Multiple sequence alignment - TraesCS5A01G164700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G164700 chr5A 100.000 4352 0 0 1 4352 353569153 353573504 0.000000e+00 8037.0
1 TraesCS5A01G164700 chr5A 98.230 113 2 0 3854 3966 7183788 7183676 9.550000e-47 198.0
2 TraesCS5A01G164700 chr5A 97.436 117 2 1 3858 3973 709762377 709762493 9.550000e-47 198.0
3 TraesCS5A01G164700 chr5A 85.915 142 12 3 3999 4132 633847299 633847440 1.260000e-30 145.0
4 TraesCS5A01G164700 chr5D 95.376 3720 123 17 1 3716 267239401 267235727 0.000000e+00 5871.0
5 TraesCS5A01G164700 chr5D 87.546 273 12 5 3967 4222 267235708 267235441 3.290000e-76 296.0
6 TraesCS5A01G164700 chr5D 94.017 117 7 0 3854 3970 254848558 254848674 1.240000e-40 178.0
7 TraesCS5A01G164700 chr5D 86.014 143 11 3 3999 4132 506079924 506080066 1.260000e-30 145.0
8 TraesCS5A01G164700 chr5B 95.524 3061 84 17 672 3716 301304206 301301183 0.000000e+00 4844.0
9 TraesCS5A01G164700 chr5B 87.031 293 20 5 3967 4241 301301164 301300872 9.090000e-82 315.0
10 TraesCS5A01G164700 chr5B 85.294 136 11 3 3999 4125 636601359 636601494 9.820000e-27 132.0
11 TraesCS5A01G164700 chr5B 100.000 29 0 0 3828 3856 301301197 301301169 2.000000e-03 54.7
12 TraesCS5A01G164700 chr2B 99.083 109 1 0 3858 3966 785224593 785224701 3.430000e-46 196.0
13 TraesCS5A01G164700 chr7B 95.041 121 6 0 3859 3979 106336784 106336664 1.600000e-44 191.0
14 TraesCS5A01G164700 chr7B 97.321 112 2 1 3717 3827 529145381 529145270 5.750000e-44 189.0
15 TraesCS5A01G164700 chr7B 95.455 110 5 0 3859 3968 49192142 49192033 4.470000e-40 176.0
16 TraesCS5A01G164700 chr2A 98.148 108 2 0 3859 3966 24058745 24058852 5.750000e-44 189.0
17 TraesCS5A01G164700 chr6A 96.491 114 3 1 3717 3829 391257558 391257445 2.070000e-43 187.0
18 TraesCS5A01G164700 chr6A 94.783 115 6 0 3859 3973 53076303 53076417 3.460000e-41 180.0
19 TraesCS5A01G164700 chr3A 93.600 125 7 1 3717 3841 526764788 526764665 7.430000e-43 185.0
20 TraesCS5A01G164700 chr3A 93.388 121 6 2 3717 3837 550110982 550110864 1.240000e-40 178.0
21 TraesCS5A01G164700 chr4A 96.429 112 3 1 3717 3827 359273905 359273794 2.670000e-42 183.0
22 TraesCS5A01G164700 chr4A 95.652 115 4 1 3714 3827 681720272 681720386 2.670000e-42 183.0
23 TraesCS5A01G164700 chr4A 95.575 113 5 0 3716 3828 610710044 610709932 9.610000e-42 182.0
24 TraesCS5A01G164700 chr4B 94.872 117 5 1 3717 3832 304887970 304888086 9.610000e-42 182.0
25 TraesCS5A01G164700 chr1A 95.575 113 5 0 3717 3829 83828027 83827915 9.610000e-42 182.0
26 TraesCS5A01G164700 chr7A 94.643 112 6 0 3855 3966 619865350 619865461 1.610000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G164700 chr5A 353569153 353573504 4351 False 8037.0 8037 100.000 1 4352 1 chr5A.!!$F1 4351
1 TraesCS5A01G164700 chr5D 267235441 267239401 3960 True 3083.5 5871 91.461 1 4222 2 chr5D.!!$R1 4221
2 TraesCS5A01G164700 chr5B 301300872 301304206 3334 True 1737.9 4844 94.185 672 4241 3 chr5B.!!$R1 3569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 413 0.105593 CTGGATCGCTGTGGCATAGT 59.894 55.000 13.02 0.0 38.60 2.12 F
706 709 0.107508 ATAGCGTGCTGATGGCTTGT 60.108 50.000 4.25 0.0 42.39 3.16 F
719 722 1.001974 TGGCTTGTCTCTAATGCACGT 59.998 47.619 0.00 0.0 0.00 4.49 F
2682 2695 0.967380 TCATGTCTGCTCAGCTCCGA 60.967 55.000 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1936 0.749454 GGCCATACACCAGCTTGAGG 60.749 60.000 0.00 0.0 0.00 3.86 R
2682 2695 1.352352 AGCACCCAGTCATAAGCTGTT 59.648 47.619 0.00 0.0 32.41 3.16 R
2843 2856 2.166907 ATCCCAGGTAGACAGGTCAG 57.833 55.000 1.84 0.0 0.00 3.51 R
3770 3787 0.035915 GCAGGGTCTGAGAAAGGGTC 60.036 60.000 0.00 0.0 32.44 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.662596 CCCTAGCGCACTTGTCCA 59.337 61.111 11.47 0.00 0.00 4.02
26 27 0.814010 GCACTTGTCCACCAGTTCGT 60.814 55.000 0.00 0.00 0.00 3.85
38 39 1.270094 CCAGTTCGTAGAGTTGCACCA 60.270 52.381 0.00 0.00 38.43 4.17
59 60 2.819154 TGCGCACATCATGGACCG 60.819 61.111 5.66 0.00 0.00 4.79
117 118 3.284449 GAACACCGCGGCAACCTT 61.284 61.111 28.58 9.19 0.00 3.50
126 127 2.785258 GGCAACCTTCGCATCGTC 59.215 61.111 0.00 0.00 0.00 4.20
157 158 1.919918 TTTTGTTGCGAACTTGGCTG 58.080 45.000 0.00 0.00 0.00 4.85
176 177 1.142060 TGGAACGTTGGATGAACCTGT 59.858 47.619 5.00 0.00 39.86 4.00
182 183 2.778299 GTTGGATGAACCTGTGTAGCA 58.222 47.619 0.00 0.00 39.86 3.49
196 197 2.111384 TGTAGCATCTCACCCTCCTTC 58.889 52.381 0.00 0.00 0.00 3.46
220 223 1.135257 CGGATGGCGTTTAAATTGGCA 60.135 47.619 17.75 17.75 42.64 4.92
250 253 1.235281 GCCGGTCACAAGTTCCCTTC 61.235 60.000 1.90 0.00 0.00 3.46
259 262 3.037549 ACAAGTTCCCTTCAAATTGGCA 58.962 40.909 0.00 0.00 36.00 4.92
260 263 3.647590 ACAAGTTCCCTTCAAATTGGCAT 59.352 39.130 0.00 0.00 36.00 4.40
270 273 1.994779 CAAATTGGCATTGAACCGCTC 59.005 47.619 0.00 0.00 0.00 5.03
301 304 3.181510 CGTCCCAAGTTTCGATGGAATTC 60.182 47.826 4.30 0.00 39.12 2.17
302 305 3.006940 TCCCAAGTTTCGATGGAATTCG 58.993 45.455 4.30 0.00 39.12 3.34
303 306 2.097466 CCCAAGTTTCGATGGAATTCGG 59.903 50.000 4.30 0.00 39.12 4.30
304 307 2.747446 CCAAGTTTCGATGGAATTCGGT 59.253 45.455 0.00 0.00 39.12 4.69
305 308 3.426159 CCAAGTTTCGATGGAATTCGGTG 60.426 47.826 0.00 0.00 39.12 4.94
306 309 2.356135 AGTTTCGATGGAATTCGGTGG 58.644 47.619 0.00 0.00 39.56 4.61
307 310 1.400494 GTTTCGATGGAATTCGGTGGG 59.600 52.381 0.00 0.00 39.56 4.61
308 311 0.906066 TTCGATGGAATTCGGTGGGA 59.094 50.000 0.00 0.00 39.56 4.37
309 312 0.464036 TCGATGGAATTCGGTGGGAG 59.536 55.000 0.00 0.00 39.56 4.30
310 313 0.532862 CGATGGAATTCGGTGGGAGG 60.533 60.000 0.00 0.00 35.50 4.30
311 314 0.546598 GATGGAATTCGGTGGGAGGT 59.453 55.000 0.00 0.00 0.00 3.85
312 315 0.999712 ATGGAATTCGGTGGGAGGTT 59.000 50.000 0.00 0.00 0.00 3.50
313 316 0.326927 TGGAATTCGGTGGGAGGTTC 59.673 55.000 0.00 0.00 0.00 3.62
314 317 0.326927 GGAATTCGGTGGGAGGTTCA 59.673 55.000 0.00 0.00 0.00 3.18
315 318 1.064685 GGAATTCGGTGGGAGGTTCAT 60.065 52.381 0.00 0.00 0.00 2.57
316 319 2.017049 GAATTCGGTGGGAGGTTCATG 58.983 52.381 0.00 0.00 0.00 3.07
317 320 1.285280 ATTCGGTGGGAGGTTCATGA 58.715 50.000 0.00 0.00 0.00 3.07
318 321 0.613260 TTCGGTGGGAGGTTCATGAG 59.387 55.000 0.00 0.00 0.00 2.90
319 322 1.450312 CGGTGGGAGGTTCATGAGC 60.450 63.158 0.04 0.04 0.00 4.26
320 323 1.077429 GGTGGGAGGTTCATGAGCC 60.077 63.158 20.22 20.22 0.00 4.70
321 324 1.685224 GTGGGAGGTTCATGAGCCA 59.315 57.895 27.96 6.80 33.73 4.75
337 340 1.153168 CCATGAACGGGCCGAATCT 60.153 57.895 35.78 13.81 0.00 2.40
346 349 1.680860 CGGGCCGAATCTTTAAGGGTT 60.681 52.381 24.41 0.00 0.00 4.11
378 381 2.829720 AGTTAACCATGGCGTCAGAGTA 59.170 45.455 13.04 0.00 0.00 2.59
410 413 0.105593 CTGGATCGCTGTGGCATAGT 59.894 55.000 13.02 0.00 38.60 2.12
418 421 2.436417 GCTGTGGCATAGTTTTGGAGA 58.564 47.619 13.02 0.00 38.54 3.71
424 427 4.518970 GTGGCATAGTTTTGGAGAAACTCA 59.481 41.667 7.37 0.00 40.58 3.41
433 436 0.395312 GGAGAAACTCAACGGGGTCA 59.605 55.000 0.00 0.00 31.08 4.02
436 439 1.489230 AGAAACTCAACGGGGTCAGTT 59.511 47.619 0.00 0.00 0.00 3.16
485 488 4.697756 TGAACCGCGGAGGCAAGG 62.698 66.667 35.90 1.83 46.52 3.61
537 540 3.120086 GCCCCACACCTATCGGCAT 62.120 63.158 0.00 0.00 39.50 4.40
542 545 1.006102 ACACCTATCGGCATAGCGC 60.006 57.895 0.00 0.00 41.28 5.92
592 595 2.982130 GCCTCCGCCTTCTCTTGA 59.018 61.111 0.00 0.00 0.00 3.02
595 598 0.321671 CCTCCGCCTTCTCTTGAACA 59.678 55.000 0.00 0.00 0.00 3.18
617 620 3.655810 CTGTCCTGCCGCTCTCACC 62.656 68.421 0.00 0.00 0.00 4.02
618 621 4.803426 GTCCTGCCGCTCTCACCG 62.803 72.222 0.00 0.00 0.00 4.94
635 638 1.652012 CGGCGCTCTTGGACAAAAA 59.348 52.632 7.64 0.00 0.00 1.94
659 662 2.669364 ACCACGACGTATGTCTTTCAC 58.331 47.619 13.11 0.00 43.21 3.18
689 692 6.073167 CCAAACAACATGCTTGCAATCAAATA 60.073 34.615 7.12 0.00 0.00 1.40
706 709 0.107508 ATAGCGTGCTGATGGCTTGT 60.108 50.000 4.25 0.00 42.39 3.16
718 721 1.725641 TGGCTTGTCTCTAATGCACG 58.274 50.000 0.00 0.00 0.00 5.34
719 722 1.001974 TGGCTTGTCTCTAATGCACGT 59.998 47.619 0.00 0.00 0.00 4.49
720 723 2.076863 GGCTTGTCTCTAATGCACGTT 58.923 47.619 0.00 0.00 0.00 3.99
721 724 2.094417 GGCTTGTCTCTAATGCACGTTC 59.906 50.000 0.00 0.00 0.00 3.95
722 725 2.094417 GCTTGTCTCTAATGCACGTTCC 59.906 50.000 0.00 0.00 0.00 3.62
761 764 6.586082 GGCAACCAAACTAAATACAGAACATG 59.414 38.462 0.00 0.00 0.00 3.21
849 852 5.163322 TGGAGTCAAAGATGCAACCAAAATT 60.163 36.000 0.00 0.00 0.00 1.82
850 853 6.041409 TGGAGTCAAAGATGCAACCAAAATTA 59.959 34.615 0.00 0.00 0.00 1.40
851 854 6.366061 GGAGTCAAAGATGCAACCAAAATTAC 59.634 38.462 0.00 0.00 0.00 1.89
864 868 7.524065 CAACCAAAATTACGTAGGAACCTAAG 58.476 38.462 11.15 11.15 34.87 2.18
867 871 7.605309 ACCAAAATTACGTAGGAACCTAAGAAG 59.395 37.037 17.72 6.60 33.38 2.85
885 889 2.586258 AGCGTTCATACTGTAGCAGG 57.414 50.000 1.08 0.00 35.51 4.85
1569 1582 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1570 1583 1.230650 TCCTCCTCCTCCTCCTCCA 60.231 63.158 0.00 0.00 0.00 3.86
1571 1584 1.075600 CCTCCTCCTCCTCCTCCAC 60.076 68.421 0.00 0.00 0.00 4.02
1674 1687 2.366972 CCATCCCTCCCTTCCCGT 60.367 66.667 0.00 0.00 0.00 5.28
1683 1696 2.609610 CCTTCCCGTCCCTTCCCA 60.610 66.667 0.00 0.00 0.00 4.37
1762 1775 7.908082 CGATGACTAAATTTAATTCTTCGCCAA 59.092 33.333 20.28 0.61 30.36 4.52
1923 1936 1.899437 TTGTGACGAGATGGAGGCCC 61.899 60.000 0.00 0.00 0.00 5.80
2295 2308 1.414181 TCTGCAGAGGTAGCTAATGCC 59.586 52.381 22.10 5.19 40.80 4.40
2301 2314 2.158505 AGAGGTAGCTAATGCCGAGGTA 60.159 50.000 0.00 0.00 39.02 3.08
2397 2410 3.015327 GTGCAAGGAAGCTGAGATTGAT 58.985 45.455 0.00 0.00 34.99 2.57
2634 2647 1.377072 TGCAGCAAGGAAGCGCATA 60.377 52.632 11.47 0.00 38.44 3.14
2682 2695 0.967380 TCATGTCTGCTCAGCTCCGA 60.967 55.000 0.00 0.00 0.00 4.55
3240 3253 0.033504 TCTCCACGGTGCTGAAGAAC 59.966 55.000 1.68 0.00 0.00 3.01
3426 3442 9.076596 GTTTGATAGGCATTATTTGTTCTTGAC 57.923 33.333 0.00 0.00 0.00 3.18
3553 3570 6.549912 TCTTGATCTGTTTCATGTGTCTTG 57.450 37.500 0.00 0.00 0.00 3.02
3712 3729 5.710513 TTTTTGCAAGCAGTGATACAGAT 57.289 34.783 0.00 0.00 0.00 2.90
3713 3730 5.710513 TTTTGCAAGCAGTGATACAGATT 57.289 34.783 0.00 0.00 0.00 2.40
3714 3731 4.690184 TTGCAAGCAGTGATACAGATTG 57.310 40.909 0.00 0.00 34.72 2.67
3715 3732 3.678289 TGCAAGCAGTGATACAGATTGT 58.322 40.909 0.00 0.00 34.22 2.71
3716 3733 4.831107 TGCAAGCAGTGATACAGATTGTA 58.169 39.130 0.00 0.00 34.22 2.41
3717 3734 4.872124 TGCAAGCAGTGATACAGATTGTAG 59.128 41.667 0.00 0.00 36.14 2.74
3718 3735 4.260538 GCAAGCAGTGATACAGATTGTAGC 60.261 45.833 0.00 0.00 39.50 3.58
3719 3736 4.065321 AGCAGTGATACAGATTGTAGCC 57.935 45.455 0.00 0.00 38.38 3.93
3720 3737 3.708631 AGCAGTGATACAGATTGTAGCCT 59.291 43.478 0.00 0.00 38.38 4.58
3721 3738 4.054671 GCAGTGATACAGATTGTAGCCTC 58.945 47.826 0.00 0.00 38.38 4.70
3722 3739 4.202202 GCAGTGATACAGATTGTAGCCTCT 60.202 45.833 0.00 0.00 38.38 3.69
3723 3740 5.683509 GCAGTGATACAGATTGTAGCCTCTT 60.684 44.000 0.00 0.00 38.38 2.85
3724 3741 6.461648 GCAGTGATACAGATTGTAGCCTCTTA 60.462 42.308 0.00 0.00 38.38 2.10
3725 3742 6.920758 CAGTGATACAGATTGTAGCCTCTTAC 59.079 42.308 2.47 0.00 38.38 2.34
3726 3743 6.607600 AGTGATACAGATTGTAGCCTCTTACA 59.392 38.462 2.47 0.00 38.38 2.41
3727 3744 6.920758 GTGATACAGATTGTAGCCTCTTACAG 59.079 42.308 2.47 0.00 38.38 2.74
3728 3745 6.833933 TGATACAGATTGTAGCCTCTTACAGA 59.166 38.462 2.47 0.00 38.38 3.41
3729 3746 7.342026 TGATACAGATTGTAGCCTCTTACAGAA 59.658 37.037 2.47 0.00 38.38 3.02
3730 3747 6.360370 ACAGATTGTAGCCTCTTACAGAAA 57.640 37.500 0.00 0.00 35.17 2.52
3731 3748 6.951971 ACAGATTGTAGCCTCTTACAGAAAT 58.048 36.000 0.00 0.00 35.17 2.17
3732 3749 6.820656 ACAGATTGTAGCCTCTTACAGAAATG 59.179 38.462 0.00 0.00 35.17 2.32
3733 3750 6.820656 CAGATTGTAGCCTCTTACAGAAATGT 59.179 38.462 0.00 0.00 35.17 2.71
3734 3751 7.981789 CAGATTGTAGCCTCTTACAGAAATGTA 59.018 37.037 0.00 0.00 35.17 2.29
3735 3752 8.200792 AGATTGTAGCCTCTTACAGAAATGTAG 58.799 37.037 0.00 0.00 35.17 2.74
3736 3753 6.222038 TGTAGCCTCTTACAGAAATGTAGG 57.778 41.667 0.00 0.00 0.00 3.18
3737 3754 4.762289 AGCCTCTTACAGAAATGTAGGG 57.238 45.455 0.00 0.66 0.00 3.53
3738 3755 4.362677 AGCCTCTTACAGAAATGTAGGGA 58.637 43.478 0.00 0.00 0.00 4.20
3739 3756 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3740 3757 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3741 3758 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3742 3759 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3743 3760 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3744 3761 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3745 3762 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3746 3763 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3747 3764 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3748 3765 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3749 3766 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3750 3767 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3751 3768 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3752 3769 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3753 3770 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3754 3771 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3755 3772 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3756 3773 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3757 3774 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3758 3775 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3759 3776 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3760 3777 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3761 3778 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3762 3779 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3763 3780 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3764 3781 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3765 3782 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3766 3783 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3767 3784 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3772 3789 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3773 3790 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3774 3791 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3775 3792 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3776 3793 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3777 3794 0.179001 CCAAAGTGGTCGGACCCTTT 60.179 55.000 25.31 25.31 38.45 3.11
3778 3795 1.235724 CAAAGTGGTCGGACCCTTTC 58.764 55.000 26.88 15.90 36.95 2.62
3779 3796 1.137697 AAAGTGGTCGGACCCTTTCT 58.862 50.000 25.31 16.45 35.36 2.52
3780 3797 0.685660 AAGTGGTCGGACCCTTTCTC 59.314 55.000 23.81 7.83 37.50 2.87
3781 3798 0.471211 AGTGGTCGGACCCTTTCTCA 60.471 55.000 23.81 0.61 37.50 3.27
3782 3799 0.037232 GTGGTCGGACCCTTTCTCAG 60.037 60.000 23.81 0.00 37.50 3.35
3783 3800 0.178944 TGGTCGGACCCTTTCTCAGA 60.179 55.000 23.81 0.00 37.50 3.27
3784 3801 0.246910 GGTCGGACCCTTTCTCAGAC 59.753 60.000 16.55 0.00 30.04 3.51
3785 3802 0.246910 GTCGGACCCTTTCTCAGACC 59.753 60.000 0.00 0.00 0.00 3.85
3786 3803 0.903454 TCGGACCCTTTCTCAGACCC 60.903 60.000 0.00 0.00 0.00 4.46
3787 3804 0.905337 CGGACCCTTTCTCAGACCCT 60.905 60.000 0.00 0.00 0.00 4.34
3788 3805 0.615850 GGACCCTTTCTCAGACCCTG 59.384 60.000 0.00 0.00 0.00 4.45
3789 3806 0.035915 GACCCTTTCTCAGACCCTGC 60.036 60.000 0.00 0.00 0.00 4.85
3790 3807 0.768221 ACCCTTTCTCAGACCCTGCA 60.768 55.000 0.00 0.00 0.00 4.41
3791 3808 0.322008 CCCTTTCTCAGACCCTGCAC 60.322 60.000 0.00 0.00 0.00 4.57
3792 3809 0.397941 CCTTTCTCAGACCCTGCACA 59.602 55.000 0.00 0.00 0.00 4.57
3793 3810 1.202806 CCTTTCTCAGACCCTGCACAA 60.203 52.381 0.00 0.00 0.00 3.33
3794 3811 2.149578 CTTTCTCAGACCCTGCACAAG 58.850 52.381 0.00 0.00 0.00 3.16
3795 3812 0.250467 TTCTCAGACCCTGCACAAGC 60.250 55.000 0.00 0.00 42.57 4.01
3796 3813 2.031012 TCAGACCCTGCACAAGCG 59.969 61.111 0.00 0.00 46.23 4.68
3797 3814 3.052082 CAGACCCTGCACAAGCGG 61.052 66.667 0.00 0.00 46.23 5.52
3813 3830 2.324215 CGGGAGCTACATGCATTGG 58.676 57.895 0.00 0.00 45.94 3.16
3814 3831 1.168407 CGGGAGCTACATGCATTGGG 61.168 60.000 0.00 0.00 45.94 4.12
3815 3832 0.825010 GGGAGCTACATGCATTGGGG 60.825 60.000 0.00 0.00 45.94 4.96
3816 3833 1.458639 GGAGCTACATGCATTGGGGC 61.459 60.000 0.00 0.00 45.94 5.80
3817 3834 0.466922 GAGCTACATGCATTGGGGCT 60.467 55.000 11.39 11.39 45.94 5.19
3818 3835 0.754217 AGCTACATGCATTGGGGCTG 60.754 55.000 0.00 0.00 45.94 4.85
3819 3836 1.737816 CTACATGCATTGGGGCTGC 59.262 57.895 0.00 0.00 40.10 5.25
3820 3837 1.741327 CTACATGCATTGGGGCTGCC 61.741 60.000 11.05 11.05 38.89 4.85
3821 3838 2.227494 TACATGCATTGGGGCTGCCT 62.227 55.000 19.68 0.00 38.89 4.75
3822 3839 2.039951 ATGCATTGGGGCTGCCTT 59.960 55.556 19.68 0.00 38.89 4.35
3823 3840 1.614226 ATGCATTGGGGCTGCCTTT 60.614 52.632 19.68 0.00 38.89 3.11
3824 3841 1.202769 ATGCATTGGGGCTGCCTTTT 61.203 50.000 19.68 0.00 38.89 2.27
3825 3842 1.376086 GCATTGGGGCTGCCTTTTT 59.624 52.632 19.68 0.00 33.44 1.94
3858 3875 6.169094 CAGATTGTCACACCTGAGATTTACT 58.831 40.000 1.00 0.00 0.00 2.24
3859 3876 7.039011 ACAGATTGTCACACCTGAGATTTACTA 60.039 37.037 12.13 0.00 0.00 1.82
3860 3877 7.276658 CAGATTGTCACACCTGAGATTTACTAC 59.723 40.741 1.00 0.00 0.00 2.73
3861 3878 6.665992 TTGTCACACCTGAGATTTACTACT 57.334 37.500 0.00 0.00 0.00 2.57
3862 3879 6.268825 TGTCACACCTGAGATTTACTACTC 57.731 41.667 0.00 0.00 0.00 2.59
3863 3880 5.185249 TGTCACACCTGAGATTTACTACTCC 59.815 44.000 0.00 0.00 32.84 3.85
3864 3881 4.710375 TCACACCTGAGATTTACTACTCCC 59.290 45.833 0.00 0.00 32.84 4.30
3865 3882 4.712337 CACACCTGAGATTTACTACTCCCT 59.288 45.833 0.00 0.00 32.84 4.20
3866 3883 4.957327 ACACCTGAGATTTACTACTCCCTC 59.043 45.833 0.00 0.00 32.84 4.30
3867 3884 4.342665 CACCTGAGATTTACTACTCCCTCC 59.657 50.000 0.00 0.00 32.84 4.30
3868 3885 4.016479 ACCTGAGATTTACTACTCCCTCCA 60.016 45.833 0.00 0.00 32.84 3.86
3869 3886 5.151454 CCTGAGATTTACTACTCCCTCCAT 58.849 45.833 0.00 0.00 32.84 3.41
3870 3887 5.604650 CCTGAGATTTACTACTCCCTCCATT 59.395 44.000 0.00 0.00 32.84 3.16
3871 3888 6.239458 CCTGAGATTTACTACTCCCTCCATTC 60.239 46.154 0.00 0.00 32.84 2.67
3872 3889 6.202331 TGAGATTTACTACTCCCTCCATTCA 58.798 40.000 0.00 0.00 32.84 2.57
3873 3890 6.846505 TGAGATTTACTACTCCCTCCATTCAT 59.153 38.462 0.00 0.00 32.84 2.57
3874 3891 7.348274 TGAGATTTACTACTCCCTCCATTCATT 59.652 37.037 0.00 0.00 32.84 2.57
3875 3892 8.798975 AGATTTACTACTCCCTCCATTCATTA 57.201 34.615 0.00 0.00 0.00 1.90
3876 3893 9.398921 AGATTTACTACTCCCTCCATTCATTAT 57.601 33.333 0.00 0.00 0.00 1.28
3885 3902 8.314751 ACTCCCTCCATTCATTATTATAAGACG 58.685 37.037 0.00 0.00 0.00 4.18
3886 3903 8.202461 TCCCTCCATTCATTATTATAAGACGT 57.798 34.615 0.00 0.00 0.00 4.34
3887 3904 8.656806 TCCCTCCATTCATTATTATAAGACGTT 58.343 33.333 0.00 0.00 0.00 3.99
3888 3905 9.284968 CCCTCCATTCATTATTATAAGACGTTT 57.715 33.333 0.00 0.00 0.00 3.60
3896 3913 8.609176 TCATTATTATAAGACGTTTTGGACAGC 58.391 33.333 0.83 0.00 0.00 4.40
3897 3914 8.612619 CATTATTATAAGACGTTTTGGACAGCT 58.387 33.333 0.83 0.00 0.00 4.24
3898 3915 9.826574 ATTATTATAAGACGTTTTGGACAGCTA 57.173 29.630 0.83 0.00 0.00 3.32
3899 3916 7.772332 ATTATAAGACGTTTTGGACAGCTAG 57.228 36.000 0.83 0.00 0.00 3.42
3900 3917 1.797025 AGACGTTTTGGACAGCTAGC 58.203 50.000 6.62 6.62 0.00 3.42
3901 3918 1.344763 AGACGTTTTGGACAGCTAGCT 59.655 47.619 12.68 12.68 0.00 3.32
3902 3919 2.143925 GACGTTTTGGACAGCTAGCTT 58.856 47.619 16.46 6.82 0.00 3.74
3903 3920 2.548480 GACGTTTTGGACAGCTAGCTTT 59.452 45.455 16.46 9.34 0.00 3.51
3904 3921 2.290641 ACGTTTTGGACAGCTAGCTTTG 59.709 45.455 16.46 8.63 0.00 2.77
3905 3922 2.548057 CGTTTTGGACAGCTAGCTTTGA 59.452 45.455 16.46 0.00 0.00 2.69
3906 3923 3.003275 CGTTTTGGACAGCTAGCTTTGAA 59.997 43.478 16.46 2.74 0.00 2.69
3907 3924 4.290969 GTTTTGGACAGCTAGCTTTGAAC 58.709 43.478 16.46 10.39 0.00 3.18
3908 3925 3.492102 TTGGACAGCTAGCTTTGAACT 57.508 42.857 16.46 0.00 0.00 3.01
3909 3926 2.771089 TGGACAGCTAGCTTTGAACTG 58.229 47.619 16.46 5.33 0.00 3.16
3910 3927 2.104792 TGGACAGCTAGCTTTGAACTGT 59.895 45.455 16.46 9.03 43.93 3.55
3911 3928 3.142174 GGACAGCTAGCTTTGAACTGTT 58.858 45.455 16.46 0.00 41.45 3.16
3912 3929 3.565902 GGACAGCTAGCTTTGAACTGTTT 59.434 43.478 16.46 0.00 41.45 2.83
3913 3930 4.036852 GGACAGCTAGCTTTGAACTGTTTT 59.963 41.667 16.46 0.00 41.45 2.43
3914 3931 4.925068 ACAGCTAGCTTTGAACTGTTTTG 58.075 39.130 16.46 2.09 38.38 2.44
3915 3932 4.202050 ACAGCTAGCTTTGAACTGTTTTGG 60.202 41.667 16.46 0.55 38.38 3.28
3916 3933 3.319122 AGCTAGCTTTGAACTGTTTTGGG 59.681 43.478 12.68 0.00 0.00 4.12
3917 3934 2.602257 AGCTTTGAACTGTTTTGGGC 57.398 45.000 0.00 0.00 0.00 5.36
3918 3935 1.830477 AGCTTTGAACTGTTTTGGGCA 59.170 42.857 0.00 0.00 0.00 5.36
3919 3936 1.933181 GCTTTGAACTGTTTTGGGCAC 59.067 47.619 0.00 0.00 0.00 5.01
3920 3937 2.418609 GCTTTGAACTGTTTTGGGCACT 60.419 45.455 0.00 0.00 0.00 4.40
3921 3938 2.957491 TTGAACTGTTTTGGGCACTG 57.043 45.000 0.00 0.00 0.00 3.66
3922 3939 1.846007 TGAACTGTTTTGGGCACTGT 58.154 45.000 0.00 0.00 0.00 3.55
3923 3940 1.748493 TGAACTGTTTTGGGCACTGTC 59.252 47.619 0.00 0.00 0.00 3.51
3924 3941 2.024414 GAACTGTTTTGGGCACTGTCT 58.976 47.619 0.00 0.00 0.00 3.41
3925 3942 1.392589 ACTGTTTTGGGCACTGTCTG 58.607 50.000 0.00 0.00 0.00 3.51
3926 3943 1.064758 ACTGTTTTGGGCACTGTCTGA 60.065 47.619 0.00 0.00 0.00 3.27
3927 3944 2.023673 CTGTTTTGGGCACTGTCTGAA 58.976 47.619 0.00 0.00 0.00 3.02
3928 3945 2.624838 CTGTTTTGGGCACTGTCTGAAT 59.375 45.455 0.00 0.00 0.00 2.57
3929 3946 3.030291 TGTTTTGGGCACTGTCTGAATT 58.970 40.909 0.00 0.00 0.00 2.17
3930 3947 3.181477 TGTTTTGGGCACTGTCTGAATTG 60.181 43.478 0.00 0.00 0.00 2.32
3931 3948 2.363306 TTGGGCACTGTCTGAATTGT 57.637 45.000 0.00 0.00 0.00 2.71
3932 3949 1.896220 TGGGCACTGTCTGAATTGTC 58.104 50.000 0.00 0.00 0.00 3.18
3933 3950 1.421268 TGGGCACTGTCTGAATTGTCT 59.579 47.619 0.00 0.00 0.00 3.41
3934 3951 2.637382 TGGGCACTGTCTGAATTGTCTA 59.363 45.455 0.00 0.00 0.00 2.59
3935 3952 3.265791 GGGCACTGTCTGAATTGTCTAG 58.734 50.000 0.00 0.00 0.00 2.43
3936 3953 3.055819 GGGCACTGTCTGAATTGTCTAGA 60.056 47.826 0.00 0.00 0.00 2.43
3937 3954 4.563580 GGGCACTGTCTGAATTGTCTAGAA 60.564 45.833 0.00 0.00 0.00 2.10
3938 3955 4.390297 GGCACTGTCTGAATTGTCTAGAAC 59.610 45.833 0.00 0.00 0.00 3.01
3939 3956 4.090642 GCACTGTCTGAATTGTCTAGAACG 59.909 45.833 0.00 0.00 0.00 3.95
3940 3957 5.223382 CACTGTCTGAATTGTCTAGAACGT 58.777 41.667 0.00 0.00 0.00 3.99
3941 3958 5.343593 CACTGTCTGAATTGTCTAGAACGTC 59.656 44.000 0.00 0.00 0.00 4.34
3942 3959 5.241949 ACTGTCTGAATTGTCTAGAACGTCT 59.758 40.000 0.00 0.00 0.00 4.18
3943 3960 6.085555 TGTCTGAATTGTCTAGAACGTCTT 57.914 37.500 0.00 0.00 0.00 3.01
3944 3961 7.040617 ACTGTCTGAATTGTCTAGAACGTCTTA 60.041 37.037 0.00 0.00 0.00 2.10
3945 3962 7.827701 TGTCTGAATTGTCTAGAACGTCTTAT 58.172 34.615 0.00 0.00 0.00 1.73
3946 3963 8.953313 TGTCTGAATTGTCTAGAACGTCTTATA 58.047 33.333 0.00 0.00 0.00 0.98
3947 3964 9.784680 GTCTGAATTGTCTAGAACGTCTTATAA 57.215 33.333 0.00 0.00 0.00 0.98
3954 3971 9.970395 TTGTCTAGAACGTCTTATAAAAGTGAA 57.030 29.630 0.00 0.00 34.13 3.18
3955 3972 9.403110 TGTCTAGAACGTCTTATAAAAGTGAAC 57.597 33.333 0.00 0.00 34.13 3.18
3956 3973 9.403110 GTCTAGAACGTCTTATAAAAGTGAACA 57.597 33.333 0.00 0.00 34.13 3.18
3957 3974 9.622004 TCTAGAACGTCTTATAAAAGTGAACAG 57.378 33.333 0.00 0.00 34.13 3.16
3958 3975 9.622004 CTAGAACGTCTTATAAAAGTGAACAGA 57.378 33.333 0.00 0.00 34.13 3.41
3959 3976 8.522178 AGAACGTCTTATAAAAGTGAACAGAG 57.478 34.615 0.00 0.00 34.13 3.35
3960 3977 7.599245 AGAACGTCTTATAAAAGTGAACAGAGG 59.401 37.037 0.00 0.00 34.13 3.69
3961 3978 6.989659 ACGTCTTATAAAAGTGAACAGAGGA 58.010 36.000 0.00 0.00 34.13 3.71
3962 3979 7.439381 ACGTCTTATAAAAGTGAACAGAGGAA 58.561 34.615 0.00 0.00 34.13 3.36
3963 3980 7.599245 ACGTCTTATAAAAGTGAACAGAGGAAG 59.401 37.037 0.00 0.00 34.13 3.46
3964 3981 7.599245 CGTCTTATAAAAGTGAACAGAGGAAGT 59.401 37.037 0.00 0.00 34.13 3.01
3965 3982 9.924650 GTCTTATAAAAGTGAACAGAGGAAGTA 57.075 33.333 0.00 0.00 34.13 2.24
4177 4211 3.592059 TCCAGAGAACGGGAAATAAACG 58.408 45.455 0.00 0.00 37.43 3.60
4178 4212 3.007182 TCCAGAGAACGGGAAATAAACGT 59.993 43.478 0.00 0.00 43.43 3.99
4183 4218 5.866092 AGAGAACGGGAAATAAACGTACTTC 59.134 40.000 0.00 0.00 40.31 3.01
4246 4281 7.798596 ATTTCCTATGACTAAGAGCATGTTG 57.201 36.000 0.00 0.00 0.00 3.33
4247 4282 5.282055 TCCTATGACTAAGAGCATGTTGG 57.718 43.478 0.00 0.00 0.00 3.77
4248 4283 4.101585 TCCTATGACTAAGAGCATGTTGGG 59.898 45.833 0.00 0.00 0.00 4.12
4249 4284 4.101585 CCTATGACTAAGAGCATGTTGGGA 59.898 45.833 0.00 0.00 0.00 4.37
4250 4285 4.785346 ATGACTAAGAGCATGTTGGGAT 57.215 40.909 0.00 0.00 0.00 3.85
4251 4286 4.142609 TGACTAAGAGCATGTTGGGATC 57.857 45.455 0.00 0.00 0.00 3.36
4252 4287 3.776969 TGACTAAGAGCATGTTGGGATCT 59.223 43.478 0.00 0.00 31.20 2.75
4253 4288 4.125703 GACTAAGAGCATGTTGGGATCTG 58.874 47.826 0.00 0.00 30.24 2.90
4254 4289 1.760192 AAGAGCATGTTGGGATCTGC 58.240 50.000 0.00 0.00 30.24 4.26
4256 4291 3.491208 AGCATGTTGGGATCTGCTC 57.509 52.632 0.00 0.00 40.85 4.26
4257 4292 0.106819 AGCATGTTGGGATCTGCTCC 60.107 55.000 0.00 0.00 40.85 4.70
4258 4293 0.394762 GCATGTTGGGATCTGCTCCA 60.395 55.000 0.00 0.00 46.98 3.86
4259 4294 1.386533 CATGTTGGGATCTGCTCCAC 58.613 55.000 0.00 0.00 46.98 4.02
4260 4295 1.064906 CATGTTGGGATCTGCTCCACT 60.065 52.381 0.00 0.00 46.98 4.00
4261 4296 0.615331 TGTTGGGATCTGCTCCACTC 59.385 55.000 0.00 0.00 46.98 3.51
4262 4297 0.107459 GTTGGGATCTGCTCCACTCC 60.107 60.000 0.00 0.00 46.98 3.85
4263 4298 1.617018 TTGGGATCTGCTCCACTCCG 61.617 60.000 0.00 0.00 46.98 4.63
4264 4299 2.107953 GGATCTGCTCCACTCCGC 59.892 66.667 0.00 0.00 44.26 5.54
4265 4300 2.725312 GGATCTGCTCCACTCCGCA 61.725 63.158 0.00 0.00 44.26 5.69
4266 4301 1.219124 GATCTGCTCCACTCCGCAA 59.781 57.895 0.00 0.00 35.46 4.85
4267 4302 1.078848 ATCTGCTCCACTCCGCAAC 60.079 57.895 0.00 0.00 35.46 4.17
4268 4303 1.548357 ATCTGCTCCACTCCGCAACT 61.548 55.000 0.00 0.00 35.46 3.16
4269 4304 1.739562 CTGCTCCACTCCGCAACTC 60.740 63.158 0.00 0.00 35.46 3.01
4270 4305 2.435059 GCTCCACTCCGCAACTCC 60.435 66.667 0.00 0.00 0.00 3.85
4271 4306 2.125912 CTCCACTCCGCAACTCCG 60.126 66.667 0.00 0.00 0.00 4.63
4272 4307 4.373116 TCCACTCCGCAACTCCGC 62.373 66.667 0.00 0.00 0.00 5.54
4273 4308 4.379243 CCACTCCGCAACTCCGCT 62.379 66.667 0.00 0.00 0.00 5.52
4274 4309 3.114616 CACTCCGCAACTCCGCTG 61.115 66.667 0.00 0.00 0.00 5.18
4275 4310 3.616721 ACTCCGCAACTCCGCTGT 61.617 61.111 0.00 0.00 0.00 4.40
4276 4311 2.811317 CTCCGCAACTCCGCTGTC 60.811 66.667 0.00 0.00 0.00 3.51
4277 4312 4.717629 TCCGCAACTCCGCTGTCG 62.718 66.667 0.00 0.00 0.00 4.35
4279 4314 3.767230 CGCAACTCCGCTGTCGTG 61.767 66.667 0.00 0.00 0.00 4.35
4280 4315 4.077188 GCAACTCCGCTGTCGTGC 62.077 66.667 0.00 0.00 0.00 5.34
4281 4316 2.661537 CAACTCCGCTGTCGTGCA 60.662 61.111 0.00 0.00 0.00 4.57
4282 4317 2.108157 AACTCCGCTGTCGTGCAA 59.892 55.556 0.00 0.00 0.00 4.08
4283 4318 2.244651 AACTCCGCTGTCGTGCAAC 61.245 57.895 0.00 0.00 0.00 4.17
4284 4319 2.356313 CTCCGCTGTCGTGCAACT 60.356 61.111 0.00 0.00 31.75 3.16
4285 4320 1.956170 CTCCGCTGTCGTGCAACTT 60.956 57.895 0.00 0.00 31.75 2.66
4286 4321 1.498865 CTCCGCTGTCGTGCAACTTT 61.499 55.000 0.00 0.00 31.75 2.66
4287 4322 0.249531 TCCGCTGTCGTGCAACTTTA 60.250 50.000 0.00 0.00 31.75 1.85
4288 4323 0.110823 CCGCTGTCGTGCAACTTTAC 60.111 55.000 0.00 0.00 31.75 2.01
4289 4324 0.110823 CGCTGTCGTGCAACTTTACC 60.111 55.000 0.00 0.00 31.75 2.85
4290 4325 0.110823 GCTGTCGTGCAACTTTACCG 60.111 55.000 0.00 0.00 31.75 4.02
4291 4326 0.511221 CTGTCGTGCAACTTTACCGG 59.489 55.000 0.00 0.00 31.75 5.28
4292 4327 0.179078 TGTCGTGCAACTTTACCGGT 60.179 50.000 13.98 13.98 31.75 5.28
4293 4328 0.939419 GTCGTGCAACTTTACCGGTT 59.061 50.000 15.04 0.00 31.75 4.44
4294 4329 0.938713 TCGTGCAACTTTACCGGTTG 59.061 50.000 15.04 5.42 44.60 3.77
4295 4330 0.040781 CGTGCAACTTTACCGGTTGG 60.041 55.000 15.04 5.96 42.77 3.77
4296 4331 0.318360 GTGCAACTTTACCGGTTGGC 60.318 55.000 15.04 3.91 42.77 4.52
4297 4332 0.466555 TGCAACTTTACCGGTTGGCT 60.467 50.000 15.04 0.00 42.77 4.75
4298 4333 0.039527 GCAACTTTACCGGTTGGCTG 60.040 55.000 15.04 5.68 42.77 4.85
4299 4334 1.600023 CAACTTTACCGGTTGGCTGA 58.400 50.000 15.04 0.00 39.97 4.26
4300 4335 2.159382 CAACTTTACCGGTTGGCTGAT 58.841 47.619 15.04 0.00 39.97 2.90
4301 4336 2.109425 ACTTTACCGGTTGGCTGATC 57.891 50.000 15.04 0.00 39.70 2.92
4302 4337 1.339727 ACTTTACCGGTTGGCTGATCC 60.340 52.381 15.04 0.00 39.70 3.36
4303 4338 0.693622 TTTACCGGTTGGCTGATCCA 59.306 50.000 15.04 0.00 44.85 3.41
4311 4346 2.224821 TGGCTGATCCAGGATGTCC 58.775 57.895 6.70 5.51 40.72 4.02
4313 4348 0.842635 GGCTGATCCAGGATGTCCTT 59.157 55.000 6.70 0.00 46.09 3.36
4314 4349 1.213926 GGCTGATCCAGGATGTCCTTT 59.786 52.381 6.70 0.00 46.09 3.11
4315 4350 2.570135 GCTGATCCAGGATGTCCTTTC 58.430 52.381 6.70 0.00 46.09 2.62
4316 4351 2.747799 GCTGATCCAGGATGTCCTTTCC 60.748 54.545 6.70 0.00 46.09 3.13
4317 4352 2.776536 CTGATCCAGGATGTCCTTTCCT 59.223 50.000 6.70 0.00 46.09 3.36
4321 4356 1.604378 AGGATGTCCTTTCCTGCGG 59.396 57.895 0.00 0.00 46.09 5.69
4322 4357 0.909610 AGGATGTCCTTTCCTGCGGA 60.910 55.000 0.00 0.00 46.09 5.54
4323 4358 0.181350 GGATGTCCTTTCCTGCGGAT 59.819 55.000 0.00 0.00 0.00 4.18
4324 4359 1.416401 GGATGTCCTTTCCTGCGGATA 59.584 52.381 0.00 0.00 0.00 2.59
4325 4360 2.548920 GGATGTCCTTTCCTGCGGATAG 60.549 54.545 0.00 1.07 31.95 2.08
4338 4373 1.954927 CGGATAGCAACTTCCTTCCC 58.045 55.000 0.00 0.00 0.00 3.97
4339 4374 1.486726 CGGATAGCAACTTCCTTCCCT 59.513 52.381 0.00 0.00 0.00 4.20
4340 4375 2.743183 CGGATAGCAACTTCCTTCCCTG 60.743 54.545 0.00 0.00 0.00 4.45
4341 4376 2.505819 GGATAGCAACTTCCTTCCCTGA 59.494 50.000 0.00 0.00 0.00 3.86
4342 4377 3.536570 GATAGCAACTTCCTTCCCTGAC 58.463 50.000 0.00 0.00 0.00 3.51
4343 4378 0.402121 AGCAACTTCCTTCCCTGACC 59.598 55.000 0.00 0.00 0.00 4.02
4344 4379 0.110486 GCAACTTCCTTCCCTGACCA 59.890 55.000 0.00 0.00 0.00 4.02
4345 4380 1.272147 GCAACTTCCTTCCCTGACCAT 60.272 52.381 0.00 0.00 0.00 3.55
4346 4381 2.440409 CAACTTCCTTCCCTGACCATG 58.560 52.381 0.00 0.00 0.00 3.66
4347 4382 1.747444 ACTTCCTTCCCTGACCATGT 58.253 50.000 0.00 0.00 0.00 3.21
4348 4383 1.352352 ACTTCCTTCCCTGACCATGTG 59.648 52.381 0.00 0.00 0.00 3.21
4349 4384 0.698238 TTCCTTCCCTGACCATGTGG 59.302 55.000 0.00 0.00 42.17 4.17
4350 4385 0.178876 TCCTTCCCTGACCATGTGGA 60.179 55.000 5.96 0.00 38.94 4.02
4351 4386 0.254178 CCTTCCCTGACCATGTGGAG 59.746 60.000 5.96 0.00 38.94 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.005037 CTGGTGGACAAGTGCGCTA 60.005 57.895 9.73 0.00 0.00 4.26
17 18 1.270147 GGTGCAACTCTACGAACTGGT 60.270 52.381 0.00 0.00 36.74 4.00
38 39 1.586422 GTCCATGATGTGCGCACTAT 58.414 50.000 37.59 28.34 0.00 2.12
59 60 4.096081 CCTCAAGATGTGAAAGAAGATGGC 59.904 45.833 0.00 0.00 35.22 4.40
110 111 1.421410 ATCGACGATGCGAAGGTTGC 61.421 55.000 10.09 0.00 44.22 4.17
126 127 0.179140 CAACAAAATCCCCCGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
157 158 1.535462 CACAGGTTCATCCAACGTTCC 59.465 52.381 0.00 0.00 39.02 3.62
176 177 2.111384 GAAGGAGGGTGAGATGCTACA 58.889 52.381 0.00 0.00 0.00 2.74
182 183 1.479709 CGACAGAAGGAGGGTGAGAT 58.520 55.000 0.00 0.00 0.00 2.75
196 197 3.425404 CAATTTAAACGCCATCCGACAG 58.575 45.455 0.00 0.00 41.02 3.51
220 223 2.359478 GACCGGCCGTCCACAATT 60.359 61.111 26.12 0.00 35.23 2.32
250 253 1.994779 GAGCGGTTCAATGCCAATTTG 59.005 47.619 0.00 0.00 0.00 2.32
259 262 2.680913 GCTGTGCGAGCGGTTCAAT 61.681 57.895 0.00 0.00 38.15 2.57
260 263 3.345808 GCTGTGCGAGCGGTTCAA 61.346 61.111 0.00 0.00 38.15 2.69
270 273 3.114616 CTTGGGACGAGCTGTGCG 61.115 66.667 0.00 0.00 40.35 5.34
301 304 1.450312 GCTCATGAACCTCCCACCG 60.450 63.158 0.00 0.00 0.00 4.94
302 305 1.077429 GGCTCATGAACCTCCCACC 60.077 63.158 7.95 0.00 0.00 4.61
303 306 0.257039 ATGGCTCATGAACCTCCCAC 59.743 55.000 15.99 0.00 0.00 4.61
304 307 0.256752 CATGGCTCATGAACCTCCCA 59.743 55.000 15.99 8.55 43.81 4.37
305 308 0.548031 TCATGGCTCATGAACCTCCC 59.452 55.000 15.99 3.38 46.17 4.30
313 316 3.113745 GCCCGTTCATGGCTCATG 58.886 61.111 8.41 8.41 45.70 3.07
319 322 0.748005 AAGATTCGGCCCGTTCATGG 60.748 55.000 1.63 0.00 0.00 3.66
320 323 1.094785 AAAGATTCGGCCCGTTCATG 58.905 50.000 1.63 0.00 0.00 3.07
321 324 2.702592 TAAAGATTCGGCCCGTTCAT 57.297 45.000 1.63 0.00 0.00 2.57
324 327 1.680860 CCCTTAAAGATTCGGCCCGTT 60.681 52.381 1.63 0.00 0.00 4.44
337 340 5.391577 ACTGGTTTCCTACAACCCTTAAA 57.608 39.130 0.17 0.00 45.18 1.52
346 349 4.658063 CCATGGTTAACTGGTTTCCTACA 58.342 43.478 2.57 0.00 0.00 2.74
359 362 2.418197 GCTACTCTGACGCCATGGTTAA 60.418 50.000 14.67 0.00 0.00 2.01
397 400 1.131126 CTCCAAAACTATGCCACAGCG 59.869 52.381 0.00 0.00 44.31 5.18
405 408 5.334879 CCCGTTGAGTTTCTCCAAAACTATG 60.335 44.000 3.33 0.00 40.27 2.23
410 413 2.303175 CCCCGTTGAGTTTCTCCAAAA 58.697 47.619 0.00 0.00 0.00 2.44
418 421 1.210967 TCAACTGACCCCGTTGAGTTT 59.789 47.619 1.82 0.00 44.03 2.66
424 427 1.779061 ATGGCTCAACTGACCCCGTT 61.779 55.000 0.00 0.00 0.00 4.44
457 460 0.179111 CGCGGTTCAAGCCAGATCTA 60.179 55.000 0.00 0.00 0.00 1.98
491 494 4.388499 CACCCCCGAACTCCGTGG 62.388 72.222 0.00 0.00 35.46 4.94
496 499 2.741211 GCGTTCACCCCCGAACTC 60.741 66.667 0.00 0.00 42.57 3.01
592 595 0.250901 AGCGGCAGGACAGATTTGTT 60.251 50.000 1.45 0.00 37.76 2.83
595 598 0.107945 GAGAGCGGCAGGACAGATTT 60.108 55.000 1.45 0.00 0.00 2.17
617 620 0.385974 CTTTTTGTCCAAGAGCGCCG 60.386 55.000 2.29 0.00 0.00 6.46
618 621 0.668535 ACTTTTTGTCCAAGAGCGCC 59.331 50.000 2.29 0.00 0.00 6.53
659 662 2.470999 GCAAGCATGTTGTTTGGTTACG 59.529 45.455 6.28 0.00 38.72 3.18
706 709 5.592104 TTCTATGGAACGTGCATTAGAGA 57.408 39.130 0.00 0.00 29.08 3.10
718 721 4.799564 TGCCCACAAAATTCTATGGAAC 57.200 40.909 0.00 0.00 33.80 3.62
719 722 4.020662 GGTTGCCCACAAAATTCTATGGAA 60.021 41.667 0.00 0.00 37.58 3.53
720 723 3.513515 GGTTGCCCACAAAATTCTATGGA 59.486 43.478 3.90 0.00 37.58 3.41
721 724 3.260380 TGGTTGCCCACAAAATTCTATGG 59.740 43.478 0.00 0.00 37.58 2.74
722 725 4.533919 TGGTTGCCCACAAAATTCTATG 57.466 40.909 0.00 0.00 37.58 2.23
795 798 6.506500 CTGACTCAGCAATACAGGATTTTT 57.493 37.500 0.00 0.00 0.00 1.94
802 805 2.093816 TCAGCCTGACTCAGCAATACAG 60.094 50.000 0.00 0.00 0.00 2.74
849 852 3.347216 ACGCTTCTTAGGTTCCTACGTA 58.653 45.455 8.86 0.00 0.00 3.57
850 853 2.165998 ACGCTTCTTAGGTTCCTACGT 58.834 47.619 0.00 0.00 0.00 3.57
851 854 2.935481 ACGCTTCTTAGGTTCCTACG 57.065 50.000 0.00 1.85 0.00 3.51
864 868 2.860735 CCTGCTACAGTATGAACGCTTC 59.139 50.000 0.00 0.00 39.69 3.86
867 871 1.134788 ACCCTGCTACAGTATGAACGC 60.135 52.381 0.00 0.00 39.69 4.84
950 954 2.530701 ACCGAGAGTGGAATGAAGAGT 58.469 47.619 0.00 0.00 0.00 3.24
1674 1687 3.153919 CGATTGTTTCTTTGGGAAGGGA 58.846 45.455 0.00 0.00 35.16 4.20
1683 1696 1.804748 GACGGAGGCGATTGTTTCTTT 59.195 47.619 0.00 0.00 0.00 2.52
1716 1729 2.113986 GGACCTGGTTGCTGCTGT 59.886 61.111 0.00 0.00 0.00 4.40
1762 1775 3.731766 AAGGCACCAACTTGGGCGT 62.732 57.895 12.62 10.75 43.37 5.68
1923 1936 0.749454 GGCCATACACCAGCTTGAGG 60.749 60.000 0.00 0.00 0.00 3.86
2295 2308 2.932614 CAGATCTGGCTTTGTTACCTCG 59.067 50.000 15.38 0.00 0.00 4.63
2397 2410 2.429971 TGCAAACTGAAGCAACCAATCA 59.570 40.909 0.00 0.00 37.90 2.57
2634 2647 5.768980 TTGGAGAAGATTCATCAAGAGGT 57.231 39.130 0.00 0.00 0.00 3.85
2682 2695 1.352352 AGCACCCAGTCATAAGCTGTT 59.648 47.619 0.00 0.00 32.41 3.16
2843 2856 2.166907 ATCCCAGGTAGACAGGTCAG 57.833 55.000 1.84 0.00 0.00 3.51
3240 3253 4.219070 TCAGAGACTGCATTGGAAAAATGG 59.781 41.667 0.00 0.00 0.00 3.16
3426 3442 6.573664 TGATACCAAACCATGAAGAAGTTG 57.426 37.500 0.00 0.00 0.00 3.16
3518 3535 5.368256 ACAGATCAAGATGTTTGAAGCAC 57.632 39.130 0.00 0.00 31.55 4.40
3699 3716 4.054671 GAGGCTACAATCTGTATCACTGC 58.945 47.826 0.00 0.00 31.66 4.40
3700 3717 5.528043 AGAGGCTACAATCTGTATCACTG 57.472 43.478 0.00 0.00 31.66 3.66
3701 3718 6.607600 TGTAAGAGGCTACAATCTGTATCACT 59.392 38.462 0.00 0.00 31.66 3.41
3702 3719 6.806751 TGTAAGAGGCTACAATCTGTATCAC 58.193 40.000 0.00 0.00 31.66 3.06
3703 3720 6.833933 TCTGTAAGAGGCTACAATCTGTATCA 59.166 38.462 0.00 0.00 38.67 2.15
3704 3721 7.278461 TCTGTAAGAGGCTACAATCTGTATC 57.722 40.000 0.00 0.00 38.67 2.24
3720 3737 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3721 3738 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3722 3739 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3723 3740 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3724 3741 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3725 3742 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3726 3743 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3727 3744 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3728 3745 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3729 3746 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3730 3747 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3731 3748 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3732 3749 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3733 3750 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3734 3751 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3735 3752 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3736 3753 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3737 3754 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3738 3755 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3739 3756 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3740 3757 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3741 3758 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3742 3759 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3743 3760 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3744 3761 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3745 3762 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3746 3763 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3756 3773 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3757 3774 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3758 3775 0.179001 AAAGGGTCCGACCACTTTGG 60.179 55.000 22.93 0.00 41.02 3.28
3759 3776 1.202770 AGAAAGGGTCCGACCACTTTG 60.203 52.381 26.16 0.00 41.02 2.77
3760 3777 1.071857 GAGAAAGGGTCCGACCACTTT 59.928 52.381 23.42 23.42 41.02 2.66
3761 3778 0.685660 GAGAAAGGGTCCGACCACTT 59.314 55.000 19.43 15.68 41.02 3.16
3762 3779 0.471211 TGAGAAAGGGTCCGACCACT 60.471 55.000 19.43 10.80 41.02 4.00
3763 3780 0.037232 CTGAGAAAGGGTCCGACCAC 60.037 60.000 19.43 8.70 41.02 4.16
3764 3781 0.178944 TCTGAGAAAGGGTCCGACCA 60.179 55.000 19.43 0.00 41.02 4.02
3765 3782 0.246910 GTCTGAGAAAGGGTCCGACC 59.753 60.000 9.30 9.30 37.60 4.79
3766 3783 0.246910 GGTCTGAGAAAGGGTCCGAC 59.753 60.000 0.00 0.00 0.00 4.79
3767 3784 0.903454 GGGTCTGAGAAAGGGTCCGA 60.903 60.000 0.00 0.00 0.00 4.55
3768 3785 0.905337 AGGGTCTGAGAAAGGGTCCG 60.905 60.000 0.00 0.00 0.00 4.79
3769 3786 0.615850 CAGGGTCTGAGAAAGGGTCC 59.384 60.000 0.00 0.00 32.44 4.46
3770 3787 0.035915 GCAGGGTCTGAGAAAGGGTC 60.036 60.000 0.00 0.00 32.44 4.46
3771 3788 0.768221 TGCAGGGTCTGAGAAAGGGT 60.768 55.000 0.00 0.00 32.44 4.34
3772 3789 0.322008 GTGCAGGGTCTGAGAAAGGG 60.322 60.000 0.00 0.00 32.44 3.95
3773 3790 0.397941 TGTGCAGGGTCTGAGAAAGG 59.602 55.000 0.00 0.00 32.44 3.11
3774 3791 2.149578 CTTGTGCAGGGTCTGAGAAAG 58.850 52.381 0.00 0.00 32.44 2.62
3775 3792 1.815408 GCTTGTGCAGGGTCTGAGAAA 60.815 52.381 0.00 0.00 39.41 2.52
3776 3793 0.250467 GCTTGTGCAGGGTCTGAGAA 60.250 55.000 0.00 0.00 39.41 2.87
3777 3794 1.372683 GCTTGTGCAGGGTCTGAGA 59.627 57.895 0.00 0.00 39.41 3.27
3778 3795 2.031516 CGCTTGTGCAGGGTCTGAG 61.032 63.158 0.00 0.00 39.64 3.35
3779 3796 2.031012 CGCTTGTGCAGGGTCTGA 59.969 61.111 0.00 0.00 39.64 3.27
3780 3797 3.052082 CCGCTTGTGCAGGGTCTG 61.052 66.667 0.00 0.00 39.64 3.51
3781 3798 4.335647 CCCGCTTGTGCAGGGTCT 62.336 66.667 0.00 0.00 43.24 3.85
3782 3799 4.329545 TCCCGCTTGTGCAGGGTC 62.330 66.667 7.78 0.00 46.04 4.46
3783 3800 4.335647 CTCCCGCTTGTGCAGGGT 62.336 66.667 7.78 0.00 46.04 4.34
3785 3802 3.315142 TAGCTCCCGCTTGTGCAGG 62.315 63.158 0.00 0.00 46.47 4.85
3786 3803 2.103042 GTAGCTCCCGCTTGTGCAG 61.103 63.158 0.00 0.00 46.47 4.41
3787 3804 2.047274 GTAGCTCCCGCTTGTGCA 60.047 61.111 0.00 0.00 46.47 4.57
3788 3805 1.450312 ATGTAGCTCCCGCTTGTGC 60.450 57.895 0.00 0.00 46.47 4.57
3789 3806 1.709147 GCATGTAGCTCCCGCTTGTG 61.709 60.000 0.00 0.00 46.47 3.33
3790 3807 1.450312 GCATGTAGCTCCCGCTTGT 60.450 57.895 0.00 0.00 46.47 3.16
3791 3808 0.816825 ATGCATGTAGCTCCCGCTTG 60.817 55.000 0.00 0.00 46.47 4.01
3792 3809 0.107017 AATGCATGTAGCTCCCGCTT 60.107 50.000 0.00 0.00 46.47 4.68
3794 3811 1.650912 CAATGCATGTAGCTCCCGC 59.349 57.895 0.00 0.00 45.94 6.13
3795 3812 1.168407 CCCAATGCATGTAGCTCCCG 61.168 60.000 0.00 0.00 45.94 5.14
3796 3813 0.825010 CCCCAATGCATGTAGCTCCC 60.825 60.000 0.00 0.00 45.94 4.30
3797 3814 1.458639 GCCCCAATGCATGTAGCTCC 61.459 60.000 0.00 0.00 45.94 4.70
3798 3815 0.466922 AGCCCCAATGCATGTAGCTC 60.467 55.000 0.00 0.00 45.94 4.09
3799 3816 0.754217 CAGCCCCAATGCATGTAGCT 60.754 55.000 0.00 3.80 45.94 3.32
3800 3817 1.737816 CAGCCCCAATGCATGTAGC 59.262 57.895 0.00 1.14 45.96 3.58
3801 3818 1.737816 GCAGCCCCAATGCATGTAG 59.262 57.895 0.00 0.00 43.31 2.74
3802 3819 1.757731 GGCAGCCCCAATGCATGTA 60.758 57.895 0.00 0.00 45.68 2.29
3803 3820 3.078836 GGCAGCCCCAATGCATGT 61.079 61.111 0.00 0.00 45.68 3.21
3804 3821 1.906105 AAAGGCAGCCCCAATGCATG 61.906 55.000 8.22 0.00 45.68 4.06
3805 3822 1.202769 AAAAGGCAGCCCCAATGCAT 61.203 50.000 8.22 0.00 45.68 3.96
3806 3823 1.417288 AAAAAGGCAGCCCCAATGCA 61.417 50.000 8.22 0.00 45.68 3.96
3807 3824 1.376086 AAAAAGGCAGCCCCAATGC 59.624 52.632 8.22 0.00 43.09 3.56
3822 3839 7.936847 AGGTGTGACAATCTGTATCACTAAAAA 59.063 33.333 5.32 0.00 42.65 1.94
3823 3840 7.387673 CAGGTGTGACAATCTGTATCACTAAAA 59.612 37.037 8.46 0.00 42.65 1.52
3824 3841 6.873605 CAGGTGTGACAATCTGTATCACTAAA 59.126 38.462 8.46 0.00 42.65 1.85
3825 3842 6.210584 TCAGGTGTGACAATCTGTATCACTAA 59.789 38.462 14.09 0.00 42.65 2.24
3826 3843 5.714806 TCAGGTGTGACAATCTGTATCACTA 59.285 40.000 14.09 0.00 42.65 2.74
3859 3876 8.314751 CGTCTTATAATAATGAATGGAGGGAGT 58.685 37.037 0.00 0.00 0.00 3.85
3860 3877 8.314751 ACGTCTTATAATAATGAATGGAGGGAG 58.685 37.037 0.00 0.00 0.00 4.30
3861 3878 8.202461 ACGTCTTATAATAATGAATGGAGGGA 57.798 34.615 0.00 0.00 0.00 4.20
3862 3879 8.848474 AACGTCTTATAATAATGAATGGAGGG 57.152 34.615 0.00 0.00 0.00 4.30
3870 3887 8.609176 GCTGTCCAAAACGTCTTATAATAATGA 58.391 33.333 0.00 0.00 0.00 2.57
3871 3888 8.612619 AGCTGTCCAAAACGTCTTATAATAATG 58.387 33.333 0.00 0.00 0.00 1.90
3872 3889 8.732746 AGCTGTCCAAAACGTCTTATAATAAT 57.267 30.769 0.00 0.00 0.00 1.28
3873 3890 9.309516 CTAGCTGTCCAAAACGTCTTATAATAA 57.690 33.333 0.00 0.00 0.00 1.40
3874 3891 7.437267 GCTAGCTGTCCAAAACGTCTTATAATA 59.563 37.037 7.70 0.00 0.00 0.98
3875 3892 6.258068 GCTAGCTGTCCAAAACGTCTTATAAT 59.742 38.462 7.70 0.00 0.00 1.28
3876 3893 5.579511 GCTAGCTGTCCAAAACGTCTTATAA 59.420 40.000 7.70 0.00 0.00 0.98
3877 3894 5.105473 AGCTAGCTGTCCAAAACGTCTTATA 60.105 40.000 18.57 0.00 0.00 0.98
3878 3895 3.933332 GCTAGCTGTCCAAAACGTCTTAT 59.067 43.478 7.70 0.00 0.00 1.73
3879 3896 3.006537 AGCTAGCTGTCCAAAACGTCTTA 59.993 43.478 18.57 0.00 0.00 2.10
3880 3897 2.143925 GCTAGCTGTCCAAAACGTCTT 58.856 47.619 7.70 0.00 0.00 3.01
3881 3898 1.344763 AGCTAGCTGTCCAAAACGTCT 59.655 47.619 18.57 0.00 0.00 4.18
3882 3899 1.797025 AGCTAGCTGTCCAAAACGTC 58.203 50.000 18.57 0.00 0.00 4.34
3883 3900 2.256117 AAGCTAGCTGTCCAAAACGT 57.744 45.000 20.16 0.00 0.00 3.99
3884 3901 2.548057 TCAAAGCTAGCTGTCCAAAACG 59.452 45.455 20.16 0.00 0.00 3.60
3885 3902 4.036852 AGTTCAAAGCTAGCTGTCCAAAAC 59.963 41.667 20.16 15.78 0.00 2.43
3886 3903 4.036734 CAGTTCAAAGCTAGCTGTCCAAAA 59.963 41.667 20.16 4.67 0.00 2.44
3887 3904 3.565482 CAGTTCAAAGCTAGCTGTCCAAA 59.435 43.478 20.16 3.87 0.00 3.28
3888 3905 3.141398 CAGTTCAAAGCTAGCTGTCCAA 58.859 45.455 20.16 4.78 0.00 3.53
3889 3906 2.104792 ACAGTTCAAAGCTAGCTGTCCA 59.895 45.455 20.16 0.00 35.78 4.02
3890 3907 2.772287 ACAGTTCAAAGCTAGCTGTCC 58.228 47.619 20.16 2.70 35.78 4.02
3891 3908 4.820284 AAACAGTTCAAAGCTAGCTGTC 57.180 40.909 20.16 0.26 39.19 3.51
3892 3909 4.202050 CCAAAACAGTTCAAAGCTAGCTGT 60.202 41.667 20.16 10.61 41.51 4.40
3893 3910 4.293415 CCAAAACAGTTCAAAGCTAGCTG 58.707 43.478 20.16 7.93 0.00 4.24
3894 3911 3.319122 CCCAAAACAGTTCAAAGCTAGCT 59.681 43.478 12.68 12.68 0.00 3.32
3895 3912 3.642705 CCCAAAACAGTTCAAAGCTAGC 58.357 45.455 6.62 6.62 0.00 3.42
3896 3913 3.068024 TGCCCAAAACAGTTCAAAGCTAG 59.932 43.478 0.00 0.00 0.00 3.42
3897 3914 3.027412 TGCCCAAAACAGTTCAAAGCTA 58.973 40.909 0.00 0.00 0.00 3.32
3898 3915 1.830477 TGCCCAAAACAGTTCAAAGCT 59.170 42.857 0.00 0.00 0.00 3.74
3899 3916 1.933181 GTGCCCAAAACAGTTCAAAGC 59.067 47.619 0.00 0.00 0.00 3.51
3900 3917 3.189285 CAGTGCCCAAAACAGTTCAAAG 58.811 45.455 0.00 0.00 0.00 2.77
3901 3918 2.564947 ACAGTGCCCAAAACAGTTCAAA 59.435 40.909 0.00 0.00 0.00 2.69
3902 3919 2.165437 GACAGTGCCCAAAACAGTTCAA 59.835 45.455 0.00 0.00 0.00 2.69
3903 3920 1.748493 GACAGTGCCCAAAACAGTTCA 59.252 47.619 0.00 0.00 0.00 3.18
3904 3921 2.024414 AGACAGTGCCCAAAACAGTTC 58.976 47.619 0.00 0.00 0.00 3.01
3905 3922 1.750778 CAGACAGTGCCCAAAACAGTT 59.249 47.619 0.00 0.00 0.00 3.16
3906 3923 1.064758 TCAGACAGTGCCCAAAACAGT 60.065 47.619 0.00 0.00 0.00 3.55
3907 3924 1.679139 TCAGACAGTGCCCAAAACAG 58.321 50.000 0.00 0.00 0.00 3.16
3908 3925 2.136298 TTCAGACAGTGCCCAAAACA 57.864 45.000 0.00 0.00 0.00 2.83
3909 3926 3.181476 ACAATTCAGACAGTGCCCAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
3910 3927 3.030291 ACAATTCAGACAGTGCCCAAAA 58.970 40.909 0.00 0.00 0.00 2.44
3911 3928 2.622942 GACAATTCAGACAGTGCCCAAA 59.377 45.455 0.00 0.00 0.00 3.28
3912 3929 2.158623 AGACAATTCAGACAGTGCCCAA 60.159 45.455 0.00 0.00 0.00 4.12
3913 3930 1.421268 AGACAATTCAGACAGTGCCCA 59.579 47.619 0.00 0.00 0.00 5.36
3914 3931 2.191128 AGACAATTCAGACAGTGCCC 57.809 50.000 0.00 0.00 0.00 5.36
3915 3932 4.193826 TCTAGACAATTCAGACAGTGCC 57.806 45.455 0.00 0.00 0.00 5.01
3916 3933 4.090642 CGTTCTAGACAATTCAGACAGTGC 59.909 45.833 0.00 0.00 0.00 4.40
3917 3934 5.223382 ACGTTCTAGACAATTCAGACAGTG 58.777 41.667 0.00 0.00 0.00 3.66
3918 3935 5.241949 AGACGTTCTAGACAATTCAGACAGT 59.758 40.000 0.00 0.00 0.00 3.55
3919 3936 5.704888 AGACGTTCTAGACAATTCAGACAG 58.295 41.667 0.00 0.00 0.00 3.51
3920 3937 5.707242 AGACGTTCTAGACAATTCAGACA 57.293 39.130 0.00 0.00 0.00 3.41
3921 3938 9.784680 TTATAAGACGTTCTAGACAATTCAGAC 57.215 33.333 0.00 0.00 0.00 3.51
3928 3945 9.970395 TTCACTTTTATAAGACGTTCTAGACAA 57.030 29.630 0.00 0.00 35.30 3.18
3929 3946 9.403110 GTTCACTTTTATAAGACGTTCTAGACA 57.597 33.333 0.00 0.00 35.30 3.41
3930 3947 9.403110 TGTTCACTTTTATAAGACGTTCTAGAC 57.597 33.333 0.00 0.00 35.30 2.59
3931 3948 9.622004 CTGTTCACTTTTATAAGACGTTCTAGA 57.378 33.333 0.00 0.00 35.30 2.43
3932 3949 9.622004 TCTGTTCACTTTTATAAGACGTTCTAG 57.378 33.333 0.00 0.00 35.30 2.43
3933 3950 9.622004 CTCTGTTCACTTTTATAAGACGTTCTA 57.378 33.333 0.00 0.00 35.30 2.10
3934 3951 7.599245 CCTCTGTTCACTTTTATAAGACGTTCT 59.401 37.037 0.00 0.00 35.30 3.01
3935 3952 7.597743 TCCTCTGTTCACTTTTATAAGACGTTC 59.402 37.037 0.00 0.00 35.30 3.95
3936 3953 7.439381 TCCTCTGTTCACTTTTATAAGACGTT 58.561 34.615 0.00 0.00 35.30 3.99
3937 3954 6.989659 TCCTCTGTTCACTTTTATAAGACGT 58.010 36.000 0.00 0.00 35.30 4.34
3938 3955 7.599245 ACTTCCTCTGTTCACTTTTATAAGACG 59.401 37.037 0.00 0.00 35.30 4.18
3939 3956 8.834749 ACTTCCTCTGTTCACTTTTATAAGAC 57.165 34.615 0.00 0.00 35.30 3.01
3941 3958 9.930693 ACTACTTCCTCTGTTCACTTTTATAAG 57.069 33.333 0.00 0.00 37.40 1.73
3944 3961 9.091220 ACTACTACTTCCTCTGTTCACTTTTAT 57.909 33.333 0.00 0.00 0.00 1.40
3945 3962 8.474710 ACTACTACTTCCTCTGTTCACTTTTA 57.525 34.615 0.00 0.00 0.00 1.52
3946 3963 7.362802 ACTACTACTTCCTCTGTTCACTTTT 57.637 36.000 0.00 0.00 0.00 2.27
3947 3964 6.980416 ACTACTACTTCCTCTGTTCACTTT 57.020 37.500 0.00 0.00 0.00 2.66
3948 3965 6.980416 AACTACTACTTCCTCTGTTCACTT 57.020 37.500 0.00 0.00 0.00 3.16
3949 3966 6.778559 AGAAACTACTACTTCCTCTGTTCACT 59.221 38.462 0.00 0.00 0.00 3.41
3950 3967 6.983984 AGAAACTACTACTTCCTCTGTTCAC 58.016 40.000 0.00 0.00 0.00 3.18
3951 3968 7.598759 AAGAAACTACTACTTCCTCTGTTCA 57.401 36.000 0.00 0.00 0.00 3.18
3952 3969 8.795513 ACTAAGAAACTACTACTTCCTCTGTTC 58.204 37.037 0.00 0.00 0.00 3.18
3953 3970 8.709272 ACTAAGAAACTACTACTTCCTCTGTT 57.291 34.615 0.00 0.00 0.00 3.16
3954 3971 8.709272 AACTAAGAAACTACTACTTCCTCTGT 57.291 34.615 0.00 0.00 0.00 3.41
4135 4159 8.587608 TCTGGAGTCAATAAATCTGCAAAATTT 58.412 29.630 10.56 10.56 0.00 1.82
4136 4160 8.125978 TCTGGAGTCAATAAATCTGCAAAATT 57.874 30.769 0.00 0.00 0.00 1.82
4152 4186 1.712056 TTTCCCGTTCTCTGGAGTCA 58.288 50.000 0.00 0.00 30.91 3.41
4183 4218 9.731819 CTCTGATATGAAATTGAACTGAATTGG 57.268 33.333 0.00 0.00 0.00 3.16
4222 4257 6.769822 CCAACATGCTCTTAGTCATAGGAAAT 59.230 38.462 0.00 0.00 0.00 2.17
4248 4283 1.086634 GTTGCGGAGTGGAGCAGATC 61.087 60.000 0.00 0.00 44.72 2.75
4249 4284 1.078848 GTTGCGGAGTGGAGCAGAT 60.079 57.895 0.00 0.00 44.72 2.90
4250 4285 2.159819 GAGTTGCGGAGTGGAGCAGA 62.160 60.000 0.00 0.00 44.72 4.26
4251 4286 1.739562 GAGTTGCGGAGTGGAGCAG 60.740 63.158 0.00 0.00 44.72 4.24
4252 4287 2.343758 GAGTTGCGGAGTGGAGCA 59.656 61.111 0.00 0.00 42.15 4.26
4253 4288 2.435059 GGAGTTGCGGAGTGGAGC 60.435 66.667 0.00 0.00 0.00 4.70
4254 4289 2.125912 CGGAGTTGCGGAGTGGAG 60.126 66.667 0.00 0.00 0.00 3.86
4255 4290 4.373116 GCGGAGTTGCGGAGTGGA 62.373 66.667 0.00 0.00 0.00 4.02
4256 4291 4.379243 AGCGGAGTTGCGGAGTGG 62.379 66.667 0.00 0.00 40.67 4.00
4257 4292 3.114616 CAGCGGAGTTGCGGAGTG 61.115 66.667 0.00 0.00 40.67 3.51
4258 4293 3.575351 GACAGCGGAGTTGCGGAGT 62.575 63.158 0.00 0.00 44.63 3.85
4259 4294 2.811317 GACAGCGGAGTTGCGGAG 60.811 66.667 0.00 0.00 44.63 4.63
4260 4295 4.717629 CGACAGCGGAGTTGCGGA 62.718 66.667 0.00 0.00 44.63 5.54
4262 4297 3.767230 CACGACAGCGGAGTTGCG 61.767 66.667 0.00 0.00 44.63 4.85
4263 4298 4.077188 GCACGACAGCGGAGTTGC 62.077 66.667 0.00 0.00 44.63 4.17
4264 4299 2.243957 TTGCACGACAGCGGAGTTG 61.244 57.895 0.00 0.00 46.75 3.16
4265 4300 2.108157 TTGCACGACAGCGGAGTT 59.892 55.556 0.00 0.00 43.17 3.01
4266 4301 2.644555 AAGTTGCACGACAGCGGAGT 62.645 55.000 0.00 0.00 43.17 3.85
4267 4302 1.498865 AAAGTTGCACGACAGCGGAG 61.499 55.000 0.00 0.00 43.17 4.63
4268 4303 0.249531 TAAAGTTGCACGACAGCGGA 60.250 50.000 0.00 0.00 43.17 5.54
4269 4304 0.110823 GTAAAGTTGCACGACAGCGG 60.111 55.000 0.00 0.00 43.17 5.52
4270 4305 0.110823 GGTAAAGTTGCACGACAGCG 60.111 55.000 0.00 0.00 44.79 5.18
4271 4306 0.110823 CGGTAAAGTTGCACGACAGC 60.111 55.000 0.00 0.00 0.00 4.40
4272 4307 0.511221 CCGGTAAAGTTGCACGACAG 59.489 55.000 0.00 0.00 0.00 3.51
4273 4308 0.179078 ACCGGTAAAGTTGCACGACA 60.179 50.000 4.49 0.00 0.00 4.35
4274 4309 0.939419 AACCGGTAAAGTTGCACGAC 59.061 50.000 8.00 0.00 0.00 4.34
4275 4310 0.938713 CAACCGGTAAAGTTGCACGA 59.061 50.000 8.00 0.00 38.31 4.35
4276 4311 0.040781 CCAACCGGTAAAGTTGCACG 60.041 55.000 8.00 0.00 42.63 5.34
4277 4312 0.318360 GCCAACCGGTAAAGTTGCAC 60.318 55.000 8.00 0.00 42.63 4.57
4278 4313 0.466555 AGCCAACCGGTAAAGTTGCA 60.467 50.000 8.00 0.00 42.63 4.08
4279 4314 0.039527 CAGCCAACCGGTAAAGTTGC 60.040 55.000 8.00 0.00 42.63 4.17
4280 4315 1.600023 TCAGCCAACCGGTAAAGTTG 58.400 50.000 8.00 8.28 43.41 3.16
4281 4316 2.433436 GATCAGCCAACCGGTAAAGTT 58.567 47.619 8.00 0.00 33.28 2.66
4282 4317 1.339727 GGATCAGCCAACCGGTAAAGT 60.340 52.381 8.00 0.00 36.34 2.66
4283 4318 1.339631 TGGATCAGCCAACCGGTAAAG 60.340 52.381 8.00 0.00 45.87 1.85
4284 4319 0.693622 TGGATCAGCCAACCGGTAAA 59.306 50.000 8.00 0.00 45.87 2.01
4285 4320 2.378211 TGGATCAGCCAACCGGTAA 58.622 52.632 8.00 0.00 45.87 2.85
4286 4321 4.138665 TGGATCAGCCAACCGGTA 57.861 55.556 8.00 0.00 45.87 4.02
4293 4328 0.326904 AGGACATCCTGGATCAGCCA 60.327 55.000 6.13 0.00 46.55 4.75
4294 4329 2.537600 AGGACATCCTGGATCAGCC 58.462 57.895 6.13 8.41 46.55 4.85
4318 4353 1.300481 GGAAGGAAGTTGCTATCCGC 58.700 55.000 0.00 0.00 40.78 5.54
4319 4354 1.486726 AGGGAAGGAAGTTGCTATCCG 59.513 52.381 14.69 0.00 40.78 4.18
4320 4355 2.505819 TCAGGGAAGGAAGTTGCTATCC 59.494 50.000 13.53 13.53 35.88 2.59
4321 4356 3.536570 GTCAGGGAAGGAAGTTGCTATC 58.463 50.000 0.00 0.00 0.00 2.08
4322 4357 2.239907 GGTCAGGGAAGGAAGTTGCTAT 59.760 50.000 0.00 0.00 0.00 2.97
4323 4358 1.628846 GGTCAGGGAAGGAAGTTGCTA 59.371 52.381 0.00 0.00 0.00 3.49
4324 4359 0.402121 GGTCAGGGAAGGAAGTTGCT 59.598 55.000 0.00 0.00 0.00 3.91
4325 4360 0.110486 TGGTCAGGGAAGGAAGTTGC 59.890 55.000 0.00 0.00 0.00 4.17
4326 4361 2.224867 ACATGGTCAGGGAAGGAAGTTG 60.225 50.000 0.00 0.00 0.00 3.16
4327 4362 2.065799 ACATGGTCAGGGAAGGAAGTT 58.934 47.619 0.00 0.00 0.00 2.66
4328 4363 1.352352 CACATGGTCAGGGAAGGAAGT 59.648 52.381 0.00 0.00 0.00 3.01
4329 4364 1.340405 CCACATGGTCAGGGAAGGAAG 60.340 57.143 0.00 0.00 0.00 3.46
4330 4365 0.698238 CCACATGGTCAGGGAAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
4331 4366 0.178876 TCCACATGGTCAGGGAAGGA 60.179 55.000 0.00 0.00 36.34 3.36
4332 4367 0.254178 CTCCACATGGTCAGGGAAGG 59.746 60.000 0.00 0.00 36.34 3.46
4333 4368 3.869623 CTCCACATGGTCAGGGAAG 57.130 57.895 0.00 0.00 36.34 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.