACAACAGCCAAGCAAACA 58.384 42.857 0.00 0.00 0.00 2.83
208 209 2.298411 AACAACAGCCAAGCAAACAG 57.702 45.000 0.00 0.00 0.00 3.16
209 210 1.185315 ACAACAGCCAAGCAAACAGT 58.815 45.000 0.00 0.00 0.00 3.55
212 213 2.298411 ACAGCCAAGCAAACAGTTTG 57.702 45.000 20.10 20.10 43.44 2.93
213 214 1.824230 ACAGCCAAGCAAACAGTTTGA 59.176 42.857 27.16 0.00 43.26 2.69
215 216 2.798283 CAGCCAAGCAAACAGTTTGATG 59.202 45.455 27.16 22.20 43.26 3.07
216 217 2.694628 AGCCAAGCAAACAGTTTGATGA 59.305 40.909 27.16 0.00 43.26 2.92
217 218 3.322828 AGCCAAGCAAACAGTTTGATGAT 59.677 39.130 27.16 8.23 43.26 2.45
218 219 3.676646 GCCAAGCAAACAGTTTGATGATC 59.323 43.478 27.16 15.36 43.26 2.92
221 222 5.404366 CCAAGCAAACAGTTTGATGATCTTG 59.596 40.000 27.16 24.86 43.26 3.02
222 223 5.779529 AGCAAACAGTTTGATGATCTTGT 57.220 34.783 27.16 0.00 43.26 3.16
223 224 5.766222 AGCAAACAGTTTGATGATCTTGTC 58.234 37.500 27.16 7.39 43.26 3.18
224 225 4.919754 GCAAACAGTTTGATGATCTTGTCC 59.080 41.667 27.16 3.57 43.26 4.02
225 226 5.149273 CAAACAGTTTGATGATCTTGTCCG 58.851 41.667 19.79 0.00 43.26 4.79
226 227 3.338249 ACAGTTTGATGATCTTGTCCGG 58.662 45.455 0.00 0.00 0.00 5.14
227 228 2.679837 CAGTTTGATGATCTTGTCCGGG 59.320 50.000 0.00 0.00 0.00 5.73
228 229 2.017049 GTTTGATGATCTTGTCCGGGG 58.983 52.381 0.00 0.00 0.00 5.73
229 230 0.107214 TTGATGATCTTGTCCGGGGC 60.107 55.000 0.00 0.00 0.00 5.80
230 231 0.982852 TGATGATCTTGTCCGGGGCT 60.983 55.000 0.00 0.00 0.00 5.19
231 232 0.250081 GATGATCTTGTCCGGGGCTC 60.250 60.000 0.00 0.00 0.00 4.70
232 233 2.032860 ATGATCTTGTCCGGGGCTCG 62.033 60.000 0.00 0.00 38.88 5.03
243 244 4.779733 GGGCTCGGGACCTCCAGA 62.780 72.222 0.00 0.00 37.73 3.86
244 245 2.444895 GGCTCGGGACCTCCAGAT 60.445 66.667 0.00 0.00 39.43 2.90
245 246 2.066999 GGCTCGGGACCTCCAGATT 61.067 63.158 0.00 0.00 39.43 2.40
246 247 0.759436 GGCTCGGGACCTCCAGATTA 60.759 60.000 0.00 0.00 39.43 1.75
247 248 1.120530 GCTCGGGACCTCCAGATTAA 58.879 55.000 0.00 0.00 39.43 1.40
248 249 1.485066 GCTCGGGACCTCCAGATTAAA 59.515 52.381 0.00 0.00 39.43 1.52
249 250 2.104963 GCTCGGGACCTCCAGATTAAAT 59.895 50.000 0.00 0.00 39.43 1.40
250 251 3.804063 GCTCGGGACCTCCAGATTAAATC 60.804 52.174 0.00 0.00 39.43 2.17
252 253 3.388024 TCGGGACCTCCAGATTAAATCAG 59.612 47.826 0.00 0.00 35.30 2.90
253 254 3.481453 GGGACCTCCAGATTAAATCAGC 58.519 50.000 0.00 0.00 37.91 4.26
254 255 3.134458 GGACCTCCAGATTAAATCAGCG 58.866 50.000 0.00 0.00 35.64 5.18
255 256 3.432326 GGACCTCCAGATTAAATCAGCGT 60.432 47.826 0.00 0.00 35.64 5.07
256 257 3.535561 ACCTCCAGATTAAATCAGCGTG 58.464 45.455 0.00 0.00 0.00 5.34
257 258 2.874701 CCTCCAGATTAAATCAGCGTGG 59.125 50.000 0.00 0.00 0.00 4.94
258 259 3.535561 CTCCAGATTAAATCAGCGTGGT 58.464 45.455 0.00 0.00 0.00 4.16
259 260 3.531538 TCCAGATTAAATCAGCGTGGTC 58.468 45.455 0.00 0.00 0.00 4.02
261 262 3.879295 CCAGATTAAATCAGCGTGGTCAT 59.121 43.478 0.00 0.00 0.00 3.06
262 263 4.024556 CCAGATTAAATCAGCGTGGTCATC 60.025 45.833 0.00 0.00 0.00 2.92
263 264 4.024556 CAGATTAAATCAGCGTGGTCATCC 60.025 45.833 0.00 0.00 0.00 3.51
264 265 3.627395 TTAAATCAGCGTGGTCATCCT 57.373 42.857 0.00 0.00 34.23 3.24
265 266 2.029838 AAATCAGCGTGGTCATCCTC 57.970 50.000 0.00 0.00 34.23 3.71
274 275 3.363341 GTGGTCATCCTCGAGATCTTC 57.637 52.381 15.71 1.21 30.59 2.87
276 277 3.320541 GTGGTCATCCTCGAGATCTTCAT 59.679 47.826 15.71 0.00 30.59 2.57
277 278 3.320256 TGGTCATCCTCGAGATCTTCATG 59.680 47.826 15.71 6.12 30.59 3.07
278 279 3.320541 GGTCATCCTCGAGATCTTCATGT 59.679 47.826 15.71 0.00 30.59 3.21
279 280 4.520874 GGTCATCCTCGAGATCTTCATGTA 59.479 45.833 15.71 0.00 30.59 2.29
280 281 5.335583 GGTCATCCTCGAGATCTTCATGTAG 60.336 48.000 15.71 0.00 30.59 2.74
281 282 4.217334 TCATCCTCGAGATCTTCATGTAGC 59.783 45.833 15.71 0.00 30.59 3.58
282 283 3.555966 TCCTCGAGATCTTCATGTAGCA 58.444 45.455 15.71 0.00 0.00 3.49
283 284 4.148079 TCCTCGAGATCTTCATGTAGCAT 58.852 43.478 15.71 0.00 0.00 3.79
285 286 5.770162 TCCTCGAGATCTTCATGTAGCATAA 59.230 40.000 15.71 0.00 0.00 1.90
286 287 6.435591 TCCTCGAGATCTTCATGTAGCATAAT 59.564 38.462 15.71 0.00 0.00 1.28
287 288 6.751425 CCTCGAGATCTTCATGTAGCATAATC 59.249 42.308 15.71 0.00 0.00 1.75
288 289 7.362834 CCTCGAGATCTTCATGTAGCATAATCT 60.363 40.741 15.71 2.22 0.00 2.40
289 290 7.890515 TCGAGATCTTCATGTAGCATAATCTT 58.109 34.615 0.00 0.00 0.00 2.40
290 291 9.014297 TCGAGATCTTCATGTAGCATAATCTTA 57.986 33.333 0.00 0.00 0.00 2.10
291 292 9.800433 CGAGATCTTCATGTAGCATAATCTTAT 57.200 33.333 0.00 0.00 0.00 1.73
298 299 9.440773 TTCATGTAGCATAATCTTATAAGCAGG 57.559 33.333 7.67 0.00 0.00 4.85
299 300 7.550551 TCATGTAGCATAATCTTATAAGCAGGC 59.449 37.037 7.67 8.48 0.00 4.85
300 301 7.009179 TGTAGCATAATCTTATAAGCAGGCT 57.991 36.000 18.22 18.22 0.00 4.58
301 302 7.453393 TGTAGCATAATCTTATAAGCAGGCTT 58.547 34.615 18.92 11.70 39.83 4.35
307 308 5.636903 ATCTTATAAGCAGGCTTTGGAGA 57.363 39.130 12.27 12.23 37.47 3.71
308 309 5.028549 TCTTATAAGCAGGCTTTGGAGAG 57.971 43.478 12.27 4.47 37.47 3.20
309 310 4.471386 TCTTATAAGCAGGCTTTGGAGAGT 59.529 41.667 12.27 0.00 37.47 3.24
310 311 5.661312 TCTTATAAGCAGGCTTTGGAGAGTA 59.339 40.000 12.27 0.00 37.47 2.59
311 312 2.481289 AAGCAGGCTTTGGAGAGTAC 57.519 50.000 0.00 0.00 31.29 2.73
312 313 1.650528 AGCAGGCTTTGGAGAGTACT 58.349 50.000 0.00 0.00 0.00 2.73
313 314 1.981495 AGCAGGCTTTGGAGAGTACTT 59.019 47.619 0.00 0.00 0.00 2.24
316 317 3.594134 CAGGCTTTGGAGAGTACTTCAG 58.406 50.000 0.00 0.00 32.72 3.02
317 318 3.007398 CAGGCTTTGGAGAGTACTTCAGT 59.993 47.826 0.00 0.00 32.72 3.41
318 319 3.259625 AGGCTTTGGAGAGTACTTCAGTC 59.740 47.826 0.00 0.00 32.72 3.51
321 322 4.323104 GCTTTGGAGAGTACTTCAGTCCAT 60.323 45.833 14.48 0.00 37.16 3.41
322 323 4.808414 TTGGAGAGTACTTCAGTCCATG 57.192 45.455 14.48 0.00 37.16 3.66
326 327 2.763448 AGAGTACTTCAGTCCATGGAGC 59.237 50.000 16.81 10.43 38.20 4.70
327 328 2.497675 GAGTACTTCAGTCCATGGAGCA 59.502 50.000 16.81 0.00 38.20 4.26
328 329 2.906389 AGTACTTCAGTCCATGGAGCAA 59.094 45.455 16.81 7.22 38.20 3.91
329 330 2.486472 ACTTCAGTCCATGGAGCAAG 57.514 50.000 16.81 18.43 38.20 4.01
330 331 1.980765 ACTTCAGTCCATGGAGCAAGA 59.019 47.619 24.57 14.70 38.20 3.02
331 332 2.373169 ACTTCAGTCCATGGAGCAAGAA 59.627 45.455 24.57 19.33 38.20 2.52
332 333 2.479566 TCAGTCCATGGAGCAAGAAC 57.520 50.000 16.81 1.41 0.00 3.01
334 335 0.036010 AGTCCATGGAGCAAGAACCG 60.036 55.000 16.81 0.00 0.00 4.44
335 336 1.377202 TCCATGGAGCAAGAACCGC 60.377 57.895 11.44 0.00 0.00 5.68
336 337 1.377725 CCATGGAGCAAGAACCGCT 60.378 57.895 5.56 0.00 44.10 5.52
341 342 2.048127 AGCAAGAACCGCTCGTCC 60.048 61.111 0.00 0.00 33.35 4.79
342 343 2.048127 GCAAGAACCGCTCGTCCT 60.048 61.111 0.00 0.00 0.00 3.85
343 344 2.383527 GCAAGAACCGCTCGTCCTG 61.384 63.158 0.00 0.00 0.00 3.86
346 347 2.126031 GAACCGCTCGTCCTGTCC 60.126 66.667 0.00 0.00 0.00 4.02
347 348 2.915659 AACCGCTCGTCCTGTCCA 60.916 61.111 0.00 0.00 0.00 4.02
348 349 2.227089 GAACCGCTCGTCCTGTCCAT 62.227 60.000 0.00 0.00 0.00 3.41
349 350 2.105128 CCGCTCGTCCTGTCCATC 59.895 66.667 0.00 0.00 0.00 3.51
350 351 2.105128 CGCTCGTCCTGTCCATCC 59.895 66.667 0.00 0.00 0.00 3.51
352 353 2.711922 GCTCGTCCTGTCCATCCGT 61.712 63.158 0.00 0.00 0.00 4.69
353 354 1.139734 CTCGTCCTGTCCATCCGTG 59.860 63.158 0.00 0.00 0.00 4.94
354 355 1.303806 TCGTCCTGTCCATCCGTGA 60.304 57.895 0.00 0.00 0.00 4.35
357 358 0.608640 GTCCTGTCCATCCGTGAGTT 59.391 55.000 0.00 0.00 0.00 3.01
358 359 0.608130 TCCTGTCCATCCGTGAGTTG 59.392 55.000 0.00 0.00 0.00 3.16
359 360 0.391661 CCTGTCCATCCGTGAGTTGG 60.392 60.000 0.00 0.00 34.72 3.77
360 361 0.608130 CTGTCCATCCGTGAGTTGGA 59.392 55.000 0.00 0.00 38.64 3.53
362 363 1.207089 TGTCCATCCGTGAGTTGGATC 59.793 52.381 0.00 0.00 44.41 3.36
363 364 1.482593 GTCCATCCGTGAGTTGGATCT 59.517 52.381 0.00 0.00 44.41 2.75
364 365 1.757118 TCCATCCGTGAGTTGGATCTC 59.243 52.381 0.00 0.00 44.41 2.75
366 367 1.759445 CATCCGTGAGTTGGATCTCCT 59.241 52.381 0.00 0.00 44.41 3.69
367 368 1.186200 TCCGTGAGTTGGATCTCCTG 58.814 55.000 0.00 0.00 36.82 3.86
368 369 0.176680 CCGTGAGTTGGATCTCCTGG 59.823 60.000 0.00 0.00 36.82 4.45
369 370 1.186200 CGTGAGTTGGATCTCCTGGA 58.814 55.000 0.00 0.00 36.82 3.86
370 371 1.759445 CGTGAGTTGGATCTCCTGGAT 59.241 52.381 0.00 0.00 37.37 3.41
371 372 2.169352 CGTGAGTTGGATCTCCTGGATT 59.831 50.000 0.00 0.00 34.33 3.01
372 373 3.369892 CGTGAGTTGGATCTCCTGGATTT 60.370 47.826 0.00 0.00 34.33 2.17
375 376 5.129485 GTGAGTTGGATCTCCTGGATTTCTA 59.871 44.000 0.00 0.00 34.33 2.10
376 377 5.129485 TGAGTTGGATCTCCTGGATTTCTAC 59.871 44.000 0.00 0.00 34.33 2.59
377 378 4.410555 AGTTGGATCTCCTGGATTTCTACC 59.589 45.833 0.00 0.00 34.33 3.18
378 379 4.286813 TGGATCTCCTGGATTTCTACCT 57.713 45.455 0.00 0.00 34.33 3.08
380 381 4.078336 TGGATCTCCTGGATTTCTACCTCT 60.078 45.833 0.00 0.00 34.33 3.69
381 382 4.526650 GGATCTCCTGGATTTCTACCTCTC 59.473 50.000 0.00 0.00 34.33 3.20
382 383 4.890499 TCTCCTGGATTTCTACCTCTCT 57.110 45.455 0.00 0.00 0.00 3.10
383 384 5.213868 TCTCCTGGATTTCTACCTCTCTT 57.786 43.478 0.00 0.00 0.00 2.85
384 385 5.594777 TCTCCTGGATTTCTACCTCTCTTT 58.405 41.667 0.00 0.00 0.00 2.52
385 386 5.423610 TCTCCTGGATTTCTACCTCTCTTTG 59.576 44.000 0.00 0.00 0.00 2.77
387 388 5.548056 TCCTGGATTTCTACCTCTCTTTGTT 59.452 40.000 0.00 0.00 0.00 2.83
388 389 5.645497 CCTGGATTTCTACCTCTCTTTGTTG 59.355 44.000 0.00 0.00 0.00 3.33
389 390 6.187727 TGGATTTCTACCTCTCTTTGTTGT 57.812 37.500 0.00 0.00 0.00 3.32
390 391 6.601332 TGGATTTCTACCTCTCTTTGTTGTT 58.399 36.000 0.00 0.00 0.00 2.83
393 394 3.390135 TCTACCTCTCTTTGTTGTTGCG 58.610 45.455 0.00 0.00 0.00 4.85
394 395 1.308998 ACCTCTCTTTGTTGTTGCGG 58.691 50.000 0.00 0.00 0.00 5.69
395 396 0.593128 CCTCTCTTTGTTGTTGCGGG 59.407 55.000 0.00 0.00 0.00 6.13
396 397 1.593196 CTCTCTTTGTTGTTGCGGGA 58.407 50.000 0.00 0.00 0.00 5.14
398 399 1.134220 TCTCTTTGTTGTTGCGGGACT 60.134 47.619 0.00 0.00 0.00 3.85
399 400 1.676006 CTCTTTGTTGTTGCGGGACTT 59.324 47.619 0.00 0.00 0.00 3.01
403 404 0.394488 TGTTGTTGCGGGACTTCCAA 60.394 50.000 0.00 0.00 37.91 3.53
407 408 0.534203 GTTGCGGGACTTCCAACTCA 60.534 55.000 0.00 0.00 36.73 3.41
408 409 0.400213 TTGCGGGACTTCCAACTCAT 59.600 50.000 0.00 0.00 37.91 2.90
421 422 3.912496 CAACTCATGGATGGACAGGTA 57.088 47.619 0.00 0.00 0.00 3.08
422 423 3.801698 CAACTCATGGATGGACAGGTAG 58.198 50.000 0.00 0.00 0.00 3.18
423 424 2.402564 ACTCATGGATGGACAGGTAGG 58.597 52.381 0.00 0.00 0.00 3.18
424 425 1.071385 CTCATGGATGGACAGGTAGGC 59.929 57.143 0.00 0.00 0.00 3.93
425 426 0.250038 CATGGATGGACAGGTAGGCG 60.250 60.000 0.00 0.00 0.00 5.52
426 427 1.410850 ATGGATGGACAGGTAGGCGG 61.411 60.000 0.00 0.00 0.00 6.13
427 428 2.109181 GATGGACAGGTAGGCGGC 59.891 66.667 0.00 0.00 0.00 6.53
428 429 3.792053 GATGGACAGGTAGGCGGCG 62.792 68.421 0.51 0.51 0.00 6.46
430 431 3.766691 GGACAGGTAGGCGGCGAA 61.767 66.667 12.98 0.00 0.00 4.70
431 432 2.202756 GACAGGTAGGCGGCGAAG 60.203 66.667 12.98 0.00 0.00 3.79
432 433 3.718210 GACAGGTAGGCGGCGAAGG 62.718 68.421 12.98 0.00 0.00 3.46
483 489 2.897350 GCCTACCTGCCATCGCAC 60.897 66.667 0.00 0.00 41.12 5.34
517 525 0.251341 GATTCCTGCCAACCACCACT 60.251 55.000 0.00 0.00 0.00 4.00
538 546 1.613061 CCGCCATCCCCCTTTTACT 59.387 57.895 0.00 0.00 0.00 2.24
563 571 0.749649 CAGCCATCTCCTTACTCGCT 59.250 55.000 0.00 0.00 0.00 4.93
581 589 1.066143 GCTGCAGCTACTCCCTAACAA 60.066 52.381 31.33 0.00 38.21 2.83
598 606 1.145738 ACAACAATCTGGGCCACTTCT 59.854 47.619 0.00 0.00 0.00 2.85
602 610 1.067295 AATCTGGGCCACTTCTCACA 58.933 50.000 0.00 0.00 0.00 3.58
608 616 1.148273 GCCACTTCTCACACCCACA 59.852 57.895 0.00 0.00 0.00 4.17
609 617 0.250901 GCCACTTCTCACACCCACAT 60.251 55.000 0.00 0.00 0.00 3.21
613 621 3.244561 CCACTTCTCACACCCACATTACT 60.245 47.826 0.00 0.00 0.00 2.24
628 636 4.881850 CACATTACTACTCAAATCCCACCC 59.118 45.833 0.00 0.00 0.00 4.61
650 658 3.244840 CCAAATCCCTTCCAATTTTGCCA 60.245 43.478 0.00 0.00 0.00 4.92
651 659 4.568169 CCAAATCCCTTCCAATTTTGCCAT 60.568 41.667 0.00 0.00 0.00 4.40
736 879 0.859232 CATACGTCGTTATGGCAGCC 59.141 55.000 3.66 3.66 0.00 4.85
737 880 0.750850 ATACGTCGTTATGGCAGCCT 59.249 50.000 14.15 0.35 0.00 4.58
742 885 0.323302 TCGTTATGGCAGCCTTCACA 59.677 50.000 14.15 0.00 0.00 3.58
744 887 1.675714 CGTTATGGCAGCCTTCACAGA 60.676 52.381 14.15 0.00 0.00 3.41
750 893 1.233285 GCAGCCTTCACAGACCACAG 61.233 60.000 0.00 0.00 0.00 3.66
752 895 2.320587 GCCTTCACAGACCACAGCG 61.321 63.158 0.00 0.00 0.00 5.18
770 913 0.979665 CGCATCTATGGATCCACCCT 59.020 55.000 18.99 3.68 38.00 4.34
791 934 1.565390 CCCATCACCTCCCTTCTGCA 61.565 60.000 0.00 0.00 0.00 4.41
911 1063 3.724494 GCTCAATAGGTGCGAGCC 58.276 61.111 0.00 0.00 45.14 4.70
912 1064 1.153369 GCTCAATAGGTGCGAGCCA 60.153 57.895 0.00 0.00 45.14 4.75
913 1065 1.156645 GCTCAATAGGTGCGAGCCAG 61.157 60.000 0.00 0.00 45.14 4.85
943 1095 1.067142 GGACAACACATAGACGAGGCA 60.067 52.381 0.00 0.00 0.00 4.75
944 1096 2.611971 GGACAACACATAGACGAGGCAA 60.612 50.000 0.00 0.00 0.00 4.52
949 1101 2.806244 ACACATAGACGAGGCAAACAAC 59.194 45.455 0.00 0.00 0.00 3.32
950 1102 2.805671 CACATAGACGAGGCAAACAACA 59.194 45.455 0.00 0.00 0.00 3.33
989 1143 3.409026 ACCTCACCAATGACTCTCAAC 57.591 47.619 0.00 0.00 0.00 3.18
1001 1160 8.908903 CCAATGACTCTCAACTCTAGTACTTAT 58.091 37.037 0.00 0.00 0.00 1.73
1024 1188 1.587088 GCGATTTTGGCATGCCGAG 60.587 57.895 30.87 18.19 39.42 4.63
1136 1302 2.553028 CCTTGGTTGCAGACTACACCAT 60.553 50.000 6.52 0.00 0.00 3.55
1233 1409 0.462581 TGCCTGATGGTCTTCGCATC 60.463 55.000 0.00 0.00 35.27 3.91
1251 1427 1.439858 CGACGTCGAGCTTCAACGA 60.440 57.895 33.35 7.24 43.02 3.85
1322 1498 0.523072 CATTTCCCTCCAACAGCGTG 59.477 55.000 0.00 0.00 0.00 5.34
1351 1527 2.377136 CCTTCTGGGCCTACAGTGT 58.623 57.895 4.53 0.00 39.48 3.55
1354 1530 1.198759 TTCTGGGCCTACAGTGTCCC 61.199 60.000 10.92 10.92 39.48 4.46
1383 1559 1.089920 CCGATTCTCCTGTTGCCAAG 58.910 55.000 0.00 0.00 0.00 3.61
1409 1585 0.625849 ACAATACCTTCCCTGCCAGG 59.374 55.000 2.91 2.91 36.10 4.45
1436 1612 5.239744 CACTAGCACCTATTCTGTAGTCGAT 59.760 44.000 0.00 0.00 0.00 3.59
1437 1613 5.828859 ACTAGCACCTATTCTGTAGTCGATT 59.171 40.000 0.00 0.00 0.00 3.34
1444 1620 7.005296 ACCTATTCTGTAGTCGATTACTCCAT 58.995 38.462 17.63 9.63 39.80 3.41
1456 1632 1.052124 TACTCCATAGCCAACCCCGG 61.052 60.000 0.00 0.00 0.00 5.73
1504 1681 1.890510 GGGTTGGCAGAACGTCGTT 60.891 57.895 11.08 11.08 0.00 3.85
1511 1688 1.300620 CAGAACGTCGTTGCCAGGA 60.301 57.895 16.75 0.00 0.00 3.86
1629 1806 1.273838 ACTGGTAGCCCCTCTCAATGA 60.274 52.381 0.00 0.00 0.00 2.57
1645 1822 7.385752 CCTCTCAATGAAGCAGAGAAGAATATC 59.614 40.741 0.00 0.00 37.90 1.63
1703 1881 6.778559 GGGTTATGTCAGTAGTAGATCCTTCT 59.221 42.308 0.00 0.00 35.90 2.85
1800 1979 0.243907 TCGAGCTTTCTCCACGAAGG 59.756 55.000 0.00 0.00 35.94 3.46
1811 1990 1.374252 CACGAAGGGGAAGTGGTCG 60.374 63.158 0.00 0.00 37.71 4.79
1829 2008 5.972973 GTGGTCGTAACATCGTATGTGATAA 59.027 40.000 2.00 0.00 44.07 1.75
1864 2045 1.278127 ACTACACCATTCTGTTCCCCG 59.722 52.381 0.00 0.00 0.00 5.73
1882 2063 3.393800 CCCGCTCATTCTTTATCACGAT 58.606 45.455 0.00 0.00 0.00 3.73
1892 2073 8.873830 TCATTCTTTATCACGATTGTTCTCTTC 58.126 33.333 0.00 0.00 0.00 2.87
1893 2074 8.659491 CATTCTTTATCACGATTGTTCTCTTCA 58.341 33.333 0.00 0.00 0.00 3.02
1897 2078 7.905604 TTATCACGATTGTTCTCTTCACATT 57.094 32.000 0.00 0.00 0.00 2.71
1963 2144 9.823647 TGGAGTTTTGTATCTATCTTCTGAATC 57.176 33.333 0.00 0.00 0.00 2.52
1987 2168 7.282585 TCTTGATACTATATGCAAGGCTGTTT 58.717 34.615 0.00 0.00 38.53 2.83
2111 2292 1.484653 TCTTACGGCATGCCTGTGTAT 59.515 47.619 33.07 14.17 0.00 2.29
2164 2473 9.543783 CTACTTTGGTATAAAGGTCTGGTATTC 57.456 37.037 4.64 0.00 0.00 1.75
2178 2487 4.777896 TCTGGTATTCTGCACCTCTAAAGT 59.222 41.667 0.00 0.00 36.96 2.66
2182 2491 5.816258 GGTATTCTGCACCTCTAAAGTTACC 59.184 44.000 0.00 0.00 32.98 2.85
2255 2564 3.173965 TGTACCTAAGCAGCCTTCTCTT 58.826 45.455 0.00 0.00 32.47 2.85
2256 2565 3.583086 TGTACCTAAGCAGCCTTCTCTTT 59.417 43.478 0.00 0.00 32.47 2.52
2257 2566 3.797559 ACCTAAGCAGCCTTCTCTTTT 57.202 42.857 0.00 0.00 32.47 2.27
2315 2625 7.068702 ATGGTGTTCATATGAATGGGTACATT 58.931 34.615 20.65 1.92 41.13 2.71
2323 2633 3.270027 TGAATGGGTACATTGAGAAGCG 58.730 45.455 0.00 0.00 46.89 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.314522 TCCAAGATTTATGGTTGGCTCA 57.685 40.909 0.00 0.00 40.59 4.26
1 2 4.142160 GGTTCCAAGATTTATGGTTGGCTC 60.142 45.833 0.00 0.00 40.59 4.70
2 3 3.769300 GGTTCCAAGATTTATGGTTGGCT 59.231 43.478 0.00 0.00 40.59 4.75
3 4 3.769300 AGGTTCCAAGATTTATGGTTGGC 59.231 43.478 0.00 0.00 40.59 4.52
4 5 5.337491 CCAAGGTTCCAAGATTTATGGTTGG 60.337 44.000 0.00 0.00 41.92 3.77
6 7 4.777366 CCCAAGGTTCCAAGATTTATGGTT 59.223 41.667 0.00 0.00 39.09 3.67
7 8 4.352893 CCCAAGGTTCCAAGATTTATGGT 58.647 43.478 0.00 0.00 39.09 3.55
8 9 3.706086 CCCCAAGGTTCCAAGATTTATGG 59.294 47.826 0.00 0.00 39.41 2.74
23 24 1.196012 GACTCTCTACCACCCCAAGG 58.804 60.000 0.00 0.00 40.04 3.61
24 25 1.196012 GGACTCTCTACCACCCCAAG 58.804 60.000 0.00 0.00 0.00 3.61
26 27 0.490017 TTGGACTCTCTACCACCCCA 59.510 55.000 0.00 0.00 35.81 4.96
27 28 1.196012 CTTGGACTCTCTACCACCCC 58.804 60.000 0.00 0.00 35.81 4.95
28 29 1.939980 ACTTGGACTCTCTACCACCC 58.060 55.000 0.00 0.00 35.81 4.61
30 31 2.897969 TCCAACTTGGACTCTCTACCAC 59.102 50.000 6.39 0.00 42.67 4.16
31 32 3.254093 TCCAACTTGGACTCTCTACCA 57.746 47.619 6.39 0.00 42.67 3.25
42 43 2.821969 CTCAGATTTGGGTCCAACTTGG 59.178 50.000 1.33 0.74 39.43 3.61
43 44 2.229784 GCTCAGATTTGGGTCCAACTTG 59.770 50.000 1.33 2.16 35.46 3.16
44 45 2.108952 AGCTCAGATTTGGGTCCAACTT 59.891 45.455 1.33 0.00 35.46 2.66
45 46 1.707427 AGCTCAGATTTGGGTCCAACT 59.293 47.619 1.33 0.00 35.46 3.16
46 47 1.815003 CAGCTCAGATTTGGGTCCAAC 59.185 52.381 1.33 0.00 35.46 3.77
47 48 1.425066 ACAGCTCAGATTTGGGTCCAA 59.575 47.619 0.00 0.00 0.00 3.53
49 50 3.209410 CATACAGCTCAGATTTGGGTCC 58.791 50.000 0.00 0.00 0.00 4.46
50 51 2.615912 GCATACAGCTCAGATTTGGGTC 59.384 50.000 0.00 0.00 41.15 4.46
51 52 2.648059 GCATACAGCTCAGATTTGGGT 58.352 47.619 0.00 0.00 41.15 4.51
53 54 1.600957 CCGCATACAGCTCAGATTTGG 59.399 52.381 0.00 0.00 42.61 3.28
54 55 1.600957 CCCGCATACAGCTCAGATTTG 59.399 52.381 0.00 0.00 42.61 2.32
55 56 1.959042 CCCGCATACAGCTCAGATTT 58.041 50.000 0.00 0.00 42.61 2.17
59 60 1.886313 CTGCCCGCATACAGCTCAG 60.886 63.158 0.00 0.00 42.61 3.35
60 61 2.187685 CTGCCCGCATACAGCTCA 59.812 61.111 0.00 0.00 42.61 4.26
64 65 1.825191 ATTGGCTGCCCGCATACAG 60.825 57.895 17.53 0.00 41.67 2.74
66 67 1.383456 TTCATTGGCTGCCCGCATAC 61.383 55.000 17.53 0.00 41.67 2.39
67 68 1.077140 TTCATTGGCTGCCCGCATA 60.077 52.632 17.53 0.00 41.67 3.14
68 69 2.362760 TTCATTGGCTGCCCGCAT 60.363 55.556 17.53 2.55 41.67 4.73
69 70 3.372730 GTTCATTGGCTGCCCGCA 61.373 61.111 17.53 0.00 41.67 5.69
70 71 3.346631 CTGTTCATTGGCTGCCCGC 62.347 63.158 17.53 0.48 38.13 6.13
71 72 2.703798 CCTGTTCATTGGCTGCCCG 61.704 63.158 17.53 4.79 0.00 6.13
73 74 1.588082 CACCTGTTCATTGGCTGCC 59.412 57.895 12.87 12.87 0.00 4.85
74 75 1.588082 CCACCTGTTCATTGGCTGC 59.412 57.895 0.00 0.00 0.00 5.25
78 79 2.269978 CAGGCCACCTGTTCATTGG 58.730 57.895 5.01 0.00 45.82 3.16
88 89 0.321122 CTCTGAAGACACAGGCCACC 60.321 60.000 5.01 0.00 38.31 4.61
89 90 0.321122 CCTCTGAAGACACAGGCCAC 60.321 60.000 5.01 0.00 38.31 5.01
90 91 1.483595 CCCTCTGAAGACACAGGCCA 61.484 60.000 5.01 0.00 38.31 5.36
91 92 1.298014 CCCTCTGAAGACACAGGCC 59.702 63.158 0.00 0.00 38.31 5.19
92 93 1.298014 CCCCTCTGAAGACACAGGC 59.702 63.158 0.00 0.00 38.31 4.85
93 94 1.298014 GCCCCTCTGAAGACACAGG 59.702 63.158 0.00 0.00 38.31 4.00
94 95 1.298014 GGCCCCTCTGAAGACACAG 59.702 63.158 0.00 0.00 39.02 3.66
95 96 1.461268 TGGCCCCTCTGAAGACACA 60.461 57.895 0.00 0.00 0.00 3.72
97 98 2.596851 GCTGGCCCCTCTGAAGACA 61.597 63.158 0.00 0.00 0.00 3.41
99 100 2.203983 TGCTGGCCCCTCTGAAGA 60.204 61.111 0.00 0.00 0.00 2.87
100 101 2.045536 GTGCTGGCCCCTCTGAAG 60.046 66.667 0.00 0.00 0.00 3.02
101 102 2.202236 GATGTGCTGGCCCCTCTGAA 62.202 60.000 0.00 0.00 0.00 3.02
102 103 2.611800 ATGTGCTGGCCCCTCTGA 60.612 61.111 0.00 0.00 0.00 3.27
104 105 3.790437 CGATGTGCTGGCCCCTCT 61.790 66.667 0.00 0.00 0.00 3.69
106 107 4.415150 CACGATGTGCTGGCCCCT 62.415 66.667 0.00 0.00 0.00 4.79
111 112 3.129502 CTGCCCACGATGTGCTGG 61.130 66.667 0.00 0.00 31.34 4.85
112 113 3.129502 CCTGCCCACGATGTGCTG 61.130 66.667 0.00 0.00 31.34 4.41
113 114 3.320879 CTCCTGCCCACGATGTGCT 62.321 63.158 0.00 0.00 31.34 4.40
114 115 2.821366 CTCCTGCCCACGATGTGC 60.821 66.667 0.00 0.00 31.34 4.57
115 116 2.124983 CCTCCTGCCCACGATGTG 60.125 66.667 0.00 0.00 0.00 3.21
121 122 3.462199 GATACCGCCTCCTGCCCAC 62.462 68.421 0.00 0.00 36.24 4.61
122 123 3.161450 GATACCGCCTCCTGCCCA 61.161 66.667 0.00 0.00 36.24 5.36
124 125 4.301027 CGGATACCGCCTCCTGCC 62.301 72.222 0.00 0.00 41.17 4.85
134 135 2.024176 ACAAGCACATGTCGGATACC 57.976 50.000 0.00 0.00 0.00 2.73
135 136 4.778842 CTTACAAGCACATGTCGGATAC 57.221 45.455 0.00 0.00 34.75 2.24
150 151 1.617850 CCATGCAAACCTGGCTTACAA 59.382 47.619 0.00 0.00 0.00 2.41
151 152 1.255882 CCATGCAAACCTGGCTTACA 58.744 50.000 0.00 0.00 0.00 2.41
152 153 0.532115 CCCATGCAAACCTGGCTTAC 59.468 55.000 0.00 0.00 0.00 2.34
153 154 0.114168 ACCCATGCAAACCTGGCTTA 59.886 50.000 0.00 0.00 0.00 3.09
154 155 1.152269 ACCCATGCAAACCTGGCTT 60.152 52.632 0.00 0.00 0.00 4.35
155 156 1.909781 CACCCATGCAAACCTGGCT 60.910 57.895 0.00 0.00 0.00 4.75
157 158 0.033781 CAACACCCATGCAAACCTGG 59.966 55.000 0.00 0.00 0.00 4.45
158 159 1.000060 CTCAACACCCATGCAAACCTG 60.000 52.381 0.00 0.00 0.00 4.00
161 162 0.319813 GCCTCAACACCCATGCAAAC 60.320 55.000 0.00 0.00 0.00 2.93
163 164 2.267351 CGCCTCAACACCCATGCAA 61.267 57.895 0.00 0.00 0.00 4.08
164 165 2.672651 CGCCTCAACACCCATGCA 60.673 61.111 0.00 0.00 0.00 3.96
165 166 4.120331 GCGCCTCAACACCCATGC 62.120 66.667 0.00 0.00 0.00 4.06
166 167 3.443045 GGCGCCTCAACACCCATG 61.443 66.667 22.15 0.00 0.00 3.66
167 168 4.740822 GGGCGCCTCAACACCCAT 62.741 66.667 28.56 0.00 42.33 4.00
181 182 4.700365 GGCTGTTGTTTCGCGGGC 62.700 66.667 6.13 0.00 0.00 6.13
182 183 2.731587 CTTGGCTGTTGTTTCGCGGG 62.732 60.000 6.13 0.00 0.00 6.13
184 185 2.010817 GCTTGGCTGTTGTTTCGCG 61.011 57.895 0.00 0.00 0.00 5.87
186 187 1.587946 GTTTGCTTGGCTGTTGTTTCG 59.412 47.619 0.00 0.00 0.00 3.46
187 188 2.604462 CTGTTTGCTTGGCTGTTGTTTC 59.396 45.455 0.00 0.00 0.00 2.78
189 190 1.550072 ACTGTTTGCTTGGCTGTTGTT 59.450 42.857 0.00 0.00 0.00 2.83
190 191 1.185315 ACTGTTTGCTTGGCTGTTGT 58.815 45.000 0.00 0.00 0.00 3.32
191 192 2.298411 AACTGTTTGCTTGGCTGTTG 57.702 45.000 0.00 0.00 0.00 3.33
192 193 2.233431 TCAAACTGTTTGCTTGGCTGTT 59.767 40.909 24.62 0.00 40.43 3.16
193 194 1.824230 TCAAACTGTTTGCTTGGCTGT 59.176 42.857 24.62 0.00 40.43 4.40
194 195 2.582728 TCAAACTGTTTGCTTGGCTG 57.417 45.000 24.62 3.62 40.43 4.85
195 196 2.694628 TCATCAAACTGTTTGCTTGGCT 59.305 40.909 24.62 5.70 40.43 4.75
196 197 3.096489 TCATCAAACTGTTTGCTTGGC 57.904 42.857 24.62 0.00 40.43 4.52
197 198 5.130292 AGATCATCAAACTGTTTGCTTGG 57.870 39.130 24.62 14.70 40.43 3.61
198 199 5.981315 ACAAGATCATCAAACTGTTTGCTTG 59.019 36.000 28.81 28.81 39.48 4.01
199 200 6.152932 ACAAGATCATCAAACTGTTTGCTT 57.847 33.333 24.62 18.54 40.43 3.91
200 201 5.278660 GGACAAGATCATCAAACTGTTTGCT 60.279 40.000 24.62 15.01 40.43 3.91
201 202 4.919754 GGACAAGATCATCAAACTGTTTGC 59.080 41.667 24.62 12.60 40.43 3.68
202 203 5.149273 CGGACAAGATCATCAAACTGTTTG 58.851 41.667 23.72 23.72 41.96 2.93
203 204 4.216257 CCGGACAAGATCATCAAACTGTTT 59.784 41.667 0.00 0.00 0.00 2.83
204 205 3.753272 CCGGACAAGATCATCAAACTGTT 59.247 43.478 0.00 0.00 0.00 3.16
206 207 2.679837 CCCGGACAAGATCATCAAACTG 59.320 50.000 0.73 0.00 0.00 3.16
207 208 2.356125 CCCCGGACAAGATCATCAAACT 60.356 50.000 0.73 0.00 0.00 2.66
208 209 2.017049 CCCCGGACAAGATCATCAAAC 58.983 52.381 0.73 0.00 0.00 2.93
209 210 1.681780 GCCCCGGACAAGATCATCAAA 60.682 52.381 0.73 0.00 0.00 2.69
212 213 0.250081 GAGCCCCGGACAAGATCATC 60.250 60.000 0.73 0.00 0.00 2.92
213 214 1.832912 GAGCCCCGGACAAGATCAT 59.167 57.895 0.73 0.00 0.00 2.45
215 216 2.107141 CGAGCCCCGGACAAGATC 59.893 66.667 0.73 0.00 33.91 2.75
226 227 4.779733 TCTGGAGGTCCCGAGCCC 62.780 72.222 0.00 0.00 37.93 5.19
227 228 0.759436 TAATCTGGAGGTCCCGAGCC 60.759 60.000 0.00 0.00 37.93 4.70
228 229 1.120530 TTAATCTGGAGGTCCCGAGC 58.879 55.000 0.00 0.00 37.93 5.03
229 230 3.388024 TGATTTAATCTGGAGGTCCCGAG 59.612 47.826 6.50 0.00 37.93 4.63
230 231 3.380393 TGATTTAATCTGGAGGTCCCGA 58.620 45.455 6.50 0.00 37.93 5.14
231 232 3.733337 CTGATTTAATCTGGAGGTCCCG 58.267 50.000 6.50 0.00 37.93 5.14
232 233 3.481453 GCTGATTTAATCTGGAGGTCCC 58.519 50.000 12.51 0.00 34.29 4.46
233 234 3.134458 CGCTGATTTAATCTGGAGGTCC 58.866 50.000 12.51 0.00 0.00 4.46
234 235 3.557595 CACGCTGATTTAATCTGGAGGTC 59.442 47.826 12.51 0.00 0.00 3.85
235 236 3.535561 CACGCTGATTTAATCTGGAGGT 58.464 45.455 12.51 3.26 0.00 3.85
237 238 3.535561 ACCACGCTGATTTAATCTGGAG 58.464 45.455 15.05 8.56 0.00 3.86
238 239 3.055458 TGACCACGCTGATTTAATCTGGA 60.055 43.478 15.05 0.00 0.00 3.86
240 241 4.024556 GGATGACCACGCTGATTTAATCTG 60.025 45.833 6.50 6.96 35.97 2.90
242 243 4.130118 AGGATGACCACGCTGATTTAATC 58.870 43.478 0.00 0.00 38.94 1.75
243 244 4.130118 GAGGATGACCACGCTGATTTAAT 58.870 43.478 0.00 0.00 38.94 1.40
244 245 3.531538 GAGGATGACCACGCTGATTTAA 58.468 45.455 0.00 0.00 38.94 1.52
245 246 2.481276 CGAGGATGACCACGCTGATTTA 60.481 50.000 0.00 0.00 42.39 1.40
246 247 1.740380 CGAGGATGACCACGCTGATTT 60.740 52.381 0.00 0.00 42.39 2.17
247 248 0.179100 CGAGGATGACCACGCTGATT 60.179 55.000 0.00 0.00 42.39 2.57
248 249 1.037579 TCGAGGATGACCACGCTGAT 61.038 55.000 0.00 0.00 46.66 2.90
249 250 1.657751 CTCGAGGATGACCACGCTGA 61.658 60.000 3.91 0.00 46.66 4.26
250 251 1.226802 CTCGAGGATGACCACGCTG 60.227 63.158 3.91 0.00 46.66 5.18
252 253 0.318275 GATCTCGAGGATGACCACGC 60.318 60.000 13.56 0.00 46.66 5.34
254 255 2.690497 TGAAGATCTCGAGGATGACCAC 59.310 50.000 13.56 0.00 38.94 4.16
255 256 3.018423 TGAAGATCTCGAGGATGACCA 57.982 47.619 13.56 1.60 38.94 4.02
256 257 3.320541 ACATGAAGATCTCGAGGATGACC 59.679 47.826 13.56 0.00 34.33 4.02
257 258 4.582701 ACATGAAGATCTCGAGGATGAC 57.417 45.455 13.56 2.95 34.33 3.06
258 259 4.217334 GCTACATGAAGATCTCGAGGATGA 59.783 45.833 13.56 0.00 34.33 2.92
259 260 4.022503 TGCTACATGAAGATCTCGAGGATG 60.023 45.833 13.56 7.99 34.33 3.51
261 262 3.555966 TGCTACATGAAGATCTCGAGGA 58.444 45.455 13.56 0.00 0.00 3.71
262 263 3.998099 TGCTACATGAAGATCTCGAGG 57.002 47.619 13.56 0.00 0.00 4.63
263 264 7.537715 AGATTATGCTACATGAAGATCTCGAG 58.462 38.462 5.93 5.93 0.00 4.04
264 265 7.459795 AGATTATGCTACATGAAGATCTCGA 57.540 36.000 0.00 0.00 0.00 4.04
265 266 9.800433 ATAAGATTATGCTACATGAAGATCTCG 57.200 33.333 0.00 0.00 0.00 4.04
273 274 7.550551 GCCTGCTTATAAGATTATGCTACATGA 59.449 37.037 16.85 0.00 0.00 3.07
274 275 7.551974 AGCCTGCTTATAAGATTATGCTACATG 59.448 37.037 16.85 0.00 0.00 3.21
276 277 7.009179 AGCCTGCTTATAAGATTATGCTACA 57.991 36.000 16.85 0.61 0.00 2.74
277 278 7.913674 AAGCCTGCTTATAAGATTATGCTAC 57.086 36.000 16.85 0.00 34.05 3.58
278 279 7.391554 CCAAAGCCTGCTTATAAGATTATGCTA 59.608 37.037 16.85 0.00 34.84 3.49
279 280 6.208204 CCAAAGCCTGCTTATAAGATTATGCT 59.792 38.462 16.85 11.90 34.84 3.79
280 281 6.207417 TCCAAAGCCTGCTTATAAGATTATGC 59.793 38.462 16.85 10.01 34.84 3.14
281 282 7.663081 TCTCCAAAGCCTGCTTATAAGATTATG 59.337 37.037 16.85 5.17 34.84 1.90
282 283 7.749666 TCTCCAAAGCCTGCTTATAAGATTAT 58.250 34.615 16.85 0.00 34.84 1.28
283 284 7.136822 TCTCCAAAGCCTGCTTATAAGATTA 57.863 36.000 16.85 0.98 34.84 1.75
285 286 5.131809 ACTCTCCAAAGCCTGCTTATAAGAT 59.868 40.000 16.85 0.00 34.84 2.40
286 287 4.471386 ACTCTCCAAAGCCTGCTTATAAGA 59.529 41.667 16.85 7.20 34.84 2.10
287 288 4.775236 ACTCTCCAAAGCCTGCTTATAAG 58.225 43.478 8.20 8.20 34.84 1.73
288 289 4.844349 ACTCTCCAAAGCCTGCTTATAA 57.156 40.909 4.57 0.00 34.84 0.98
289 290 4.962995 AGTACTCTCCAAAGCCTGCTTATA 59.037 41.667 4.57 0.00 34.84 0.98
290 291 3.777522 AGTACTCTCCAAAGCCTGCTTAT 59.222 43.478 4.57 0.00 34.84 1.73
291 292 3.173965 AGTACTCTCCAAAGCCTGCTTA 58.826 45.455 4.57 0.00 34.84 3.09
293 294 1.650528 AGTACTCTCCAAAGCCTGCT 58.349 50.000 0.00 0.00 0.00 4.24
295 296 3.007398 ACTGAAGTACTCTCCAAAGCCTG 59.993 47.826 0.00 0.00 0.00 4.85
298 299 3.006967 TGGACTGAAGTACTCTCCAAAGC 59.993 47.826 0.00 0.00 0.00 3.51
299 300 4.873746 TGGACTGAAGTACTCTCCAAAG 57.126 45.455 0.00 0.00 0.00 2.77
300 301 4.020218 CCATGGACTGAAGTACTCTCCAAA 60.020 45.833 5.56 0.00 0.00 3.28
301 302 3.515502 CCATGGACTGAAGTACTCTCCAA 59.484 47.826 5.56 1.84 0.00 3.53
307 308 2.540383 TGCTCCATGGACTGAAGTACT 58.460 47.619 11.44 0.00 0.00 2.73
308 309 3.055819 TCTTGCTCCATGGACTGAAGTAC 60.056 47.826 11.44 0.00 0.00 2.73
309 310 3.173151 TCTTGCTCCATGGACTGAAGTA 58.827 45.455 11.44 0.00 0.00 2.24
310 311 1.980765 TCTTGCTCCATGGACTGAAGT 59.019 47.619 11.44 0.00 0.00 3.01
311 312 2.746362 GTTCTTGCTCCATGGACTGAAG 59.254 50.000 11.44 12.64 0.00 3.02
312 313 2.553028 GGTTCTTGCTCCATGGACTGAA 60.553 50.000 11.44 9.75 0.00 3.02
313 314 1.003580 GGTTCTTGCTCCATGGACTGA 59.996 52.381 11.44 3.78 0.00 3.41
316 317 1.648467 GCGGTTCTTGCTCCATGGAC 61.648 60.000 11.44 8.83 0.00 4.02
317 318 1.377202 GCGGTTCTTGCTCCATGGA 60.377 57.895 15.27 15.27 0.00 3.41
318 319 1.377725 AGCGGTTCTTGCTCCATGG 60.378 57.895 4.97 4.97 38.62 3.66
326 327 1.006102 ACAGGACGAGCGGTTCTTG 60.006 57.895 0.00 0.00 29.42 3.02
327 328 1.289380 GACAGGACGAGCGGTTCTT 59.711 57.895 0.00 0.00 29.42 2.52
328 329 2.637383 GGACAGGACGAGCGGTTCT 61.637 63.158 0.00 0.00 33.48 3.01
329 330 2.126031 GGACAGGACGAGCGGTTC 60.126 66.667 0.00 0.00 0.00 3.62
330 331 2.227089 GATGGACAGGACGAGCGGTT 62.227 60.000 0.00 0.00 0.00 4.44
331 332 2.680352 ATGGACAGGACGAGCGGT 60.680 61.111 0.00 0.00 0.00 5.68
332 333 2.105128 GATGGACAGGACGAGCGG 59.895 66.667 0.00 0.00 0.00 5.52
334 335 2.105128 CGGATGGACAGGACGAGC 59.895 66.667 0.00 0.00 0.00 5.03
335 336 1.139734 CACGGATGGACAGGACGAG 59.860 63.158 0.00 0.00 0.00 4.18
336 337 1.303806 TCACGGATGGACAGGACGA 60.304 57.895 0.00 0.00 0.00 4.20
337 338 1.139734 CTCACGGATGGACAGGACG 59.860 63.158 0.00 0.00 0.00 4.79
338 339 0.608640 AACTCACGGATGGACAGGAC 59.391 55.000 0.00 0.00 0.00 3.85
339 340 0.608130 CAACTCACGGATGGACAGGA 59.392 55.000 0.00 0.00 0.00 3.86
341 342 0.608130 TCCAACTCACGGATGGACAG 59.392 55.000 0.00 0.00 41.13 3.51
342 343 2.753319 TCCAACTCACGGATGGACA 58.247 52.632 0.00 0.00 41.13 4.02
346 347 1.759445 AGGAGATCCAACTCACGGATG 59.241 52.381 0.92 0.00 43.49 3.51
347 348 1.759445 CAGGAGATCCAACTCACGGAT 59.241 52.381 0.92 0.00 46.20 4.18
348 349 1.186200 CAGGAGATCCAACTCACGGA 58.814 55.000 0.92 0.00 38.51 4.69
349 350 0.176680 CCAGGAGATCCAACTCACGG 59.823 60.000 0.92 0.00 38.51 4.94
350 351 1.186200 TCCAGGAGATCCAACTCACG 58.814 55.000 0.92 0.00 38.51 4.35
352 353 4.107072 AGAAATCCAGGAGATCCAACTCA 58.893 43.478 0.92 0.00 38.51 3.41
353 354 4.769345 AGAAATCCAGGAGATCCAACTC 57.231 45.455 0.92 0.00 38.89 3.01
354 355 4.410555 GGTAGAAATCCAGGAGATCCAACT 59.589 45.833 0.92 0.00 38.89 3.16
357 358 4.078336 AGAGGTAGAAATCCAGGAGATCCA 60.078 45.833 0.92 0.00 38.89 3.41
358 359 4.488770 AGAGGTAGAAATCCAGGAGATCC 58.511 47.826 0.00 0.00 32.47 3.36
359 360 5.393866 AGAGAGGTAGAAATCCAGGAGATC 58.606 45.833 0.00 0.00 32.47 2.75
360 361 5.417170 AGAGAGGTAGAAATCCAGGAGAT 57.583 43.478 0.00 0.00 36.48 2.75
361 362 4.890499 AGAGAGGTAGAAATCCAGGAGA 57.110 45.455 0.00 0.00 0.00 3.71
362 363 5.188751 ACAAAGAGAGGTAGAAATCCAGGAG 59.811 44.000 0.00 0.00 0.00 3.69
363 364 5.094387 ACAAAGAGAGGTAGAAATCCAGGA 58.906 41.667 0.00 0.00 0.00 3.86
364 365 5.428184 ACAAAGAGAGGTAGAAATCCAGG 57.572 43.478 0.00 0.00 0.00 4.45
366 367 6.187727 ACAACAAAGAGAGGTAGAAATCCA 57.812 37.500 0.00 0.00 0.00 3.41
367 368 6.568653 GCAACAACAAAGAGAGGTAGAAATCC 60.569 42.308 0.00 0.00 0.00 3.01
368 369 6.374578 GCAACAACAAAGAGAGGTAGAAATC 58.625 40.000 0.00 0.00 0.00 2.17
369 370 5.049405 CGCAACAACAAAGAGAGGTAGAAAT 60.049 40.000 0.00 0.00 0.00 2.17
370 371 4.272504 CGCAACAACAAAGAGAGGTAGAAA 59.727 41.667 0.00 0.00 0.00 2.52
371 372 3.807622 CGCAACAACAAAGAGAGGTAGAA 59.192 43.478 0.00 0.00 0.00 2.10
372 373 3.390135 CGCAACAACAAAGAGAGGTAGA 58.610 45.455 0.00 0.00 0.00 2.59
375 376 1.308998 CCGCAACAACAAAGAGAGGT 58.691 50.000 0.00 0.00 0.00 3.85
376 377 0.593128 CCCGCAACAACAAAGAGAGG 59.407 55.000 0.00 0.00 0.00 3.69
377 378 1.264288 GTCCCGCAACAACAAAGAGAG 59.736 52.381 0.00 0.00 0.00 3.20
378 379 1.134220 AGTCCCGCAACAACAAAGAGA 60.134 47.619 0.00 0.00 0.00 3.10
380 381 1.673920 GAAGTCCCGCAACAACAAAGA 59.326 47.619 0.00 0.00 0.00 2.52
381 382 1.269051 GGAAGTCCCGCAACAACAAAG 60.269 52.381 0.00 0.00 0.00 2.77
382 383 0.741915 GGAAGTCCCGCAACAACAAA 59.258 50.000 0.00 0.00 0.00 2.83
383 384 0.394488 TGGAAGTCCCGCAACAACAA 60.394 50.000 0.00 0.00 37.93 2.83
384 385 0.394488 TTGGAAGTCCCGCAACAACA 60.394 50.000 0.00 0.00 37.93 3.33
385 386 0.030235 GTTGGAAGTCCCGCAACAAC 59.970 55.000 0.00 0.00 37.93 3.32
387 388 0.534203 GAGTTGGAAGTCCCGCAACA 60.534 55.000 0.00 0.00 37.93 3.33
388 389 0.534203 TGAGTTGGAAGTCCCGCAAC 60.534 55.000 0.00 0.00 37.93 4.17
389 390 0.400213 ATGAGTTGGAAGTCCCGCAA 59.600 50.000 0.00 0.00 37.93 4.85
390 391 0.321564 CATGAGTTGGAAGTCCCGCA 60.322 55.000 0.00 0.00 37.93 5.69
403 404 2.402564 CCTACCTGTCCATCCATGAGT 58.597 52.381 0.00 0.00 0.00 3.41
407 408 1.410850 CCGCCTACCTGTCCATCCAT 61.411 60.000 0.00 0.00 0.00 3.41
408 409 2.063979 CCGCCTACCTGTCCATCCA 61.064 63.158 0.00 0.00 0.00 3.41
410 411 2.109181 GCCGCCTACCTGTCCATC 59.891 66.667 0.00 0.00 0.00 3.51
411 412 3.849951 CGCCGCCTACCTGTCCAT 61.850 66.667 0.00 0.00 0.00 3.41
413 414 3.718210 CTTCGCCGCCTACCTGTCC 62.718 68.421 0.00 0.00 0.00 4.02
414 415 2.202756 CTTCGCCGCCTACCTGTC 60.203 66.667 0.00 0.00 0.00 3.51
425 426 4.404654 CACTTTGCCGCCTTCGCC 62.405 66.667 0.00 0.00 0.00 5.54
441 442 4.344865 GCGGGAAAGTGAGGGGCA 62.345 66.667 0.00 0.00 0.00 5.36
477 483 4.819783 ACATGGTTGTGGTGCGAT 57.180 50.000 0.00 0.00 33.85 4.58
517 525 0.989212 TAAAAGGGGGATGGCGGCTA 60.989 55.000 11.43 0.00 0.00 3.93
538 546 2.247635 AGTAAGGAGATGGCTGGAGGTA 59.752 50.000 0.00 0.00 0.00 3.08
563 571 1.974957 TGTTGTTAGGGAGTAGCTGCA 59.025 47.619 4.12 0.00 0.00 4.41
581 589 1.067295 TGAGAAGTGGCCCAGATTGT 58.933 50.000 0.00 0.00 0.00 2.71
598 606 5.554437 TTTGAGTAGTAATGTGGGTGTGA 57.446 39.130 0.00 0.00 0.00 3.58
602 610 4.538490 TGGGATTTGAGTAGTAATGTGGGT 59.462 41.667 0.00 0.00 0.00 4.51
608 616 4.116113 TGGGGTGGGATTTGAGTAGTAAT 58.884 43.478 0.00 0.00 0.00 1.89
609 617 3.533146 TGGGGTGGGATTTGAGTAGTAA 58.467 45.455 0.00 0.00 0.00 2.24
613 621 3.309556 GGATTTGGGGTGGGATTTGAGTA 60.310 47.826 0.00 0.00 0.00 2.59
628 636 3.244840 TGGCAAAATTGGAAGGGATTTGG 60.245 43.478 0.00 0.00 32.91 3.28
650 658 3.244700 GCTATTGCTGATGGTAGGTGGAT 60.245 47.826 0.00 0.00 36.03 3.41
651 659 2.104792 GCTATTGCTGATGGTAGGTGGA 59.895 50.000 0.00 0.00 36.03 4.02
736 879 0.952497 ATGCGCTGTGGTCTGTGAAG 60.952 55.000 9.73 0.00 0.00 3.02
737 880 0.950555 GATGCGCTGTGGTCTGTGAA 60.951 55.000 9.73 0.00 0.00 3.18
742 885 3.675086 CATAGATGCGCTGTGGTCT 57.325 52.632 9.73 6.99 32.59 3.85
752 895 2.237392 GGTAGGGTGGATCCATAGATGC 59.763 54.545 19.62 8.11 41.03 3.91
770 913 1.879575 CAGAAGGGAGGTGATGGGTA 58.120 55.000 0.00 0.00 0.00 3.69
791 934 0.912486 GAGGTGATGGTTAGGCAGGT 59.088 55.000 0.00 0.00 0.00 4.00
930 1082 3.120321 TGTTGTTTGCCTCGTCTATGT 57.880 42.857 0.00 0.00 0.00 2.29
943 1095 1.238439 CCGCAGTCCAGATGTTGTTT 58.762 50.000 0.00 0.00 0.00 2.83
944 1096 1.237285 GCCGCAGTCCAGATGTTGTT 61.237 55.000 0.00 0.00 0.00 2.83
949 1101 1.227380 GTAGGCCGCAGTCCAGATG 60.227 63.158 0.00 0.00 0.00 2.90
950 1102 1.264749 TTGTAGGCCGCAGTCCAGAT 61.265 55.000 0.00 0.00 0.00 2.90
989 1143 4.671880 ATCGCGCTCATAAGTACTAGAG 57.328 45.455 5.56 12.95 0.00 2.43
1001 1160 1.137194 CATGCCAAAATCGCGCTCA 59.863 52.632 5.56 0.00 0.00 4.26
1024 1188 1.407989 CCTCCTTGAACTGCTCCCATC 60.408 57.143 0.00 0.00 0.00 3.51
1136 1302 1.550524 ACATGAGCGCTAGAAACCTGA 59.449 47.619 11.50 0.00 0.00 3.86
1190 1359 3.187700 CCTGCTATGTACAGAAACCGTC 58.812 50.000 0.33 0.00 37.32 4.79
1233 1409 3.053399 CGTTGAAGCTCGACGTCG 58.947 61.111 31.30 31.30 46.28 5.12
1251 1427 1.204941 GCGGTGTAGAAGTCAGATGGT 59.795 52.381 0.00 0.00 0.00 3.55
1322 1498 4.386413 CAGAAGGCTGGTGTGGTC 57.614 61.111 0.00 0.00 38.51 4.02
1349 1525 2.805313 ATCGGAGAGGCACAGGGACA 62.805 60.000 0.00 0.00 43.63 4.02
1351 1527 1.306141 AATCGGAGAGGCACAGGGA 60.306 57.895 0.00 0.00 43.63 4.20
1354 1530 0.103937 GGAGAATCGGAGAGGCACAG 59.896 60.000 0.00 0.00 43.63 3.66
1361 1537 0.537188 GGCAACAGGAGAATCGGAGA 59.463 55.000 0.00 0.00 45.75 3.71
1409 1585 1.486726 ACAGAATAGGTGCTAGTGGCC 59.513 52.381 0.00 0.00 40.92 5.36
1436 1612 0.834612 CGGGGTTGGCTATGGAGTAA 59.165 55.000 0.00 0.00 0.00 2.24
1437 1613 1.052124 CCGGGGTTGGCTATGGAGTA 61.052 60.000 0.00 0.00 0.00 2.59
1456 1632 0.675633 AGATGCCAAACCTGTTGTGC 59.324 50.000 0.00 0.00 0.00 4.57
1504 1681 0.106268 TTGAAGCAAAGGTCCTGGCA 60.106 50.000 15.97 0.00 0.00 4.92
1674 1852 7.724951 AGGATCTACTACTGACATAACCCTAAC 59.275 40.741 0.00 0.00 0.00 2.34
1703 1881 5.061179 TCGAATGGTCAGACGTAGATGATA 58.939 41.667 0.00 0.00 0.00 2.15
1778 1957 0.671796 TCGTGGAGAAAGCTCGAACA 59.328 50.000 0.00 0.00 42.25 3.18
1800 1979 1.067354 ACGATGTTACGACCACTTCCC 60.067 52.381 0.00 0.00 37.03 3.97
1829 2008 6.569127 TGGTGTAGTGTCCCACAATATTAT 57.431 37.500 0.00 0.00 36.74 1.28
1845 2024 2.012051 GCGGGGAACAGAATGGTGTAG 61.012 57.143 0.00 0.00 33.00 2.74
1848 2029 1.002134 AGCGGGGAACAGAATGGTG 60.002 57.895 0.00 0.00 33.00 4.17
1857 2038 3.312697 GTGATAAAGAATGAGCGGGGAAC 59.687 47.826 0.00 0.00 0.00 3.62
1864 2045 7.009568 AGAACAATCGTGATAAAGAATGAGC 57.990 36.000 0.00 0.00 0.00 4.26
1897 2078 1.289694 CAGCAGCGCATGGGAAAAA 59.710 52.632 14.90 0.00 0.00 1.94
1909 2090 1.069049 ACATGAAAAACCCACAGCAGC 59.931 47.619 0.00 0.00 0.00 5.25
1913 2094 7.598493 CCAAACTATAACATGAAAAACCCACAG 59.402 37.037 0.00 0.00 0.00 3.66
1963 2144 7.502120 AAACAGCCTTGCATATAGTATCAAG 57.498 36.000 0.00 3.98 36.57 3.02
1964 2145 7.880160 AAAACAGCCTTGCATATAGTATCAA 57.120 32.000 0.00 0.00 0.00 2.57
2021 2202 5.812127 AGCAAAACAAAGAGAAAATGTGGAC 59.188 36.000 0.00 0.00 0.00 4.02
2111 2292 1.873903 GCAGCACGTTCCAGAGAGAAA 60.874 52.381 0.00 0.00 0.00 2.52
2164 2473 3.695830 TGGGTAACTTTAGAGGTGCAG 57.304 47.619 0.00 0.00 0.00 4.41
2257 2566 9.561069 GCCATGAGGATCTTAAACTTAAAGATA 57.439 33.333 0.00 0.00 36.89 1.98
2270 2580 0.924823 AAGCCTGCCATGAGGATCTT 59.075 50.000 4.64 0.00 34.69 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.