Multiple sequence alignment - TraesCS5A01G178700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G178700 chr5A 100.000 1934 0 0 710 2643 376836585 376838518 0.000000e+00 3572.0
1 TraesCS5A01G178700 chr5A 100.000 396 0 0 1 396 376835876 376836271 0.000000e+00 732.0
2 TraesCS5A01G178700 chr5B 91.442 1484 71 18 772 2250 322289133 322290565 0.000000e+00 1986.0
3 TraesCS5A01G178700 chr5B 92.079 101 3 1 2414 2509 322327925 322328025 1.280000e-28 137.0
4 TraesCS5A01G178700 chr5B 94.872 78 4 0 2539 2616 322328023 322328100 3.570000e-24 122.0
5 TraesCS5A01G178700 chr5D 93.677 1202 57 13 769 1959 285022920 285024113 0.000000e+00 1781.0
6 TraesCS5A01G178700 chr5D 90.979 388 32 3 1 387 563410116 563410501 1.080000e-143 520.0
7 TraesCS5A01G178700 chr5D 89.421 397 38 4 2 396 447104936 447105330 5.080000e-137 497.0
8 TraesCS5A01G178700 chr5D 90.747 281 18 3 1962 2242 285024170 285024442 4.160000e-98 368.0
9 TraesCS5A01G178700 chr5D 85.953 299 31 8 2241 2536 285024700 285024990 2.560000e-80 309.0
10 TraesCS5A01G178700 chr5D 97.727 44 1 0 2557 2600 285024992 285025035 2.820000e-10 76.8
11 TraesCS5A01G178700 chr7D 91.237 388 31 2 2 388 622549541 622549926 2.330000e-145 525.0
12 TraesCS5A01G178700 chr3D 90.722 388 35 1 1 388 532181166 532181552 1.400000e-142 516.0
13 TraesCS5A01G178700 chr3D 89.055 402 31 6 1 396 565623023 565622629 1.100000e-133 486.0
14 TraesCS5A01G178700 chr2D 90.231 389 37 1 1 388 78534760 78534372 8.440000e-140 507.0
15 TraesCS5A01G178700 chr2D 88.101 395 42 4 2 396 77441407 77441018 5.150000e-127 464.0
16 TraesCS5A01G178700 chr2D 100.000 29 0 0 2611 2639 542964970 542964942 1.000000e-03 54.7
17 TraesCS5A01G178700 chr2A 90.130 385 38 0 4 388 179676925 179676541 3.930000e-138 501.0
18 TraesCS5A01G178700 chr6A 89.610 385 36 2 12 396 101427083 101427463 1.100000e-133 486.0
19 TraesCS5A01G178700 chr4B 92.174 230 18 0 953 1182 277555389 277555160 2.540000e-85 326.0
20 TraesCS5A01G178700 chr4B 90.948 232 20 1 952 1182 215633174 215633405 7.100000e-81 311.0
21 TraesCS5A01G178700 chr6B 90.517 232 21 1 952 1182 62539627 62539396 3.310000e-79 305.0
22 TraesCS5A01G178700 chr3B 90.135 223 22 0 960 1182 599757830 599757608 9.250000e-75 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G178700 chr5A 376835876 376838518 2642 False 2152.0 3572 100.000 1 2643 2 chr5A.!!$F1 2642
1 TraesCS5A01G178700 chr5B 322289133 322290565 1432 False 1986.0 1986 91.442 772 2250 1 chr5B.!!$F1 1478
2 TraesCS5A01G178700 chr5D 285022920 285025035 2115 False 633.7 1781 92.026 769 2600 4 chr5D.!!$F3 1831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.028902 ACGCGTCCTTTCTTTTGCAC 59.971 50.0 5.58 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2178 0.323725 CAAGTGGCTGCCAGGGTTAT 60.324 55.0 24.1 1.68 32.34 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.838152 GCCAAGCCCGAGCGATGA 62.838 66.667 0.00 0.00 46.67 2.92
52 53 2.109799 CCAAGCCCGAGCGATGAT 59.890 61.111 0.00 0.00 46.67 2.45
53 54 2.249535 CCAAGCCCGAGCGATGATG 61.250 63.158 0.00 0.00 46.67 3.07
54 55 2.590007 AAGCCCGAGCGATGATGC 60.590 61.111 0.00 0.00 46.67 3.91
55 56 4.615815 AGCCCGAGCGATGATGCC 62.616 66.667 0.00 0.00 46.67 4.40
56 57 4.615815 GCCCGAGCGATGATGCCT 62.616 66.667 0.00 0.00 34.65 4.75
57 58 2.356793 CCCGAGCGATGATGCCTC 60.357 66.667 0.00 0.00 34.65 4.70
58 59 2.356793 CCGAGCGATGATGCCTCC 60.357 66.667 0.00 0.00 34.65 4.30
59 60 2.418777 CGAGCGATGATGCCTCCA 59.581 61.111 0.00 0.00 34.65 3.86
60 61 1.005275 CGAGCGATGATGCCTCCAT 60.005 57.895 0.00 0.00 34.65 3.41
61 62 1.289800 CGAGCGATGATGCCTCCATG 61.290 60.000 0.00 0.00 34.65 3.66
62 63 0.034476 GAGCGATGATGCCTCCATGA 59.966 55.000 0.00 0.00 34.65 3.07
63 64 0.250209 AGCGATGATGCCTCCATGAC 60.250 55.000 0.00 0.00 34.65 3.06
64 65 0.533531 GCGATGATGCCTCCATGACA 60.534 55.000 0.00 0.00 0.00 3.58
65 66 1.224075 CGATGATGCCTCCATGACAC 58.776 55.000 0.00 0.00 0.00 3.67
66 67 1.602311 GATGATGCCTCCATGACACC 58.398 55.000 0.00 0.00 0.00 4.16
67 68 0.184451 ATGATGCCTCCATGACACCC 59.816 55.000 0.00 0.00 0.00 4.61
68 69 1.206811 TGATGCCTCCATGACACCCA 61.207 55.000 0.00 0.00 0.00 4.51
69 70 0.465097 GATGCCTCCATGACACCCAG 60.465 60.000 0.00 0.00 0.00 4.45
70 71 2.439156 GCCTCCATGACACCCAGC 60.439 66.667 0.00 0.00 0.00 4.85
71 72 3.080641 CCTCCATGACACCCAGCA 58.919 61.111 0.00 0.00 0.00 4.41
72 73 1.377725 CCTCCATGACACCCAGCAC 60.378 63.158 0.00 0.00 0.00 4.40
73 74 1.681666 CTCCATGACACCCAGCACT 59.318 57.895 0.00 0.00 0.00 4.40
74 75 0.675837 CTCCATGACACCCAGCACTG 60.676 60.000 0.00 0.00 0.00 3.66
75 76 1.126948 TCCATGACACCCAGCACTGA 61.127 55.000 0.00 0.00 0.00 3.41
76 77 0.250858 CCATGACACCCAGCACTGAA 60.251 55.000 0.00 0.00 0.00 3.02
77 78 1.162698 CATGACACCCAGCACTGAAG 58.837 55.000 0.00 0.00 0.00 3.02
78 79 0.607489 ATGACACCCAGCACTGAAGC 60.607 55.000 0.00 0.00 0.00 3.86
79 80 1.968540 GACACCCAGCACTGAAGCC 60.969 63.158 0.00 0.00 34.23 4.35
80 81 2.113774 CACCCAGCACTGAAGCCA 59.886 61.111 0.00 0.00 34.23 4.75
81 82 2.113986 ACCCAGCACTGAAGCCAC 59.886 61.111 0.00 0.00 34.23 5.01
82 83 3.052082 CCCAGCACTGAAGCCACG 61.052 66.667 0.00 0.00 34.23 4.94
83 84 3.730761 CCAGCACTGAAGCCACGC 61.731 66.667 0.00 0.00 34.23 5.34
84 85 3.730761 CAGCACTGAAGCCACGCC 61.731 66.667 0.00 0.00 34.23 5.68
87 88 3.414700 CACTGAAGCCACGCCGAC 61.415 66.667 0.00 0.00 0.00 4.79
120 121 4.477975 CACGCCGACTCCTCCGAC 62.478 72.222 0.00 0.00 0.00 4.79
121 122 4.719106 ACGCCGACTCCTCCGACT 62.719 66.667 0.00 0.00 0.00 4.18
122 123 3.878519 CGCCGACTCCTCCGACTC 61.879 72.222 0.00 0.00 0.00 3.36
123 124 3.519930 GCCGACTCCTCCGACTCC 61.520 72.222 0.00 0.00 0.00 3.85
124 125 3.203412 CCGACTCCTCCGACTCCG 61.203 72.222 0.00 0.00 0.00 4.63
147 148 3.302365 GGTTGACACCACCATTTGATG 57.698 47.619 0.00 0.00 43.61 3.07
148 149 2.610232 GGTTGACACCACCATTTGATGC 60.610 50.000 0.00 0.00 43.61 3.91
149 150 1.992538 TGACACCACCATTTGATGCA 58.007 45.000 0.00 0.00 0.00 3.96
150 151 2.527497 TGACACCACCATTTGATGCAT 58.473 42.857 0.00 0.00 0.00 3.96
151 152 2.898612 TGACACCACCATTTGATGCATT 59.101 40.909 0.00 0.00 0.00 3.56
152 153 3.255725 GACACCACCATTTGATGCATTG 58.744 45.455 0.00 0.00 0.00 2.82
153 154 2.004017 CACCACCATTTGATGCATTGC 58.996 47.619 0.00 0.46 0.00 3.56
154 155 1.065998 ACCACCATTTGATGCATTGCC 60.066 47.619 6.12 0.00 0.00 4.52
155 156 1.282817 CACCATTTGATGCATTGCCG 58.717 50.000 6.12 0.00 0.00 5.69
156 157 1.135053 CACCATTTGATGCATTGCCGA 60.135 47.619 6.12 0.00 0.00 5.54
157 158 1.135024 ACCATTTGATGCATTGCCGAC 60.135 47.619 6.12 0.00 0.00 4.79
158 159 1.193644 CATTTGATGCATTGCCGACG 58.806 50.000 6.12 0.00 0.00 5.12
159 160 0.526096 ATTTGATGCATTGCCGACGC 60.526 50.000 6.12 0.00 0.00 5.19
160 161 2.847501 TTTGATGCATTGCCGACGCG 62.848 55.000 3.53 3.53 38.08 6.01
161 162 3.864686 GATGCATTGCCGACGCGT 61.865 61.111 13.85 13.85 38.08 6.01
162 163 3.773649 GATGCATTGCCGACGCGTC 62.774 63.158 28.96 28.96 38.08 5.19
165 166 3.118454 CATTGCCGACGCGTCCTT 61.118 61.111 31.84 10.60 38.08 3.36
166 167 2.358247 ATTGCCGACGCGTCCTTT 60.358 55.556 31.84 10.96 38.08 3.11
167 168 2.388232 ATTGCCGACGCGTCCTTTC 61.388 57.895 31.84 18.37 38.08 2.62
168 169 2.781595 ATTGCCGACGCGTCCTTTCT 62.782 55.000 31.84 12.59 38.08 2.52
169 170 2.737376 GCCGACGCGTCCTTTCTT 60.737 61.111 31.84 0.00 0.00 2.52
170 171 2.315386 GCCGACGCGTCCTTTCTTT 61.315 57.895 31.84 0.00 0.00 2.52
171 172 1.838568 GCCGACGCGTCCTTTCTTTT 61.839 55.000 31.84 0.00 0.00 2.27
172 173 0.110823 CCGACGCGTCCTTTCTTTTG 60.111 55.000 31.84 14.98 0.00 2.44
173 174 0.721483 CGACGCGTCCTTTCTTTTGC 60.721 55.000 31.84 4.84 0.00 3.68
174 175 0.306533 GACGCGTCCTTTCTTTTGCA 59.693 50.000 28.61 0.00 0.00 4.08
175 176 0.028902 ACGCGTCCTTTCTTTTGCAC 59.971 50.000 5.58 0.00 0.00 4.57
176 177 0.991770 CGCGTCCTTTCTTTTGCACG 60.992 55.000 0.00 0.00 0.00 5.34
177 178 1.268778 GCGTCCTTTCTTTTGCACGC 61.269 55.000 0.00 0.00 44.90 5.34
178 179 0.660300 CGTCCTTTCTTTTGCACGCC 60.660 55.000 0.00 0.00 0.00 5.68
179 180 0.660300 GTCCTTTCTTTTGCACGCCG 60.660 55.000 0.00 0.00 0.00 6.46
180 181 0.816018 TCCTTTCTTTTGCACGCCGA 60.816 50.000 0.00 0.00 0.00 5.54
181 182 0.030101 CCTTTCTTTTGCACGCCGAA 59.970 50.000 0.00 0.00 0.00 4.30
182 183 1.120437 CTTTCTTTTGCACGCCGAAC 58.880 50.000 0.00 0.00 0.00 3.95
183 184 0.736053 TTTCTTTTGCACGCCGAACT 59.264 45.000 0.00 0.00 0.00 3.01
184 185 0.736053 TTCTTTTGCACGCCGAACTT 59.264 45.000 0.00 0.00 0.00 2.66
185 186 0.736053 TCTTTTGCACGCCGAACTTT 59.264 45.000 0.00 0.00 0.00 2.66
186 187 1.133407 TCTTTTGCACGCCGAACTTTT 59.867 42.857 0.00 0.00 0.00 2.27
187 188 1.923864 CTTTTGCACGCCGAACTTTTT 59.076 42.857 0.00 0.00 0.00 1.94
188 189 2.846039 TTTGCACGCCGAACTTTTTA 57.154 40.000 0.00 0.00 0.00 1.52
189 190 3.357166 TTTGCACGCCGAACTTTTTAT 57.643 38.095 0.00 0.00 0.00 1.40
190 191 3.357166 TTGCACGCCGAACTTTTTATT 57.643 38.095 0.00 0.00 0.00 1.40
191 192 2.656085 TGCACGCCGAACTTTTTATTG 58.344 42.857 0.00 0.00 0.00 1.90
192 193 2.290916 TGCACGCCGAACTTTTTATTGA 59.709 40.909 0.00 0.00 0.00 2.57
193 194 3.057876 TGCACGCCGAACTTTTTATTGAT 60.058 39.130 0.00 0.00 0.00 2.57
194 195 3.542310 GCACGCCGAACTTTTTATTGATC 59.458 43.478 0.00 0.00 0.00 2.92
195 196 3.778718 CACGCCGAACTTTTTATTGATCG 59.221 43.478 0.00 0.00 0.00 3.69
196 197 2.776225 CGCCGAACTTTTTATTGATCGC 59.224 45.455 0.00 0.00 0.00 4.58
197 198 3.105937 GCCGAACTTTTTATTGATCGCC 58.894 45.455 0.00 0.00 0.00 5.54
198 199 3.350912 CCGAACTTTTTATTGATCGCCG 58.649 45.455 0.00 0.00 0.00 6.46
199 200 3.062909 CCGAACTTTTTATTGATCGCCGA 59.937 43.478 0.00 0.00 0.00 5.54
200 201 4.436317 CCGAACTTTTTATTGATCGCCGAA 60.436 41.667 0.00 0.00 0.00 4.30
201 202 4.490890 CGAACTTTTTATTGATCGCCGAAC 59.509 41.667 0.00 0.00 0.00 3.95
202 203 5.622770 AACTTTTTATTGATCGCCGAACT 57.377 34.783 0.00 0.00 0.00 3.01
203 204 4.969816 ACTTTTTATTGATCGCCGAACTG 58.030 39.130 0.00 0.00 0.00 3.16
204 205 4.454504 ACTTTTTATTGATCGCCGAACTGT 59.545 37.500 0.00 0.00 0.00 3.55
205 206 4.335082 TTTTATTGATCGCCGAACTGTG 57.665 40.909 0.00 0.00 0.00 3.66
206 207 1.934589 TATTGATCGCCGAACTGTGG 58.065 50.000 0.00 0.00 0.00 4.17
213 214 3.343972 CCGAACTGTGGCAAGGTG 58.656 61.111 0.00 0.00 0.00 4.00
214 215 1.227823 CCGAACTGTGGCAAGGTGA 60.228 57.895 0.00 0.00 0.00 4.02
215 216 0.606401 CCGAACTGTGGCAAGGTGAT 60.606 55.000 0.00 0.00 0.00 3.06
216 217 0.798776 CGAACTGTGGCAAGGTGATC 59.201 55.000 0.00 0.00 0.00 2.92
217 218 0.798776 GAACTGTGGCAAGGTGATCG 59.201 55.000 0.00 0.00 0.00 3.69
218 219 1.237285 AACTGTGGCAAGGTGATCGC 61.237 55.000 0.00 0.00 0.00 4.58
219 220 2.359850 TGTGGCAAGGTGATCGCC 60.360 61.111 18.01 18.01 46.43 5.54
222 223 2.203070 GGCAAGGTGATCGCCGAT 60.203 61.111 19.45 10.07 35.79 4.18
223 224 2.247437 GGCAAGGTGATCGCCGATC 61.247 63.158 19.83 19.83 39.31 3.69
224 225 2.589492 GCAAGGTGATCGCCGATCG 61.589 63.158 21.00 8.51 41.51 3.69
225 226 2.279517 AAGGTGATCGCCGATCGC 60.280 61.111 27.71 27.71 45.50 4.58
228 229 4.624117 GTGATCGCCGATCGCCGA 62.624 66.667 23.87 23.87 41.90 5.54
229 230 4.328231 TGATCGCCGATCGCCGAG 62.328 66.667 25.48 7.98 41.51 4.63
230 231 4.026661 GATCGCCGATCGCCGAGA 62.027 66.667 25.48 13.13 41.76 4.04
231 232 4.329697 ATCGCCGATCGCCGAGAC 62.330 66.667 25.48 2.34 41.76 3.36
233 234 4.554363 CGCCGATCGCCGAGACTT 62.554 66.667 13.96 0.00 41.76 3.01
234 235 2.202756 GCCGATCGCCGAGACTTT 60.203 61.111 10.32 0.00 41.76 2.66
235 236 1.810030 GCCGATCGCCGAGACTTTT 60.810 57.895 10.32 0.00 41.76 2.27
236 237 1.999051 CCGATCGCCGAGACTTTTG 59.001 57.895 10.32 0.00 41.76 2.44
237 238 0.736325 CCGATCGCCGAGACTTTTGT 60.736 55.000 10.32 0.00 41.76 2.83
238 239 0.366871 CGATCGCCGAGACTTTTGTG 59.633 55.000 0.26 0.00 41.76 3.33
239 240 0.721718 GATCGCCGAGACTTTTGTGG 59.278 55.000 0.00 0.00 0.00 4.17
240 241 1.298859 ATCGCCGAGACTTTTGTGGC 61.299 55.000 0.00 0.00 42.29 5.01
241 242 2.556287 GCCGAGACTTTTGTGGCG 59.444 61.111 0.00 0.00 35.77 5.69
242 243 2.556287 CCGAGACTTTTGTGGCGC 59.444 61.111 0.00 0.00 0.00 6.53
243 244 1.961277 CCGAGACTTTTGTGGCGCT 60.961 57.895 7.64 0.00 0.00 5.92
244 245 1.205064 CGAGACTTTTGTGGCGCTG 59.795 57.895 7.64 0.00 0.00 5.18
245 246 1.221466 CGAGACTTTTGTGGCGCTGA 61.221 55.000 7.64 0.00 0.00 4.26
246 247 1.160137 GAGACTTTTGTGGCGCTGAT 58.840 50.000 7.64 0.00 0.00 2.90
247 248 1.129437 GAGACTTTTGTGGCGCTGATC 59.871 52.381 7.64 0.00 0.00 2.92
248 249 0.179215 GACTTTTGTGGCGCTGATCG 60.179 55.000 7.64 0.00 42.12 3.69
257 258 3.257561 CGCTGATCGCCGGACTTG 61.258 66.667 5.05 0.00 34.21 3.16
258 259 2.125512 GCTGATCGCCGGACTTGT 60.126 61.111 5.05 0.00 0.00 3.16
259 260 2.456119 GCTGATCGCCGGACTTGTG 61.456 63.158 5.05 0.00 0.00 3.33
260 261 1.811266 CTGATCGCCGGACTTGTGG 60.811 63.158 5.05 0.00 0.00 4.17
265 266 3.284449 GCCGGACTTGTGGCGTTT 61.284 61.111 5.05 0.00 42.22 3.60
266 267 2.841160 GCCGGACTTGTGGCGTTTT 61.841 57.895 5.05 0.00 42.22 2.43
267 268 1.731093 CCGGACTTGTGGCGTTTTT 59.269 52.632 0.00 0.00 0.00 1.94
284 285 3.905493 TTTTTGGGTAGTGGGAATGGA 57.095 42.857 0.00 0.00 0.00 3.41
285 286 2.891191 TTTGGGTAGTGGGAATGGAC 57.109 50.000 0.00 0.00 0.00 4.02
286 287 0.996583 TTGGGTAGTGGGAATGGACC 59.003 55.000 0.00 0.00 0.00 4.46
287 288 0.178858 TGGGTAGTGGGAATGGACCA 60.179 55.000 0.00 0.00 35.14 4.02
288 289 0.996583 GGGTAGTGGGAATGGACCAA 59.003 55.000 0.00 0.00 40.24 3.67
289 290 1.064685 GGGTAGTGGGAATGGACCAAG 60.065 57.143 0.00 0.00 40.24 3.61
290 291 1.633945 GGTAGTGGGAATGGACCAAGT 59.366 52.381 0.00 0.00 40.24 3.16
291 292 2.041216 GGTAGTGGGAATGGACCAAGTT 59.959 50.000 0.00 0.00 40.24 2.66
292 293 3.499745 GGTAGTGGGAATGGACCAAGTTT 60.500 47.826 0.00 0.00 40.24 2.66
293 294 2.597455 AGTGGGAATGGACCAAGTTTG 58.403 47.619 0.00 0.00 40.24 2.93
294 295 2.176798 AGTGGGAATGGACCAAGTTTGA 59.823 45.455 0.00 0.00 40.24 2.69
295 296 2.962421 GTGGGAATGGACCAAGTTTGAA 59.038 45.455 0.00 0.00 40.24 2.69
296 297 3.578282 GTGGGAATGGACCAAGTTTGAAT 59.422 43.478 0.00 0.00 40.24 2.57
297 298 4.040339 GTGGGAATGGACCAAGTTTGAATT 59.960 41.667 0.00 0.00 40.24 2.17
298 299 4.657969 TGGGAATGGACCAAGTTTGAATTT 59.342 37.500 0.00 0.00 34.44 1.82
299 300 5.841237 TGGGAATGGACCAAGTTTGAATTTA 59.159 36.000 0.00 0.00 34.44 1.40
300 301 6.163476 GGGAATGGACCAAGTTTGAATTTAC 58.837 40.000 0.00 0.00 0.00 2.01
301 302 5.861787 GGAATGGACCAAGTTTGAATTTACG 59.138 40.000 0.00 0.00 0.00 3.18
302 303 6.294286 GGAATGGACCAAGTTTGAATTTACGA 60.294 38.462 0.00 0.00 0.00 3.43
303 304 5.427036 TGGACCAAGTTTGAATTTACGAC 57.573 39.130 0.00 0.00 0.00 4.34
304 305 4.024725 TGGACCAAGTTTGAATTTACGACG 60.025 41.667 0.00 0.00 0.00 5.12
305 306 3.880610 ACCAAGTTTGAATTTACGACGC 58.119 40.909 0.00 0.00 0.00 5.19
306 307 3.231160 CCAAGTTTGAATTTACGACGCC 58.769 45.455 0.00 0.00 0.00 5.68
307 308 3.058501 CCAAGTTTGAATTTACGACGCCT 60.059 43.478 0.00 0.00 0.00 5.52
308 309 4.533222 CAAGTTTGAATTTACGACGCCTT 58.467 39.130 0.00 0.00 0.00 4.35
309 310 4.141855 AGTTTGAATTTACGACGCCTTG 57.858 40.909 0.00 0.00 0.00 3.61
310 311 3.058501 AGTTTGAATTTACGACGCCTTGG 60.059 43.478 0.00 0.00 0.00 3.61
311 312 1.444836 TGAATTTACGACGCCTTGGG 58.555 50.000 0.00 0.00 0.00 4.12
312 313 0.730840 GAATTTACGACGCCTTGGGG 59.269 55.000 0.00 1.99 0.00 4.96
313 314 0.678684 AATTTACGACGCCTTGGGGG 60.679 55.000 8.56 2.83 41.67 5.40
341 342 3.712907 GGGCGTGGCTGGAACCTA 61.713 66.667 0.00 0.00 0.00 3.08
342 343 2.125106 GGCGTGGCTGGAACCTAG 60.125 66.667 0.00 0.00 0.00 3.02
343 344 2.656069 GGCGTGGCTGGAACCTAGA 61.656 63.158 0.00 0.00 0.00 2.43
344 345 1.522569 GCGTGGCTGGAACCTAGAT 59.477 57.895 0.00 0.00 0.00 1.98
345 346 0.530870 GCGTGGCTGGAACCTAGATC 60.531 60.000 0.00 0.00 0.00 2.75
346 347 0.249073 CGTGGCTGGAACCTAGATCG 60.249 60.000 0.00 0.00 0.00 3.69
347 348 0.530870 GTGGCTGGAACCTAGATCGC 60.531 60.000 0.00 0.00 0.00 4.58
348 349 1.069935 GGCTGGAACCTAGATCGCC 59.930 63.158 0.00 0.00 0.00 5.54
349 350 1.069935 GCTGGAACCTAGATCGCCC 59.930 63.158 0.00 0.00 0.00 6.13
350 351 1.749033 CTGGAACCTAGATCGCCCC 59.251 63.158 0.00 0.00 0.00 5.80
351 352 0.760945 CTGGAACCTAGATCGCCCCT 60.761 60.000 0.00 0.00 0.00 4.79
352 353 0.559205 TGGAACCTAGATCGCCCCTA 59.441 55.000 0.00 0.00 0.00 3.53
353 354 1.258676 GGAACCTAGATCGCCCCTAG 58.741 60.000 0.00 0.00 34.77 3.02
355 356 4.443934 CCTAGATCGCCCCTAGGG 57.556 66.667 22.25 22.25 45.98 3.53
367 368 2.945456 CCCCTAGGGCCTAAAAATCAC 58.055 52.381 23.84 0.00 35.35 3.06
368 369 2.424379 CCCCTAGGGCCTAAAAATCACC 60.424 54.545 23.84 0.00 35.35 4.02
369 370 2.572290 CCTAGGGCCTAAAAATCACCG 58.428 52.381 15.43 0.00 0.00 4.94
370 371 2.572290 CTAGGGCCTAAAAATCACCGG 58.428 52.381 15.43 0.00 0.00 5.28
371 372 0.996583 AGGGCCTAAAAATCACCGGA 59.003 50.000 9.46 0.00 0.00 5.14
372 373 1.100510 GGGCCTAAAAATCACCGGAC 58.899 55.000 9.46 0.00 0.00 4.79
373 374 0.730840 GGCCTAAAAATCACCGGACG 59.269 55.000 9.46 0.00 0.00 4.79
374 375 1.676615 GGCCTAAAAATCACCGGACGA 60.677 52.381 9.46 4.22 0.00 4.20
375 376 1.664151 GCCTAAAAATCACCGGACGAG 59.336 52.381 9.46 0.00 0.00 4.18
376 377 1.664151 CCTAAAAATCACCGGACGAGC 59.336 52.381 9.46 0.00 0.00 5.03
377 378 1.323534 CTAAAAATCACCGGACGAGCG 59.676 52.381 9.46 0.00 0.00 5.03
378 379 0.601841 AAAAATCACCGGACGAGCGT 60.602 50.000 9.46 0.00 0.00 5.07
379 380 1.012486 AAAATCACCGGACGAGCGTC 61.012 55.000 9.46 14.17 43.87 5.19
388 389 3.618774 GACGAGCGTCCGAAATAGT 57.381 52.632 11.70 0.00 39.08 2.12
389 390 1.189403 GACGAGCGTCCGAAATAGTG 58.811 55.000 11.70 0.00 39.08 2.74
390 391 0.524862 ACGAGCGTCCGAAATAGTGT 59.475 50.000 5.65 0.00 0.00 3.55
391 392 1.189403 CGAGCGTCCGAAATAGTGTC 58.811 55.000 0.00 0.00 0.00 3.67
392 393 1.189403 GAGCGTCCGAAATAGTGTCG 58.811 55.000 0.00 0.00 38.24 4.35
730 731 4.606457 CGAGTGGAATTGCTCTAAAAGG 57.394 45.455 1.22 0.00 0.00 3.11
731 732 3.181506 CGAGTGGAATTGCTCTAAAAGGC 60.182 47.826 1.22 0.00 0.00 4.35
732 733 4.013050 GAGTGGAATTGCTCTAAAAGGCT 58.987 43.478 1.22 0.00 0.00 4.58
733 734 4.013050 AGTGGAATTGCTCTAAAAGGCTC 58.987 43.478 0.00 0.00 0.00 4.70
734 735 3.758554 GTGGAATTGCTCTAAAAGGCTCA 59.241 43.478 0.00 0.00 0.00 4.26
735 736 4.400567 GTGGAATTGCTCTAAAAGGCTCAT 59.599 41.667 0.00 0.00 0.00 2.90
736 737 4.641989 TGGAATTGCTCTAAAAGGCTCATC 59.358 41.667 0.00 0.00 0.00 2.92
737 738 4.037327 GGAATTGCTCTAAAAGGCTCATCC 59.963 45.833 0.00 0.00 0.00 3.51
739 740 5.636903 ATTGCTCTAAAAGGCTCATCCTA 57.363 39.130 0.00 0.00 46.94 2.94
740 741 5.636903 TTGCTCTAAAAGGCTCATCCTAT 57.363 39.130 0.00 0.00 46.94 2.57
741 742 6.747414 TTGCTCTAAAAGGCTCATCCTATA 57.253 37.500 0.00 0.00 46.94 1.31
742 743 6.102897 TGCTCTAAAAGGCTCATCCTATAC 57.897 41.667 0.00 0.00 46.94 1.47
743 744 5.841237 TGCTCTAAAAGGCTCATCCTATACT 59.159 40.000 0.00 0.00 46.94 2.12
744 745 7.010771 TGCTCTAAAAGGCTCATCCTATACTA 58.989 38.462 0.00 0.00 46.94 1.82
745 746 7.177568 TGCTCTAAAAGGCTCATCCTATACTAG 59.822 40.741 0.00 0.00 46.94 2.57
746 747 7.177744 GCTCTAAAAGGCTCATCCTATACTAGT 59.822 40.741 0.00 0.00 46.94 2.57
747 748 8.638629 TCTAAAAGGCTCATCCTATACTAGTC 57.361 38.462 0.00 0.00 46.94 2.59
748 749 8.449625 TCTAAAAGGCTCATCCTATACTAGTCT 58.550 37.037 0.00 0.00 46.94 3.24
749 750 7.533289 AAAAGGCTCATCCTATACTAGTCTC 57.467 40.000 0.00 0.00 46.94 3.36
750 751 5.187621 AGGCTCATCCTATACTAGTCTCC 57.812 47.826 0.00 0.00 45.41 3.71
751 752 4.017867 AGGCTCATCCTATACTAGTCTCCC 60.018 50.000 0.00 0.00 45.41 4.30
752 753 4.274978 GCTCATCCTATACTAGTCTCCCC 58.725 52.174 0.00 0.00 0.00 4.81
753 754 4.862371 CTCATCCTATACTAGTCTCCCCC 58.138 52.174 0.00 0.00 0.00 5.40
754 755 3.266254 TCATCCTATACTAGTCTCCCCCG 59.734 52.174 0.00 0.00 0.00 5.73
755 756 2.995746 TCCTATACTAGTCTCCCCCGA 58.004 52.381 0.00 0.00 0.00 5.14
756 757 2.911636 TCCTATACTAGTCTCCCCCGAG 59.088 54.545 0.00 0.00 37.48 4.63
757 758 2.026075 CCTATACTAGTCTCCCCCGAGG 60.026 59.091 0.00 0.00 36.70 4.63
800 801 3.300009 GTTGTTTCATCGTTGGAGCAAG 58.700 45.455 4.46 0.00 32.81 4.01
801 802 2.571212 TGTTTCATCGTTGGAGCAAGT 58.429 42.857 0.00 0.00 0.00 3.16
802 803 2.290367 TGTTTCATCGTTGGAGCAAGTG 59.710 45.455 0.00 0.00 0.00 3.16
807 808 2.991540 GTTGGAGCAAGTGGGGCC 60.992 66.667 0.00 0.00 0.00 5.80
825 826 4.142026 GGGGCCGTATAAGCAAAGAAAATT 60.142 41.667 0.00 0.00 0.00 1.82
875 877 2.354188 GGTGTTTTGGCGCGAACC 60.354 61.111 12.10 2.07 0.00 3.62
931 933 3.443045 CCCGCCAACATCCAGCAC 61.443 66.667 0.00 0.00 0.00 4.40
935 937 0.664166 CGCCAACATCCAGCACAAAC 60.664 55.000 0.00 0.00 0.00 2.93
943 945 2.281761 CAGCACAAACCCTCGCCT 60.282 61.111 0.00 0.00 0.00 5.52
944 946 2.032681 AGCACAAACCCTCGCCTC 59.967 61.111 0.00 0.00 0.00 4.70
946 948 2.750350 CACAAACCCTCGCCTCCT 59.250 61.111 0.00 0.00 0.00 3.69
947 949 1.980052 CACAAACCCTCGCCTCCTA 59.020 57.895 0.00 0.00 0.00 2.94
948 950 0.541863 CACAAACCCTCGCCTCCTAT 59.458 55.000 0.00 0.00 0.00 2.57
966 972 1.455822 ATCGATCTCTCTCCTCCCCT 58.544 55.000 0.00 0.00 0.00 4.79
972 978 0.106217 CTCTCTCCTCCCCTCTGTCC 60.106 65.000 0.00 0.00 0.00 4.02
981 987 1.616327 CCCTCTGTCCCCACATCCA 60.616 63.158 0.00 0.00 0.00 3.41
1011 1017 2.896854 GCGGCGATGCAGATCCAA 60.897 61.111 12.98 0.00 34.15 3.53
1173 1179 0.961753 CTTCCAAGGCAAGAACCACC 59.038 55.000 0.00 0.00 0.00 4.61
1189 1195 0.394352 CACCAACCCTCCCTGCATAC 60.394 60.000 0.00 0.00 0.00 2.39
1311 1317 1.349357 GTGACTCTCAAGAAGCCCCTT 59.651 52.381 0.00 0.00 0.00 3.95
1344 1350 2.841442 AGAAGAAGAACGACAAGGGG 57.159 50.000 0.00 0.00 0.00 4.79
1345 1351 2.326428 AGAAGAAGAACGACAAGGGGA 58.674 47.619 0.00 0.00 0.00 4.81
1347 1353 2.545537 AGAAGAACGACAAGGGGAAC 57.454 50.000 0.00 0.00 0.00 3.62
1373 1379 1.816863 GAGCTCGGACAAGGTGGACA 61.817 60.000 0.00 0.00 0.00 4.02
1374 1380 1.374758 GCTCGGACAAGGTGGACAG 60.375 63.158 0.00 0.00 0.00 3.51
1375 1381 1.293498 CTCGGACAAGGTGGACAGG 59.707 63.158 0.00 0.00 0.00 4.00
1410 1416 0.548682 AGGTGGAGCTGGAGGTGATT 60.549 55.000 0.00 0.00 0.00 2.57
1477 1483 4.363999 CCTCATCTCAAGTAATCACCGAC 58.636 47.826 0.00 0.00 0.00 4.79
1525 1531 1.081041 CACGGTGTCGGTGATTCGA 60.081 57.895 0.00 0.00 41.39 3.71
1526 1532 0.665068 CACGGTGTCGGTGATTCGAA 60.665 55.000 0.00 0.00 41.05 3.71
1527 1533 0.388134 ACGGTGTCGGTGATTCGAAG 60.388 55.000 3.35 0.00 41.05 3.79
1528 1534 0.388134 CGGTGTCGGTGATTCGAAGT 60.388 55.000 3.35 0.00 41.05 3.01
1546 1552 4.452455 CGAAGTAGAAACTTTGCTGATGGT 59.548 41.667 0.00 0.00 46.09 3.55
1751 1760 4.221703 AGTTAGTGGTCACATCTTCCTCTG 59.778 45.833 3.82 0.00 0.00 3.35
1756 1765 2.559440 GTCACATCTTCCTCTGCCATC 58.441 52.381 0.00 0.00 0.00 3.51
1793 1802 6.421801 GCCGTACGTATACCAGTATGAATTTT 59.578 38.462 15.21 0.00 39.69 1.82
1836 1845 7.376866 CACTAGTGACAAATTAGCACAAACTTG 59.623 37.037 18.45 0.00 35.08 3.16
1936 1948 7.283127 GGTTCATTTTGCATATCTCCTGACTTA 59.717 37.037 0.00 0.00 0.00 2.24
1947 1959 8.916062 CATATCTCCTGACTTATGCATCTAGAT 58.084 37.037 0.19 0.00 0.00 1.98
1983 2049 9.716507 ATGCAGTATAATTTATCGTGTTTGAAC 57.283 29.630 0.00 0.00 0.00 3.18
1985 2051 9.769093 GCAGTATAATTTATCGTGTTTGAACTT 57.231 29.630 0.00 0.00 0.00 2.66
1991 2057 7.623268 ATTTATCGTGTTTGAACTTTGAAGC 57.377 32.000 0.00 0.00 0.00 3.86
1992 2058 4.630894 ATCGTGTTTGAACTTTGAAGCA 57.369 36.364 0.00 0.00 0.00 3.91
1993 2059 4.630894 TCGTGTTTGAACTTTGAAGCAT 57.369 36.364 0.00 0.00 0.00 3.79
2003 2069 6.170506 TGAACTTTGAAGCATAAGATACGGT 58.829 36.000 0.00 0.00 0.00 4.83
2032 2098 4.082625 TCGAAGCAATTAACCGTGACTAGA 60.083 41.667 0.00 0.00 0.00 2.43
2066 2132 6.787085 AACAAGAAACACATAGACAGTAGC 57.213 37.500 0.00 0.00 0.00 3.58
2106 2172 2.073816 CGTGGTGGTGGTTAAGATCAC 58.926 52.381 0.00 0.00 0.00 3.06
2112 2178 3.598019 GGTGGTTAAGATCACACCGTA 57.402 47.619 0.00 0.00 43.28 4.02
2128 2194 0.814010 CGTATAACCCTGGCAGCCAC 60.814 60.000 11.22 0.00 0.00 5.01
2129 2195 0.546598 GTATAACCCTGGCAGCCACT 59.453 55.000 11.22 0.00 0.00 4.00
2140 2206 0.675633 GCAGCCACTTGGTCATGTTT 59.324 50.000 0.00 0.00 37.57 2.83
2145 2211 3.758554 AGCCACTTGGTCATGTTTATGTC 59.241 43.478 0.00 0.00 37.57 3.06
2156 2222 3.683365 TGTTTATGTCTCAGAGCAGCA 57.317 42.857 0.00 0.00 0.00 4.41
2157 2223 4.212143 TGTTTATGTCTCAGAGCAGCAT 57.788 40.909 0.00 0.37 0.00 3.79
2308 2632 1.133025 GACCAAATCTGCGGGAACATG 59.867 52.381 0.00 0.00 0.00 3.21
2309 2633 1.176527 CCAAATCTGCGGGAACATGT 58.823 50.000 0.00 0.00 0.00 3.21
2310 2634 1.545582 CCAAATCTGCGGGAACATGTT 59.454 47.619 11.78 11.78 0.00 2.71
2311 2635 2.752354 CCAAATCTGCGGGAACATGTTA 59.248 45.455 11.95 0.00 0.00 2.41
2312 2636 3.181497 CCAAATCTGCGGGAACATGTTAG 60.181 47.826 11.95 4.98 0.00 2.34
2313 2637 3.350219 AATCTGCGGGAACATGTTAGT 57.650 42.857 11.95 0.00 0.00 2.24
2326 2650 4.980573 ACATGTTAGTTGCTAGGTCCAAA 58.019 39.130 0.00 0.00 0.00 3.28
2381 2706 4.980573 AGCAGTGGTTTTATAACAGGACA 58.019 39.130 0.00 0.00 35.92 4.02
2396 2721 4.632153 ACAGGACACAAGACACATACTTC 58.368 43.478 0.00 0.00 0.00 3.01
2404 2729 5.469760 CACAAGACACATACTTCACCATGAA 59.530 40.000 0.00 0.00 34.79 2.57
2407 2732 6.560253 AGACACATACTTCACCATGAAAAC 57.440 37.500 0.00 0.00 35.73 2.43
2409 2734 6.205464 AGACACATACTTCACCATGAAAACTG 59.795 38.462 0.00 0.00 35.73 3.16
2412 2737 5.833131 ACATACTTCACCATGAAAACTGGTT 59.167 36.000 0.00 0.00 44.67 3.67
2421 2746 7.507616 TCACCATGAAAACTGGTTTAAAGGTAT 59.492 33.333 2.23 0.00 44.67 2.73
2433 2758 8.857694 TGGTTTAAAGGTATTTGAAGGACTAG 57.142 34.615 0.00 0.00 0.00 2.57
2469 2794 5.946972 TCAAATCCGAACAATTAAGGCCTTA 59.053 36.000 21.68 21.68 0.00 2.69
2497 2822 2.185867 GGCGCCCATGTCGTCTTA 59.814 61.111 18.11 0.00 0.00 2.10
2498 2823 2.171725 GGCGCCCATGTCGTCTTAC 61.172 63.158 18.11 0.00 0.00 2.34
2499 2824 1.447140 GCGCCCATGTCGTCTTACA 60.447 57.895 0.00 0.00 0.00 2.41
2501 2826 1.082117 CGCCCATGTCGTCTTACACC 61.082 60.000 0.00 0.00 30.75 4.16
2502 2827 0.743345 GCCCATGTCGTCTTACACCC 60.743 60.000 0.00 0.00 30.75 4.61
2503 2828 0.611200 CCCATGTCGTCTTACACCCA 59.389 55.000 0.00 0.00 30.75 4.51
2506 2831 3.142951 CCATGTCGTCTTACACCCAAAA 58.857 45.455 0.00 0.00 30.75 2.44
2507 2832 3.188460 CCATGTCGTCTTACACCCAAAAG 59.812 47.826 0.00 0.00 30.75 2.27
2540 2866 4.579384 CACCGTTGGGGGCACAGT 62.579 66.667 0.00 0.00 41.60 3.55
2541 2867 4.265056 ACCGTTGGGGGCACAGTC 62.265 66.667 0.00 0.00 41.60 3.51
2544 2870 4.265056 GTTGGGGGCACAGTCCGT 62.265 66.667 0.00 0.00 0.00 4.69
2545 2871 3.494254 TTGGGGGCACAGTCCGTT 61.494 61.111 0.00 0.00 0.00 4.44
2546 2872 3.485346 TTGGGGGCACAGTCCGTTC 62.485 63.158 0.00 0.00 0.00 3.95
2547 2873 4.717313 GGGGGCACAGTCCGTTCC 62.717 72.222 0.00 0.00 0.00 3.62
2548 2874 3.637273 GGGGCACAGTCCGTTCCT 61.637 66.667 0.00 0.00 30.51 3.36
2549 2875 2.047179 GGGCACAGTCCGTTCCTC 60.047 66.667 0.00 0.00 30.51 3.71
2550 2876 2.432628 GGCACAGTCCGTTCCTCG 60.433 66.667 0.00 0.00 39.52 4.63
2551 2877 2.338984 GCACAGTCCGTTCCTCGT 59.661 61.111 0.00 0.00 37.94 4.18
2552 2878 1.733399 GCACAGTCCGTTCCTCGTC 60.733 63.158 0.00 0.00 37.94 4.20
2553 2879 1.442184 CACAGTCCGTTCCTCGTCG 60.442 63.158 0.00 0.00 37.94 5.12
2554 2880 2.504244 CAGTCCGTTCCTCGTCGC 60.504 66.667 0.00 0.00 37.94 5.19
2555 2881 2.981909 AGTCCGTTCCTCGTCGCA 60.982 61.111 0.00 0.00 37.94 5.10
2596 2922 1.492993 AAAGAGGCCAGAGACCACCC 61.493 60.000 5.01 0.00 0.00 4.61
2600 2926 2.439156 GCCAGAGACCACCCATGC 60.439 66.667 0.00 0.00 0.00 4.06
2601 2927 2.976490 GCCAGAGACCACCCATGCT 61.976 63.158 0.00 0.00 0.00 3.79
2602 2928 1.626356 GCCAGAGACCACCCATGCTA 61.626 60.000 0.00 0.00 0.00 3.49
2603 2929 1.135094 CCAGAGACCACCCATGCTAT 58.865 55.000 0.00 0.00 0.00 2.97
2604 2930 1.202734 CCAGAGACCACCCATGCTATG 60.203 57.143 0.00 0.00 0.00 2.23
2605 2931 0.471617 AGAGACCACCCATGCTATGC 59.528 55.000 0.00 0.00 0.00 3.14
2606 2932 0.181114 GAGACCACCCATGCTATGCA 59.819 55.000 0.00 0.00 44.86 3.96
2607 2933 0.182061 AGACCACCCATGCTATGCAG 59.818 55.000 0.00 0.00 43.65 4.41
2608 2934 0.107017 GACCACCCATGCTATGCAGT 60.107 55.000 0.00 0.00 43.65 4.40
2609 2935 0.394762 ACCACCCATGCTATGCAGTG 60.395 55.000 0.00 1.52 43.65 3.66
2610 2936 1.105167 CCACCCATGCTATGCAGTGG 61.105 60.000 12.67 12.67 43.65 4.00
2611 2937 1.454479 ACCCATGCTATGCAGTGGC 60.454 57.895 12.30 0.00 43.65 5.01
2612 2938 2.549198 CCCATGCTATGCAGTGGCG 61.549 63.158 12.30 0.00 43.65 5.69
2613 2939 2.549198 CCATGCTATGCAGTGGCGG 61.549 63.158 0.00 0.00 43.65 6.13
2614 2940 2.903855 ATGCTATGCAGTGGCGGC 60.904 61.111 0.00 0.00 43.65 6.53
2615 2941 3.411114 ATGCTATGCAGTGGCGGCT 62.411 57.895 11.43 0.00 43.65 5.52
2616 2942 3.580193 GCTATGCAGTGGCGGCTG 61.580 66.667 11.43 1.49 45.35 4.85
2617 2943 2.898840 CTATGCAGTGGCGGCTGG 60.899 66.667 11.43 0.14 45.35 4.85
2618 2944 3.390183 CTATGCAGTGGCGGCTGGA 62.390 63.158 11.43 2.08 45.35 3.86
2619 2945 3.680620 TATGCAGTGGCGGCTGGAC 62.681 63.158 11.43 0.00 45.35 4.02
2630 2956 4.400961 GCTGGACGAGGCTTGCCT 62.401 66.667 14.69 14.69 0.00 4.75
2631 2957 2.435586 CTGGACGAGGCTTGCCTG 60.436 66.667 19.84 13.16 0.00 4.85
2632 2958 4.704833 TGGACGAGGCTTGCCTGC 62.705 66.667 19.84 9.56 0.00 4.85
2633 2959 4.400961 GGACGAGGCTTGCCTGCT 62.401 66.667 19.84 3.06 0.00 4.24
2634 2960 2.817396 GACGAGGCTTGCCTGCTC 60.817 66.667 19.84 8.92 0.00 4.26
2635 2961 4.400961 ACGAGGCTTGCCTGCTCC 62.401 66.667 19.84 3.46 0.00 4.70
2637 2963 3.726144 GAGGCTTGCCTGCTCCCT 61.726 66.667 19.84 0.00 0.00 4.20
2638 2964 3.695747 GAGGCTTGCCTGCTCCCTC 62.696 68.421 19.84 0.00 35.75 4.30
2640 2966 4.087892 GCTTGCCTGCTCCCTCGA 62.088 66.667 0.00 0.00 0.00 4.04
2641 2967 2.186384 CTTGCCTGCTCCCTCGAG 59.814 66.667 5.13 5.13 39.33 4.04
2642 2968 3.382803 CTTGCCTGCTCCCTCGAGG 62.383 68.421 25.36 25.36 36.55 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.838152 TCATCGCTCGGGCTTGGC 62.838 66.667 5.36 0.00 36.09 4.52
35 36 2.109799 ATCATCGCTCGGGCTTGG 59.890 61.111 5.36 0.00 36.09 3.61
36 37 2.890109 GCATCATCGCTCGGGCTTG 61.890 63.158 5.36 2.75 36.09 4.01
37 38 2.590007 GCATCATCGCTCGGGCTT 60.590 61.111 5.36 0.00 36.09 4.35
38 39 4.615815 GGCATCATCGCTCGGGCT 62.616 66.667 5.36 0.00 36.09 5.19
39 40 4.615815 AGGCATCATCGCTCGGGC 62.616 66.667 0.00 0.00 0.00 6.13
40 41 2.356793 GAGGCATCATCGCTCGGG 60.357 66.667 0.00 0.00 0.00 5.14
41 42 2.356793 GGAGGCATCATCGCTCGG 60.357 66.667 0.00 0.00 0.00 4.63
42 43 1.005275 ATGGAGGCATCATCGCTCG 60.005 57.895 0.00 0.00 0.00 5.03
43 44 0.034476 TCATGGAGGCATCATCGCTC 59.966 55.000 0.00 0.00 0.00 5.03
44 45 0.250209 GTCATGGAGGCATCATCGCT 60.250 55.000 0.00 0.00 0.00 4.93
45 46 0.533531 TGTCATGGAGGCATCATCGC 60.534 55.000 0.00 0.00 0.00 4.58
46 47 1.224075 GTGTCATGGAGGCATCATCG 58.776 55.000 0.00 0.00 32.25 3.84
47 48 1.602311 GGTGTCATGGAGGCATCATC 58.398 55.000 0.00 0.00 31.65 2.92
48 49 0.184451 GGGTGTCATGGAGGCATCAT 59.816 55.000 0.00 0.00 33.50 2.45
49 50 1.206811 TGGGTGTCATGGAGGCATCA 61.207 55.000 0.00 0.00 33.50 3.07
50 51 0.465097 CTGGGTGTCATGGAGGCATC 60.465 60.000 0.00 0.00 32.25 3.91
51 52 1.611419 CTGGGTGTCATGGAGGCAT 59.389 57.895 0.00 0.00 32.25 4.40
52 53 3.080641 CTGGGTGTCATGGAGGCA 58.919 61.111 0.00 0.00 0.00 4.75
53 54 2.439156 GCTGGGTGTCATGGAGGC 60.439 66.667 0.00 0.00 0.00 4.70
54 55 1.377725 GTGCTGGGTGTCATGGAGG 60.378 63.158 0.00 0.00 0.00 4.30
55 56 0.675837 CAGTGCTGGGTGTCATGGAG 60.676 60.000 0.00 0.00 0.00 3.86
56 57 1.126948 TCAGTGCTGGGTGTCATGGA 61.127 55.000 0.00 0.00 0.00 3.41
57 58 0.250858 TTCAGTGCTGGGTGTCATGG 60.251 55.000 0.00 0.00 0.00 3.66
58 59 1.162698 CTTCAGTGCTGGGTGTCATG 58.837 55.000 0.00 0.00 0.00 3.07
59 60 0.607489 GCTTCAGTGCTGGGTGTCAT 60.607 55.000 0.00 0.00 0.00 3.06
60 61 1.227943 GCTTCAGTGCTGGGTGTCA 60.228 57.895 0.00 0.00 0.00 3.58
61 62 1.968540 GGCTTCAGTGCTGGGTGTC 60.969 63.158 0.00 0.00 0.00 3.67
62 63 2.113986 GGCTTCAGTGCTGGGTGT 59.886 61.111 0.00 0.00 0.00 4.16
63 64 2.113774 TGGCTTCAGTGCTGGGTG 59.886 61.111 0.00 0.00 0.00 4.61
64 65 2.113986 GTGGCTTCAGTGCTGGGT 59.886 61.111 0.00 0.00 0.00 4.51
65 66 3.052082 CGTGGCTTCAGTGCTGGG 61.052 66.667 0.00 0.00 0.00 4.45
66 67 3.730761 GCGTGGCTTCAGTGCTGG 61.731 66.667 0.00 0.00 0.00 4.85
67 68 3.730761 GGCGTGGCTTCAGTGCTG 61.731 66.667 0.00 0.00 0.00 4.41
70 71 3.414700 GTCGGCGTGGCTTCAGTG 61.415 66.667 6.85 0.00 0.00 3.66
103 104 4.477975 GTCGGAGGAGTCGGCGTG 62.478 72.222 6.85 0.00 0.00 5.34
104 105 4.719106 AGTCGGAGGAGTCGGCGT 62.719 66.667 6.85 0.00 37.31 5.68
105 106 3.878519 GAGTCGGAGGAGTCGGCG 61.879 72.222 0.00 0.00 37.31 6.46
106 107 3.519930 GGAGTCGGAGGAGTCGGC 61.520 72.222 0.00 0.00 42.50 5.54
107 108 3.203412 CGGAGTCGGAGGAGTCGG 61.203 72.222 0.00 0.00 42.50 4.79
117 118 1.080705 GTGTCAACCTCCGGAGTCG 60.081 63.158 29.25 17.67 0.00 4.18
118 119 1.292541 GGTGTCAACCTCCGGAGTC 59.707 63.158 29.25 14.17 43.84 3.36
119 120 3.468063 GGTGTCAACCTCCGGAGT 58.532 61.111 29.25 15.06 43.84 3.85
128 129 2.035704 TGCATCAAATGGTGGTGTCAAC 59.964 45.455 0.00 0.00 40.83 3.18
129 130 2.314246 TGCATCAAATGGTGGTGTCAA 58.686 42.857 0.00 0.00 40.83 3.18
130 131 1.992538 TGCATCAAATGGTGGTGTCA 58.007 45.000 0.00 0.00 40.83 3.58
131 132 3.255725 CAATGCATCAAATGGTGGTGTC 58.744 45.455 0.00 0.00 40.83 3.67
132 133 2.613474 GCAATGCATCAAATGGTGGTGT 60.613 45.455 0.00 0.00 40.83 4.16
133 134 2.004017 GCAATGCATCAAATGGTGGTG 58.996 47.619 0.00 0.00 41.76 4.17
134 135 1.065998 GGCAATGCATCAAATGGTGGT 60.066 47.619 7.79 0.00 0.00 4.16
135 136 1.658994 GGCAATGCATCAAATGGTGG 58.341 50.000 7.79 0.00 0.00 4.61
136 137 1.135053 TCGGCAATGCATCAAATGGTG 60.135 47.619 7.79 0.00 0.00 4.17
137 138 1.135024 GTCGGCAATGCATCAAATGGT 60.135 47.619 7.79 0.00 0.00 3.55
138 139 1.563111 GTCGGCAATGCATCAAATGG 58.437 50.000 7.79 0.00 0.00 3.16
139 140 1.193644 CGTCGGCAATGCATCAAATG 58.806 50.000 7.79 0.00 0.00 2.32
140 141 0.526096 GCGTCGGCAATGCATCAAAT 60.526 50.000 7.79 0.00 39.85 2.32
141 142 1.154054 GCGTCGGCAATGCATCAAA 60.154 52.632 7.79 0.00 39.85 2.69
142 143 2.484662 GCGTCGGCAATGCATCAA 59.515 55.556 7.79 0.00 39.85 2.57
143 144 3.863543 CGCGTCGGCAATGCATCA 61.864 61.111 7.79 0.00 40.11 3.07
144 145 3.773649 GACGCGTCGGCAATGCATC 62.774 63.158 25.19 0.00 40.11 3.91
145 146 3.864686 GACGCGTCGGCAATGCAT 61.865 61.111 25.19 0.00 40.11 3.96
148 149 2.563086 GAAAGGACGCGTCGGCAATG 62.563 60.000 30.99 0.00 36.10 2.82
149 150 2.358247 AAAGGACGCGTCGGCAAT 60.358 55.556 30.99 13.65 36.10 3.56
150 151 2.981977 AAGAAAGGACGCGTCGGCAA 62.982 55.000 30.99 0.00 36.10 4.52
151 152 2.981977 AAAGAAAGGACGCGTCGGCA 62.982 55.000 30.99 0.00 36.10 5.69
152 153 1.838568 AAAAGAAAGGACGCGTCGGC 61.839 55.000 30.99 19.22 0.00 5.54
153 154 0.110823 CAAAAGAAAGGACGCGTCGG 60.111 55.000 30.99 9.17 0.00 4.79
154 155 0.721483 GCAAAAGAAAGGACGCGTCG 60.721 55.000 30.99 15.82 0.00 5.12
155 156 0.306533 TGCAAAAGAAAGGACGCGTC 59.693 50.000 30.67 30.67 0.00 5.19
156 157 0.028902 GTGCAAAAGAAAGGACGCGT 59.971 50.000 13.85 13.85 0.00 6.01
157 158 0.991770 CGTGCAAAAGAAAGGACGCG 60.992 55.000 3.53 3.53 42.26 6.01
158 159 2.783440 CGTGCAAAAGAAAGGACGC 58.217 52.632 0.00 0.00 42.26 5.19
160 161 0.660300 CGGCGTGCAAAAGAAAGGAC 60.660 55.000 0.00 0.00 0.00 3.85
161 162 0.816018 TCGGCGTGCAAAAGAAAGGA 60.816 50.000 6.85 0.00 0.00 3.36
162 163 0.030101 TTCGGCGTGCAAAAGAAAGG 59.970 50.000 6.85 0.00 0.00 3.11
163 164 1.120437 GTTCGGCGTGCAAAAGAAAG 58.880 50.000 6.85 0.00 0.00 2.62
164 165 0.736053 AGTTCGGCGTGCAAAAGAAA 59.264 45.000 6.85 0.00 0.00 2.52
165 166 0.736053 AAGTTCGGCGTGCAAAAGAA 59.264 45.000 6.85 0.00 0.00 2.52
166 167 0.736053 AAAGTTCGGCGTGCAAAAGA 59.264 45.000 6.85 0.00 0.00 2.52
167 168 1.555477 AAAAGTTCGGCGTGCAAAAG 58.445 45.000 6.85 0.00 0.00 2.27
168 169 1.997669 AAAAAGTTCGGCGTGCAAAA 58.002 40.000 6.85 0.00 0.00 2.44
169 170 2.846039 TAAAAAGTTCGGCGTGCAAA 57.154 40.000 6.85 0.00 0.00 3.68
170 171 3.046390 CAATAAAAAGTTCGGCGTGCAA 58.954 40.909 6.85 0.00 0.00 4.08
171 172 2.290916 TCAATAAAAAGTTCGGCGTGCA 59.709 40.909 6.85 0.00 0.00 4.57
172 173 2.923643 TCAATAAAAAGTTCGGCGTGC 58.076 42.857 6.85 0.48 0.00 5.34
173 174 3.778718 CGATCAATAAAAAGTTCGGCGTG 59.221 43.478 6.85 0.00 0.00 5.34
174 175 3.726782 GCGATCAATAAAAAGTTCGGCGT 60.727 43.478 6.85 0.00 0.00 5.68
175 176 2.776225 GCGATCAATAAAAAGTTCGGCG 59.224 45.455 0.00 0.00 0.00 6.46
176 177 3.105937 GGCGATCAATAAAAAGTTCGGC 58.894 45.455 0.00 0.00 42.41 5.54
177 178 3.062909 TCGGCGATCAATAAAAAGTTCGG 59.937 43.478 4.99 0.00 0.00 4.30
178 179 4.253352 TCGGCGATCAATAAAAAGTTCG 57.747 40.909 4.99 0.00 0.00 3.95
179 180 5.508224 CAGTTCGGCGATCAATAAAAAGTTC 59.492 40.000 19.04 0.00 0.00 3.01
180 181 5.048991 ACAGTTCGGCGATCAATAAAAAGTT 60.049 36.000 19.04 0.00 0.00 2.66
181 182 4.454504 ACAGTTCGGCGATCAATAAAAAGT 59.545 37.500 19.04 0.00 0.00 2.66
182 183 4.788100 CACAGTTCGGCGATCAATAAAAAG 59.212 41.667 19.04 0.00 0.00 2.27
183 184 4.378978 CCACAGTTCGGCGATCAATAAAAA 60.379 41.667 19.04 0.00 0.00 1.94
184 185 3.126171 CCACAGTTCGGCGATCAATAAAA 59.874 43.478 19.04 0.00 0.00 1.52
185 186 2.675844 CCACAGTTCGGCGATCAATAAA 59.324 45.455 19.04 0.00 0.00 1.40
186 187 2.276201 CCACAGTTCGGCGATCAATAA 58.724 47.619 19.04 0.00 0.00 1.40
187 188 1.934589 CCACAGTTCGGCGATCAATA 58.065 50.000 19.04 0.00 0.00 1.90
188 189 1.369091 GCCACAGTTCGGCGATCAAT 61.369 55.000 19.04 4.66 40.35 2.57
189 190 2.032634 GCCACAGTTCGGCGATCAA 61.033 57.895 19.04 0.00 40.35 2.57
190 191 2.434185 GCCACAGTTCGGCGATCA 60.434 61.111 19.04 0.00 40.35 2.92
196 197 0.606401 ATCACCTTGCCACAGTTCGG 60.606 55.000 0.00 0.00 0.00 4.30
197 198 0.798776 GATCACCTTGCCACAGTTCG 59.201 55.000 0.00 0.00 0.00 3.95
198 199 0.798776 CGATCACCTTGCCACAGTTC 59.201 55.000 0.00 0.00 0.00 3.01
199 200 1.237285 GCGATCACCTTGCCACAGTT 61.237 55.000 0.00 0.00 0.00 3.16
200 201 1.672356 GCGATCACCTTGCCACAGT 60.672 57.895 0.00 0.00 0.00 3.55
201 202 3.181367 GCGATCACCTTGCCACAG 58.819 61.111 0.00 0.00 0.00 3.66
206 207 2.589492 CGATCGGCGATCACCTTGC 61.589 63.158 39.10 18.92 44.57 4.01
207 208 2.589492 GCGATCGGCGATCACCTTG 61.589 63.158 39.10 27.02 44.57 3.61
208 209 2.279517 GCGATCGGCGATCACCTT 60.280 61.111 39.10 14.26 44.57 3.50
209 210 4.286320 GGCGATCGGCGATCACCT 62.286 66.667 36.86 14.28 44.92 4.00
217 218 1.810030 AAAAGTCTCGGCGATCGGC 60.810 57.895 29.95 29.95 39.77 5.54
218 219 0.736325 ACAAAAGTCTCGGCGATCGG 60.736 55.000 18.30 0.00 39.77 4.18
219 220 0.366871 CACAAAAGTCTCGGCGATCG 59.633 55.000 11.27 11.69 40.90 3.69
220 221 0.721718 CCACAAAAGTCTCGGCGATC 59.278 55.000 11.27 7.11 0.00 3.69
221 222 1.298859 GCCACAAAAGTCTCGGCGAT 61.299 55.000 11.27 0.00 32.14 4.58
222 223 1.959226 GCCACAAAAGTCTCGGCGA 60.959 57.895 10.14 10.14 32.14 5.54
223 224 2.556287 GCCACAAAAGTCTCGGCG 59.444 61.111 0.00 0.00 32.14 6.46
224 225 2.556287 CGCCACAAAAGTCTCGGC 59.444 61.111 0.00 0.00 39.45 5.54
225 226 1.961277 AGCGCCACAAAAGTCTCGG 60.961 57.895 2.29 0.00 0.00 4.63
226 227 1.205064 CAGCGCCACAAAAGTCTCG 59.795 57.895 2.29 0.00 0.00 4.04
227 228 1.129437 GATCAGCGCCACAAAAGTCTC 59.871 52.381 2.29 0.00 0.00 3.36
228 229 1.160137 GATCAGCGCCACAAAAGTCT 58.840 50.000 2.29 0.00 0.00 3.24
229 230 0.179215 CGATCAGCGCCACAAAAGTC 60.179 55.000 2.29 0.00 0.00 3.01
230 231 1.868997 CGATCAGCGCCACAAAAGT 59.131 52.632 2.29 0.00 0.00 2.66
231 232 4.751539 CGATCAGCGCCACAAAAG 57.248 55.556 2.29 0.00 0.00 2.27
242 243 1.811266 CCACAAGTCCGGCGATCAG 60.811 63.158 9.30 0.00 0.00 2.90
243 244 2.264480 CCACAAGTCCGGCGATCA 59.736 61.111 9.30 0.00 0.00 2.92
244 245 3.195698 GCCACAAGTCCGGCGATC 61.196 66.667 9.30 0.00 38.82 3.69
248 249 2.344521 AAAAACGCCACAAGTCCGGC 62.345 55.000 0.00 0.00 45.28 6.13
249 250 1.731093 AAAAACGCCACAAGTCCGG 59.269 52.632 0.00 0.00 0.00 5.14
264 265 3.502356 GTCCATTCCCACTACCCAAAAA 58.498 45.455 0.00 0.00 0.00 1.94
265 266 2.225167 GGTCCATTCCCACTACCCAAAA 60.225 50.000 0.00 0.00 0.00 2.44
266 267 1.356398 GGTCCATTCCCACTACCCAAA 59.644 52.381 0.00 0.00 0.00 3.28
267 268 0.996583 GGTCCATTCCCACTACCCAA 59.003 55.000 0.00 0.00 0.00 4.12
268 269 0.178858 TGGTCCATTCCCACTACCCA 60.179 55.000 0.00 0.00 0.00 4.51
269 270 0.996583 TTGGTCCATTCCCACTACCC 59.003 55.000 0.00 0.00 0.00 3.69
270 271 1.633945 ACTTGGTCCATTCCCACTACC 59.366 52.381 0.00 0.00 0.00 3.18
271 272 3.434940 AACTTGGTCCATTCCCACTAC 57.565 47.619 0.00 0.00 0.00 2.73
272 273 3.396276 TCAAACTTGGTCCATTCCCACTA 59.604 43.478 0.00 0.00 0.00 2.74
273 274 2.176798 TCAAACTTGGTCCATTCCCACT 59.823 45.455 0.00 0.00 0.00 4.00
274 275 2.593026 TCAAACTTGGTCCATTCCCAC 58.407 47.619 0.00 0.00 0.00 4.61
275 276 3.320610 TTCAAACTTGGTCCATTCCCA 57.679 42.857 0.00 0.00 0.00 4.37
276 277 4.890158 AATTCAAACTTGGTCCATTCCC 57.110 40.909 0.00 0.00 0.00 3.97
277 278 5.861787 CGTAAATTCAAACTTGGTCCATTCC 59.138 40.000 0.00 0.00 0.00 3.01
278 279 6.581166 GTCGTAAATTCAAACTTGGTCCATTC 59.419 38.462 0.00 0.00 0.00 2.67
279 280 6.443792 GTCGTAAATTCAAACTTGGTCCATT 58.556 36.000 0.00 0.00 0.00 3.16
280 281 5.334569 CGTCGTAAATTCAAACTTGGTCCAT 60.335 40.000 0.00 0.00 0.00 3.41
281 282 4.024725 CGTCGTAAATTCAAACTTGGTCCA 60.025 41.667 0.00 0.00 0.00 4.02
282 283 4.460505 CGTCGTAAATTCAAACTTGGTCC 58.539 43.478 0.00 0.00 0.00 4.46
283 284 3.904234 GCGTCGTAAATTCAAACTTGGTC 59.096 43.478 0.00 0.00 0.00 4.02
284 285 3.304190 GGCGTCGTAAATTCAAACTTGGT 60.304 43.478 0.00 0.00 0.00 3.67
285 286 3.058501 AGGCGTCGTAAATTCAAACTTGG 60.059 43.478 0.00 0.00 0.00 3.61
286 287 4.141855 AGGCGTCGTAAATTCAAACTTG 57.858 40.909 0.00 0.00 0.00 3.16
287 288 4.533222 CAAGGCGTCGTAAATTCAAACTT 58.467 39.130 0.00 0.00 0.00 2.66
288 289 3.058501 CCAAGGCGTCGTAAATTCAAACT 60.059 43.478 0.00 0.00 0.00 2.66
289 290 3.231160 CCAAGGCGTCGTAAATTCAAAC 58.769 45.455 0.00 0.00 0.00 2.93
290 291 2.226912 CCCAAGGCGTCGTAAATTCAAA 59.773 45.455 0.00 0.00 0.00 2.69
291 292 1.807742 CCCAAGGCGTCGTAAATTCAA 59.192 47.619 0.00 0.00 0.00 2.69
292 293 1.444836 CCCAAGGCGTCGTAAATTCA 58.555 50.000 0.00 0.00 0.00 2.57
293 294 0.730840 CCCCAAGGCGTCGTAAATTC 59.269 55.000 0.00 0.00 0.00 2.17
294 295 0.678684 CCCCCAAGGCGTCGTAAATT 60.679 55.000 0.00 0.00 0.00 1.82
295 296 1.078001 CCCCCAAGGCGTCGTAAAT 60.078 57.895 0.00 0.00 0.00 1.40
296 297 2.348243 CCCCCAAGGCGTCGTAAA 59.652 61.111 0.00 0.00 0.00 2.01
324 325 3.682292 CTAGGTTCCAGCCACGCCC 62.682 68.421 0.00 0.00 0.00 6.13
325 326 1.972660 ATCTAGGTTCCAGCCACGCC 61.973 60.000 0.00 0.00 0.00 5.68
326 327 0.530870 GATCTAGGTTCCAGCCACGC 60.531 60.000 0.00 0.00 0.00 5.34
327 328 0.249073 CGATCTAGGTTCCAGCCACG 60.249 60.000 0.00 0.00 0.00 4.94
328 329 0.530870 GCGATCTAGGTTCCAGCCAC 60.531 60.000 0.00 0.00 0.00 5.01
329 330 1.686325 GGCGATCTAGGTTCCAGCCA 61.686 60.000 7.56 0.00 42.37 4.75
330 331 1.069935 GGCGATCTAGGTTCCAGCC 59.930 63.158 0.00 0.00 36.08 4.85
331 332 1.069935 GGGCGATCTAGGTTCCAGC 59.930 63.158 0.00 0.00 0.00 4.85
332 333 0.760945 AGGGGCGATCTAGGTTCCAG 60.761 60.000 0.00 0.00 0.00 3.86
333 334 0.559205 TAGGGGCGATCTAGGTTCCA 59.441 55.000 0.00 0.00 0.00 3.53
334 335 1.258676 CTAGGGGCGATCTAGGTTCC 58.741 60.000 0.00 0.00 32.69 3.62
335 336 1.258676 CCTAGGGGCGATCTAGGTTC 58.741 60.000 14.96 0.00 45.38 3.62
336 337 3.459386 CCTAGGGGCGATCTAGGTT 57.541 57.895 14.96 0.00 45.38 3.50
348 349 2.748465 CGGTGATTTTTAGGCCCTAGGG 60.748 54.545 24.89 24.89 38.57 3.53
349 350 2.572290 CGGTGATTTTTAGGCCCTAGG 58.428 52.381 0.06 0.06 0.00 3.02
350 351 2.171870 TCCGGTGATTTTTAGGCCCTAG 59.828 50.000 0.00 0.00 0.00 3.02
351 352 2.092807 GTCCGGTGATTTTTAGGCCCTA 60.093 50.000 0.00 0.00 0.00 3.53
352 353 0.996583 TCCGGTGATTTTTAGGCCCT 59.003 50.000 0.00 0.00 0.00 5.19
353 354 1.100510 GTCCGGTGATTTTTAGGCCC 58.899 55.000 0.00 0.00 0.00 5.80
354 355 0.730840 CGTCCGGTGATTTTTAGGCC 59.269 55.000 0.00 0.00 0.00 5.19
355 356 1.664151 CTCGTCCGGTGATTTTTAGGC 59.336 52.381 0.00 0.00 0.00 3.93
356 357 1.664151 GCTCGTCCGGTGATTTTTAGG 59.336 52.381 0.00 0.00 0.00 2.69
357 358 1.323534 CGCTCGTCCGGTGATTTTTAG 59.676 52.381 0.00 0.00 0.00 1.85
358 359 1.337074 ACGCTCGTCCGGTGATTTTTA 60.337 47.619 0.00 0.00 0.00 1.52
359 360 0.601841 ACGCTCGTCCGGTGATTTTT 60.602 50.000 0.00 0.00 0.00 1.94
360 361 1.005394 ACGCTCGTCCGGTGATTTT 60.005 52.632 0.00 0.00 0.00 1.82
361 362 1.445582 GACGCTCGTCCGGTGATTT 60.446 57.895 11.01 0.00 39.08 2.17
362 363 2.181021 GACGCTCGTCCGGTGATT 59.819 61.111 11.01 0.00 39.08 2.57
370 371 1.189403 CACTATTTCGGACGCTCGTC 58.811 55.000 13.45 13.45 43.87 4.20
371 372 0.524862 ACACTATTTCGGACGCTCGT 59.475 50.000 0.00 0.00 0.00 4.18
372 373 1.189403 GACACTATTTCGGACGCTCG 58.811 55.000 0.00 0.00 0.00 5.03
373 374 1.189403 CGACACTATTTCGGACGCTC 58.811 55.000 0.00 0.00 32.66 5.03
374 375 3.324170 CGACACTATTTCGGACGCT 57.676 52.632 0.00 0.00 32.66 5.07
709 710 3.181506 GCCTTTTAGAGCAATTCCACTCG 60.182 47.826 0.00 0.00 37.99 4.18
710 711 4.013050 AGCCTTTTAGAGCAATTCCACTC 58.987 43.478 0.00 0.00 0.00 3.51
711 712 4.013050 GAGCCTTTTAGAGCAATTCCACT 58.987 43.478 0.00 0.00 0.00 4.00
712 713 3.758554 TGAGCCTTTTAGAGCAATTCCAC 59.241 43.478 0.00 0.00 0.00 4.02
713 714 4.032960 TGAGCCTTTTAGAGCAATTCCA 57.967 40.909 0.00 0.00 0.00 3.53
714 715 4.037327 GGATGAGCCTTTTAGAGCAATTCC 59.963 45.833 0.00 0.00 0.00 3.01
715 716 5.180367 GGATGAGCCTTTTAGAGCAATTC 57.820 43.478 0.00 0.00 0.00 2.17
729 730 4.274978 GGGAGACTAGTATAGGATGAGCC 58.725 52.174 0.00 0.00 44.97 4.70
730 731 4.274978 GGGGAGACTAGTATAGGATGAGC 58.725 52.174 0.00 0.00 44.97 4.26
731 732 4.626771 CGGGGGAGACTAGTATAGGATGAG 60.627 54.167 0.00 0.00 44.97 2.90
732 733 3.266254 CGGGGGAGACTAGTATAGGATGA 59.734 52.174 0.00 0.00 44.97 2.92
733 734 3.266254 TCGGGGGAGACTAGTATAGGATG 59.734 52.174 0.00 0.00 44.97 3.51
734 735 3.524380 CTCGGGGGAGACTAGTATAGGAT 59.476 52.174 0.00 0.00 44.97 3.24
735 736 2.911636 CTCGGGGGAGACTAGTATAGGA 59.088 54.545 0.00 0.00 44.97 2.94
736 737 2.026075 CCTCGGGGGAGACTAGTATAGG 60.026 59.091 0.00 0.00 39.45 2.57
737 738 3.353370 CCTCGGGGGAGACTAGTATAG 57.647 57.143 0.00 0.00 40.51 1.31
765 766 4.029809 CAACGGACCCTCCCCACC 62.030 72.222 0.00 0.00 31.13 4.61
766 767 2.347691 AAACAACGGACCCTCCCCAC 62.348 60.000 0.00 0.00 31.13 4.61
767 768 2.059345 GAAACAACGGACCCTCCCCA 62.059 60.000 0.00 0.00 31.13 4.96
768 769 1.303074 GAAACAACGGACCCTCCCC 60.303 63.158 0.00 0.00 31.13 4.81
769 770 0.037734 ATGAAACAACGGACCCTCCC 59.962 55.000 0.00 0.00 31.13 4.30
770 771 1.450025 GATGAAACAACGGACCCTCC 58.550 55.000 0.00 0.00 0.00 4.30
774 775 1.069500 CCAACGATGAAACAACGGACC 60.069 52.381 0.00 0.00 34.07 4.46
779 780 3.243068 ACTTGCTCCAACGATGAAACAAC 60.243 43.478 0.00 0.00 0.00 3.32
800 801 1.021968 CTTTGCTTATACGGCCCCAC 58.978 55.000 0.00 0.00 0.00 4.61
801 802 0.913205 TCTTTGCTTATACGGCCCCA 59.087 50.000 0.00 0.00 0.00 4.96
802 803 2.047002 TTCTTTGCTTATACGGCCCC 57.953 50.000 0.00 0.00 0.00 5.80
838 839 2.503331 CCCCAATTGTTTTTGCTTCCC 58.497 47.619 4.43 0.00 0.00 3.97
875 877 3.278574 TCATTTCCCCGTGCTTCTATTG 58.721 45.455 0.00 0.00 0.00 1.90
931 933 0.249489 CGATAGGAGGCGAGGGTTTG 60.249 60.000 0.00 0.00 0.00 2.93
935 937 0.322997 AGATCGATAGGAGGCGAGGG 60.323 60.000 0.00 0.00 40.14 4.30
943 945 2.574369 GGGAGGAGAGAGATCGATAGGA 59.426 54.545 0.00 0.00 0.00 2.94
944 946 2.356741 GGGGAGGAGAGAGATCGATAGG 60.357 59.091 0.00 0.00 0.00 2.57
946 948 2.574369 GAGGGGAGGAGAGAGATCGATA 59.426 54.545 0.00 0.00 0.00 2.92
947 949 1.354368 GAGGGGAGGAGAGAGATCGAT 59.646 57.143 0.00 0.00 0.00 3.59
948 950 0.768622 GAGGGGAGGAGAGAGATCGA 59.231 60.000 0.00 0.00 0.00 3.59
966 972 0.918983 GGATTGGATGTGGGGACAGA 59.081 55.000 0.00 0.00 44.46 3.41
972 978 1.526917 GCCTCGGATTGGATGTGGG 60.527 63.158 0.00 0.00 0.00 4.61
1153 1159 1.478654 GGTGGTTCTTGCCTTGGAAGA 60.479 52.381 0.00 0.00 38.18 2.87
1173 1179 1.683011 CCAAGTATGCAGGGAGGGTTG 60.683 57.143 0.00 0.00 0.00 3.77
1189 1195 4.815846 CCCAAACCAAATCAAGAAACCAAG 59.184 41.667 0.00 0.00 0.00 3.61
1311 1317 2.015456 TCTTCTTCCTCAGCACCAGA 57.985 50.000 0.00 0.00 0.00 3.86
1314 1320 3.070748 GTTCTTCTTCTTCCTCAGCACC 58.929 50.000 0.00 0.00 0.00 5.01
1362 1368 4.643387 GCCGCCTGTCCACCTTGT 62.643 66.667 0.00 0.00 0.00 3.16
1410 1416 1.750018 CTTGTGCCGGATGATGCCA 60.750 57.895 5.05 0.00 0.00 4.92
1477 1483 4.348863 TGTGGTGAAAATGGAAATTGGG 57.651 40.909 0.00 0.00 0.00 4.12
1525 1531 5.009010 CACACCATCAGCAAAGTTTCTACTT 59.991 40.000 0.00 0.00 46.44 2.24
1526 1532 4.516698 CACACCATCAGCAAAGTTTCTACT 59.483 41.667 0.00 0.00 35.68 2.57
1527 1533 4.275936 ACACACCATCAGCAAAGTTTCTAC 59.724 41.667 0.00 0.00 0.00 2.59
1528 1534 4.460263 ACACACCATCAGCAAAGTTTCTA 58.540 39.130 0.00 0.00 0.00 2.10
1546 1552 2.025898 GGAGGAAACCGGAAAAACACA 58.974 47.619 9.46 0.00 0.00 3.72
1582 1589 1.387539 GCATGGCCTTCTTCTCCTTC 58.612 55.000 3.32 0.00 0.00 3.46
1605 1612 4.028490 TTGATGGGGTCGCCGCTT 62.028 61.111 12.66 7.52 37.37 4.68
1751 1760 1.730547 GCACAAGCACAACGATGGC 60.731 57.895 0.00 0.00 41.58 4.40
1756 1765 1.083015 GTACGGCACAAGCACAACG 60.083 57.895 0.00 0.00 44.61 4.10
1793 1802 0.596600 GTGTGCTTCAACGAGACGGA 60.597 55.000 0.00 0.00 0.00 4.69
1836 1845 2.600470 GGACCCAAACAGCCCCAC 60.600 66.667 0.00 0.00 0.00 4.61
1959 1971 9.769093 AAGTTCAAACACGATAAATTATACTGC 57.231 29.630 0.00 0.00 0.00 4.40
1983 2049 6.257849 TGCTAACCGTATCTTATGCTTCAAAG 59.742 38.462 0.00 0.00 0.00 2.77
1985 2051 5.666462 TGCTAACCGTATCTTATGCTTCAA 58.334 37.500 0.00 0.00 0.00 2.69
1986 2052 5.270893 TGCTAACCGTATCTTATGCTTCA 57.729 39.130 0.00 0.00 0.00 3.02
1987 2053 5.061064 CGATGCTAACCGTATCTTATGCTTC 59.939 44.000 0.00 0.00 33.14 3.86
1989 2055 4.217767 TCGATGCTAACCGTATCTTATGCT 59.782 41.667 0.00 0.00 33.14 3.79
1990 2056 4.482386 TCGATGCTAACCGTATCTTATGC 58.518 43.478 0.00 0.00 33.14 3.14
1991 2057 5.061064 GCTTCGATGCTAACCGTATCTTATG 59.939 44.000 15.51 0.00 33.14 1.90
1992 2058 5.162075 GCTTCGATGCTAACCGTATCTTAT 58.838 41.667 15.51 0.00 33.14 1.73
1993 2059 4.037089 TGCTTCGATGCTAACCGTATCTTA 59.963 41.667 22.11 0.00 33.14 2.10
2003 2069 3.936453 ACGGTTAATTGCTTCGATGCTAA 59.064 39.130 22.11 15.12 0.00 3.09
2066 2132 4.824848 CGAGGACTTTCGTTCTTACATG 57.175 45.455 0.00 0.00 35.91 3.21
2106 2172 0.814010 GCTGCCAGGGTTATACGGTG 60.814 60.000 0.00 0.00 0.00 4.94
2112 2178 0.323725 CAAGTGGCTGCCAGGGTTAT 60.324 55.000 24.10 1.68 32.34 1.89
2128 2194 5.064452 GCTCTGAGACATAAACATGACCAAG 59.936 44.000 9.28 0.00 0.00 3.61
2129 2195 4.937620 GCTCTGAGACATAAACATGACCAA 59.062 41.667 9.28 0.00 0.00 3.67
2140 2206 3.703052 TGAAGATGCTGCTCTGAGACATA 59.297 43.478 9.28 0.00 0.00 2.29
2145 2211 2.963548 TCTGAAGATGCTGCTCTGAG 57.036 50.000 0.00 0.00 0.00 3.35
2156 2222 6.037610 GGCGTTTGTCATCTTTATCTGAAGAT 59.962 38.462 0.00 0.00 44.94 2.40
2157 2223 5.351465 GGCGTTTGTCATCTTTATCTGAAGA 59.649 40.000 0.00 0.00 39.76 2.87
2176 2242 4.079253 ACTGGATAGAAAACATTGGCGTT 58.921 39.130 0.00 0.00 0.00 4.84
2268 2592 0.892358 TTCCTAGTCGCGTCCACTGT 60.892 55.000 5.77 0.00 0.00 3.55
2273 2597 1.310933 TGGTCTTCCTAGTCGCGTCC 61.311 60.000 5.77 0.00 34.23 4.79
2313 2637 9.793259 CCTCTATTAATTATTTGGACCTAGCAA 57.207 33.333 0.00 0.00 0.00 3.91
2326 2650 9.401058 GCACATATTCTGGCCTCTATTAATTAT 57.599 33.333 3.32 0.00 0.00 1.28
2349 2673 0.746659 AACCACTGCTTTCAAGGCAC 59.253 50.000 0.00 0.00 35.71 5.01
2381 2706 5.227569 TCATGGTGAAGTATGTGTCTTGT 57.772 39.130 0.00 0.00 0.00 3.16
2404 2729 8.418662 GTCCTTCAAATACCTTTAAACCAGTTT 58.581 33.333 0.86 0.86 36.63 2.66
2407 2732 7.761038 AGTCCTTCAAATACCTTTAAACCAG 57.239 36.000 0.00 0.00 0.00 4.00
2409 2734 9.511272 TTCTAGTCCTTCAAATACCTTTAAACC 57.489 33.333 0.00 0.00 0.00 3.27
2421 2746 4.142447 CGTCCGAGATTCTAGTCCTTCAAA 60.142 45.833 0.00 0.00 0.00 2.69
2479 2804 3.709880 TAAGACGACATGGGCGCCG 62.710 63.158 22.54 9.65 0.00 6.46
2483 2808 0.743345 GGGTGTAAGACGACATGGGC 60.743 60.000 0.00 0.00 0.00 5.36
2488 2813 2.158871 AGCTTTTGGGTGTAAGACGACA 60.159 45.455 0.00 0.00 0.00 4.35
2489 2814 2.490991 AGCTTTTGGGTGTAAGACGAC 58.509 47.619 0.00 0.00 0.00 4.34
2490 2815 2.922740 AGCTTTTGGGTGTAAGACGA 57.077 45.000 0.00 0.00 0.00 4.20
2491 2816 3.550030 CCAAAGCTTTTGGGTGTAAGACG 60.550 47.826 9.53 0.00 35.96 4.18
2492 2817 3.634910 TCCAAAGCTTTTGGGTGTAAGAC 59.365 43.478 20.54 0.00 39.96 3.01
2493 2818 3.888930 CTCCAAAGCTTTTGGGTGTAAGA 59.111 43.478 20.54 5.73 39.96 2.10
2494 2819 3.552890 GCTCCAAAGCTTTTGGGTGTAAG 60.553 47.826 20.54 13.98 45.55 2.34
2495 2820 2.364002 GCTCCAAAGCTTTTGGGTGTAA 59.636 45.455 20.54 6.76 45.55 2.41
2496 2821 1.960689 GCTCCAAAGCTTTTGGGTGTA 59.039 47.619 20.54 7.02 45.55 2.90
2497 2822 0.752658 GCTCCAAAGCTTTTGGGTGT 59.247 50.000 20.54 0.00 45.55 4.16
2498 2823 3.593834 GCTCCAAAGCTTTTGGGTG 57.406 52.632 20.54 16.19 45.55 4.61
2507 2832 2.677228 TGGGGCTAGCTCCAAAGC 59.323 61.111 34.56 7.42 44.87 3.51
2543 2869 1.126846 CTGAAACATGCGACGAGGAAC 59.873 52.381 0.00 0.00 0.00 3.62
2544 2870 1.428448 CTGAAACATGCGACGAGGAA 58.572 50.000 0.00 0.00 0.00 3.36
2545 2871 0.389817 CCTGAAACATGCGACGAGGA 60.390 55.000 0.00 0.00 0.00 3.71
2546 2872 1.361668 CCCTGAAACATGCGACGAGG 61.362 60.000 0.00 0.00 0.00 4.63
2547 2873 0.389817 TCCCTGAAACATGCGACGAG 60.390 55.000 0.00 0.00 0.00 4.18
2548 2874 0.034198 TTCCCTGAAACATGCGACGA 59.966 50.000 0.00 0.00 0.00 4.20
2549 2875 0.443869 CTTCCCTGAAACATGCGACG 59.556 55.000 0.00 0.00 0.00 5.12
2550 2876 0.804989 CCTTCCCTGAAACATGCGAC 59.195 55.000 0.00 0.00 0.00 5.19
2551 2877 0.400213 ACCTTCCCTGAAACATGCGA 59.600 50.000 0.00 0.00 0.00 5.10
2552 2878 1.068333 CAACCTTCCCTGAAACATGCG 60.068 52.381 0.00 0.00 0.00 4.73
2553 2879 1.963515 ACAACCTTCCCTGAAACATGC 59.036 47.619 0.00 0.00 0.00 4.06
2554 2880 3.221771 TGACAACCTTCCCTGAAACATG 58.778 45.455 0.00 0.00 0.00 3.21
2555 2881 3.593442 TGACAACCTTCCCTGAAACAT 57.407 42.857 0.00 0.00 0.00 2.71
2596 2922 3.028130 CCGCCACTGCATAGCATG 58.972 61.111 0.00 0.00 38.13 4.06
2600 2926 2.898840 CCAGCCGCCACTGCATAG 60.899 66.667 0.00 0.00 36.29 2.23
2601 2927 3.398310 TCCAGCCGCCACTGCATA 61.398 61.111 0.00 0.00 36.29 3.14
2613 2939 4.400961 AGGCAAGCCTCGTCCAGC 62.401 66.667 8.02 0.00 44.43 4.85
2614 2940 2.435586 CAGGCAAGCCTCGTCCAG 60.436 66.667 11.38 0.00 46.28 3.86
2615 2941 4.704833 GCAGGCAAGCCTCGTCCA 62.705 66.667 11.38 0.00 46.28 4.02
2616 2942 4.400961 AGCAGGCAAGCCTCGTCC 62.401 66.667 11.38 0.24 46.28 4.79
2617 2943 2.817396 GAGCAGGCAAGCCTCGTC 60.817 66.667 11.38 7.04 46.28 4.20
2618 2944 4.400961 GGAGCAGGCAAGCCTCGT 62.401 66.667 11.38 0.48 46.28 4.18
2620 2946 3.695747 GAGGGAGCAGGCAAGCCTC 62.696 68.421 11.38 6.54 46.28 4.70
2623 2949 4.087892 TCGAGGGAGCAGGCAAGC 62.088 66.667 0.00 0.00 0.00 4.01
2624 2950 2.186384 CTCGAGGGAGCAGGCAAG 59.814 66.667 3.91 0.00 32.61 4.01
2625 2951 3.393970 CCTCGAGGGAGCAGGCAA 61.394 66.667 24.62 0.00 39.06 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.