>input_sequence_81932
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---------------------------------------------------------------------ATGGGTGTAGA
AGGTGGTTCGTCGGCGTCGGCGTCGAGGTGCAGGAGCACGGGGGCGACGATGTCGGTGGCGCCGGCGAGCGGCGGTAACA
ACGC----------------------------------------------------------------------------
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--------------CCGCTGCTGC------CGCTGCCGCTGCATCAACATCTACGTGAACAACAACGTGCAGGGCGTCAC
CAACTCCGTGCTCTTCGGGAGCAGCGTGGTCATGAGAGACCCTGGAGCTCGCGTCGTCCCGTCCCGCCGTCCGCCGCGCG
CAGCTCGTGTTTGCCGCGGAAAGCAGAGGCGGCAACAGAAGAAAAAGAAGATGATGAAGACGACGATGTGGGCTGCTGCT
GCTGCTGCTATGGTGTGCCTCGCGGCCCTCGCCATCATTGTTCTGGTGCTGGGTGTGAAGCGTAGGTAA-----------
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>chr5A_1_TraesCS5A01G160700
GGGTGATGTAGTTCCTCCAGCGCGTGAAGTTGCGGCCGTCGAGCGCAAGTTTGAAGTCGATGACGCCGGCGACGGTGGAC
GGGAGAGGTGGGGGAGGATTGGAGGAGGAAGGCAGGGTCAAGGGGGTGGGTGGGATGGCTGCAAGAGGAAGACCGCCGGA
GCCAGAGGTCTCGTCAGAAACCGGAGCGCGTGGAGCTGGCGCATCAACGGGGTTGCCAGAGGCGGCGGCAGCGGCATCAG
CCGTTCGCTCGGAAGAGGAGGAAGGGGAAGCCATAGCTCTGATTACCAAACTGAGCGATCAATCACACTCTGTGTTTCCA
TAACTGTTTACACGTACATATGGAAAGCCAGCCCTACATGCAAGGCACGTCCCGGATGGTGGCGCTAGATTAGGTCTATC
CCTAAAGACTAGGTCTACCTTGTTACAACAGAAAGAAACATACAACAACCCAACGTTATAATGTATGTGACAGTTCAACA
ATTTGGACCATGAAAACCTCTAAAAGAAAGCAACCGAGTATGCAGTTCAACACTAGCGTAGGCGGGAGGAGCATTGCGAT
TCAGAAGATTGATTGCGATTTTGGAAGGCACTGGCACACTGATAATAGTTTGC-TTGTAGTTTAGGTTGTGAAATATCAA
CGAAATAAAATGTT---AGCTTGAAGCTCTGCGTTATGTTAAAATCTGAATATATACTAACTGTCCCCATGGTCCAAATA
AGTGATCACGCGTAATTTCATCTGGTAACTTTCTGTTTATTTTACAGCATCATCTA----CTTCTCGTATCCTGCCTATG
CAATGAAGCACACTGGGCAATTAAGA----ATTTAAGATGCCTGTCCTATGCTGCAAGGCGCAAAAAGAACAAGGGAGCC
ATTGATGCCCGATGCTTTTCTTGGCGTTGGAGCAAAGAACAACAACG----CGCGCCTCCTTCATCTCCTTGTA--GTAC
TAGTATTAGTAGCTTACACATAAACGAAACTGGGGCCTGTGATTGTGAATACAAGG-----------GGATGGGTGTAGA
AGGTGGTTCGTCGGCGTCGGCGTCGAGGTGCAGGAGCACGGGGGCGACGATGTCGGTGGCGCCGGCGAGCGGCGGTAACA
ACGC----------------------------------------------------------------------------
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--------------CCGCTGCTGC------CGCTGCCGCTGCATCAACATCTACGTGAACAACAACGTGCAGGGCGTCAC
CAACTCCGTGCTCTTCGGGAGCAGCGTGGTCATGAGAGACCCTGGAGCTCGCGTCGTCCCGTCCCGCCGTCCGCCGCGCG
CAGCTCGTGTTTGCCGCGGAAAGCAGAGGCGGCAACAGAAGAAAAAGAAGATGATGAAGACGACGATGTGGGCTGCTGCT
GCTGCTGCTATGGTGTGCCTCGCGGCCCTCGCCATCATTGTTCTGGTGCTGGGTGTGAAGCGTAGGTAAATACAGCTAGA
GTTTATTC------------------------------------------------------------------------
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GGTGTATTTTCTTTGAAATGAGAGTTG-----------------------AATTCAGGTTTATCTATGCGTGTGTGGTTC
TCCAAAGTGAAAA-AAGGAACACCGCCACACCACGACTTTATCCGTCTTTTTTGTGGTTCCGCTGAATTTCTTCATGATG
TTGTGAAGTGAGTGGTATTTTTTTTTAAATCGGGCTAAACGAATTTCCATTATATAATCTCTACTTCTAATGTCTCACTT
GGTAGTCTCCGCAGTTAATTTTCGTCCCATCTTCCCTGG--TTTTTTCGTCCTCCCTTCCACCTCCCAATTCCC--GCAC
TAACGATCCTACCTCCTAGTTTCGTCGGTTTTTTTTCGTCGATTTTTTACTCACCCCCCTTCCACTGGCCTGACAAACCC
AACGTTTATTTGGTAACACAATGAATTCACATATGGTGATTGATTTCTTCTTTGGTAACCTAACTAACGAATGGTAATCA
ATCTTC--------------------------------------------------------------------------
----------------------------------------------------AAATATCAAAAACCAAACATACAAGACA
ACAATCAATTCACTTTATCACAGTCAGATTCTTCTTTGGTACCCAGCTTAACTCACGAATGATAATCAATCTCCAAACAA
ACGAAACAATAAGGTTCTTTTTCCTGCCACGGACCATCTCCTGCCTGCCTGGTCATCGTCTGATTCCCACGCCCACGCCC
ACGATCTGATCCCGTATCTCACGCATGATTTTTTTTTCTTTCTCTAAAAACCACCTTAATTACTCTCTGCCAAATCTCTT
TCCTTCCCTAGATGGGCCTACAGAAGGGCAATCTCCAACCGAACCCTATCCCACCGCCGGCCCGCCGGGCGCTTCTGCTC
ATCGATGTGTTGGCGGCGATGTCACCGCGTGAACACCTGCCACAAGGCCCTCGCCTGACTTGAGAAGGGCAACCAATCAA
AGGCGCTACGAGCCCTCAAGCATCACGGCAGGGGAGCGCTCCTCCTCCTCCACACGGATGACATCGTGCGCCTCGCGCTG
CCATGGTCCTCACCG
>chr2A_4
---TGATGTAGTTCCGCCAGCGCGTGAAGTTGCGGCCGTCGAGCGCA---------------------------------
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----------------------------------AGCTTGAAGTCGATGATGCCGGCGACGCTGGCCGGGAGAGGTGGGG
GAGGGTTGGAGGAGGAAGGTAGGGTCGAGGTGTTGGGTGGGATAGCTGCAAGAGGGAGACCATCGGAGGCAGGGGTCTCG
TCAAACACCGGAGCACATGGACGCGCATCAACAGGGTTACCGGCGGCCTCGGCTGTGGTGGCGGCGGCAGTTGCGGCGGC
CTTAGCAGTGGCTGCAGCTGCGGT------GGCAGTGGCTGGATCGATATCAACGG------------------------
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--------------TGCGTGAGGGAGAGGAGGAAGGTCAGC---------------------------------------
----------------------------------------------------------------CGTACATGCAGATACA
G-------------------------------------------------------------------------------
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--------------------------------------------------------------------CCGTACATGTAG
TGGCTGGA-------------------------------------TCAGCTCTGATTACCAAACTGAGCGATCAATCACA
CGTTGTATTCCATATCTCATTACATGTATATATAGAAAGCTAGCCGTACATGCAGGGCACGTCCCGGATGATGGCACTAG
ACTAGGACTATCCTAAAGACTAAGCCTACCTTGTTACAACAACAGACAAAAGATATA-CAACAACCAGACGAGCAACGTT
ACAATGTATCGTGACAGTTCAACA--------------------------------------------------------
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>chr5D_482
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-TTTGGACCATGGAAACAG-TAAAAGAAAGCAACAGAGTATGCAGTTCAACAGCAGCGTAGGCGGGAGGAGCATTGCGAT
TCAGAAGATTGATTGCGATGCAGTTCAAC------------ATAATAGTTTGCTTTGTAGTTTAAGCTGTGAAACATCAA
CGAAATAGTAAAATGGCAGCTTGAACCTCTGCGTTATGTTAAAATCTGAATATAT----ACTGTCCCCATGGTCCAAATA
AGTGATCACGCGTAATCTCGTCTGGTAACTTTCTGTTTATTTTACAGCATCGTTCAT-GTCTTCTCGTATCCTGCCTATG
CAATGAAGCACACTGGGCAATTAAGA----ATTTAAGATGCCTGTCCTAAGCTGCAAGGTGCAGAAAGAACAAGAGAGCC
ATTGATGCCCGATGCTTTTCTTGGCGTTGGAGCAAAGAACAACAACG----CGCGCCTCCTTCATTTCCTTCCCT-----
--GTACTAGTAGCTTACACATAAACGAAACTGGGGCCTGTGATTGTGAATACAAGGGGACTGAGTGAGGATGGGTGTTGG
AGGTGGTTCGTCGGCGTCGGCGTCGAGGTGCAGGAGCACGGGGGCGACGATGTCGGTGGCGCCGGCGAGCGGCGGTAACA
GCGT----------------------------------------------------------------------------
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--------------CCGCTGCTGC------CGCTGC------ATCAACATCTACTTGAACAACAACGTGCAGGGCGTCAC
CAACTCCGTGCTCTTCGGGAGCAGCGTGGTCATGAGGGACCCCGGAGCTAGCGTCGTCCCGTCCCGCCGTCCGCCGCGCG
CTGCCCGTGTTTGCTGCCGAAGGCAGAGGCGGCAACAGAGGAAAAAGAAGATGATGAAGACGACGATGTGGGCTGCTGCT
GCGATTATT------TGCCTCGCGGCCCTCGCCATCATTGTTCTGGTGCTGAGCGTGAAGCGTACGTAAATGCAGCTAGA
GTTTATTTCAGGTTT-----------------------------------------------------------------
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----TTTTTTCTTTGAAATCAGAGGTCAGGTTTATCTATTTTTTGAAAGAAATTCAGGTTTATCTATGCGTGTGTGGTTC
TCCAAAGTGAAAA-AAGGAACACCGACACACCACGAATTTATCCCTCTTTTTTGTGGTTTCGCTGA-TTTCTTCATGATG
TTTTGAAATGAGCGGTATTTTTTT---AATCGGGCTAAA-----------------------------------------
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>chr5B_751
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----------------------------------GTTTATTTTACAGCATCATTTCACGTCTTCTCGTATCCTGCCTATG
CAATGAAGCACACTGGTTAATTAAGAATTTATTTAAGATGCCTGTCCTAAGCTGCAAGGCGCAGAAAGAACAAGAGAGCC
ATTGATTCCCGATGCTTTTCTTGGCGTTAGAGCAAAGAGCAGCAACACCTACGCGCCTCCTTCATTTCCTTCCTTGGTGC
TAGTACTAGTACCTTACACATAAACGCAATTGGGGCCTGTGATTGTGAATACGAGGGGATCGGGCGAGGATGGGTGTAGA
AGGTGGTTCGTCGGTGGCGGCGTCGAGGTGCAGGAGCACGGGGGCGACGATGTCGGTGGCGCCGGCGAGCGGTGGTAACA
GCGC----------------------------------------------------------------------------
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--------------CTGCTGCTGCCGCTGCCGCTGC------ATCAACATCTATGTGAACAACAACGTGCAGGGCGTCAC
CAACTCGGTGCTCTTCGGGAGCAGCGTGGTCATGAGAGGTCCCGGAGCTCGCGTCGTCCCGTCCCGCCGTCCGCCGGGCG
CCGCTTGTGTTTGCCACGGAAAGCAGAGGCGGCAACCGAAGAAACTGAAGATGATGAAGACGACGGTGTGTGCTGCTGCT
GC---TGCTATGGTGTGCCTCGCGGCCCTCGCTATCATTGTTCTGGTGCTGAGTGTGAAGCGTAGGTAAATAAGAGTAAT
GGTACACATCCATAAGTTTACACGGGTTTTACACACAGGTAGGTTTTGATTGGAGATTAAGGGGGAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAGAAAAAAATCATAGTCAACGTGTAATTTCGTGTAACTCTTTGTATGTTTAGCATTATTTA
GGTGTTTTTTCTTTGAAATGTGAGTTG-----------------------AATTCAGGTTTACCTATGCGTGTGTGGTTC
TCCAAAGTGAAAAGAAGGAACATCG-CACACGACGACTTTATCCGTATTTTTTATG------------------------
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>chr1D_1581
AATTTCATTAGGTC------------------------------------------------------------------
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-----------------------------------------------------ATAATCTCTACTCCTATTAG-----TT
GGTAGTCTCCGCGGTTAATTTTCGTCCCATCTTCCGTGGGTTTTTTTCGTCCTCCCTCCCACCTCCCAATTCCCCCGCAG
TAACGATCCCACCTCCCAGTTTCGTCGGGTTTTTT--GTCGGTTTTTTATTCGCCCCCCTCCCACTGGCCGTACAAACCT
AACATTTATTTGGTAACACAATGAATTCACATATGGTGATTGATTTCTTCTTTGATAACCCAACTAACGGATGGTAATCA
ATCTTC--------------------------------------------------------------------------
----------------------------------------------------AAATA-CCAAAACCAAACGTATAAGGCA
ACAATCAATTCACG-TATCATAATCAGATTCTTCTTTAGTACCCAGCTTAACTGACGGATAGTAATCAATCTCCAAACAA
AGGAAACAATAAGGTTCCTTTTCTTGCCACGGACCATCTCCTACCTGCCTGGTCATCGTCCGACTCCCACCCCCACGCCC
AAGATACGATCCCGTATCTCACGCATGA----TTTTTCTTTCTCTAAAAACCACCTTAATTACTCTCTGCCAAATCTCTT
TCCTTCCCCAGATGGGCCTACAGAAGGGCAATCTCCAACCAAACCCTATCCCACCATCGGCCCGCCGAGCGCTTCTGCTC
ACCGATGTGTTGGCGGCGATGTCACCGCGTGAACACCTGCCACAAGGCCCTCGCCTGACTTGAGCAGGGCAACCAATCAA
AGGCTCTACGAGCCCTCAAGCATCATGGCGGGGGAGCACTGCTCCTCCTCCACACGGATGACATCGTGCGCCTCGCGCTG
CCATGGTCCTCACCG
>chr7A_1790
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--------------AACACAATGAATTCACATATGATGATTGATCGCTTCTTTGATAACCCAACTAACGGATGGTAATCA
ATCTTT--------------------------------------------------------------------------
----------------------------------------------------AAATA-CCAAAATCAAATGTACAAGGCA
ACAATCAATTCACG-TATGACAATCAAATTCTTCTTTAGTATCCAGCTTAACTCACGAATGGTAATCAATCTCCAAAAAA
A--AAACAATAAGGTTCCTTTTCCTACCACGGACCATCTCCTGCCTGCCTGGTCATCGTCCGACTCCTACCCTCACGCCC
ATGATACGATCCTGTATCTCACGCATGA----TTTTTCTTTCTCTAAATACCACCTTAATTACTCTCTGCCAAATCTCTT
TCCTTCCCCAGATGGGCCTACAGAAGGGCAATCTCCAACCAAACCCTATCACACCGCCGGCCCGCCGGGCGCTTCTGCTC
ACCGATGTGTTGGCGGCGATGTCACCGCGTGAACACCTGCCACAAGGCCCTCGCCAGACTTGAGCAGGGCAACCGATCAA
AGGCGCTACGAGCCCTCAAGCATCACGGCGGGGGAGCGCTGCTCCTCCTCATCACGAATGACATCGTGCGCCTCGCGCTG
CCATGGTCCTCACCG
>SNPs
SSS------------S-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-----------S----SSS--------------S-----------------SS--------------------------
-------------------SSS-SSSSS-SSSSSSSSSSSS-----------------------S-S-------S-----
-------SS-SSS------------S-----------------------------SSSS---------------------
----------------S--S---------------------------------S--------------------------
-------------------------------------------------S-------------S----------S-----
-----------------------------------------------------------------S-----SSS----S-
-----S--------------------------------------------------------------------------
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S-------------------------------------------------------------------------------
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------------------------------------S----S--------------------------------------
------------------------------------------S-------------------------------------
-S------------------------------------------------------------------------------
--SSS----------------------------------------------S----------------------------
-------S------------------------------------------------------------------------
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-----S--------------------------------------------------------------------------
-------------------------S---------------------------------S------S-------------
--S----S----S-----------SSS------------SSSSSSSSSSSSSS------------S---S-SSSSSSS--
------------S----------------------S---------------------S---------------------S
---------S------S-----------S------SS----S-------S--S-------S---------SS-------S
---S--------------------------------------------------S-----S--------S----------
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---------------------------------------------------------S------------S------S--
-------------SS-------S--------------S-----------------------S------------------
-S---------------S------------------------------------------S--S------S---------
-S---SS---------------------SSSS------------------------------------------------
--------S-------------------------------S---------------------------------------
-S--------------------------------------------------------------S---------------
-----------------------------S----------S---------------------------------------
---------------
>forward_360
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--------------------TGGAAAGCCAGCCCTACATG----------------------------------------
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>reverse_2738
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-----------------TTTTTCCTGCCACGGACCAT-------------------------------------------
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