>input_sequence_34081
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-------------------------------------------ATGGGCAAGTCCGGCGCCAAAAAGAAGAAGCCCTCCC
CTT---------CCGCCACCGCCGCCGCCACCACAACCGCCGCCAAATCGCCGCCAGCCGCAGCAGAGCAGAAGGCCCCG
CCGCCCGCGCCCCCCGTAGCGAACGGGGCGGCGCAGCACCAGGCCCCGGCGGACCCCGGCGTGCTCCTGCGCCGCGCGCA
CGAGCTCAAGGAGGAGGGCAACCGCCTGTTCCAGTCGCGCGACTACGCCGGCGCGCTGCGGCAGTACGAGCTCGCCCTCC
GCCTTGCCCCGCGTGGCCATCCCGACCGCGCCGTCTTCCACAGCAACCGCGCCGCCTGCCTCCTGCAGCTCCGCCCCGTC
GACCACAAGGCCGTCGCGGAGGAGTGCTCCCTCGCGCTCCAGGCCGAGCCGCGCTTCCCGCGAGCCCTTCTCCGCCGGGC
CCGCGCACTTGAGGCGCTCGGCCGCTACGAGCTCGCACTCGCCGACACCCTCGCGCTCCTCGCCCTCGACCCCAACCACC
GCGACGCTATCGACCTCTCCCACCGCCTTCGCTCCCGCATCTCCTCCTCCTCCTCCTCCTCCACGGCCTCCGCCGCCTCC
ACCCACGAACCCACCAGCCGCCCTTCCCCCGCCGCCCTCGGTGCCTCGGCCGTTGTGGCCGGCCTTGGCCCATCCCTCCC
TTCCCGTCCCTTCCCAAAGAAACAATCGCCTCCGTCGCCTCCTCCTCCACAGCAGCAACCAGGTCCTGCGATGACTAAAT
TTAATTCTTCGCCAACGCCCAAGTTGGTGCCTTTCTCCAACTCTCCGTCATCTTCTGCCAAGGCTTCAACTGCTGATATT
TCTCAGAAGACTGTGCCAGCACTGTCAGTGCCCTCAACCCAACCAGTGACGGAGACATCGCTCATTAACAGGAAGGTTGT
GACGAGATGGAGGCCCCTCAAGCTGGTGTATGGCCATGACATTAGGCTTGGGGAGATGCCTGAAAAATGCAGCTTCCAGA
CGCTCCGGGAAGTTGTGGCGAAGCGCTTCCCATCATCCAAGGCTGTGTTGATGAAGTATAAGGATGCCGATGGTGATCTA
GTTACCATCACTTGCACATCAGAACTACGATTGGCCGAGGCTTGTGGTGTTGGCACCGATGCAATGGAAGGTGATACTAA
GCTCCCCATGTTGAGGCTGCACATTGTTGAAGTAAGTCCAGAGCAGGAGCCTCCGCTGCCAACAGAAGAGCAGAAGCTGG
AGGAGGAGGAGTTGTTGATCACCGGTGAGGATAGCTCTTCACATACTTCTGCAGAGGTAGCTAATGCCGAGGTAACAAAG
CCAGATCTGGAGAACGGAGTTGCTGAACAGAGCACTCTGACAGGGAAGAAAGATTGTGGCCATGCTGAGTGCAAGGAAGC
TGAGATTGATGATTGGTTGCTTCAGTTTGCAGAACTGTTCCGGAACCAGGTTGGGATCGATGCTGATGCACATCTGGACC
TTCATGAAGTAGGAATGGAGCTGTGCTCTGAAGCACTTGAGGAAACAGTGACCAGCGAGGAGGCCCAATCCCTATTTGAG
ATGGCTGCAGCAAAATTCCAGGAGGTCGCTGCCTTGGCGTTATTTAACTGGGGAAATGTGCACATGTGTGCAGCAAGGAA
GCGCATACCTCTTGATGAATCTTCTCCAAAGGAAATCATGTCTGCTCAGCTCCGAACAGCTTATGACTGGGTGCTAGAGA
GGTATGCTCTTGCAGGCCACAAGTATGAGGAGGCCCTGAACATCAAGCAAGATTTCTATGAAGGGCTTCTTGCTTTAGGC
CAGCAACACTTTGAGACCGCAAAGCTTCACTGGTCATTTGCATTGGCAGACAAGGCTGACCTGTCTACCTGGGATTCTTC
AGAGACATTCAAGCTTTTTGATAGTGCTGAGGAGAAGATGAGGGCTGCAACAGAGATGTGGGAGAAAGTGGAAGAACAGA
GAATGCTAGAGTTAAAAACACCTGGTGCGACCGAGAAGGATGAGGTGTTGAAGAAAAGAAAGAAGCAACACAGTGCAGAT
GGTCAAGGGGAGTTGACACCGGAGGAGGCAGCTGAGCAGGCAGCCGTAATGAGGCAACAGATTCACCTATTTTGGGGCAA
TATGCTTTTTGAGCGCTCTCAAGTGGAATTCAAGCTTGTTGTCGGTGATTGGAAGAAGAATCTCGATGCTTCTGTTGAAA
GGTTTAAGTTGGCTGGAGCTTCAGAATCAGATATCTCCACGGTGCTGAAGAACCATTTTTCCAAT---GCAGTCTCTGAG
TGCGAAGAGAAGAAAGTTATGCCTTCAGGCACAGGAAGTTCCCAAACAAGTGACGGCATTGATGATGAATCTGTGGTTGA
AAGCTAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr5A_1_TraesCS5A01G164700
CCCTAGCGCACTTGTCCACCAGTTCGTAGAGTTGCACCATAGTGCGCACATCATGGACCGCCATCTTCTTTCACATCTTG
AGGTCTGTGACGCCGTTGCGGAACACCGCGGCAACCTTCGCATCGTCGATGCGGGGGATTTTGTTGCGAACTTGGCTGGA
ACGTTGGATGAACCTGTGTAGCATCTCACCCTCCTTCTG--TCGGATGGCGTTTAAATTGGCAATTGTGGACGGCCGGTC
ACAAGTTCCCTTCAAATTGGCATTGAACCGCTCGCACAGCTCGTCCCAAGTTTCGATGGAATTCGGTGGGAGGTTCATGA
GCCATGAACGGGCCGAATCTTTAAGGGTTGTAGGAAACCAGTTAACCATGGCGTCAGAGTAGCCATGAGCCGCCTGGATC
GCTGTGGCATAGTTTTGGAGAAACTCAACGGGGTCAGTTGAGCCATCGTACCGCGACGATAGATCTGGCTTGAACCGCGG
AGGCAAGGCCACCCCACGGAGTTCGGGGGTGAACGCATGGCGCCCCACACCTATCGGCATAGCGCGGGCGCTCGGGGTGC
CCAGCGCAGGGCGCCCCGCCTCCGCCTTCTCTTGAACAAATCTGTCCTGCCGCTCTCACCGGCGCTCTTGGACAAAAAGT
TACCACGACGTATGTCTTTCACGTAACCAAACAACATGCTTGCAATCAAATAGCGTGCTGATGGCTTGTCTCTAATGCAC
GTTCCATAGAATTTTGTGGGCAACCAAACTAAATACAGAACATGTTTTTTTCCTGTATTGCTCTTTTTTAGCAAAAAAAA
AATCCTGTATTGCTGAGTCAGGCTGAGTGGAGTCAAAGATGCAACCAAAATTAC-GTAGGAACCTAAGAAGCGTTCATAC
TGTAGCAGGGTTGGACTAGGCCCAACGTTCTAGACCCCTCCGTCTCGTTAGGGTTCACTTCCTGCAAGGCTCTACTCTTC
ATTCCACTCTCGGTTTCCGCCTCCCCCTCCCCGACTTATCCCCATGGGCAAGTCCGGCGCCAAAAAGAAGAAGCCCTCCC
CTT---------CCGCCACCGCCGCCGCCACCACAACCGCCGCCAAATCGCCGCCAGCCGCAGCAGAGCAGAAGGCCCCG
CCGCCCGCGCCCCCCGTAGCGAACGGGGCGGCGCAGCACCAGGCCCCGGCGGACCCCGGCGTGCTCCTGCGCCGCGCGCA
CGAGCTCAAGGAGGAGGGCAACCGCCTGTTCCAGTCGCGCGACTACGCCGGCGCGCTGCGGCAGTACGAGCTCGCCCTCC
GCCTTGCCCCGCGTGGCCATCCCGACCGCGCCGTCTTCCACAGCAACCGCGCCGCCTGCCTCCTGCAGCTCCGCCCCGTC
GACCACAAGGCCGTCGCGGAGGAGTGCTCCCTCGCGCTCCAGGCCGAGCCGCGCTTCCCGCGAGCCCTTCTCCGCCGGGC
CCGCGCACTTGAGGCGCTCGGCCGCTACGAGCTCGCACTCGCCGACACCCTCGCGCTCCTCGCCCTCGACCCCAACCACC
GCGACGCTATCGACCTCTCCCACCGCCTTCGCTCCCGCATCTCCTCCTCCTCCTCCTCCTCCACGGCCTCCGCCGCCTCC
ACCCACGAACCCACCAGCCGCCCTTCCCCCGCCGCCCTCGGTGCCTCGGCCGTTGTGGCCGGCCTTGGCCCATCCCTCCC
TTCCCGTCCCTTCCCAAAGAAACAATCGCCTCCGTCGCCTCCTCCTCCACAGCAGCAACCAGGTCCTGCGATGACTAAAT
TTAATTCTTCGCCAACGCCCAAGTTGGTGCCTTTCTCCAACTCTCCGTCATCTTCTGCCAAGGCTTCAACTGCTGATATT
TCTCAGAAGACTGTGCCAGCACTGTCAGTGCCCTCAACCCAACCAGTGACGGAGACATCGCTCATTAACAGGAAGGTTGT
GACGAGATGGAGGCCCCTCAAGCTGGTGTATGGCCATGACATTAGGCTTGGGGAGATGCCTGAAAAATGCAGCTTCCAGA
CGCTCCGGGAAGTTGTGGCGAAGCGCTTCCCATCATCCAAGGCTGTGTTGATGAAGTATAAGGATGCCGATGGTGATCTA
GTTACCATCACTTGCACATCAGAACTACGATTGGCCGAGGCTTGTGGTGTTGGCACCGATGCAATGGAAGGTGATACTAA
GCTCCCCATGTTGAGGCTGCACATTGTTGAAGTAAGTCCAGAGCAGGAGCCTCCGCTGCCAACAGAAGAGCAGAAGCTGG
AGGAGGAGGAGTTGTTGATCACCGGTGAGGATAGCTCTTCACATACTTCTGCAGAGGTAGCTAATGCCGAGGTAACAAAG
CCAGATCTGGAGAACGGAGTTGCTGAACAGAGCACTCTGACAGGGAAGAAAGATTGTGGCCATGCTGAGTGCAAGGAAGC
TGAGATTGATGATTGGTTGCTTCAGTTTGCAGAACTGTTCCGGAACCAGGTTGGGATCGATGCTGATGCACATCTGGACC
TTCATGAAGTAGGAATGGAGCTGTGCTCTGAAGCACTTGAGGAAACAGTGACCAGCGAGGAGGCCCAATCCCTATTTGAG
ATGGCTGCAGCAAAATTCCAGGAGGTCGCTGCCTTGGCGTTATTTAACTGGGGAAATGTGCACATGTGTGCAGCAAGGAA
GCGCATACCTCTTGATGAATCTTCTCCAAAGGAAATCATGTCTGCTCAGCTCCGAACAGCTTATGACTGGGTGCTAGAGA
GGTATGCTCTTGCAGGCCACAAGTATGAGGAGGCCCTGAACATCAAGCAAGATTTCTATGAAGGGCTTCTTGCTTTAGGC
CAGCAACACTTTGAGACCGCAAAGCTTCACTGGTCATTTGCATTGGCAGACAAGGCTGACCTGTCTACCTGGGATTCTTC
AGAGACATTCAAGCTTTTTGATAGTGCTGAGGAGAAGATGAGGGCTGCAACAGAGATGTGGGAGAAAGTGGAAGAACAGA
GAATGCTAGAGTTAAAAACACCTGGTGCGACCGAGAAGGATGAGGTGTTGAAGAAAAGAAAGAAGCAACACAGTGCAGAT
GGTCAAGGGGAGTTGACACCGGAGGAGGCAGCTGAGCAGGCAGCCGTAATGAGGCAACAGATTCACCTATTTTGGGGCAA
TATGCTTTTTGAGCGCTCTCAAGTGGAATTCAAGCTTGTTGTCGGTGATTGGAAGAAGAATCTCGATGCTTCTGTTGAAA
GGTTTAAGTTGGCTGGAGCTTCAGAATCAGATATCTCCACGGTGCTGAAGAACCATTTTTCCAAT---GCAGTCTCTGAG
TGCGAAGAGAAGAAAGTTATGCCTTCAGGCACAGGAAGTTCCCAAACAAGTGACGGCATTGATGATGAATCTGTGGTTGA
AAGCTAAGTTCTTGTTGTTCAAGCTAGATGAAATCGATGCTTGTCGTATTCTATTGTTTGATAGGCATTATTTGTTCTTG
ACAACTTCTTCATGGTTTGGTATCATGACCGCCAATTTAGATATTATTAGCATACA-TAGATTTTTTGATTTGCAGAACT
AGCGTGGACTTCACGTGCTTCAAACATCTTGATCTGTTTCATGTGTCTTGATTTTTATGATAATTTTTTGGGCCGGTTTC
AAGGTATATGATGGAGATTTTTGAAGTAGTTAACCACTTTGAAGACCGTTCGCTAAACGTTCTCTGCAATGATATCGCAG
AATGTAGACTAAGCTTTATCCATTATTTTTTGCAAGCAGTGATACAGATTGTAGCCTCTTACAGAAATGTAGGGAAAGGC
TGCGTACAATAGACCCAAAGTGGTCGGACCCTTTCTCAGACCCTGCACAAGCGGGAGCTACATGCATTGGGGCTGCCTTT
TTTAGTGATACAGATTGTCACACCTGAGATTTACTACTCCCTCCATTCATTATTATAAGACGTTTTGGACAGCTAGCTTT
GAACTGTTTTGGGCACTGTCTGAATTGTCTAGAACGTCTTATAAAAGTGAACAGAGGAAGTAGTAGTTTCTTAGTTATAT
CAACTGCAGCTTTGAGCTGATAATATCTGCGAGGCGCCCGCAAACTGGCCACTCTGTTCGGTTGTGATGCAAGGGATTGT
TAGTTGTCACAGCCCGCTA-------CTACAGCAGTGTGCACTGTGCAGCAGCATTTTGGTGCAAATAAGTTTTGCATAA
---------A-TTTTGCAGATTTATTGACTCCAGAGAACGGGAAATAAACGT-ACTTCCAATTCAGTTCAATTTCATATC
AGAGCTATAACATAATATTTCCTATGACTAAGAGCATGTTGGGATCTGCTCCACTCCGCAACTCCGCTGTCGTGCAACTT
TACCGGTTGGCTGATCCAGGATGTCCTTTCCTGCGGATAGCAACTTCCTTCCCTGACCATGTGGAG
>chr5D_1
CCCCAGCGCACTTGTCCGCCAGTTCGGAGAGTTGCACCGTAGTGCGCACATCATGGACCACCATCTTCTCGCACATCTTG
AGGTCTGTGACGCCGTTGCGGAAGGCCGCGACAACCTCCGCATCGTGGATGCGGGGGATTTTGTTGCGAACTTGGCTAGA
ACGTTGGATGAACCTGCGTAGCGTCTCACCCTCCTTTTGTATCGGATGGCGTTTAAATTGGCGATTGTGGACGGCCGGTC
ACAAGTTCCCTTAAAATTGGCGATGAACCGCTTGCACAGCTCGTCCCAAGTTTCGATGGAATTG----------------
----TGGACGGGCCGAATCCTTAAGGGTCGTAGGAAACCAGATAACCATGGCGTCAGAGTGGCCATGAGCCGCCTGGATT
GCTGTGGTATAGATTTGGAGGAACTCGACGGGGTCGGTCGAGCCATCGTACCGCGACGACAGATCTGGCTTGAACCGCGG
AGGCGAGACCACCTCACGAAGTTCAGGGGTGAACGCCTGGCACCCCACGCCTATCGGCACAGCGTGGGCGACCGGGGTGC
CCGGCGCAGGGCGCCCCGCCTCCGCCTTCTCTTGGACGAATCTGTCCTGCCGCTCTCACGAGCGCTCTTGGACAAAAGGT
TACCACGACGTATGTCTTTCATGTAACCAAACAACATGCTTGCAATCATATGGCGTGCTGATGGCTTGCCTCTAATGCAC
A----ATAGAATTTTGTGGGCAACCAAACTAAATACAGAACATTTTTTTTTTCTGTATTGCTCTTTTTTAGCAAATTCTT
TTCCTGTATT-----------GCTGAGTGGAGTCAAAGATGCAACCAAAATCCAGGTAGGAACCTAATAAACGCTCATAC
TATAGCAGAGTTGGACTAGGCCCAACGTTCTAGACCCCTCCGTCTCGTTAGGGTTCACTTCCTGCAAGGCTCTGCTCTTC
ATTCCACTCTCGGTTTCCGCCTCCCCCTCCCCGACTTATCCCCATGGGCAAGTCCGGCGCCAAAAAGAAGAAGCCCTCCC
CTT---------CCGC------CGCCGCCACCACAACCGCCGCCAAATCGCCGCCAGCCGCAGCAGAGCAGAAGGCCCCG
CCGCCCGCGCCCCCCGTAGCGAACGGGGCGGCGCAGCACCAGGCCCCGGCGGACCCCGGCGTGCTCCTGCGCCGTGCGCA
CGAGCTCAAGGAGGAGGGCAACCGCCTGTTCCAGTCGCGCGACTACGCCGGGGCGCTGCGGCAGTACGAGCTCGCCCTCC
ACCTTGCCCCGCGTGGCCATCCCGACCGCGCCGTCTTCCACAGCAACCGCGCCGCCTGCCTCCTGCAGCTCCGCCCCGTC
GACCACAAGGCCGTCGCGGAGGAGTGCTCCCTCGCGCTCCAGGCCGAGCCGCGCTTCCCGCGGGCCCTTCTCCGCCGGGC
CCGCGCGCTTGAGGCGCTCGGCCGCTACGAGCTCGCACTCGCCGACACCCTCGCGCTCCTCGCCCTCGACCCCAACCACC
GCGACGCTATCGACCTCTCCCACCGCCTTCGCTCCCGCATCTCCTCCTCCTCCTCCTCCTCA---GCCTCCGCCGCCCCC
ACCCACGAACCCACCAGCCGCCCTTCTCCCGCCGCCCTCGGTGCCTCGGCCGTTGTGGCCGGCCTTGGCCCATCCCTCCC
TTCCCGCCCCTTCCCCAAGAAACAATCGCCTCCGTCGCCTCCTCCTCCGCTGCAGCAACCAGGTCCTGCAATGACTAAAT
TTAATTCTTCTCCAGCGCCCAAGTTGGTGCCTTTCTCCAACTCTCCGTCATCTTCTGCCAAGGCTTCAACTGCTGATATT
TCTCAGAAGACTGTGCCAGCACTGTCAGTGCCCTCAACCCAACCAGTGACGGAGACATCGCTCATTAACAGGAAGGTTGT
GACGAGATGGAGGCCTCTCAAGCTGGTGTATGGCCATGACATTAGGCTTGGGGAGATGCCTGAAAAATGCAGCTTCCAGA
CCCTCCGGGAAGTTGTGGCGAAGCGCTTCCCATCATCCAAAGCTGTGTTGATGAAGTATAAGGATGCCGATGGTGATCTA
GTTACCATCACTTGCACATCAGAACTCCGATTGGCCGAGGCTTGTGGTGTTGGCACCGATGCAATGGAAGGTGATACTAA
GCTCCCCATGTTGAGGCTGCACATTGTTGAAGTAAGTCCAGAGCAGGAGCCTCCGCTGCCAACAGAAGAGCAGAAGCTGG
AGGAGGAGGAGTTGTTGATCACCGGTGAGGATAGCTCTTCACATACTTCTGCAGAGGTAGCTAATGCTGAGATGACAAAG
CCAGATCTGGAGAATGGAGTTGCTGAACAGAGCACTCTGACAGGAAAGAAAGATTGTGGCCATGCTGAGTGCAAGGAAGC
TGAGATTGACGATTGGTTGCTTCAGTTTGCAGAACTGTTCCGAAACCAGGTTGGGATTGATGCTGATGCGCATCTGGACC
TTCATGAAGTAGGAATGGAGCTGTGCTCCGAAGCACTCGAGGAAACAGTGACCAGCGAGGAGGCCCAATCCCTATTTGAG
ATGGCCGCAGCAAAATTCCAGGAGGTCGCTGCCTTGGCGTTATTTAACTGGGGAAATGTGCACATGTGTGCAGCAAGGAA
GCGCATCCCTCTTGATGAATCTTCTCCGAAGGAAATCATGTCTGCTCAGCTCCGGACAGCTTATGACTGGGTGCTAGAGA
GGTATGCTCTTGCAGGCCACAAGTATGAGGAGGCCCTGAACATCAAGCAAGATTTCTATGAAGGGCTTCTTGCTTTAGGC
CAGCAACACTTTGAGACCGCAAAGCTTCACTGGTCATTTGCATTGGCAGACAAGGTTGACCTGTCTACGTGGGATTCTTC
AGAGACATTCAAGCTTTTTGATAGTGCTGAGGAGAAGATGAGGGCTGCGACAGAGATGTGGGAGAAAGTGGAAGAACAGA
GAATGCTAGAGTTAAAAACACCTGGTGCGACCGAGAAAGATGAGGTGTTGAAGAAACGAAAGAAGCAACACAGTGCAGAT
GGTCAAGGGGAGTTGACACCGGAGGAGGCAGCTGAGCAGACAGCCGTAATGAGGCAACAGATTCACCTATTTTGGGGCAA
TATGCTTTTTGAGCGCTCTCAAGTGGAATTCAAGCTTGTTGTCGGTGATTGGAAGAAGAATCTCGATGCTTCTGTTGAAA
GGTTTAAGTTGGCTGGAGCTTCAGAATCAGATATCTCCACGGTGCTGAAGAATCATTTTTCCAAT---GCAGTCTCTGAG
TGCGAAGAGAAGAAAGTTATGCCTTCAGGCACAGGAAGTTCCCAAACAAGTGATGGCATTGATGATGAGTCTGTGGTTGA
AAGCTAAGTTCTTGTTGTTCAAGCTAGATGAAATCGATGCTTGTCGTATTCTATTGTTTGATAGGCATTATTTGTTCTTG
ATAACTTCTTCATGGTTTGGTATCATGACCGCCAATTTAGATATTATTAGCATA--CTAGATTTTTTGATTTGCAGAACT
AGCGTGTACTCCACATGCTTCAAACATCTTGATCTGTTTCACGTGTCTTAATTTTTATGATAATCTTTTGGGCCGGTTTC
AAGGTATATGATGGAGACTTTTGAAGTAGTTAACCACTTTCAAGACCGCTCGCTAAACGTTCTCTGCAATGATATCGCAG
AATGTAGACTAAGCTTTATCCATTATTTTTTGCAAAGC------------------------------------------
--------------------------------------------------------------------------------
---AGTGATACAGATTGTCACACCCGAGATTTACGT--------------------------------------------
--------------------------------------------------------------GTAGTTTCTTAGCTATAT
CAAAAGCAGCTTTGAGCTGCTAGTATGTGCCAGGCGCTCGCAAACTGGCCACTCTGTTCGGTTGTGATGCAAAGGATTGT
TAGTTGTCACAGCCCGCTAAAACCTGCTACAGCAGTGTGCACTGTGCAGCAGCATTTTGGTGCAAATAAATTTTGCATTT
TTTGAACAGA-TTTTGCAGATTTATCGACTCCAGAGAACGGGAAATAAACAGTACT-----TTCAATTCAATTTCATATC
AGAGCTATAACATAAT----------------------------------------------------------------
------------------------------------------------------------------
>chr5B_672
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------ACATGCTTGCAGTTAAATGGTGTGCTGGTGGTTCGACTCTAATGCAC
T----ATAGGATTTTGT-GGCAACCAAACTAAATACAGTAACATATTTTCCTTGCT-------TTTTTTAGCAAAAACTT
TCA--TGTATTGCTGAGTCAGGCTGAGTAGAGTCACAGATCCAACCAAAATCCAGGTAG-AACCTAATAAACGTTCATAC
GGTAGCAGAGTTGGACTAGGCCCAACGTTCTAGACCCCTCCGTCTCGTTAGGGTTCACTTC---------------CTTC
ATTCCACTCTCGGTTTCCGCCTCCCCCTCCCTGACTTATCCCCATGGGCAAGTCCGGCGCCAAAAAGAAGAAGCCCTCCC
CTTCCGCCGCCGCCGCCGCCGCCACCACCACCACAACCGCCGCCAAATCGCCGCCAGCCGCAGCAGAGCAGAAGGCCCCG
CCGCCCGCGCCCCCCGTAGCGAACGGGGCGGCGCAGCACCAGGCCCAGGCGGACCCCGGCGTGCTCCTGCGCCGCGCGCA
CGAGCTCAAGGAGGAGGGCAACCGCCTGTTCCAGTCGCGCGACTACGCCGGCGCGCTGCGGCAGTACGAGCTCGCCCTCC
GCCTTGCCCCGCGTGGCCATCCCGACCGCGCCGTCTTCCACAGCAACCGCGCCGCCTGCCTCCTGCAGCTCCGCCCCGTC
GACCACAAGGCCGTCGCGGAGGAGTGCTCCCTCGCGCTCCAGGCCGAGCCGCGCTTCCCGCGAGCCCTTCTCCGCCGGGC
CCGCGCGCTTGAGGCGCTCGGCCGCCACGAGCTCGCACTCGCCGACACCCTCGCGCTCCTCGCCCTCGACCCCAACCACC
GCGACGCTATCGACCTCTCACACCGCCTCCGCTCCCGCATCTCCTCGTCCTCCTCCTC------GGCCTCCGCCGTCTCC
ACCCACGAACCCACCAGCCGCCCTTCCCCCGCCGCCCTCGGTGCCTCGGCCGTTGTGGCCGGCCTTGGCCCATCCCTCCC
TTCCCGCCCCTTCCCGAAGAAACAATCGCCTCCGTCGCCTCCTCCGCAGCAGCAGCAACCAGGTCCTGCGATGACTAAAT
TTAATTCCTCGCCAGCGCCCAAGCTGGTGCCTTTCTCCAACTCCCCGTCATCTTCTGCCAAGGCTTCAACTGCTGATATT
TCTCAGAAGACTGTGCCAGCACTGTCAGTGCCCTCAACCCAACCAGTGACGGAGACATCGCTCATTAACAGGAAGGTTGT
GACGAGATGGAGGCCTCTCAAGCTGGTGTATGGCCATGACATTAGGCTTGGGGAGATGCCTGAAAAATGCAGCTTCCAGA
CGCTCCGGGAAGTTGTGGCGAAGCGCTTCCCATCATCCAAGGCTGTGTTGATGAAGTATAAGGATGCTGATGGTGATCTA
GTTACCATCACTTGCACATCAGAACTACGATTGGCTGAGGCTTGTGGTGTTGGCACCGATGCAATGGAAGGTGATACTAA
GCTCCCCATGCTGAGGCTGCACATTGTTGAAGTAAGTCCAGAGCAGGAGCCTCCACTGCCAACAGAAGAGCAGAAGCTGG
AGGAGGAGGAGTTGTTGATCACCGGTGAGGATAGCTCTTCACATATTTCTGCAGAGGTAGCTAATGCTGAGGTGACAAAG
CCAGGTCCGGAGAACGGAGTTGCTGAACAGAGCACTCTGGCAGGGAAGAAAGATTGTGGCCATGCTGAGTGCAAGGAAGC
TGAGATTGACGATTGGTTGCTTCAGTTTGCAGAACTGTTCCGGAACCAGGTTGGGATCGATGCTGATGCACATCTGGACC
TTCATGAACTAGGAATGGAGCTGTGCTCTGAAGCACTTGAGGAAACTGTGACCAGCGAGGAGGCCCAATCCCTATTTGAG
ATGGCTGCAGCAAAATTCCAGGAGGTCGCTGCCTTGGCGTTATTTAACTGGGGAAATGTGCACATGTGTGCAGCAAGGAA
GCGCATCCCTCTTGATGAATCTTCTCCAAAGGAAATCATGTCTGCTCAGCTCCGGACAGCTTATGACTGGGTGCTAGAGA
GGTATGCTCTTGCAGGCCACAAGTATGAGGAGGCCCTGAACATCAAGCAAGATTTCTATGAAGGGCTTCTTGCTTTAGGC
CAGCAACACTTTGAGACCGCAAAGCTGCACTGGTCATTTGCGTTGGCAGACAAGGTTGACCTATCTACCTGGGATTCTTC
AGAGACATTCAAGCTTTTTGATAGTGCTGAGGAGAAGATGAGGGCTGCAACAGAGATGTGGGAGAAAGTGGAAGAACAGA
GAATGCTAGAGTTAAAAACACCTGGTGCGACCGAGAAGGATGAGGTGTTGAAGAAAAGAAAGAAACAACACAGTGCAGAT
GGTCAAGGGGAGTTGACACCCGAGGAGGCAGCTGAGCAGGCAGCCGTGATGAGGCAACAGATTCACCTATTTTGGGGCAA
TATGCTTTTTGAGCGCTCTCAAGTGGAATTCAAACTTGTTGTCGGTGATTGGAAGAAGAATCTTGATGCTTCTGTTGAAA
GGTTTAAGTTGGCTGGAGCTTCAGAATCAGATATCTCCATGGTGCTGAAGAATCATTTTTCCAATGCAGCAGTCTCTGAG
TGCGAAGAGAAGAAAGATATGCCTTCAGCCACAGGAAGTTCCCAAACAAGTGACGGCATTGATGATGAATCTGTGGTTGA
AAGCTAAGTTCTTGTTGTTCAAGCTAGATGAAATCGGTGCTTGTCGTATTCTATTGTTTGATAGGCATTATTTGTTCTTG
ATAACTTCTTCATGGTTTGGTATCATGACCACCAATTTAGATATTATTAGCATATACTAGATTTTTTGATTTGCAGAACT
AGCGTGGACTTCACATGCTTCAAACATCTTGATCTGTTTCATGTGTCTTCATTTTTATGATATTTTTTTGGGCTGGTTTC
AAGGTATATGATGGAGATTTTTGAAGTAGTTAACCACTTAAAAGACCGTCCGCTAAATGTTCTCTGCAATGATAACGCAG
AATGTAGACTAAGCTTTGTCCATTATTTTTTGCAAAGC------------------------------------------
--------------------------------------------------------------------------------
---AGTGATACAGATTGTCACACCTGAGATTTGCGT--------------------------------------------
--------------------------------------------------------------GTAGTTTCTTAGTTATAT
CAAGCGCAGCTTTGAGCTGATAGTATCTGCCAGGCGCCCGCAAACTGGTCACTCTGTTTGGTTGTGATGCAAGGGATTGT
TAGTTGTCACATCCCGCTAAAAACCGCTACAGCAGTGTGCACTGTACATCAGCATTTTGGTGCAAATAAATTTTGCATTT
TTTTGAATAATTTTTGCAGATTTATCGACTCCAGAAAACTGGAAATAAACAGCACTTTCAATTCAGTTCAATTTCATACC
ATAGCTATAACATAGTTTTTCCTATGACTAAGTGC---------------------------------------------
------------------------------------------------------------------
>SNPs
---S-------------S--------S-----------S--------------------S---------SS---------
-----------------------SS-----S------S--------S------------------------------S--
----------------S-----S-------------S-------------------------S-----------------
------------S--------SS---------S------------------------------SSSSSSSSSSSSSSSSS
SSSS--S------------S--------S------------S------------------S------------------S
-------S----S-------S-----S--------S--S--------------------S--------------------
----S--S-----S----S-----S-----------S----S------S----------S----S-----SS--------
--S-------------------------------S--S---------------------SS----------------S--
---------------------S-----------------------------S----------------S-----------
SSSSS--------------------------------------S-------S-------------------------SSS
SSS-S----------------------------------------------SSS-------------S--S---------
--------S----------------------------------------------------------------S------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------------------------------------SSS----------------
--------------------------------------------------------------------------------
------S--------S--------------------------------S-------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S-----S------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------------------------------S-------------------------
--------------S----------------------------------S------------------------------
----------------------------------------S---------------------------------------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
---SS-----------------S-------S-------------------------------------------------
---------------------------------------------------------------------S--------SS
-------------------------S------------------------SS-----S----------------------
----------------S---------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_413
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTGGATC
GCTGTGGCATAGT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_1936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------CCTCAAGCTGGTGTATGGCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_709
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATAGCGTGCTGATGGCTTGT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_2695
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------AACAGCTTATGACTGGGTGCT-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_722
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TGGCTTGTCTCTAATGCAC
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTGACCTGTCTACCTGGGAT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_2695
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TCATGTCTGCTCAGCTCCGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_3787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GACCCTTTCTCAGACCCTGC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
