Multiple sequence alignment - TraesCS5A01G160700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G160700 chr5A 100.000 2384 0 0 1 2384 342039343 342036960 0.000000e+00 4403
1 TraesCS5A01G160700 chr5A 95.882 170 7 0 289 458 342044033 342043864 2.330000e-70 276
2 TraesCS5A01G160700 chr5D 88.081 1141 54 30 482 1578 257158670 257157568 0.000000e+00 1279
3 TraesCS5A01G160700 chr1D 90.752 811 54 13 1581 2384 456819834 456820630 0.000000e+00 1062
4 TraesCS5A01G160700 chr1D 88.224 501 33 16 1 480 62610591 62610096 2.060000e-160 575
5 TraesCS5A01G160700 chr1D 89.125 377 32 7 1609 1979 387956368 387956741 6.000000e-126 460
6 TraesCS5A01G160700 chr5B 90.030 662 38 13 751 1387 291489607 291488949 0.000000e+00 832
7 TraesCS5A01G160700 chr5B 86.364 286 18 12 482 763 291497940 291497672 2.320000e-75 292
8 TraesCS5A01G160700 chr5B 90.833 120 8 3 1398 1515 291488547 291488429 8.820000e-35 158
9 TraesCS5A01G160700 chr7A 91.261 595 44 5 1790 2384 646766314 646766900 0.000000e+00 804
10 TraesCS5A01G160700 chr7A 89.922 387 33 5 1596 1979 592911753 592911370 5.920000e-136 494
11 TraesCS5A01G160700 chr7A 87.565 386 40 5 1596 1979 482775637 482776016 7.820000e-120 440
12 TraesCS5A01G160700 chr1B 90.505 495 29 4 1 480 554187748 554187257 2.580000e-179 638
13 TraesCS5A01G160700 chr4A 90.408 490 31 6 1 481 741435052 741434570 4.320000e-177 630
14 TraesCS5A01G160700 chr3A 88.956 498 38 7 1 486 723450549 723450057 1.220000e-167 599
15 TraesCS5A01G160700 chr3A 90.104 192 18 1 289 480 723460925 723460735 5.090000e-62 248
16 TraesCS5A01G160700 chr2D 91.094 393 28 5 1591 1979 625561776 625561387 2.100000e-145 525
17 TraesCS5A01G160700 chr4D 93.694 333 13 4 1 330 341961966 341962293 2.130000e-135 492
18 TraesCS5A01G160700 chr4D 93.750 192 10 1 289 480 341957455 341957644 1.080000e-73 287
19 TraesCS5A01G160700 chr4D 94.194 155 9 0 326 480 341971081 341971235 1.100000e-58 237
20 TraesCS5A01G160700 chr2A 89.717 389 32 6 1595 1979 537256504 537256888 7.660000e-135 490
21 TraesCS5A01G160700 chr2A 88.205 390 40 5 1593 1979 23635545 23635159 6.000000e-126 460
22 TraesCS5A01G160700 chr2A 87.168 226 26 2 4 229 736066591 736066369 1.090000e-63 254
23 TraesCS5A01G160700 chr2A 83.486 218 22 6 275 480 736066225 736066010 8.700000e-45 191
24 TraesCS5A01G160700 chr3D 89.175 388 34 5 1596 1979 554690800 554690417 5.960000e-131 477
25 TraesCS5A01G160700 chr7D 89.628 376 32 5 1595 1966 221837680 221838052 2.770000e-129 472


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G160700 chr5A 342036960 342039343 2383 True 4403.0 4403 100.0000 1 2384 1 chr5A.!!$R1 2383
1 TraesCS5A01G160700 chr5D 257157568 257158670 1102 True 1279.0 1279 88.0810 482 1578 1 chr5D.!!$R1 1096
2 TraesCS5A01G160700 chr1D 456819834 456820630 796 False 1062.0 1062 90.7520 1581 2384 1 chr1D.!!$F2 803
3 TraesCS5A01G160700 chr5B 291488429 291489607 1178 True 495.0 832 90.4315 751 1515 2 chr5B.!!$R2 764
4 TraesCS5A01G160700 chr7A 646766314 646766900 586 False 804.0 804 91.2610 1790 2384 1 chr7A.!!$F2 594
5 TraesCS5A01G160700 chr2A 736066010 736066591 581 True 222.5 254 85.3270 4 480 2 chr2A.!!$R2 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.034186 TGGAAAGCCAGCCCTACATG 60.034 55.0 0.0 0.0 39.92 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2738 0.178975 ATGGTCCGTGGCAGGAAAAA 60.179 50.0 9.09 0.0 42.77 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.712881 GCCGTCGAGCGCAAGTTT 61.713 61.111 11.47 0.00 39.71 2.66
52 53 2.170985 CCGTCGAGCGCAAGTTTG 59.829 61.111 11.47 0.00 39.71 2.93
53 54 2.307309 CCGTCGAGCGCAAGTTTGA 61.307 57.895 11.47 0.00 38.78 2.69
54 55 1.562691 CGTCGAGCGCAAGTTTGAA 59.437 52.632 11.47 0.00 42.94 2.69
55 56 0.449507 CGTCGAGCGCAAGTTTGAAG 60.450 55.000 11.47 0.00 42.94 3.02
56 57 0.582005 GTCGAGCGCAAGTTTGAAGT 59.418 50.000 11.47 0.00 42.94 3.01
57 58 0.859232 TCGAGCGCAAGTTTGAAGTC 59.141 50.000 11.47 0.00 38.09 3.01
58 59 0.449507 CGAGCGCAAGTTTGAAGTCG 60.450 55.000 11.47 1.38 41.68 4.18
59 60 0.859232 GAGCGCAAGTTTGAAGTCGA 59.141 50.000 11.47 0.00 41.68 4.20
60 61 1.461127 GAGCGCAAGTTTGAAGTCGAT 59.539 47.619 11.47 0.00 41.68 3.59
61 62 1.195448 AGCGCAAGTTTGAAGTCGATG 59.805 47.619 11.47 0.00 41.68 3.84
62 63 1.194547 GCGCAAGTTTGAAGTCGATGA 59.805 47.619 0.30 0.00 41.68 2.92
63 64 2.827555 CGCAAGTTTGAAGTCGATGAC 58.172 47.619 0.00 0.00 0.00 3.06
64 65 2.718789 CGCAAGTTTGAAGTCGATGACG 60.719 50.000 0.00 0.00 37.67 4.35
65 66 2.827555 CAAGTTTGAAGTCGATGACGC 58.172 47.619 0.00 0.00 37.67 5.19
66 67 1.429463 AGTTTGAAGTCGATGACGCC 58.571 50.000 0.00 0.00 37.67 5.68
67 68 0.093026 GTTTGAAGTCGATGACGCCG 59.907 55.000 0.00 0.00 37.67 6.46
68 69 1.011968 TTTGAAGTCGATGACGCCGG 61.012 55.000 0.00 0.00 37.67 6.13
69 70 3.255379 GAAGTCGATGACGCCGGC 61.255 66.667 19.07 19.07 37.67 6.13
89 90 3.760035 CGGTGGACGGGAGAGGTG 61.760 72.222 0.00 0.00 39.42 4.00
90 91 3.391382 GGTGGACGGGAGAGGTGG 61.391 72.222 0.00 0.00 0.00 4.61
91 92 3.391382 GTGGACGGGAGAGGTGGG 61.391 72.222 0.00 0.00 0.00 4.61
92 93 4.715130 TGGACGGGAGAGGTGGGG 62.715 72.222 0.00 0.00 0.00 4.96
94 95 4.393778 GACGGGAGAGGTGGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
95 96 4.400251 ACGGGAGAGGTGGGGGAG 62.400 72.222 0.00 0.00 0.00 4.30
97 98 3.695825 GGGAGAGGTGGGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
98 99 2.706071 GGAGAGGTGGGGGAGGAT 59.294 66.667 0.00 0.00 0.00 3.24
99 100 1.004891 GGAGAGGTGGGGGAGGATT 59.995 63.158 0.00 0.00 0.00 3.01
100 101 1.348775 GGAGAGGTGGGGGAGGATTG 61.349 65.000 0.00 0.00 0.00 2.67
101 102 1.308216 AGAGGTGGGGGAGGATTGG 60.308 63.158 0.00 0.00 0.00 3.16
102 103 1.307866 GAGGTGGGGGAGGATTGGA 60.308 63.158 0.00 0.00 0.00 3.53
103 104 1.308216 AGGTGGGGGAGGATTGGAG 60.308 63.158 0.00 0.00 0.00 3.86
104 105 2.386935 GGTGGGGGAGGATTGGAGG 61.387 68.421 0.00 0.00 0.00 4.30
105 106 1.307866 GTGGGGGAGGATTGGAGGA 60.308 63.158 0.00 0.00 0.00 3.71
106 107 1.004758 TGGGGGAGGATTGGAGGAG 59.995 63.158 0.00 0.00 0.00 3.69
107 108 1.772156 GGGGGAGGATTGGAGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
108 109 1.318380 GGGGAGGATTGGAGGAGGA 59.682 63.158 0.00 0.00 0.00 3.71
109 110 0.327576 GGGGAGGATTGGAGGAGGAA 60.328 60.000 0.00 0.00 0.00 3.36
110 111 1.135960 GGGAGGATTGGAGGAGGAAG 58.864 60.000 0.00 0.00 0.00 3.46
111 112 1.135960 GGAGGATTGGAGGAGGAAGG 58.864 60.000 0.00 0.00 0.00 3.46
112 113 0.472044 GAGGATTGGAGGAGGAAGGC 59.528 60.000 0.00 0.00 0.00 4.35
113 114 0.253347 AGGATTGGAGGAGGAAGGCA 60.253 55.000 0.00 0.00 0.00 4.75
114 115 0.182299 GGATTGGAGGAGGAAGGCAG 59.818 60.000 0.00 0.00 0.00 4.85
115 116 0.182299 GATTGGAGGAGGAAGGCAGG 59.818 60.000 0.00 0.00 0.00 4.85
116 117 1.284841 ATTGGAGGAGGAAGGCAGGG 61.285 60.000 0.00 0.00 0.00 4.45
117 118 2.285743 GGAGGAGGAAGGCAGGGT 60.286 66.667 0.00 0.00 0.00 4.34
118 119 2.371259 GGAGGAGGAAGGCAGGGTC 61.371 68.421 0.00 0.00 0.00 4.46
119 120 1.613630 GAGGAGGAAGGCAGGGTCA 60.614 63.158 0.00 0.00 0.00 4.02
120 121 1.151810 AGGAGGAAGGCAGGGTCAA 60.152 57.895 0.00 0.00 0.00 3.18
121 122 1.204113 AGGAGGAAGGCAGGGTCAAG 61.204 60.000 0.00 0.00 0.00 3.02
122 123 1.301293 GAGGAAGGCAGGGTCAAGG 59.699 63.158 0.00 0.00 0.00 3.61
123 124 2.203549 GAGGAAGGCAGGGTCAAGGG 62.204 65.000 0.00 0.00 0.00 3.95
124 125 2.356667 GAAGGCAGGGTCAAGGGG 59.643 66.667 0.00 0.00 0.00 4.79
125 126 3.268032 AAGGCAGGGTCAAGGGGG 61.268 66.667 0.00 0.00 0.00 5.40
126 127 4.617595 AGGCAGGGTCAAGGGGGT 62.618 66.667 0.00 0.00 0.00 4.95
127 128 4.366684 GGCAGGGTCAAGGGGGTG 62.367 72.222 0.00 0.00 0.00 4.61
128 129 4.366684 GCAGGGTCAAGGGGGTGG 62.367 72.222 0.00 0.00 0.00 4.61
129 130 3.661648 CAGGGTCAAGGGGGTGGG 61.662 72.222 0.00 0.00 0.00 4.61
130 131 4.217266 AGGGTCAAGGGGGTGGGT 62.217 66.667 0.00 0.00 0.00 4.51
131 132 3.979497 GGGTCAAGGGGGTGGGTG 61.979 72.222 0.00 0.00 0.00 4.61
132 133 3.979497 GGTCAAGGGGGTGGGTGG 61.979 72.222 0.00 0.00 0.00 4.61
133 134 3.979497 GTCAAGGGGGTGGGTGGG 61.979 72.222 0.00 0.00 0.00 4.61
134 135 4.209620 TCAAGGGGGTGGGTGGGA 62.210 66.667 0.00 0.00 0.00 4.37
135 136 2.946650 CAAGGGGGTGGGTGGGAT 60.947 66.667 0.00 0.00 0.00 3.85
136 137 2.946650 AAGGGGGTGGGTGGGATG 60.947 66.667 0.00 0.00 0.00 3.51
140 141 4.447342 GGGTGGGTGGGATGGCTG 62.447 72.222 0.00 0.00 0.00 4.85
142 143 4.365111 GTGGGTGGGATGGCTGCA 62.365 66.667 0.50 0.00 0.00 4.41
143 144 3.588511 TGGGTGGGATGGCTGCAA 61.589 61.111 0.50 0.00 0.00 4.08
144 145 2.757099 GGGTGGGATGGCTGCAAG 60.757 66.667 0.50 0.00 0.00 4.01
145 146 2.356278 GGTGGGATGGCTGCAAGA 59.644 61.111 0.50 0.00 34.07 3.02
146 147 1.751927 GGTGGGATGGCTGCAAGAG 60.752 63.158 0.50 0.00 34.07 2.85
147 148 1.751927 GTGGGATGGCTGCAAGAGG 60.752 63.158 0.50 0.00 34.07 3.69
148 149 1.924939 TGGGATGGCTGCAAGAGGA 60.925 57.895 0.50 0.00 34.07 3.71
149 150 1.304282 GGGATGGCTGCAAGAGGAA 59.696 57.895 0.50 0.00 34.07 3.36
150 151 0.750911 GGGATGGCTGCAAGAGGAAG 60.751 60.000 0.50 0.00 34.07 3.46
151 152 0.254178 GGATGGCTGCAAGAGGAAGA 59.746 55.000 0.50 0.00 34.07 2.87
152 153 1.377536 GATGGCTGCAAGAGGAAGAC 58.622 55.000 0.50 0.00 34.07 3.01
153 154 0.034670 ATGGCTGCAAGAGGAAGACC 60.035 55.000 0.50 0.00 34.07 3.85
154 155 1.743252 GGCTGCAAGAGGAAGACCG 60.743 63.158 0.50 0.00 41.83 4.79
155 156 2.394563 GCTGCAAGAGGAAGACCGC 61.395 63.158 0.00 0.00 41.83 5.68
156 157 1.743252 CTGCAAGAGGAAGACCGCC 60.743 63.158 0.00 0.00 41.83 6.13
157 158 2.815647 GCAAGAGGAAGACCGCCG 60.816 66.667 0.00 0.00 41.83 6.46
158 159 2.125512 CAAGAGGAAGACCGCCGG 60.126 66.667 0.00 0.00 41.83 6.13
159 160 2.283676 AAGAGGAAGACCGCCGGA 60.284 61.111 11.71 0.00 41.83 5.14
160 161 2.352032 AAGAGGAAGACCGCCGGAG 61.352 63.158 11.71 0.00 41.83 4.63
161 162 4.516195 GAGGAAGACCGCCGGAGC 62.516 72.222 11.71 0.40 41.83 4.70
164 165 4.821589 GAAGACCGCCGGAGCCAG 62.822 72.222 11.71 0.00 34.57 4.85
171 172 3.844090 GCCGGAGCCAGAGGTCTC 61.844 72.222 5.05 0.00 40.49 3.36
172 173 3.522731 CCGGAGCCAGAGGTCTCG 61.523 72.222 0.00 0.00 40.49 4.04
173 174 2.752238 CGGAGCCAGAGGTCTCGT 60.752 66.667 0.00 0.00 40.49 4.18
174 175 2.766400 CGGAGCCAGAGGTCTCGTC 61.766 68.421 0.00 0.00 40.49 4.20
175 176 1.679305 GGAGCCAGAGGTCTCGTCA 60.679 63.158 0.00 0.00 40.49 4.35
176 177 1.662438 GGAGCCAGAGGTCTCGTCAG 61.662 65.000 0.00 0.00 40.49 3.51
177 178 0.678366 GAGCCAGAGGTCTCGTCAGA 60.678 60.000 0.00 0.00 37.53 3.27
178 179 0.251386 AGCCAGAGGTCTCGTCAGAA 60.251 55.000 0.00 0.00 34.09 3.02
179 180 0.603569 GCCAGAGGTCTCGTCAGAAA 59.396 55.000 0.00 0.00 34.09 2.52
180 181 1.670380 GCCAGAGGTCTCGTCAGAAAC 60.670 57.143 0.00 0.00 34.09 2.78
181 182 1.067495 CCAGAGGTCTCGTCAGAAACC 60.067 57.143 0.00 0.00 34.09 3.27
182 183 0.882474 AGAGGTCTCGTCAGAAACCG 59.118 55.000 0.00 0.00 36.87 4.44
183 184 0.109226 GAGGTCTCGTCAGAAACCGG 60.109 60.000 0.00 0.00 36.87 5.28
184 185 0.538977 AGGTCTCGTCAGAAACCGGA 60.539 55.000 9.46 0.00 36.87 5.14
185 186 0.109226 GGTCTCGTCAGAAACCGGAG 60.109 60.000 9.46 0.00 0.00 4.63
186 187 0.733223 GTCTCGTCAGAAACCGGAGC 60.733 60.000 9.46 0.00 0.00 4.70
187 188 1.801913 CTCGTCAGAAACCGGAGCG 60.802 63.158 9.46 1.45 0.00 5.03
188 189 3.479269 CGTCAGAAACCGGAGCGC 61.479 66.667 9.46 0.00 0.00 5.92
189 190 3.479269 GTCAGAAACCGGAGCGCG 61.479 66.667 9.46 0.00 0.00 6.86
190 191 3.986006 TCAGAAACCGGAGCGCGT 61.986 61.111 9.46 0.00 0.00 6.01
191 192 3.777925 CAGAAACCGGAGCGCGTG 61.778 66.667 9.46 0.00 0.00 5.34
206 207 2.747460 GTGGAGCTGGCGCATCAA 60.747 61.111 10.83 0.00 39.10 2.57
207 208 2.747460 TGGAGCTGGCGCATCAAC 60.747 61.111 10.83 0.00 39.10 3.18
208 209 3.869272 GGAGCTGGCGCATCAACG 61.869 66.667 10.83 0.00 39.10 4.10
209 210 3.869272 GAGCTGGCGCATCAACGG 61.869 66.667 10.83 0.00 39.10 4.44
213 214 4.652131 TGGCGCATCAACGGGGTT 62.652 61.111 10.83 0.00 0.00 4.11
214 215 4.114997 GGCGCATCAACGGGGTTG 62.115 66.667 10.83 2.16 43.99 3.77
215 216 4.776647 GCGCATCAACGGGGTTGC 62.777 66.667 0.30 0.00 42.55 4.17
216 217 4.114997 CGCATCAACGGGGTTGCC 62.115 66.667 3.68 0.00 42.55 4.52
217 218 2.988684 GCATCAACGGGGTTGCCA 60.989 61.111 3.68 0.00 42.55 4.92
218 219 2.993471 GCATCAACGGGGTTGCCAG 61.993 63.158 3.68 0.00 42.55 4.85
219 220 1.303236 CATCAACGGGGTTGCCAGA 60.303 57.895 3.68 0.00 42.55 3.86
220 221 1.002134 ATCAACGGGGTTGCCAGAG 60.002 57.895 3.68 0.00 42.55 3.35
221 222 2.484287 ATCAACGGGGTTGCCAGAGG 62.484 60.000 3.68 0.00 42.55 3.69
265 266 4.787735 TCGGAAGAGGAGGAAGGG 57.212 61.111 0.00 0.00 34.84 3.95
266 267 1.001760 TCGGAAGAGGAGGAAGGGG 59.998 63.158 0.00 0.00 34.84 4.79
267 268 1.001760 CGGAAGAGGAGGAAGGGGA 59.998 63.158 0.00 0.00 0.00 4.81
268 269 0.617820 CGGAAGAGGAGGAAGGGGAA 60.618 60.000 0.00 0.00 0.00 3.97
269 270 1.208706 GGAAGAGGAGGAAGGGGAAG 58.791 60.000 0.00 0.00 0.00 3.46
270 271 0.544223 GAAGAGGAGGAAGGGGAAGC 59.456 60.000 0.00 0.00 0.00 3.86
271 272 0.916845 AAGAGGAGGAAGGGGAAGCC 60.917 60.000 0.00 0.00 0.00 4.35
272 273 1.616628 GAGGAGGAAGGGGAAGCCA 60.617 63.158 0.00 0.00 0.00 4.75
273 274 0.990818 GAGGAGGAAGGGGAAGCCAT 60.991 60.000 0.00 0.00 0.00 4.40
274 275 0.346932 AGGAGGAAGGGGAAGCCATA 59.653 55.000 0.00 0.00 0.00 2.74
275 276 0.767998 GGAGGAAGGGGAAGCCATAG 59.232 60.000 0.00 0.00 0.00 2.23
276 277 0.109532 GAGGAAGGGGAAGCCATAGC 59.890 60.000 0.00 0.00 40.32 2.97
290 291 4.820284 GCCATAGCTCTGATTACCAAAC 57.180 45.455 0.00 0.00 35.50 2.93
291 292 4.455606 GCCATAGCTCTGATTACCAAACT 58.544 43.478 0.00 0.00 35.50 2.66
292 293 4.274459 GCCATAGCTCTGATTACCAAACTG 59.726 45.833 0.00 0.00 35.50 3.16
293 294 5.674525 CCATAGCTCTGATTACCAAACTGA 58.325 41.667 0.00 0.00 0.00 3.41
294 295 5.757320 CCATAGCTCTGATTACCAAACTGAG 59.243 44.000 0.00 0.00 34.41 3.35
296 297 2.349886 GCTCTGATTACCAAACTGAGCG 59.650 50.000 10.61 0.00 42.27 5.03
297 298 3.849911 CTCTGATTACCAAACTGAGCGA 58.150 45.455 0.00 0.00 0.00 4.93
298 299 4.437239 CTCTGATTACCAAACTGAGCGAT 58.563 43.478 0.00 0.00 0.00 4.58
299 300 4.433615 TCTGATTACCAAACTGAGCGATC 58.566 43.478 0.00 0.00 0.00 3.69
300 301 4.081697 TCTGATTACCAAACTGAGCGATCA 60.082 41.667 2.19 2.19 0.00 2.92
301 302 4.574892 TGATTACCAAACTGAGCGATCAA 58.425 39.130 4.32 0.00 0.00 2.57
302 303 5.185454 TGATTACCAAACTGAGCGATCAAT 58.815 37.500 4.32 0.00 0.00 2.57
303 304 5.294306 TGATTACCAAACTGAGCGATCAATC 59.706 40.000 4.32 2.77 0.00 2.67
304 305 3.057969 ACCAAACTGAGCGATCAATCA 57.942 42.857 4.32 0.00 0.00 2.57
305 306 2.744202 ACCAAACTGAGCGATCAATCAC 59.256 45.455 4.32 0.00 0.00 3.06
306 307 2.743664 CCAAACTGAGCGATCAATCACA 59.256 45.455 4.32 0.00 0.00 3.58
307 308 3.425359 CCAAACTGAGCGATCAATCACAC 60.425 47.826 4.32 0.00 0.00 3.82
308 309 3.325293 AACTGAGCGATCAATCACACT 57.675 42.857 4.32 0.00 0.00 3.55
309 310 2.886081 ACTGAGCGATCAATCACACTC 58.114 47.619 4.32 0.00 0.00 3.51
310 311 2.495270 ACTGAGCGATCAATCACACTCT 59.505 45.455 4.32 0.00 0.00 3.24
311 312 2.858941 CTGAGCGATCAATCACACTCTG 59.141 50.000 4.32 0.00 0.00 3.35
312 313 2.232208 TGAGCGATCAATCACACTCTGT 59.768 45.455 0.00 0.00 0.00 3.41
315 316 2.738846 GCGATCAATCACACTCTGTGTT 59.261 45.455 0.12 0.00 45.08 3.32
316 317 3.187227 GCGATCAATCACACTCTGTGTTT 59.813 43.478 0.12 0.00 45.08 2.83
317 318 4.667668 GCGATCAATCACACTCTGTGTTTC 60.668 45.833 0.12 0.00 45.08 2.78
318 319 4.143030 CGATCAATCACACTCTGTGTTTCC 60.143 45.833 0.12 0.00 45.08 3.13
319 320 4.149511 TCAATCACACTCTGTGTTTCCA 57.850 40.909 0.12 0.00 45.08 3.53
320 321 4.717877 TCAATCACACTCTGTGTTTCCAT 58.282 39.130 0.12 0.00 45.08 3.41
321 322 5.863965 TCAATCACACTCTGTGTTTCCATA 58.136 37.500 0.12 0.00 45.08 2.74
322 323 6.295249 TCAATCACACTCTGTGTTTCCATAA 58.705 36.000 0.12 0.00 45.08 1.90
323 324 6.204688 TCAATCACACTCTGTGTTTCCATAAC 59.795 38.462 0.12 0.00 45.08 1.89
324 325 5.290493 TCACACTCTGTGTTTCCATAACT 57.710 39.130 0.12 0.00 45.08 2.24
325 326 5.056480 TCACACTCTGTGTTTCCATAACTG 58.944 41.667 0.12 0.00 45.08 3.16
326 327 4.816385 CACACTCTGTGTTTCCATAACTGT 59.184 41.667 0.12 0.00 45.08 3.55
327 328 5.296780 CACACTCTGTGTTTCCATAACTGTT 59.703 40.000 0.12 0.00 45.08 3.16
328 329 5.885912 ACACTCTGTGTTTCCATAACTGTTT 59.114 36.000 0.00 0.00 45.08 2.83
329 330 7.011950 CACACTCTGTGTTTCCATAACTGTTTA 59.988 37.037 0.00 0.00 45.08 2.01
330 331 7.012044 ACACTCTGTGTTTCCATAACTGTTTAC 59.988 37.037 0.00 0.00 45.08 2.01
331 332 7.011950 CACTCTGTGTTTCCATAACTGTTTACA 59.988 37.037 0.00 0.00 0.00 2.41
332 333 7.012044 ACTCTGTGTTTCCATAACTGTTTACAC 59.988 37.037 0.00 0.00 36.19 2.90
333 334 6.018588 TCTGTGTTTCCATAACTGTTTACACG 60.019 38.462 0.00 0.00 37.91 4.49
334 335 5.585445 TGTGTTTCCATAACTGTTTACACGT 59.415 36.000 0.00 0.00 37.91 4.49
335 336 6.760298 TGTGTTTCCATAACTGTTTACACGTA 59.240 34.615 0.00 0.00 37.91 3.57
336 337 7.065283 GTGTTTCCATAACTGTTTACACGTAC 58.935 38.462 0.00 0.00 0.00 3.67
337 338 6.760298 TGTTTCCATAACTGTTTACACGTACA 59.240 34.615 0.00 0.00 0.00 2.90
338 339 7.441760 TGTTTCCATAACTGTTTACACGTACAT 59.558 33.333 0.00 0.00 0.00 2.29
339 340 8.924691 GTTTCCATAACTGTTTACACGTACATA 58.075 33.333 0.00 0.00 0.00 2.29
340 341 9.656040 TTTCCATAACTGTTTACACGTACATAT 57.344 29.630 0.00 0.00 0.00 1.78
341 342 8.637281 TCCATAACTGTTTACACGTACATATG 57.363 34.615 0.00 0.00 0.00 1.78
342 343 7.707464 TCCATAACTGTTTACACGTACATATGG 59.293 37.037 16.19 16.19 0.00 2.74
343 344 7.707464 CCATAACTGTTTACACGTACATATGGA 59.293 37.037 16.86 0.00 0.00 3.41
344 345 9.089601 CATAACTGTTTACACGTACATATGGAA 57.910 33.333 7.80 0.00 0.00 3.53
345 346 7.966246 AACTGTTTACACGTACATATGGAAA 57.034 32.000 7.80 0.00 0.00 3.13
346 347 7.591006 ACTGTTTACACGTACATATGGAAAG 57.409 36.000 7.80 0.00 29.18 2.62
347 348 6.091713 ACTGTTTACACGTACATATGGAAAGC 59.908 38.462 7.80 0.00 29.18 3.51
348 349 5.352016 TGTTTACACGTACATATGGAAAGCC 59.648 40.000 7.80 0.00 29.18 4.35
357 358 3.914645 TGGAAAGCCAGCCCTACA 58.085 55.556 0.00 0.00 39.92 2.74
358 359 2.397815 TGGAAAGCCAGCCCTACAT 58.602 52.632 0.00 0.00 39.92 2.29
359 360 0.034186 TGGAAAGCCAGCCCTACATG 60.034 55.000 0.00 0.00 39.92 3.21
360 361 1.387295 GGAAAGCCAGCCCTACATGC 61.387 60.000 0.00 0.00 0.00 4.06
361 362 0.680921 GAAAGCCAGCCCTACATGCA 60.681 55.000 0.00 0.00 0.00 3.96
362 363 0.251742 AAAGCCAGCCCTACATGCAA 60.252 50.000 0.00 0.00 0.00 4.08
363 364 0.682209 AAGCCAGCCCTACATGCAAG 60.682 55.000 0.00 0.00 0.00 4.01
364 365 2.123428 GCCAGCCCTACATGCAAGG 61.123 63.158 7.58 7.58 0.00 3.61
365 366 2.123428 CCAGCCCTACATGCAAGGC 61.123 63.158 11.52 11.52 46.13 4.35
367 368 3.200522 GCCCTACATGCAAGGCAC 58.799 61.111 13.93 3.66 43.04 5.01
368 369 2.764314 GCCCTACATGCAAGGCACG 61.764 63.158 13.93 1.54 43.04 5.34
369 370 1.377202 CCCTACATGCAAGGCACGT 60.377 57.895 8.86 0.00 43.04 4.49
370 371 1.369091 CCCTACATGCAAGGCACGTC 61.369 60.000 8.86 0.00 43.04 4.34
371 372 1.369091 CCTACATGCAAGGCACGTCC 61.369 60.000 1.94 0.00 43.04 4.79
372 373 1.369091 CTACATGCAAGGCACGTCCC 61.369 60.000 0.00 0.00 43.04 4.46
373 374 3.803082 CATGCAAGGCACGTCCCG 61.803 66.667 0.00 0.00 43.04 5.14
376 377 4.778143 GCAAGGCACGTCCCGGAT 62.778 66.667 0.73 0.00 34.51 4.18
377 378 2.819595 CAAGGCACGTCCCGGATG 60.820 66.667 0.73 4.98 34.51 3.51
378 379 4.096003 AAGGCACGTCCCGGATGG 62.096 66.667 0.73 1.69 34.51 3.51
387 388 4.609018 CCCGGATGGTGGCGCTAG 62.609 72.222 7.64 0.00 0.00 3.42
388 389 3.536917 CCGGATGGTGGCGCTAGA 61.537 66.667 7.64 0.00 0.00 2.43
389 390 2.737180 CGGATGGTGGCGCTAGAT 59.263 61.111 7.64 0.00 0.00 1.98
390 391 1.069765 CGGATGGTGGCGCTAGATT 59.930 57.895 7.64 0.00 0.00 2.40
391 392 0.317160 CGGATGGTGGCGCTAGATTA 59.683 55.000 7.64 0.00 0.00 1.75
392 393 1.670087 CGGATGGTGGCGCTAGATTAG 60.670 57.143 7.64 0.00 0.00 1.73
393 394 1.338200 GGATGGTGGCGCTAGATTAGG 60.338 57.143 7.64 0.00 0.00 2.69
394 395 1.344763 GATGGTGGCGCTAGATTAGGT 59.655 52.381 7.64 0.00 0.00 3.08
395 396 0.750850 TGGTGGCGCTAGATTAGGTC 59.249 55.000 7.64 0.00 0.00 3.85
396 397 1.041437 GGTGGCGCTAGATTAGGTCT 58.959 55.000 7.64 0.00 41.11 3.85
397 398 2.236766 GGTGGCGCTAGATTAGGTCTA 58.763 52.381 7.64 0.00 38.42 2.59
398 399 2.826725 GGTGGCGCTAGATTAGGTCTAT 59.173 50.000 7.64 0.00 38.71 1.98
399 400 3.119424 GGTGGCGCTAGATTAGGTCTATC 60.119 52.174 7.64 0.00 38.71 2.08
400 401 3.090037 TGGCGCTAGATTAGGTCTATCC 58.910 50.000 7.64 0.00 38.71 2.59
401 402 2.427812 GGCGCTAGATTAGGTCTATCCC 59.572 54.545 7.64 0.00 38.71 3.85
402 403 3.358118 GCGCTAGATTAGGTCTATCCCT 58.642 50.000 0.00 0.00 38.71 4.20
403 404 4.525024 GCGCTAGATTAGGTCTATCCCTA 58.475 47.826 0.00 0.00 38.71 3.53
413 414 7.477345 TTAGGTCTATCCCTAAAGACTAGGT 57.523 40.000 0.00 0.00 42.68 3.08
414 415 5.955944 AGGTCTATCCCTAAAGACTAGGTC 58.044 45.833 0.00 0.00 41.53 3.85
415 416 5.677741 AGGTCTATCCCTAAAGACTAGGTCT 59.322 44.000 0.00 0.00 41.53 3.85
416 417 6.856140 AGGTCTATCCCTAAAGACTAGGTCTA 59.144 42.308 0.41 0.00 41.53 2.59
417 418 6.942005 GGTCTATCCCTAAAGACTAGGTCTAC 59.058 46.154 0.41 0.00 42.59 2.59
418 419 6.942005 GTCTATCCCTAAAGACTAGGTCTACC 59.058 46.154 0.41 0.00 42.59 3.18
419 420 7.202214 GTCTATCCCTAAAGACTAGGTCTACCT 60.202 44.444 6.91 6.91 42.59 3.08
420 421 5.810456 TCCCTAAAGACTAGGTCTACCTT 57.190 43.478 7.04 0.00 46.09 3.50
421 422 5.516984 TCCCTAAAGACTAGGTCTACCTTG 58.483 45.833 7.04 8.02 46.09 3.61
431 432 6.585695 CTAGGTCTACCTTGTTACAACAGA 57.414 41.667 7.04 0.00 46.09 3.41
432 433 5.881923 AGGTCTACCTTGTTACAACAGAA 57.118 39.130 0.00 0.00 46.09 3.02
433 434 6.243216 AGGTCTACCTTGTTACAACAGAAA 57.757 37.500 0.00 0.00 46.09 2.52
434 435 6.289064 AGGTCTACCTTGTTACAACAGAAAG 58.711 40.000 0.00 0.00 46.09 2.62
435 436 6.099269 AGGTCTACCTTGTTACAACAGAAAGA 59.901 38.462 0.00 0.00 46.09 2.52
436 437 6.764560 GGTCTACCTTGTTACAACAGAAAGAA 59.235 38.462 0.00 0.00 40.50 2.52
437 438 7.281549 GGTCTACCTTGTTACAACAGAAAGAAA 59.718 37.037 0.00 0.00 40.50 2.52
438 439 8.121086 GTCTACCTTGTTACAACAGAAAGAAAC 58.879 37.037 0.00 0.00 40.50 2.78
439 440 6.827586 ACCTTGTTACAACAGAAAGAAACA 57.172 33.333 0.00 0.00 40.50 2.83
440 441 7.404671 ACCTTGTTACAACAGAAAGAAACAT 57.595 32.000 0.00 0.00 40.50 2.71
441 442 8.514330 ACCTTGTTACAACAGAAAGAAACATA 57.486 30.769 0.00 0.00 40.50 2.29
442 443 8.403236 ACCTTGTTACAACAGAAAGAAACATAC 58.597 33.333 0.00 0.00 40.50 2.39
443 444 8.402472 CCTTGTTACAACAGAAAGAAACATACA 58.598 33.333 0.00 0.00 40.50 2.29
444 445 9.781834 CTTGTTACAACAGAAAGAAACATACAA 57.218 29.630 0.00 0.00 40.50 2.41
445 446 9.562583 TTGTTACAACAGAAAGAAACATACAAC 57.437 29.630 0.00 0.00 40.50 3.32
446 447 8.731605 TGTTACAACAGAAAGAAACATACAACA 58.268 29.630 0.00 0.00 34.30 3.33
447 448 9.562583 GTTACAACAGAAAGAAACATACAACAA 57.437 29.630 0.00 0.00 0.00 2.83
448 449 9.562583 TTACAACAGAAAGAAACATACAACAAC 57.437 29.630 0.00 0.00 0.00 3.32
449 450 7.033185 ACAACAGAAAGAAACATACAACAACC 58.967 34.615 0.00 0.00 0.00 3.77
450 451 6.144078 ACAGAAAGAAACATACAACAACCC 57.856 37.500 0.00 0.00 0.00 4.11
451 452 5.654650 ACAGAAAGAAACATACAACAACCCA 59.345 36.000 0.00 0.00 0.00 4.51
452 453 6.153680 ACAGAAAGAAACATACAACAACCCAA 59.846 34.615 0.00 0.00 0.00 4.12
453 454 6.475402 CAGAAAGAAACATACAACAACCCAAC 59.525 38.462 0.00 0.00 0.00 3.77
454 455 4.561735 AGAAACATACAACAACCCAACG 57.438 40.909 0.00 0.00 0.00 4.10
455 456 3.949113 AGAAACATACAACAACCCAACGT 59.051 39.130 0.00 0.00 0.00 3.99
456 457 4.399934 AGAAACATACAACAACCCAACGTT 59.600 37.500 0.00 0.00 33.90 3.99
457 458 5.589452 AGAAACATACAACAACCCAACGTTA 59.411 36.000 0.00 0.00 31.77 3.18
458 459 6.263617 AGAAACATACAACAACCCAACGTTAT 59.736 34.615 0.00 0.00 31.77 1.89
459 460 7.444792 AGAAACATACAACAACCCAACGTTATA 59.555 33.333 0.00 0.00 31.77 0.98
460 461 7.507733 AACATACAACAACCCAACGTTATAA 57.492 32.000 0.00 0.00 31.77 0.98
461 462 7.690952 ACATACAACAACCCAACGTTATAAT 57.309 32.000 0.00 0.00 31.77 1.28
462 463 7.531716 ACATACAACAACCCAACGTTATAATG 58.468 34.615 0.00 3.02 31.77 1.90
463 464 7.175293 ACATACAACAACCCAACGTTATAATGT 59.825 33.333 0.00 4.42 31.77 2.71
464 465 8.666573 CATACAACAACCCAACGTTATAATGTA 58.333 33.333 10.71 5.33 31.77 2.29
465 466 7.690952 ACAACAACCCAACGTTATAATGTAT 57.309 32.000 10.71 0.00 31.77 2.29
466 467 7.531716 ACAACAACCCAACGTTATAATGTATG 58.468 34.615 10.71 10.61 31.77 2.39
467 468 7.175293 ACAACAACCCAACGTTATAATGTATGT 59.825 33.333 10.71 8.44 31.77 2.29
468 469 7.079182 ACAACCCAACGTTATAATGTATGTG 57.921 36.000 10.71 5.98 31.77 3.21
469 470 6.879993 ACAACCCAACGTTATAATGTATGTGA 59.120 34.615 10.71 0.00 31.77 3.58
470 471 6.913873 ACCCAACGTTATAATGTATGTGAC 57.086 37.500 10.71 0.00 0.00 3.67
471 472 6.408035 ACCCAACGTTATAATGTATGTGACA 58.592 36.000 10.71 0.00 43.97 3.58
472 473 6.537301 ACCCAACGTTATAATGTATGTGACAG 59.463 38.462 10.71 2.29 42.79 3.51
473 474 6.537301 CCCAACGTTATAATGTATGTGACAGT 59.463 38.462 10.71 0.00 42.79 3.55
474 475 7.065324 CCCAACGTTATAATGTATGTGACAGTT 59.935 37.037 10.71 0.00 42.79 3.16
475 476 8.114290 CCAACGTTATAATGTATGTGACAGTTC 58.886 37.037 10.71 0.00 42.79 3.01
476 477 8.652463 CAACGTTATAATGTATGTGACAGTTCA 58.348 33.333 10.71 0.00 42.79 3.18
477 478 8.766000 ACGTTATAATGTATGTGACAGTTCAA 57.234 30.769 8.61 0.00 42.79 2.69
478 479 8.653338 ACGTTATAATGTATGTGACAGTTCAAC 58.347 33.333 8.61 0.00 42.79 3.18
479 480 8.652463 CGTTATAATGTATGTGACAGTTCAACA 58.348 33.333 0.00 0.00 42.79 3.33
492 493 4.648762 ACAGTTCAACAATTTGGACCATGA 59.351 37.500 0.00 0.00 41.73 3.07
497 498 5.363939 TCAACAATTTGGACCATGAAAACC 58.636 37.500 0.00 0.00 33.06 3.27
498 499 5.130145 TCAACAATTTGGACCATGAAAACCT 59.870 36.000 0.00 0.00 33.06 3.50
499 500 5.213891 ACAATTTGGACCATGAAAACCTC 57.786 39.130 0.00 0.00 0.00 3.85
514 515 6.569780 TGAAAACCTCTAAAAGAAAGCAACC 58.430 36.000 0.00 0.00 0.00 3.77
532 533 2.413837 ACCGAGTATGCAGTTCAACAC 58.586 47.619 0.00 0.00 0.00 3.32
533 534 2.037251 ACCGAGTATGCAGTTCAACACT 59.963 45.455 0.00 0.00 35.35 3.55
579 580 5.745514 CGATTCAGAAGATTGATTGCGATT 58.254 37.500 0.00 0.00 0.00 3.34
580 581 6.197276 CGATTCAGAAGATTGATTGCGATTT 58.803 36.000 0.00 0.00 0.00 2.17
581 582 6.690098 CGATTCAGAAGATTGATTGCGATTTT 59.310 34.615 0.00 0.00 0.00 1.82
583 584 5.643664 TCAGAAGATTGATTGCGATTTTGG 58.356 37.500 0.00 0.00 0.00 3.28
584 585 5.415389 TCAGAAGATTGATTGCGATTTTGGA 59.585 36.000 0.00 0.00 0.00 3.53
585 586 6.072008 TCAGAAGATTGATTGCGATTTTGGAA 60.072 34.615 0.00 0.00 0.00 3.53
586 587 6.252869 CAGAAGATTGATTGCGATTTTGGAAG 59.747 38.462 0.00 0.00 0.00 3.46
587 588 5.002464 AGATTGATTGCGATTTTGGAAGG 57.998 39.130 0.00 0.00 0.00 3.46
589 590 1.891811 TGATTGCGATTTTGGAAGGCA 59.108 42.857 0.00 0.00 0.00 4.75
590 591 2.262211 GATTGCGATTTTGGAAGGCAC 58.738 47.619 0.00 0.00 32.64 5.01
592 593 0.597568 TGCGATTTTGGAAGGCACTG 59.402 50.000 0.00 0.00 40.86 3.66
593 594 0.109132 GCGATTTTGGAAGGCACTGG 60.109 55.000 0.00 0.00 40.86 4.00
594 595 0.109132 CGATTTTGGAAGGCACTGGC 60.109 55.000 0.00 0.00 40.86 4.85
595 596 0.968405 GATTTTGGAAGGCACTGGCA 59.032 50.000 5.25 0.00 40.86 4.92
596 597 0.681175 ATTTTGGAAGGCACTGGCAC 59.319 50.000 5.25 0.00 40.86 5.01
597 598 0.685785 TTTTGGAAGGCACTGGCACA 60.686 50.000 5.25 0.00 40.86 4.57
598 599 1.391157 TTTGGAAGGCACTGGCACAC 61.391 55.000 5.25 0.00 40.86 3.82
599 600 2.113986 GGAAGGCACTGGCACACT 59.886 61.111 5.25 0.00 40.86 3.55
600 601 2.263741 GGAAGGCACTGGCACACTG 61.264 63.158 5.25 0.00 40.86 3.66
625 627 9.953565 TGATAATAGTTTGCTTGTAGTTTAGGT 57.046 29.630 0.00 0.00 0.00 3.08
633 635 6.952773 TGCTTGTAGTTTAGGTTGTGAAAT 57.047 33.333 0.00 0.00 0.00 2.17
661 666 9.393249 TCAACGAAATAAAATGTTAGCTTGAAG 57.607 29.630 0.00 0.00 0.00 3.02
732 737 5.583061 TCCAAATAAGTGATCACGCGTAATT 59.417 36.000 19.85 4.25 36.20 1.40
735 740 6.656314 AATAAGTGATCACGCGTAATTTCA 57.344 33.333 19.85 9.96 36.20 2.69
769 774 9.846248 ACTTTCTGTTTATTTTACAGCATCATC 57.154 29.630 0.00 0.00 42.12 2.92
862 875 1.860326 CAAGGCGCAAAAAGAACAAGG 59.140 47.619 10.83 0.00 0.00 3.61
935 952 0.813210 GCGCCTCCTTCATCTCCTTG 60.813 60.000 0.00 0.00 0.00 3.61
936 953 0.539051 CGCCTCCTTCATCTCCTTGT 59.461 55.000 0.00 0.00 0.00 3.16
937 954 1.757118 CGCCTCCTTCATCTCCTTGTA 59.243 52.381 0.00 0.00 0.00 2.41
940 959 3.961408 GCCTCCTTCATCTCCTTGTAGTA 59.039 47.826 0.00 0.00 0.00 1.82
947 966 8.725256 TCCTTCATCTCCTTGTAGTACTAGTAT 58.275 37.037 5.75 0.00 0.00 2.12
1317 1523 4.361971 ATGTGGGCTGCTGCTGCT 62.362 61.111 26.79 7.80 40.48 4.24
1366 1572 1.475280 CCATCATTGTTCTGGTGCTGG 59.525 52.381 0.00 0.00 0.00 4.85
1408 2006 5.909621 ACAGCTAGAGTTTATTCGGTGTA 57.090 39.130 0.00 0.00 0.00 2.90
1541 2163 4.796830 CCGCTGAATTTCTTCATGATGTTG 59.203 41.667 8.33 0.00 40.52 3.33
1551 2173 5.936686 CTTCATGATGTTGTGAAGTGAGT 57.063 39.130 0.00 0.00 43.87 3.41
1585 2207 7.800015 TTTTAAATCGGGCTAAACGAATTTC 57.200 32.000 0.00 0.00 44.20 2.17
1586 2208 4.365899 AAATCGGGCTAAACGAATTTCC 57.634 40.909 0.00 0.00 44.20 3.13
1587 2209 2.476126 TCGGGCTAAACGAATTTCCA 57.524 45.000 0.00 0.00 37.42 3.53
1588 2210 2.993937 TCGGGCTAAACGAATTTCCAT 58.006 42.857 0.00 0.00 37.42 3.41
1589 2211 3.349022 TCGGGCTAAACGAATTTCCATT 58.651 40.909 0.00 0.00 37.42 3.16
1590 2212 4.515361 TCGGGCTAAACGAATTTCCATTA 58.485 39.130 0.00 0.00 37.42 1.90
1591 2213 5.127491 TCGGGCTAAACGAATTTCCATTAT 58.873 37.500 0.00 0.00 37.42 1.28
1631 2253 0.888619 CTCACTTGGTAGTCTCCGCA 59.111 55.000 0.00 0.00 30.26 5.69
1654 2276 4.948004 AGTTAATTTTCGTCCCATCTTCCC 59.052 41.667 0.00 0.00 0.00 3.97
1694 2320 2.046285 CACCTCCCAATTCCCGCAC 61.046 63.158 0.00 0.00 0.00 5.34
1704 2330 1.120530 ATTCCCGCACTAACGATCCT 58.879 50.000 0.00 0.00 34.06 3.24
1711 2337 2.308690 GCACTAACGATCCTACCTCCT 58.691 52.381 0.00 0.00 0.00 3.69
1723 2349 2.363683 CTACCTCCTAGTTTCGTCGGT 58.636 52.381 0.00 0.00 0.00 4.69
1766 2392 4.052518 CCCCCTTCCACTGGCCTG 62.053 72.222 8.29 8.29 0.00 4.85
1774 2400 1.903404 CCACTGGCCTGACAAACCC 60.903 63.158 17.64 0.00 0.00 4.11
1778 2404 1.795170 CTGGCCTGACAAACCCAACG 61.795 60.000 3.32 0.00 0.00 4.10
1829 2455 8.472413 ACATATGGTGATTGATTTCTTCTTTGG 58.528 33.333 7.80 0.00 0.00 3.28
1835 2461 7.039714 GGTGATTGATTTCTTCTTTGGTAACCT 60.040 37.037 0.00 0.00 0.00 3.50
1844 2470 7.288810 TCTTCTTTGGTAACCTAACTAACGA 57.711 36.000 0.00 0.00 0.00 3.85
1902 2654 8.169977 ACATACAAGACAACAATCAATTCACT 57.830 30.769 0.00 0.00 0.00 3.41
1903 2655 8.632679 ACATACAAGACAACAATCAATTCACTT 58.367 29.630 0.00 0.00 0.00 3.16
1911 2663 9.121517 GACAACAATCAATTCACTTTATCACAG 57.878 33.333 0.00 0.00 0.00 3.66
1926 2678 8.997323 ACTTTATCACAGTCAGATTCTTCTTTG 58.003 33.333 0.00 0.00 0.00 2.77
1950 2702 2.301870 ACCCAGCTTAACTCACGAATGA 59.698 45.455 0.00 0.00 0.00 2.57
1970 2722 9.013490 CGAATGATAATCAATCTCCAAACAAAC 57.987 33.333 0.00 0.00 35.45 2.93
1986 2738 6.754675 CCAAACAAACGAAACAATAAGGTTCT 59.245 34.615 0.00 0.00 41.94 3.01
2029 2781 3.023949 GCCTGCCTGGTCATCGTCT 62.024 63.158 0.00 0.00 38.35 4.18
2032 2784 0.463204 CTGCCTGGTCATCGTCTGAT 59.537 55.000 0.00 0.00 35.97 2.90
2039 2791 1.560923 GTCATCGTCTGATTCCCACG 58.439 55.000 0.00 0.00 35.97 4.94
2137 2889 2.379907 TGCCAAATCTCTTTCCTTCCCT 59.620 45.455 0.00 0.00 0.00 4.20
2169 2921 0.035056 AGAAGGGCAATCTCCAACCG 60.035 55.000 0.00 0.00 0.00 4.44
2210 2962 4.845580 CCGGGCGCTTCTGCTCAT 62.846 66.667 7.64 0.00 33.96 2.90
2273 3025 2.650116 GCCCTCGCCTGACTTGAGA 61.650 63.158 0.00 0.00 31.31 3.27
2318 3070 2.046023 CCCTCAAGCATCACGGCA 60.046 61.111 0.00 0.00 35.83 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.345808 GCAACTTCACGCGCTGGA 61.346 61.111 5.73 0.00 0.00 3.86
47 48 1.429463 GGCGTCATCGACTTCAAACT 58.571 50.000 0.00 0.00 42.52 2.66
48 49 0.093026 CGGCGTCATCGACTTCAAAC 59.907 55.000 0.00 0.00 43.80 2.93
49 50 1.011968 CCGGCGTCATCGACTTCAAA 61.012 55.000 6.01 0.00 43.80 2.69
50 51 1.445410 CCGGCGTCATCGACTTCAA 60.445 57.895 6.01 0.00 43.80 2.69
51 52 2.180769 CCGGCGTCATCGACTTCA 59.819 61.111 6.01 0.00 43.80 3.02
52 53 3.255379 GCCGGCGTCATCGACTTC 61.255 66.667 12.58 0.00 43.80 3.01
69 70 3.812019 CTCTCCCGTCCACCGTCG 61.812 72.222 0.00 0.00 33.66 5.12
70 71 3.450115 CCTCTCCCGTCCACCGTC 61.450 72.222 0.00 0.00 33.66 4.79
71 72 4.296729 ACCTCTCCCGTCCACCGT 62.297 66.667 0.00 0.00 33.66 4.83
72 73 3.760035 CACCTCTCCCGTCCACCG 61.760 72.222 0.00 0.00 0.00 4.94
73 74 3.391382 CCACCTCTCCCGTCCACC 61.391 72.222 0.00 0.00 0.00 4.61
74 75 3.391382 CCCACCTCTCCCGTCCAC 61.391 72.222 0.00 0.00 0.00 4.02
75 76 4.715130 CCCCACCTCTCCCGTCCA 62.715 72.222 0.00 0.00 0.00 4.02
77 78 4.393778 TCCCCCACCTCTCCCGTC 62.394 72.222 0.00 0.00 0.00 4.79
78 79 4.400251 CTCCCCCACCTCTCCCGT 62.400 72.222 0.00 0.00 0.00 5.28
80 81 2.569373 AATCCTCCCCCACCTCTCCC 62.569 65.000 0.00 0.00 0.00 4.30
81 82 1.004891 AATCCTCCCCCACCTCTCC 59.995 63.158 0.00 0.00 0.00 3.71
82 83 1.348775 CCAATCCTCCCCCACCTCTC 61.349 65.000 0.00 0.00 0.00 3.20
83 84 1.308216 CCAATCCTCCCCCACCTCT 60.308 63.158 0.00 0.00 0.00 3.69
84 85 1.307866 TCCAATCCTCCCCCACCTC 60.308 63.158 0.00 0.00 0.00 3.85
85 86 1.308216 CTCCAATCCTCCCCCACCT 60.308 63.158 0.00 0.00 0.00 4.00
86 87 2.386935 CCTCCAATCCTCCCCCACC 61.387 68.421 0.00 0.00 0.00 4.61
87 88 1.307866 TCCTCCAATCCTCCCCCAC 60.308 63.158 0.00 0.00 0.00 4.61
88 89 1.004758 CTCCTCCAATCCTCCCCCA 59.995 63.158 0.00 0.00 0.00 4.96
89 90 1.772156 CCTCCTCCAATCCTCCCCC 60.772 68.421 0.00 0.00 0.00 5.40
90 91 0.327576 TTCCTCCTCCAATCCTCCCC 60.328 60.000 0.00 0.00 0.00 4.81
91 92 1.135960 CTTCCTCCTCCAATCCTCCC 58.864 60.000 0.00 0.00 0.00 4.30
92 93 1.135960 CCTTCCTCCTCCAATCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
93 94 0.472044 GCCTTCCTCCTCCAATCCTC 59.528 60.000 0.00 0.00 0.00 3.71
94 95 0.253347 TGCCTTCCTCCTCCAATCCT 60.253 55.000 0.00 0.00 0.00 3.24
95 96 0.182299 CTGCCTTCCTCCTCCAATCC 59.818 60.000 0.00 0.00 0.00 3.01
96 97 0.182299 CCTGCCTTCCTCCTCCAATC 59.818 60.000 0.00 0.00 0.00 2.67
97 98 1.284841 CCCTGCCTTCCTCCTCCAAT 61.285 60.000 0.00 0.00 0.00 3.16
98 99 1.925455 CCCTGCCTTCCTCCTCCAA 60.925 63.158 0.00 0.00 0.00 3.53
99 100 2.285668 CCCTGCCTTCCTCCTCCA 60.286 66.667 0.00 0.00 0.00 3.86
100 101 2.285743 ACCCTGCCTTCCTCCTCC 60.286 66.667 0.00 0.00 0.00 4.30
101 102 1.201429 TTGACCCTGCCTTCCTCCTC 61.201 60.000 0.00 0.00 0.00 3.71
102 103 1.151810 TTGACCCTGCCTTCCTCCT 60.152 57.895 0.00 0.00 0.00 3.69
103 104 1.301293 CTTGACCCTGCCTTCCTCC 59.699 63.158 0.00 0.00 0.00 4.30
104 105 1.301293 CCTTGACCCTGCCTTCCTC 59.699 63.158 0.00 0.00 0.00 3.71
105 106 2.234296 CCCTTGACCCTGCCTTCCT 61.234 63.158 0.00 0.00 0.00 3.36
106 107 2.356667 CCCTTGACCCTGCCTTCC 59.643 66.667 0.00 0.00 0.00 3.46
107 108 2.356667 CCCCTTGACCCTGCCTTC 59.643 66.667 0.00 0.00 0.00 3.46
108 109 3.268032 CCCCCTTGACCCTGCCTT 61.268 66.667 0.00 0.00 0.00 4.35
109 110 4.617595 ACCCCCTTGACCCTGCCT 62.618 66.667 0.00 0.00 0.00 4.75
110 111 4.366684 CACCCCCTTGACCCTGCC 62.367 72.222 0.00 0.00 0.00 4.85
111 112 4.366684 CCACCCCCTTGACCCTGC 62.367 72.222 0.00 0.00 0.00 4.85
112 113 3.661648 CCCACCCCCTTGACCCTG 61.662 72.222 0.00 0.00 0.00 4.45
113 114 4.217266 ACCCACCCCCTTGACCCT 62.217 66.667 0.00 0.00 0.00 4.34
114 115 3.979497 CACCCACCCCCTTGACCC 61.979 72.222 0.00 0.00 0.00 4.46
115 116 3.979497 CCACCCACCCCCTTGACC 61.979 72.222 0.00 0.00 0.00 4.02
116 117 3.979497 CCCACCCACCCCCTTGAC 61.979 72.222 0.00 0.00 0.00 3.18
117 118 3.532039 ATCCCACCCACCCCCTTGA 62.532 63.158 0.00 0.00 0.00 3.02
118 119 2.946650 ATCCCACCCACCCCCTTG 60.947 66.667 0.00 0.00 0.00 3.61
119 120 2.946650 CATCCCACCCACCCCCTT 60.947 66.667 0.00 0.00 0.00 3.95
123 124 4.447342 CAGCCATCCCACCCACCC 62.447 72.222 0.00 0.00 0.00 4.61
125 126 3.884704 TTGCAGCCATCCCACCCAC 62.885 63.158 0.00 0.00 0.00 4.61
126 127 3.588511 TTGCAGCCATCCCACCCA 61.589 61.111 0.00 0.00 0.00 4.51
127 128 2.757099 CTTGCAGCCATCCCACCC 60.757 66.667 0.00 0.00 0.00 4.61
128 129 1.751927 CTCTTGCAGCCATCCCACC 60.752 63.158 0.00 0.00 0.00 4.61
129 130 1.751927 CCTCTTGCAGCCATCCCAC 60.752 63.158 0.00 0.00 0.00 4.61
130 131 1.499913 TTCCTCTTGCAGCCATCCCA 61.500 55.000 0.00 0.00 0.00 4.37
131 132 0.750911 CTTCCTCTTGCAGCCATCCC 60.751 60.000 0.00 0.00 0.00 3.85
132 133 0.254178 TCTTCCTCTTGCAGCCATCC 59.746 55.000 0.00 0.00 0.00 3.51
133 134 1.377536 GTCTTCCTCTTGCAGCCATC 58.622 55.000 0.00 0.00 0.00 3.51
134 135 0.034670 GGTCTTCCTCTTGCAGCCAT 60.035 55.000 0.00 0.00 0.00 4.40
135 136 1.376466 GGTCTTCCTCTTGCAGCCA 59.624 57.895 0.00 0.00 0.00 4.75
136 137 1.743252 CGGTCTTCCTCTTGCAGCC 60.743 63.158 0.00 0.00 0.00 4.85
137 138 2.394563 GCGGTCTTCCTCTTGCAGC 61.395 63.158 0.00 0.00 0.00 5.25
138 139 1.743252 GGCGGTCTTCCTCTTGCAG 60.743 63.158 0.00 0.00 0.00 4.41
139 140 2.347490 GGCGGTCTTCCTCTTGCA 59.653 61.111 0.00 0.00 0.00 4.08
140 141 2.815647 CGGCGGTCTTCCTCTTGC 60.816 66.667 0.00 0.00 0.00 4.01
141 142 2.125512 CCGGCGGTCTTCCTCTTG 60.126 66.667 19.97 0.00 0.00 3.02
142 143 2.283676 TCCGGCGGTCTTCCTCTT 60.284 61.111 27.32 0.00 0.00 2.85
143 144 2.756283 CTCCGGCGGTCTTCCTCT 60.756 66.667 27.32 0.00 0.00 3.69
144 145 4.516195 GCTCCGGCGGTCTTCCTC 62.516 72.222 27.32 4.56 0.00 3.71
147 148 4.821589 CTGGCTCCGGCGGTCTTC 62.822 72.222 27.32 14.25 39.81 2.87
154 155 3.844090 GAGACCTCTGGCTCCGGC 61.844 72.222 0.00 0.00 37.82 6.13
155 156 3.522731 CGAGACCTCTGGCTCCGG 61.523 72.222 0.00 0.00 0.00 5.14
156 157 2.752238 ACGAGACCTCTGGCTCCG 60.752 66.667 0.00 0.00 0.00 4.63
157 158 1.662438 CTGACGAGACCTCTGGCTCC 61.662 65.000 0.00 0.00 0.00 4.70
158 159 0.678366 TCTGACGAGACCTCTGGCTC 60.678 60.000 0.00 0.00 0.00 4.70
159 160 0.251386 TTCTGACGAGACCTCTGGCT 60.251 55.000 0.00 0.00 0.00 4.75
160 161 0.603569 TTTCTGACGAGACCTCTGGC 59.396 55.000 0.00 0.00 0.00 4.85
161 162 1.067495 GGTTTCTGACGAGACCTCTGG 60.067 57.143 0.00 0.00 40.38 3.86
162 163 1.401670 CGGTTTCTGACGAGACCTCTG 60.402 57.143 0.00 0.00 41.14 3.35
163 164 0.882474 CGGTTTCTGACGAGACCTCT 59.118 55.000 0.00 0.00 41.14 3.69
164 165 0.109226 CCGGTTTCTGACGAGACCTC 60.109 60.000 0.00 0.00 41.14 3.85
165 166 0.538977 TCCGGTTTCTGACGAGACCT 60.539 55.000 0.00 0.00 41.14 3.85
166 167 0.109226 CTCCGGTTTCTGACGAGACC 60.109 60.000 0.00 0.00 40.19 3.85
167 168 0.733223 GCTCCGGTTTCTGACGAGAC 60.733 60.000 0.00 0.00 0.00 3.36
168 169 1.585006 GCTCCGGTTTCTGACGAGA 59.415 57.895 0.00 0.00 0.00 4.04
169 170 1.801913 CGCTCCGGTTTCTGACGAG 60.802 63.158 0.00 0.00 0.00 4.18
170 171 2.257371 CGCTCCGGTTTCTGACGA 59.743 61.111 0.00 0.00 0.00 4.20
171 172 3.479269 GCGCTCCGGTTTCTGACG 61.479 66.667 0.00 0.00 0.00 4.35
172 173 3.479269 CGCGCTCCGGTTTCTGAC 61.479 66.667 5.56 0.00 0.00 3.51
173 174 3.986006 ACGCGCTCCGGTTTCTGA 61.986 61.111 5.73 0.00 42.52 3.27
174 175 3.777925 CACGCGCTCCGGTTTCTG 61.778 66.667 5.73 0.00 42.52 3.02
189 190 2.747460 TTGATGCGCCAGCTCCAC 60.747 61.111 4.18 0.00 45.42 4.02
190 191 2.747460 GTTGATGCGCCAGCTCCA 60.747 61.111 4.18 0.00 45.42 3.86
191 192 3.869272 CGTTGATGCGCCAGCTCC 61.869 66.667 4.18 0.00 45.42 4.70
192 193 3.869272 CCGTTGATGCGCCAGCTC 61.869 66.667 4.18 0.00 45.42 4.09
196 197 4.652131 AACCCCGTTGATGCGCCA 62.652 61.111 4.18 0.00 0.00 5.69
197 198 4.114997 CAACCCCGTTGATGCGCC 62.115 66.667 4.18 0.00 45.28 6.53
198 199 4.776647 GCAACCCCGTTGATGCGC 62.777 66.667 0.00 0.00 45.28 6.09
199 200 4.114997 GGCAACCCCGTTGATGCG 62.115 66.667 8.65 0.00 45.28 4.73
200 201 2.988684 TGGCAACCCCGTTGATGC 60.989 61.111 8.65 0.00 45.28 3.91
201 202 1.303236 TCTGGCAACCCCGTTGATG 60.303 57.895 8.65 0.00 45.28 3.07
202 203 1.002134 CTCTGGCAACCCCGTTGAT 60.002 57.895 8.65 0.00 45.28 2.57
203 204 2.429930 CTCTGGCAACCCCGTTGA 59.570 61.111 8.65 0.00 45.28 3.18
204 205 2.672996 CCTCTGGCAACCCCGTTG 60.673 66.667 0.08 0.08 45.24 4.10
241 242 1.226435 CTCCTCTTCCGAGCGAACG 60.226 63.158 0.00 0.00 35.90 3.95
242 243 1.139947 CCTCCTCTTCCGAGCGAAC 59.860 63.158 0.00 0.00 35.90 3.95
243 244 0.611062 TTCCTCCTCTTCCGAGCGAA 60.611 55.000 0.00 0.00 35.90 4.70
244 245 1.001269 TTCCTCCTCTTCCGAGCGA 60.001 57.895 0.00 0.00 35.90 4.93
245 246 1.435515 CTTCCTCCTCTTCCGAGCG 59.564 63.158 0.00 0.00 35.90 5.03
246 247 1.681486 CCCTTCCTCCTCTTCCGAGC 61.681 65.000 0.00 0.00 35.90 5.03
247 248 1.045911 CCCCTTCCTCCTCTTCCGAG 61.046 65.000 0.00 0.00 37.01 4.63
248 249 1.001760 CCCCTTCCTCCTCTTCCGA 59.998 63.158 0.00 0.00 0.00 4.55
249 250 0.617820 TTCCCCTTCCTCCTCTTCCG 60.618 60.000 0.00 0.00 0.00 4.30
250 251 1.208706 CTTCCCCTTCCTCCTCTTCC 58.791 60.000 0.00 0.00 0.00 3.46
251 252 0.544223 GCTTCCCCTTCCTCCTCTTC 59.456 60.000 0.00 0.00 0.00 2.87
252 253 0.916845 GGCTTCCCCTTCCTCCTCTT 60.917 60.000 0.00 0.00 0.00 2.85
253 254 1.307430 GGCTTCCCCTTCCTCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
254 255 0.990818 ATGGCTTCCCCTTCCTCCTC 60.991 60.000 0.00 0.00 0.00 3.71
255 256 0.346932 TATGGCTTCCCCTTCCTCCT 59.653 55.000 0.00 0.00 0.00 3.69
256 257 0.767998 CTATGGCTTCCCCTTCCTCC 59.232 60.000 0.00 0.00 0.00 4.30
257 258 0.109532 GCTATGGCTTCCCCTTCCTC 59.890 60.000 0.00 0.00 35.22 3.71
258 259 2.235570 GCTATGGCTTCCCCTTCCT 58.764 57.895 0.00 0.00 35.22 3.36
259 260 4.909678 GCTATGGCTTCCCCTTCC 57.090 61.111 0.00 0.00 35.22 3.46
269 270 4.274459 CAGTTTGGTAATCAGAGCTATGGC 59.726 45.833 8.78 0.00 39.06 4.40
270 271 5.674525 TCAGTTTGGTAATCAGAGCTATGG 58.325 41.667 8.78 0.00 0.00 2.74
271 272 5.236047 GCTCAGTTTGGTAATCAGAGCTATG 59.764 44.000 0.69 0.69 42.60 2.23
272 273 5.363939 GCTCAGTTTGGTAATCAGAGCTAT 58.636 41.667 0.00 0.00 42.60 2.97
273 274 4.678044 CGCTCAGTTTGGTAATCAGAGCTA 60.678 45.833 0.00 0.00 43.43 3.32
274 275 3.604582 GCTCAGTTTGGTAATCAGAGCT 58.395 45.455 0.00 0.00 42.60 4.09
275 276 2.349886 CGCTCAGTTTGGTAATCAGAGC 59.650 50.000 0.00 0.00 42.50 4.09
276 277 3.849911 TCGCTCAGTTTGGTAATCAGAG 58.150 45.455 0.00 0.00 0.00 3.35
277 278 3.953712 TCGCTCAGTTTGGTAATCAGA 57.046 42.857 0.00 0.00 0.00 3.27
278 279 4.183865 TGATCGCTCAGTTTGGTAATCAG 58.816 43.478 0.00 0.00 0.00 2.90
279 280 4.200838 TGATCGCTCAGTTTGGTAATCA 57.799 40.909 0.00 0.00 0.00 2.57
280 281 5.294306 TGATTGATCGCTCAGTTTGGTAATC 59.706 40.000 0.00 0.00 31.68 1.75
281 282 5.065218 GTGATTGATCGCTCAGTTTGGTAAT 59.935 40.000 0.00 0.00 34.59 1.89
282 283 4.391830 GTGATTGATCGCTCAGTTTGGTAA 59.608 41.667 0.00 0.00 34.59 2.85
283 284 3.932710 GTGATTGATCGCTCAGTTTGGTA 59.067 43.478 0.00 0.00 34.59 3.25
284 285 2.744202 GTGATTGATCGCTCAGTTTGGT 59.256 45.455 0.00 0.00 34.59 3.67
285 286 2.743664 TGTGATTGATCGCTCAGTTTGG 59.256 45.455 6.16 0.00 38.12 3.28
286 287 3.434641 AGTGTGATTGATCGCTCAGTTTG 59.565 43.478 6.16 0.00 38.12 2.93
287 288 3.668447 AGTGTGATTGATCGCTCAGTTT 58.332 40.909 6.16 0.00 38.12 2.66
288 289 3.056250 AGAGTGTGATTGATCGCTCAGTT 60.056 43.478 6.16 0.00 41.75 3.16
289 290 2.495270 AGAGTGTGATTGATCGCTCAGT 59.505 45.455 6.16 0.00 41.75 3.41
290 291 2.858941 CAGAGTGTGATTGATCGCTCAG 59.141 50.000 6.16 0.00 41.75 3.35
291 292 2.232208 ACAGAGTGTGATTGATCGCTCA 59.768 45.455 6.16 0.00 41.75 4.26
292 293 2.886081 ACAGAGTGTGATTGATCGCTC 58.114 47.619 6.16 2.90 40.25 5.03
313 314 7.176285 TGTACGTGTAAACAGTTATGGAAAC 57.824 36.000 0.00 0.00 0.00 2.78
314 315 7.966246 ATGTACGTGTAAACAGTTATGGAAA 57.034 32.000 0.00 0.00 0.00 3.13
315 316 9.089601 CATATGTACGTGTAAACAGTTATGGAA 57.910 33.333 0.00 0.00 0.00 3.53
316 317 7.707464 CCATATGTACGTGTAAACAGTTATGGA 59.293 37.037 16.86 0.00 39.21 3.41
317 318 7.707464 TCCATATGTACGTGTAAACAGTTATGG 59.293 37.037 16.19 16.19 38.72 2.74
318 319 8.637281 TCCATATGTACGTGTAAACAGTTATG 57.363 34.615 0.00 0.94 0.00 1.90
319 320 9.656040 TTTCCATATGTACGTGTAAACAGTTAT 57.344 29.630 0.00 0.00 0.00 1.89
320 321 9.142515 CTTTCCATATGTACGTGTAAACAGTTA 57.857 33.333 0.00 0.00 0.00 2.24
321 322 7.360607 GCTTTCCATATGTACGTGTAAACAGTT 60.361 37.037 0.00 0.00 0.00 3.16
322 323 6.091713 GCTTTCCATATGTACGTGTAAACAGT 59.908 38.462 0.00 0.00 0.00 3.55
323 324 6.456449 GGCTTTCCATATGTACGTGTAAACAG 60.456 42.308 0.00 0.00 0.00 3.16
324 325 5.352016 GGCTTTCCATATGTACGTGTAAACA 59.648 40.000 0.00 0.00 0.00 2.83
325 326 5.352016 TGGCTTTCCATATGTACGTGTAAAC 59.648 40.000 0.00 0.00 37.47 2.01
326 327 5.489249 TGGCTTTCCATATGTACGTGTAAA 58.511 37.500 0.00 0.00 37.47 2.01
327 328 5.087391 TGGCTTTCCATATGTACGTGTAA 57.913 39.130 0.00 0.00 37.47 2.41
328 329 4.689071 CTGGCTTTCCATATGTACGTGTA 58.311 43.478 0.00 0.00 42.51 2.90
329 330 3.531538 CTGGCTTTCCATATGTACGTGT 58.468 45.455 0.00 0.00 42.51 4.49
330 331 2.287915 GCTGGCTTTCCATATGTACGTG 59.712 50.000 0.00 0.00 42.51 4.49
331 332 2.561569 GCTGGCTTTCCATATGTACGT 58.438 47.619 1.24 0.00 42.51 3.57
332 333 1.873591 GGCTGGCTTTCCATATGTACG 59.126 52.381 1.24 0.00 42.51 3.67
333 334 2.158608 AGGGCTGGCTTTCCATATGTAC 60.159 50.000 1.24 0.00 42.51 2.90
334 335 2.135189 AGGGCTGGCTTTCCATATGTA 58.865 47.619 1.24 0.00 42.51 2.29
335 336 0.929244 AGGGCTGGCTTTCCATATGT 59.071 50.000 1.24 0.00 42.51 2.29
336 337 2.158623 TGTAGGGCTGGCTTTCCATATG 60.159 50.000 0.00 0.00 42.51 1.78
337 338 2.135189 TGTAGGGCTGGCTTTCCATAT 58.865 47.619 0.00 0.00 42.51 1.78
338 339 1.590591 TGTAGGGCTGGCTTTCCATA 58.409 50.000 0.00 0.00 42.51 2.74
339 340 0.929244 ATGTAGGGCTGGCTTTCCAT 59.071 50.000 0.00 0.00 42.51 3.41
340 341 0.034186 CATGTAGGGCTGGCTTTCCA 60.034 55.000 0.00 0.00 40.85 3.53
341 342 1.387295 GCATGTAGGGCTGGCTTTCC 61.387 60.000 0.00 0.00 0.00 3.13
342 343 0.680921 TGCATGTAGGGCTGGCTTTC 60.681 55.000 0.00 0.00 0.00 2.62
343 344 0.251742 TTGCATGTAGGGCTGGCTTT 60.252 50.000 0.00 0.00 0.00 3.51
344 345 0.682209 CTTGCATGTAGGGCTGGCTT 60.682 55.000 0.00 0.00 0.00 4.35
345 346 1.077212 CTTGCATGTAGGGCTGGCT 60.077 57.895 0.00 0.00 0.00 4.75
346 347 2.123428 CCTTGCATGTAGGGCTGGC 61.123 63.158 0.00 0.00 0.00 4.85
347 348 2.123428 GCCTTGCATGTAGGGCTGG 61.123 63.158 26.36 7.01 41.20 4.85
348 349 1.378911 TGCCTTGCATGTAGGGCTG 60.379 57.895 31.41 1.29 44.36 4.85
349 350 1.379044 GTGCCTTGCATGTAGGGCT 60.379 57.895 31.41 0.00 44.36 5.19
350 351 2.764314 CGTGCCTTGCATGTAGGGC 61.764 63.158 26.79 26.79 41.91 5.19
351 352 3.501396 CGTGCCTTGCATGTAGGG 58.499 61.111 7.64 7.64 41.91 3.53
370 371 4.609018 CTAGCGCCACCATCCGGG 62.609 72.222 2.29 0.00 44.81 5.73
371 372 2.383245 AATCTAGCGCCACCATCCGG 62.383 60.000 2.29 0.00 38.77 5.14
372 373 0.317160 TAATCTAGCGCCACCATCCG 59.683 55.000 2.29 0.00 0.00 4.18
373 374 1.338200 CCTAATCTAGCGCCACCATCC 60.338 57.143 2.29 0.00 0.00 3.51
374 375 1.344763 ACCTAATCTAGCGCCACCATC 59.655 52.381 2.29 0.00 0.00 3.51
375 376 1.344763 GACCTAATCTAGCGCCACCAT 59.655 52.381 2.29 0.00 0.00 3.55
376 377 0.750850 GACCTAATCTAGCGCCACCA 59.249 55.000 2.29 0.00 0.00 4.17
377 378 1.041437 AGACCTAATCTAGCGCCACC 58.959 55.000 2.29 0.00 35.15 4.61
378 379 3.119424 GGATAGACCTAATCTAGCGCCAC 60.119 52.174 2.29 0.00 45.70 5.01
379 380 3.090037 GGATAGACCTAATCTAGCGCCA 58.910 50.000 2.29 0.00 45.70 5.69
380 381 3.786516 GGATAGACCTAATCTAGCGCC 57.213 52.381 2.29 0.00 45.70 6.53
390 391 6.856140 AGACCTAGTCTTTAGGGATAGACCTA 59.144 42.308 5.32 0.00 40.28 3.08
391 392 5.677741 AGACCTAGTCTTTAGGGATAGACCT 59.322 44.000 5.32 0.00 40.28 3.85
392 393 5.955944 AGACCTAGTCTTTAGGGATAGACC 58.044 45.833 5.32 0.00 40.28 3.85
393 394 6.942005 GGTAGACCTAGTCTTTAGGGATAGAC 59.058 46.154 2.05 0.00 40.28 2.59
394 395 6.856140 AGGTAGACCTAGTCTTTAGGGATAGA 59.144 42.308 0.00 0.00 46.48 1.98
395 396 7.093965 AGGTAGACCTAGTCTTTAGGGATAG 57.906 44.000 0.00 0.00 46.48 2.08
411 412 6.285990 TCTTTCTGTTGTAACAAGGTAGACC 58.714 40.000 0.00 0.00 38.66 3.85
412 413 7.781548 TTCTTTCTGTTGTAACAAGGTAGAC 57.218 36.000 0.00 0.00 38.66 2.59
413 414 7.825270 TGTTTCTTTCTGTTGTAACAAGGTAGA 59.175 33.333 0.00 0.00 38.66 2.59
414 415 7.981142 TGTTTCTTTCTGTTGTAACAAGGTAG 58.019 34.615 0.00 0.00 38.66 3.18
415 416 7.925043 TGTTTCTTTCTGTTGTAACAAGGTA 57.075 32.000 0.00 0.00 38.66 3.08
416 417 6.827586 TGTTTCTTTCTGTTGTAACAAGGT 57.172 33.333 0.00 0.00 38.66 3.50
417 418 8.402472 TGTATGTTTCTTTCTGTTGTAACAAGG 58.598 33.333 0.00 0.00 38.66 3.61
418 419 9.781834 TTGTATGTTTCTTTCTGTTGTAACAAG 57.218 29.630 0.00 0.00 38.66 3.16
419 420 9.562583 GTTGTATGTTTCTTTCTGTTGTAACAA 57.437 29.630 0.00 0.00 38.66 2.83
420 421 8.731605 TGTTGTATGTTTCTTTCTGTTGTAACA 58.268 29.630 0.00 0.00 37.37 2.41
421 422 9.562583 TTGTTGTATGTTTCTTTCTGTTGTAAC 57.437 29.630 0.00 0.00 0.00 2.50
422 423 9.562583 GTTGTTGTATGTTTCTTTCTGTTGTAA 57.437 29.630 0.00 0.00 0.00 2.41
423 424 8.185505 GGTTGTTGTATGTTTCTTTCTGTTGTA 58.814 33.333 0.00 0.00 0.00 2.41
424 425 7.033185 GGTTGTTGTATGTTTCTTTCTGTTGT 58.967 34.615 0.00 0.00 0.00 3.32
425 426 6.475402 GGGTTGTTGTATGTTTCTTTCTGTTG 59.525 38.462 0.00 0.00 0.00 3.33
426 427 6.153680 TGGGTTGTTGTATGTTTCTTTCTGTT 59.846 34.615 0.00 0.00 0.00 3.16
427 428 5.654650 TGGGTTGTTGTATGTTTCTTTCTGT 59.345 36.000 0.00 0.00 0.00 3.41
428 429 6.142818 TGGGTTGTTGTATGTTTCTTTCTG 57.857 37.500 0.00 0.00 0.00 3.02
429 430 6.569780 GTTGGGTTGTTGTATGTTTCTTTCT 58.430 36.000 0.00 0.00 0.00 2.52
430 431 5.457473 CGTTGGGTTGTTGTATGTTTCTTTC 59.543 40.000 0.00 0.00 0.00 2.62
431 432 5.105675 ACGTTGGGTTGTTGTATGTTTCTTT 60.106 36.000 0.00 0.00 0.00 2.52
432 433 4.399934 ACGTTGGGTTGTTGTATGTTTCTT 59.600 37.500 0.00 0.00 0.00 2.52
433 434 3.949113 ACGTTGGGTTGTTGTATGTTTCT 59.051 39.130 0.00 0.00 0.00 2.52
434 435 4.295857 ACGTTGGGTTGTTGTATGTTTC 57.704 40.909 0.00 0.00 0.00 2.78
435 436 4.722361 AACGTTGGGTTGTTGTATGTTT 57.278 36.364 0.00 0.00 37.50 2.83
436 437 7.507733 TTATAACGTTGGGTTGTTGTATGTT 57.492 32.000 11.99 0.00 39.75 2.71
437 438 7.175293 ACATTATAACGTTGGGTTGTTGTATGT 59.825 33.333 11.99 3.65 39.75 2.29
438 439 7.531716 ACATTATAACGTTGGGTTGTTGTATG 58.468 34.615 11.99 3.09 39.75 2.39
439 440 7.690952 ACATTATAACGTTGGGTTGTTGTAT 57.309 32.000 11.99 0.00 39.75 2.29
440 441 8.666573 CATACATTATAACGTTGGGTTGTTGTA 58.333 33.333 11.99 9.73 39.75 2.41
441 442 7.175293 ACATACATTATAACGTTGGGTTGTTGT 59.825 33.333 11.99 12.31 39.75 3.32
442 443 7.483375 CACATACATTATAACGTTGGGTTGTTG 59.517 37.037 11.99 11.81 39.75 3.33
443 444 7.390996 TCACATACATTATAACGTTGGGTTGTT 59.609 33.333 11.99 0.00 39.75 2.83
444 445 6.879993 TCACATACATTATAACGTTGGGTTGT 59.120 34.615 11.99 11.77 39.75 3.32
445 446 7.148390 TGTCACATACATTATAACGTTGGGTTG 60.148 37.037 11.99 6.34 34.40 3.77
446 447 6.879993 TGTCACATACATTATAACGTTGGGTT 59.120 34.615 11.99 0.00 36.49 4.11
447 448 6.408035 TGTCACATACATTATAACGTTGGGT 58.592 36.000 11.99 4.37 31.43 4.51
448 449 6.537301 ACTGTCACATACATTATAACGTTGGG 59.463 38.462 11.99 0.00 37.50 4.12
449 450 7.534085 ACTGTCACATACATTATAACGTTGG 57.466 36.000 11.99 0.00 37.50 3.77
450 451 8.652463 TGAACTGTCACATACATTATAACGTTG 58.348 33.333 11.99 0.00 37.50 4.10
451 452 8.766000 TGAACTGTCACATACATTATAACGTT 57.234 30.769 5.88 5.88 37.50 3.99
452 453 8.653338 GTTGAACTGTCACATACATTATAACGT 58.347 33.333 0.00 0.00 37.50 3.99
453 454 8.652463 TGTTGAACTGTCACATACATTATAACG 58.348 33.333 0.00 0.00 37.50 3.18
458 459 9.676195 CAAATTGTTGAACTGTCACATACATTA 57.324 29.630 0.00 0.00 35.56 1.90
459 460 7.652909 CCAAATTGTTGAACTGTCACATACATT 59.347 33.333 0.00 0.00 35.56 2.71
460 461 7.014134 TCCAAATTGTTGAACTGTCACATACAT 59.986 33.333 0.00 0.00 35.56 2.29
461 462 6.319911 TCCAAATTGTTGAACTGTCACATACA 59.680 34.615 0.00 0.00 36.83 2.29
462 463 6.636850 GTCCAAATTGTTGAACTGTCACATAC 59.363 38.462 0.00 0.00 36.83 2.39
463 464 6.238897 GGTCCAAATTGTTGAACTGTCACATA 60.239 38.462 0.00 0.00 36.83 2.29
464 465 5.451798 GGTCCAAATTGTTGAACTGTCACAT 60.452 40.000 0.00 0.00 36.83 3.21
465 466 4.142271 GGTCCAAATTGTTGAACTGTCACA 60.142 41.667 0.00 0.00 36.83 3.58
466 467 4.142271 TGGTCCAAATTGTTGAACTGTCAC 60.142 41.667 0.00 0.00 36.83 3.67
467 468 4.019858 TGGTCCAAATTGTTGAACTGTCA 58.980 39.130 0.00 0.00 36.83 3.58
468 469 4.647424 TGGTCCAAATTGTTGAACTGTC 57.353 40.909 0.00 0.00 36.83 3.51
469 470 4.648762 TCATGGTCCAAATTGTTGAACTGT 59.351 37.500 0.00 0.00 36.83 3.55
470 471 5.199024 TCATGGTCCAAATTGTTGAACTG 57.801 39.130 0.00 0.00 36.83 3.16
471 472 5.867903 TTCATGGTCCAAATTGTTGAACT 57.132 34.783 0.00 0.00 36.83 3.01
472 473 6.238347 GGTTTTCATGGTCCAAATTGTTGAAC 60.238 38.462 0.00 0.00 36.83 3.18
473 474 5.819901 GGTTTTCATGGTCCAAATTGTTGAA 59.180 36.000 0.00 0.00 36.83 2.69
474 475 5.130145 AGGTTTTCATGGTCCAAATTGTTGA 59.870 36.000 0.00 0.00 36.83 3.18
475 476 5.367302 AGGTTTTCATGGTCCAAATTGTTG 58.633 37.500 0.00 0.00 34.25 3.33
476 477 5.366477 AGAGGTTTTCATGGTCCAAATTGTT 59.634 36.000 0.00 0.00 0.00 2.83
477 478 4.901250 AGAGGTTTTCATGGTCCAAATTGT 59.099 37.500 0.00 0.00 0.00 2.71
478 479 5.473066 AGAGGTTTTCATGGTCCAAATTG 57.527 39.130 0.00 0.00 0.00 2.32
479 480 7.610580 TTTAGAGGTTTTCATGGTCCAAATT 57.389 32.000 0.00 0.00 0.00 1.82
480 481 7.508977 TCTTTTAGAGGTTTTCATGGTCCAAAT 59.491 33.333 0.00 0.00 0.00 2.32
492 493 5.358725 TCGGTTGCTTTCTTTTAGAGGTTTT 59.641 36.000 0.00 0.00 0.00 2.43
497 498 6.673316 GCATACTCGGTTGCTTTCTTTTAGAG 60.673 42.308 0.00 0.00 35.95 2.43
498 499 5.121768 GCATACTCGGTTGCTTTCTTTTAGA 59.878 40.000 0.00 0.00 35.95 2.10
499 500 5.106712 TGCATACTCGGTTGCTTTCTTTTAG 60.107 40.000 0.00 0.00 39.60 1.85
514 515 3.304559 GCTAGTGTTGAACTGCATACTCG 59.695 47.826 0.00 0.00 40.26 4.18
532 533 2.203308 TCCTCCCGCCTACGCTAG 60.203 66.667 0.00 0.00 38.22 3.42
533 534 2.203308 CTCCTCCCGCCTACGCTA 60.203 66.667 0.00 0.00 38.22 4.26
579 580 1.076412 TGTGCCAGTGCCTTCCAAA 60.076 52.632 0.00 0.00 36.33 3.28
580 581 1.827789 GTGTGCCAGTGCCTTCCAA 60.828 57.895 0.00 0.00 36.33 3.53
581 582 2.203337 GTGTGCCAGTGCCTTCCA 60.203 61.111 0.00 0.00 36.33 3.53
583 584 0.607489 ATCAGTGTGCCAGTGCCTTC 60.607 55.000 5.43 0.00 35.04 3.46
584 585 0.692476 TATCAGTGTGCCAGTGCCTT 59.308 50.000 5.43 0.00 35.04 4.35
585 586 0.692476 TTATCAGTGTGCCAGTGCCT 59.308 50.000 5.43 0.10 35.04 4.75
586 587 1.755179 ATTATCAGTGTGCCAGTGCC 58.245 50.000 5.43 0.00 35.04 5.01
587 588 3.535561 ACTATTATCAGTGTGCCAGTGC 58.464 45.455 5.43 0.00 35.04 4.40
594 595 8.256611 ACTACAAGCAAACTATTATCAGTGTG 57.743 34.615 0.00 0.00 36.91 3.82
595 596 8.848474 AACTACAAGCAAACTATTATCAGTGT 57.152 30.769 0.00 0.00 0.00 3.55
599 600 9.953565 ACCTAAACTACAAGCAAACTATTATCA 57.046 29.630 0.00 0.00 0.00 2.15
661 666 6.106877 TCAGATTTTAACATAACGCAGAGC 57.893 37.500 0.00 0.00 0.00 4.09
769 774 4.380023 GCATAGGCAGGATACGAGAAGTAG 60.380 50.000 0.00 0.00 46.39 2.57
851 864 3.575805 TCAATGGCTCCCTTGTTCTTTT 58.424 40.909 4.30 0.00 0.00 2.27
947 966 8.918658 CAGTTTCGTTTATGTGTAAGCTACTAA 58.081 33.333 0.00 0.00 0.00 2.24
1111 1317 1.005662 CACGTAGATGTTGATGCAGCG 60.006 52.381 0.00 0.00 0.00 5.18
1116 1322 5.590104 TGTTGTTCACGTAGATGTTGATG 57.410 39.130 0.00 0.00 0.00 3.07
1317 1523 1.078214 GAGGCACACCATAGCAGCA 60.078 57.895 0.00 0.00 39.06 4.41
1318 1524 2.176273 CGAGGCACACCATAGCAGC 61.176 63.158 0.00 0.00 39.06 5.25
1319 1525 2.176273 GCGAGGCACACCATAGCAG 61.176 63.158 0.00 0.00 39.06 4.24
1366 1572 4.497300 TGTATTTACCTACGCTTCACACC 58.503 43.478 0.00 0.00 0.00 4.16
1402 1608 7.584987 ACTCTCATTTCAAAGAAAATACACCG 58.415 34.615 0.00 0.00 0.00 4.94
1484 2106 1.337447 ACGGATAAAGTCGTGGTGTGG 60.337 52.381 0.00 0.00 38.25 4.17
1518 2140 4.627611 ACATCATGAAGAAATTCAGCGG 57.372 40.909 4.68 0.00 34.02 5.52
1563 2185 5.415077 TGGAAATTCGTTTAGCCCGATTTAA 59.585 36.000 0.00 0.00 33.81 1.52
1564 2186 4.942483 TGGAAATTCGTTTAGCCCGATTTA 59.058 37.500 0.00 0.00 33.81 1.40
1565 2187 3.759618 TGGAAATTCGTTTAGCCCGATTT 59.240 39.130 0.00 0.00 33.81 2.17
1604 2226 5.652891 GGAGACTACCAAGTGAGACATTAGA 59.347 44.000 0.00 0.00 35.56 2.10
1608 2230 2.755655 CGGAGACTACCAAGTGAGACAT 59.244 50.000 0.00 0.00 35.56 3.06
1610 2232 1.135344 GCGGAGACTACCAAGTGAGAC 60.135 57.143 0.00 0.00 35.56 3.36
1611 2233 1.174783 GCGGAGACTACCAAGTGAGA 58.825 55.000 0.00 0.00 35.56 3.27
1612 2234 0.888619 TGCGGAGACTACCAAGTGAG 59.111 55.000 0.00 0.00 35.56 3.51
1613 2235 0.888619 CTGCGGAGACTACCAAGTGA 59.111 55.000 0.00 0.00 35.56 3.41
1614 2236 0.603569 ACTGCGGAGACTACCAAGTG 59.396 55.000 12.26 0.00 35.56 3.16
1615 2237 1.339097 AACTGCGGAGACTACCAAGT 58.661 50.000 12.26 0.00 39.21 3.16
1616 2238 3.587797 TTAACTGCGGAGACTACCAAG 57.412 47.619 12.26 0.00 0.00 3.61
1631 2253 4.948004 GGGAAGATGGGACGAAAATTAACT 59.052 41.667 0.00 0.00 0.00 2.24
1674 2298 2.978946 GCGGGAATTGGGAGGTGGA 61.979 63.158 0.00 0.00 0.00 4.02
1694 2320 5.049543 CGAAACTAGGAGGTAGGATCGTTAG 60.050 48.000 0.00 0.00 36.74 2.34
1704 2330 2.496899 ACCGACGAAACTAGGAGGTA 57.503 50.000 0.00 0.00 0.00 3.08
1755 2381 1.150536 GGTTTGTCAGGCCAGTGGA 59.849 57.895 15.20 0.00 0.00 4.02
1774 2400 7.916128 TCATTGTGTTACCAAATAAACGTTG 57.084 32.000 0.00 0.00 0.00 4.10
1829 2455 8.931385 TGATTACCATTCGTTAGTTAGGTTAC 57.069 34.615 0.00 0.00 0.00 2.50
1835 2461 9.878667 TGAAGATTGATTACCATTCGTTAGTTA 57.121 29.630 0.00 0.00 32.10 2.24
1866 2618 7.378966 TGTTGTCTTGTATGTTTGGTTTTTGA 58.621 30.769 0.00 0.00 0.00 2.69
1886 2638 8.632679 ACTGTGATAAAGTGAATTGATTGTTGT 58.367 29.630 0.00 0.00 0.00 3.32
1902 2654 7.939039 ACCAAAGAAGAATCTGACTGTGATAAA 59.061 33.333 8.70 0.00 35.59 1.40
1903 2655 7.453393 ACCAAAGAAGAATCTGACTGTGATAA 58.547 34.615 8.70 0.00 35.59 1.75
1950 2702 8.356657 TGTTTCGTTTGTTTGGAGATTGATTAT 58.643 29.630 0.00 0.00 0.00 1.28
1970 2722 6.143919 GCAGGAAAAAGAACCTTATTGTTTCG 59.856 38.462 0.00 0.00 33.91 3.46
1986 2738 0.178975 ATGGTCCGTGGCAGGAAAAA 60.179 50.000 9.09 0.00 42.77 1.94
2050 2802 3.479505 GTGAGATACGGGATCAGATCG 57.520 52.381 2.48 0.00 36.98 3.69
2137 2889 2.040144 GCCCTTCTGTAGGCCCATCTA 61.040 57.143 0.00 0.00 43.76 1.98
2169 2921 2.509422 GGCGGTGGGATAGGGTTC 59.491 66.667 0.00 0.00 0.00 3.62
2210 2962 3.657448 ATCGCCGCCAACACATCGA 62.657 57.895 0.00 0.00 0.00 3.59
2273 3025 0.686789 GCCTTTGATTGGTTGCCCTT 59.313 50.000 0.00 0.00 0.00 3.95
2329 3081 2.037367 TCCGTGTGGAGGAGGAGG 59.963 66.667 0.00 0.00 40.17 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.