Multiple sequence alignment - TraesCS5A01G152700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G152700 chr5A 100.000 5756 0 0 1 5756 329986300 329992055 0.000000e+00 10630.0
1 TraesCS5A01G152700 chr5A 82.578 287 50 0 3 289 393601319 393601605 2.660000e-63 254.0
2 TraesCS5A01G152700 chr5A 92.000 75 2 2 4988 5062 329991338 329991408 1.020000e-17 102.0
3 TraesCS5A01G152700 chr5D 91.487 1997 86 26 2795 4750 246006623 246008576 0.000000e+00 2669.0
4 TraesCS5A01G152700 chr5D 91.718 1449 80 20 393 1825 246004231 246005655 0.000000e+00 1975.0
5 TraesCS5A01G152700 chr5D 93.415 820 37 9 1948 2757 246005653 246006465 0.000000e+00 1199.0
6 TraesCS5A01G152700 chr5D 91.568 676 38 7 5090 5752 246008931 246009600 0.000000e+00 915.0
7 TraesCS5A01G152700 chr5D 91.496 341 23 2 2 341 246003674 246004009 1.130000e-126 464.0
8 TraesCS5A01G152700 chr5D 92.029 276 17 1 2 277 245995974 245996244 3.250000e-102 383.0
9 TraesCS5A01G152700 chr5D 81.034 348 59 3 1 341 169969709 169970056 2.640000e-68 270.0
10 TraesCS5A01G152700 chr5D 87.500 200 22 3 4815 5011 246008751 246008950 1.610000e-55 228.0
11 TraesCS5A01G152700 chr5B 92.011 1840 91 23 2919 4741 280600519 280602319 0.000000e+00 2532.0
12 TraesCS5A01G152700 chr5B 91.722 1196 64 20 649 1825 280598149 280599328 0.000000e+00 1628.0
13 TraesCS5A01G152700 chr5B 91.995 812 40 13 1959 2757 280599365 280600164 0.000000e+00 1116.0
14 TraesCS5A01G152700 chr5B 90.616 341 32 0 1 341 280597351 280597691 2.450000e-123 453.0
15 TraesCS5A01G152700 chr5B 89.956 229 21 1 5520 5746 280647046 280647274 1.570000e-75 294.0
16 TraesCS5A01G152700 chr5B 89.423 208 22 0 5344 5551 280646834 280647041 4.420000e-66 263.0
17 TraesCS5A01G152700 chr5B 96.403 139 5 0 2795 2933 280600322 280600460 4.490000e-56 230.0
18 TraesCS5A01G152700 chr5B 96.183 131 4 1 1824 1954 550230786 550230915 4.520000e-51 213.0
19 TraesCS5A01G152700 chr2B 83.630 281 45 1 14 293 657880666 657880946 4.420000e-66 263.0
20 TraesCS5A01G152700 chr2B 98.438 128 2 0 1824 1951 52386193 52386320 5.800000e-55 226.0
21 TraesCS5A01G152700 chr7D 81.346 327 44 8 2 320 588152968 588152651 3.440000e-62 250.0
22 TraesCS5A01G152700 chr7D 85.380 171 23 2 5486 5654 454079061 454079231 5.930000e-40 176.0
23 TraesCS5A01G152700 chr7B 81.911 293 50 3 2 292 661428600 661428309 1.600000e-60 244.0
24 TraesCS5A01G152700 chr6A 80.539 334 52 5 14 339 52177109 52177437 1.600000e-60 244.0
25 TraesCS5A01G152700 chr6A 86.667 165 20 2 5494 5658 184388170 184388332 1.270000e-41 182.0
26 TraesCS5A01G152700 chr1A 98.485 132 2 0 1824 1955 498666009 498666140 3.470000e-57 233.0
27 TraesCS5A01G152700 chr3A 99.213 127 1 0 1824 1950 359571953 359572079 4.490000e-56 230.0
28 TraesCS5A01G152700 chr4B 95.276 127 6 0 1824 1950 403671878 403672004 9.780000e-48 202.0
29 TraesCS5A01G152700 chr4B 88.889 153 17 0 5501 5653 438375181 438375333 7.610000e-44 189.0
30 TraesCS5A01G152700 chr2A 90.196 153 15 0 5501 5653 141506470 141506318 3.520000e-47 200.0
31 TraesCS5A01G152700 chr2A 86.957 161 19 2 5495 5653 79315997 79316157 4.580000e-41 180.0
32 TraesCS5A01G152700 chr4D 88.125 160 18 1 5501 5659 74079351 74079510 7.610000e-44 189.0
33 TraesCS5A01G152700 chr2D 88.312 154 18 0 5500 5653 410600826 410600673 9.850000e-43 185.0
34 TraesCS5A01G152700 chr7A 73.308 266 54 10 85 337 239543067 239542806 1.330000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G152700 chr5A 329986300 329992055 5755 False 5366.000000 10630 96.000000 1 5756 2 chr5A.!!$F2 5755
1 TraesCS5A01G152700 chr5D 246003674 246009600 5926 False 1241.666667 2669 91.197333 2 5752 6 chr5D.!!$F3 5750
2 TraesCS5A01G152700 chr5B 280597351 280602319 4968 False 1191.800000 2532 92.549400 1 4741 5 chr5B.!!$F2 4740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 962 0.108992 CACTGCGCAATTTCAGGCAT 60.109 50.0 13.05 0.0 34.49 4.40 F
1075 1292 0.251077 CAGCCTTTTCCTGCCACTCT 60.251 55.0 0.00 0.0 0.00 3.24 F
1137 1354 0.965866 ATTCCGGCTCTCGAGACACA 60.966 55.0 12.08 0.0 42.43 3.72 F
3066 3530 0.547712 TCCTACAGGCAAGGGAGCTT 60.548 55.0 0.00 0.0 34.66 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1868 1.072331 TGGGTGCTCTTCTCTGAAACC 59.928 52.381 0.00 0.00 0.00 3.27 R
3032 3496 0.178903 TAGGAGTTGCCTCAGGGTGT 60.179 55.000 0.00 0.00 46.97 4.16 R
3104 3568 0.323725 GGGAGCCTGGCTTTCATGAA 60.324 55.000 24.26 3.38 39.88 2.57 R
4834 5478 0.035439 CATGGTTACGGGCTCACCTT 60.035 55.000 0.00 0.00 36.97 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.379372 GCTTCATCCAGCAATGTATGTGT 59.621 43.478 0.00 0.00 39.83 3.72
59 60 1.542492 GGTCCTCCAGTACTTCACGA 58.458 55.000 0.00 0.00 0.00 4.35
68 69 1.197264 AGTACTTCACGACAGAGCGTC 59.803 52.381 0.00 0.00 43.59 5.19
77 78 1.799181 CGACAGAGCGTCCAACCTATG 60.799 57.143 0.00 0.00 42.07 2.23
203 204 1.151777 CTCCACACGTTCAACTGCGT 61.152 55.000 0.00 0.00 42.45 5.24
289 290 5.993055 TGTTCATGGATGATGTGTATGTCT 58.007 37.500 0.00 0.00 36.56 3.41
327 328 1.001924 TGAAACAAATCATGCACGCGT 60.002 42.857 5.58 5.58 0.00 6.01
328 329 2.050691 GAAACAAATCATGCACGCGTT 58.949 42.857 10.22 0.00 0.00 4.84
341 343 2.145905 CGCGTTGCCAAAAGATCGC 61.146 57.895 0.00 0.00 40.19 4.58
344 346 1.081509 GTTGCCAAAAGATCGCGCA 60.082 52.632 8.75 0.00 0.00 6.09
345 347 0.456653 GTTGCCAAAAGATCGCGCAT 60.457 50.000 8.75 0.00 0.00 4.73
346 348 0.456482 TTGCCAAAAGATCGCGCATG 60.456 50.000 8.75 0.00 0.00 4.06
347 349 1.304509 TGCCAAAAGATCGCGCATGA 61.305 50.000 8.75 0.00 0.00 3.07
348 350 0.179166 GCCAAAAGATCGCGCATGAA 60.179 50.000 8.75 0.00 0.00 2.57
349 351 1.732077 GCCAAAAGATCGCGCATGAAA 60.732 47.619 8.75 0.00 0.00 2.69
350 352 1.913403 CCAAAAGATCGCGCATGAAAC 59.087 47.619 8.75 0.00 0.00 2.78
351 353 2.583739 CAAAAGATCGCGCATGAAACA 58.416 42.857 8.75 0.00 0.00 2.83
352 354 2.979151 CAAAAGATCGCGCATGAAACAA 59.021 40.909 8.75 0.00 0.00 2.83
365 578 2.147150 TGAAACAATCATGAACCGCGA 58.853 42.857 8.23 0.00 31.50 5.87
377 590 0.606604 AACCGCGATGTAGTCCAAGT 59.393 50.000 8.23 0.00 0.00 3.16
407 620 3.781307 TTAGTGGCGGCTGCGGAT 61.781 61.111 12.29 1.54 44.10 4.18
425 638 0.249398 ATGTCCTACGGTGCCTTGAC 59.751 55.000 0.00 0.00 0.00 3.18
444 657 2.792947 GGCGGCCGGAGAGATACAA 61.793 63.158 29.38 0.00 0.00 2.41
445 658 1.367840 GCGGCCGGAGAGATACAAT 59.632 57.895 29.38 0.00 0.00 2.71
447 660 0.673985 CGGCCGGAGAGATACAATGA 59.326 55.000 20.10 0.00 0.00 2.57
462 675 0.242825 AATGACGGCGTCGAAAGAGA 59.757 50.000 31.90 15.39 43.49 3.10
465 678 0.109873 GACGGCGTCGAAAGAGAAGA 60.110 55.000 25.42 0.00 43.49 2.87
487 700 1.312371 GCGGATGCAAAGCAAGGGTA 61.312 55.000 0.00 0.00 43.62 3.69
508 721 3.467803 AGAGTGAAAGAAAAGTGGACCG 58.532 45.455 0.00 0.00 0.00 4.79
525 738 3.203716 GACCGGAATGGGTATTTGAGTC 58.796 50.000 9.46 0.00 44.64 3.36
552 765 6.741521 GCCGGGGATGTCAATATACTATATGG 60.742 46.154 2.18 0.00 0.00 2.74
574 787 2.176273 CGACGATCCGTACTCCCGT 61.176 63.158 0.00 0.00 41.37 5.28
581 794 3.428045 CGATCCGTACTCCCGTAAAGTTT 60.428 47.826 0.00 0.00 0.00 2.66
594 807 4.312403 CGTAAAGTTTATCACTGTTCGCG 58.688 43.478 0.00 0.00 35.12 5.87
597 810 3.247006 AGTTTATCACTGTTCGCGGAT 57.753 42.857 6.13 1.96 32.83 4.18
616 829 1.617018 TTGATCTCCACCGCTCCAGG 61.617 60.000 0.00 0.00 37.30 4.45
647 860 3.350833 GCTGTCTGATTTGGGATCAACT 58.649 45.455 0.00 0.00 31.78 3.16
699 912 0.872388 GTCATGTTCCCGTGGACAAC 59.128 55.000 0.00 0.00 0.00 3.32
718 931 3.053831 ACGACTTGATTCCGGTGAAAT 57.946 42.857 0.00 0.00 33.32 2.17
749 962 0.108992 CACTGCGCAATTTCAGGCAT 60.109 50.000 13.05 0.00 34.49 4.40
922 1135 2.029844 GCGTCCTGGACTGACTTGC 61.030 63.158 23.49 14.64 0.00 4.01
1022 1239 2.424234 CCTCCTCTTCTCTCGATTCCCT 60.424 54.545 0.00 0.00 0.00 4.20
1056 1273 4.462483 TCTTTACAGGCACAAAATCATCCC 59.538 41.667 0.00 0.00 0.00 3.85
1070 1287 1.000866 ATCCCAGCCTTTTCCTGCC 59.999 57.895 0.00 0.00 0.00 4.85
1075 1292 0.251077 CAGCCTTTTCCTGCCACTCT 60.251 55.000 0.00 0.00 0.00 3.24
1111 1328 2.975799 GTGAGCGCGTTTTCCCCA 60.976 61.111 8.43 0.00 0.00 4.96
1137 1354 0.965866 ATTCCGGCTCTCGAGACACA 60.966 55.000 12.08 0.00 42.43 3.72
1178 1395 4.000988 GGATTCTTTACTTGCTCGTTCCA 58.999 43.478 0.00 0.00 0.00 3.53
1194 1412 1.923356 TCCAAAAATCCCACTCTGCC 58.077 50.000 0.00 0.00 0.00 4.85
1216 1434 1.067142 CGCTGCTCCACTTACCTTGTA 60.067 52.381 0.00 0.00 0.00 2.41
1282 1500 2.281484 AACGGCGTGTGCTTCCAT 60.281 55.556 15.70 0.00 42.25 3.41
1316 1534 3.278157 GCAGCTTTAGGTGGTGGC 58.722 61.111 10.60 0.00 43.24 5.01
1340 1560 6.264067 GCATATAGAAGTTGGAATCTTTGCCT 59.736 38.462 0.00 0.00 0.00 4.75
1348 1568 5.838521 AGTTGGAATCTTTGCCTTCCTTTTA 59.161 36.000 3.27 0.00 41.29 1.52
1349 1569 6.498303 AGTTGGAATCTTTGCCTTCCTTTTAT 59.502 34.615 3.27 0.00 41.29 1.40
1350 1570 6.530019 TGGAATCTTTGCCTTCCTTTTATC 57.470 37.500 3.27 0.00 41.29 1.75
1351 1571 5.125417 TGGAATCTTTGCCTTCCTTTTATCG 59.875 40.000 3.27 0.00 41.29 2.92
1352 1572 5.125578 GGAATCTTTGCCTTCCTTTTATCGT 59.874 40.000 0.00 0.00 38.31 3.73
1354 1574 4.906618 TCTTTGCCTTCCTTTTATCGTCT 58.093 39.130 0.00 0.00 0.00 4.18
1355 1575 4.935808 TCTTTGCCTTCCTTTTATCGTCTC 59.064 41.667 0.00 0.00 0.00 3.36
1358 1578 2.822764 CCTTCCTTTTATCGTCTCCCG 58.177 52.381 0.00 0.00 38.13 5.14
1359 1579 2.167900 CCTTCCTTTTATCGTCTCCCGT 59.832 50.000 0.00 0.00 37.94 5.28
1361 1581 3.515330 TCCTTTTATCGTCTCCCGTTC 57.485 47.619 0.00 0.00 37.94 3.95
1362 1582 3.094572 TCCTTTTATCGTCTCCCGTTCT 58.905 45.455 0.00 0.00 37.94 3.01
1363 1583 3.119245 TCCTTTTATCGTCTCCCGTTCTG 60.119 47.826 0.00 0.00 37.94 3.02
1364 1584 2.288961 TTTATCGTCTCCCGTTCTGC 57.711 50.000 0.00 0.00 37.94 4.26
1390 1619 6.034161 TGCTCTTACTGTCTTTTACTACCC 57.966 41.667 0.00 0.00 0.00 3.69
1559 1788 2.492088 GGGTTTGTGATTAGGAAGTGGC 59.508 50.000 0.00 0.00 0.00 5.01
1600 1833 1.691976 TGGAACAGTCGTTGACCATCT 59.308 47.619 0.00 0.00 34.75 2.90
1601 1834 2.069273 GGAACAGTCGTTGACCATCTG 58.931 52.381 0.00 0.00 34.75 2.90
1620 1853 3.324846 TCTGTGTGTCTATCTTGGTGCTT 59.675 43.478 0.00 0.00 0.00 3.91
1635 1868 2.515523 CTTCAGGGCGAGCCATGG 60.516 66.667 25.57 7.63 46.68 3.66
1678 1911 5.205517 AGTGGATGGTTATGGAATTTGGA 57.794 39.130 0.00 0.00 0.00 3.53
1680 1913 5.658190 AGTGGATGGTTATGGAATTTGGAAG 59.342 40.000 0.00 0.00 0.00 3.46
1779 2022 6.024552 TGGTGAAATGATTGCTACCTTTTC 57.975 37.500 6.40 0.00 0.00 2.29
1784 2027 8.703336 GTGAAATGATTGCTACCTTTTCTTTTC 58.297 33.333 3.28 0.00 34.04 2.29
1785 2028 7.872483 TGAAATGATTGCTACCTTTTCTTTTCC 59.128 33.333 3.28 0.00 33.21 3.13
1827 2075 9.151471 TCATTTGCAAGTAGTTATCTTGTACTC 57.849 33.333 0.00 0.00 42.67 2.59
1828 2076 7.900782 TTTGCAAGTAGTTATCTTGTACTCC 57.099 36.000 0.00 0.00 42.67 3.85
1829 2077 5.974108 TGCAAGTAGTTATCTTGTACTCCC 58.026 41.667 7.35 0.00 42.67 4.30
1832 2080 6.683360 GCAAGTAGTTATCTTGTACTCCCTCC 60.683 46.154 7.35 0.00 42.67 4.30
1833 2081 5.131784 AGTAGTTATCTTGTACTCCCTCCG 58.868 45.833 0.00 0.00 0.00 4.63
1834 2082 3.978610 AGTTATCTTGTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
1835 2083 4.351127 AGTTATCTTGTACTCCCTCCGTT 58.649 43.478 0.00 0.00 0.00 4.44
1836 2084 4.401837 AGTTATCTTGTACTCCCTCCGTTC 59.598 45.833 0.00 0.00 0.00 3.95
1837 2085 1.171308 TCTTGTACTCCCTCCGTTCG 58.829 55.000 0.00 0.00 0.00 3.95
1840 2088 1.843368 TGTACTCCCTCCGTTCGAAT 58.157 50.000 0.00 0.00 0.00 3.34
1844 2092 3.521947 ACTCCCTCCGTTCGAATTTAG 57.478 47.619 0.00 0.00 0.00 1.85
1845 2093 3.094572 ACTCCCTCCGTTCGAATTTAGA 58.905 45.455 0.00 0.00 0.00 2.10
1846 2094 3.705072 ACTCCCTCCGTTCGAATTTAGAT 59.295 43.478 0.00 0.00 0.00 1.98
1847 2095 4.051922 CTCCCTCCGTTCGAATTTAGATG 58.948 47.826 0.00 0.00 0.00 2.90
1848 2096 3.702548 TCCCTCCGTTCGAATTTAGATGA 59.297 43.478 0.00 0.00 0.00 2.92
1849 2097 3.802685 CCCTCCGTTCGAATTTAGATGAC 59.197 47.826 0.00 0.00 0.00 3.06
1851 2099 5.109903 CCTCCGTTCGAATTTAGATGACTT 58.890 41.667 0.00 0.00 0.00 3.01
1852 2100 5.005779 CCTCCGTTCGAATTTAGATGACTTG 59.994 44.000 0.00 0.00 0.00 3.16
1853 2101 4.328983 TCCGTTCGAATTTAGATGACTTGC 59.671 41.667 0.00 0.00 0.00 4.01
1854 2102 4.092821 CCGTTCGAATTTAGATGACTTGCA 59.907 41.667 0.00 0.00 0.00 4.08
1856 2104 6.250819 CGTTCGAATTTAGATGACTTGCATT 58.749 36.000 0.00 0.00 37.34 3.56
1857 2105 6.742718 CGTTCGAATTTAGATGACTTGCATTT 59.257 34.615 0.00 0.00 37.34 2.32
1858 2106 7.253092 CGTTCGAATTTAGATGACTTGCATTTG 60.253 37.037 0.00 0.00 37.34 2.32
1860 2108 7.243487 TCGAATTTAGATGACTTGCATTTGTC 58.757 34.615 7.73 7.73 37.34 3.18
1861 2109 6.470235 CGAATTTAGATGACTTGCATTTGTCC 59.530 38.462 10.95 0.19 37.34 4.02
1862 2110 6.839124 ATTTAGATGACTTGCATTTGTCCA 57.161 33.333 10.95 2.76 37.34 4.02
1863 2111 5.627499 TTAGATGACTTGCATTTGTCCAC 57.373 39.130 10.95 6.53 37.34 4.02
1864 2112 3.489355 AGATGACTTGCATTTGTCCACA 58.511 40.909 10.95 0.00 37.34 4.17
1865 2113 4.084287 AGATGACTTGCATTTGTCCACAT 58.916 39.130 10.95 0.00 37.34 3.21
1866 2114 4.525487 AGATGACTTGCATTTGTCCACATT 59.475 37.500 10.95 0.00 37.34 2.71
1867 2115 3.979948 TGACTTGCATTTGTCCACATTG 58.020 40.909 10.95 0.00 32.67 2.82
1868 2116 3.243805 TGACTTGCATTTGTCCACATTGG 60.244 43.478 10.95 0.00 39.43 3.16
1869 2117 2.037511 ACTTGCATTTGTCCACATTGGG 59.962 45.455 0.00 0.00 38.32 4.12
1870 2118 2.006805 TGCATTTGTCCACATTGGGA 57.993 45.000 0.00 0.00 38.32 4.37
1871 2119 2.538222 TGCATTTGTCCACATTGGGAT 58.462 42.857 0.00 0.00 39.62 3.85
1872 2120 2.234168 TGCATTTGTCCACATTGGGATG 59.766 45.455 0.00 0.00 39.62 3.51
1873 2121 2.896168 CATTTGTCCACATTGGGATGC 58.104 47.619 0.00 0.00 39.62 3.91
1874 2122 2.006805 TTTGTCCACATTGGGATGCA 57.993 45.000 0.00 0.00 39.62 3.96
1875 2123 2.234896 TTGTCCACATTGGGATGCAT 57.765 45.000 0.00 0.00 39.62 3.96
1876 2124 1.766494 TGTCCACATTGGGATGCATC 58.234 50.000 18.81 18.81 39.62 3.91
1877 2125 1.285667 TGTCCACATTGGGATGCATCT 59.714 47.619 25.28 3.34 39.62 2.90
1878 2126 2.509131 TGTCCACATTGGGATGCATCTA 59.491 45.455 25.28 12.71 39.62 1.98
1879 2127 3.138839 TGTCCACATTGGGATGCATCTAT 59.861 43.478 25.28 13.74 39.62 1.98
1880 2128 4.350520 TGTCCACATTGGGATGCATCTATA 59.649 41.667 25.28 11.44 39.62 1.31
1881 2129 4.697352 GTCCACATTGGGATGCATCTATAC 59.303 45.833 25.28 13.88 39.62 1.47
1882 2130 4.598807 TCCACATTGGGATGCATCTATACT 59.401 41.667 25.28 5.24 38.32 2.12
1883 2131 5.073554 TCCACATTGGGATGCATCTATACTT 59.926 40.000 25.28 4.77 38.32 2.24
1884 2132 5.182570 CCACATTGGGATGCATCTATACTTG 59.817 44.000 25.28 16.76 36.72 3.16
1885 2133 5.766670 CACATTGGGATGCATCTATACTTGT 59.233 40.000 25.28 17.31 36.72 3.16
1886 2134 6.936335 CACATTGGGATGCATCTATACTTGTA 59.064 38.462 25.28 2.88 36.72 2.41
1887 2135 7.609146 CACATTGGGATGCATCTATACTTGTAT 59.391 37.037 25.28 4.88 36.72 2.29
1888 2136 8.825774 ACATTGGGATGCATCTATACTTGTATA 58.174 33.333 25.28 1.24 36.72 1.47
1889 2137 9.322773 CATTGGGATGCATCTATACTTGTATAG 57.677 37.037 25.28 17.26 0.00 1.31
1890 2138 8.435931 TTGGGATGCATCTATACTTGTATAGT 57.564 34.615 25.28 10.39 41.04 2.12
1891 2139 7.840931 TGGGATGCATCTATACTTGTATAGTG 58.159 38.462 25.28 18.42 37.73 2.74
1892 2140 7.454694 TGGGATGCATCTATACTTGTATAGTGT 59.545 37.037 25.28 12.11 37.73 3.55
1893 2141 7.976734 GGGATGCATCTATACTTGTATAGTGTC 59.023 40.741 25.28 14.04 37.73 3.67
1894 2142 8.744652 GGATGCATCTATACTTGTATAGTGTCT 58.255 37.037 25.28 12.52 37.73 3.41
1897 2145 9.232473 TGCATCTATACTTGTATAGTGTCTAGG 57.768 37.037 20.62 9.34 37.73 3.02
1898 2146 9.233649 GCATCTATACTTGTATAGTGTCTAGGT 57.766 37.037 20.62 0.00 37.73 3.08
1904 2152 7.820578 ACTTGTATAGTGTCTAGGTACATCC 57.179 40.000 0.00 0.00 35.19 3.51
1905 2153 6.485984 ACTTGTATAGTGTCTAGGTACATCCG 59.514 42.308 0.00 0.00 37.17 4.18
1906 2154 5.933617 TGTATAGTGTCTAGGTACATCCGT 58.066 41.667 0.00 0.00 41.99 4.69
1907 2155 6.359804 TGTATAGTGTCTAGGTACATCCGTT 58.640 40.000 0.00 0.00 41.99 4.44
1908 2156 6.830324 TGTATAGTGTCTAGGTACATCCGTTT 59.170 38.462 0.00 0.00 41.99 3.60
1909 2157 4.715527 AGTGTCTAGGTACATCCGTTTC 57.284 45.455 0.00 0.00 41.99 2.78
1910 2158 4.342359 AGTGTCTAGGTACATCCGTTTCT 58.658 43.478 0.00 0.00 41.99 2.52
1911 2159 5.503927 AGTGTCTAGGTACATCCGTTTCTA 58.496 41.667 0.00 0.00 41.99 2.10
1912 2160 5.589452 AGTGTCTAGGTACATCCGTTTCTAG 59.411 44.000 0.00 0.00 41.99 2.43
1913 2161 5.587844 GTGTCTAGGTACATCCGTTTCTAGA 59.412 44.000 0.00 0.00 41.99 2.43
1914 2162 5.587844 TGTCTAGGTACATCCGTTTCTAGAC 59.412 44.000 17.67 17.67 45.19 2.59
1915 2163 5.587844 GTCTAGGTACATCCGTTTCTAGACA 59.412 44.000 18.77 0.00 44.84 3.41
1916 2164 6.094603 GTCTAGGTACATCCGTTTCTAGACAA 59.905 42.308 18.77 0.00 44.84 3.18
1917 2165 5.733620 AGGTACATCCGTTTCTAGACAAA 57.266 39.130 0.00 0.00 41.99 2.83
1918 2166 6.295719 AGGTACATCCGTTTCTAGACAAAT 57.704 37.500 0.00 0.00 41.99 2.32
1919 2167 6.106673 AGGTACATCCGTTTCTAGACAAATG 58.893 40.000 0.00 0.00 41.99 2.32
1920 2168 6.070995 AGGTACATCCGTTTCTAGACAAATGA 60.071 38.462 0.00 0.00 41.99 2.57
1921 2169 6.592607 GGTACATCCGTTTCTAGACAAATGAA 59.407 38.462 0.00 0.00 0.00 2.57
1922 2170 7.118680 GGTACATCCGTTTCTAGACAAATGAAA 59.881 37.037 0.00 0.00 0.00 2.69
1923 2171 7.133891 ACATCCGTTTCTAGACAAATGAAAG 57.866 36.000 0.00 0.00 31.48 2.62
1924 2172 6.934645 ACATCCGTTTCTAGACAAATGAAAGA 59.065 34.615 0.00 0.00 31.48 2.52
1925 2173 6.780706 TCCGTTTCTAGACAAATGAAAGAC 57.219 37.500 0.00 0.00 31.48 3.01
1926 2174 6.285224 TCCGTTTCTAGACAAATGAAAGACA 58.715 36.000 0.00 0.00 31.48 3.41
1927 2175 6.934645 TCCGTTTCTAGACAAATGAAAGACAT 59.065 34.615 0.00 0.00 41.45 3.06
1928 2176 7.117812 TCCGTTTCTAGACAAATGAAAGACATC 59.882 37.037 0.00 0.00 38.38 3.06
1929 2177 7.118390 CCGTTTCTAGACAAATGAAAGACATCT 59.882 37.037 0.00 0.00 38.38 2.90
1930 2178 9.140286 CGTTTCTAGACAAATGAAAGACATCTA 57.860 33.333 0.00 0.00 38.38 1.98
1937 2185 9.300681 AGACAAATGAAAGACATCTAATTTGGA 57.699 29.630 18.91 0.00 38.38 3.53
1938 2186 9.912634 GACAAATGAAAGACATCTAATTTGGAA 57.087 29.630 18.91 0.00 38.38 3.53
1939 2187 9.696917 ACAAATGAAAGACATCTAATTTGGAAC 57.303 29.630 18.91 0.00 38.38 3.62
1940 2188 8.853345 CAAATGAAAGACATCTAATTTGGAACG 58.147 33.333 12.48 0.00 38.38 3.95
1941 2189 6.494893 TGAAAGACATCTAATTTGGAACGG 57.505 37.500 0.00 0.00 0.00 4.44
1942 2190 5.414454 TGAAAGACATCTAATTTGGAACGGG 59.586 40.000 0.00 0.00 0.00 5.28
1943 2191 3.886123 AGACATCTAATTTGGAACGGGG 58.114 45.455 0.00 0.00 0.00 5.73
1944 2192 2.949644 GACATCTAATTTGGAACGGGGG 59.050 50.000 0.00 0.00 0.00 5.40
2040 2293 1.371267 GCCCGCCGTTGTCTTTTTC 60.371 57.895 0.00 0.00 0.00 2.29
2094 2348 2.158885 GGGTCTAGAAGAAGCCATGACC 60.159 54.545 0.00 0.00 41.02 4.02
2097 2351 4.384647 GGTCTAGAAGAAGCCATGACCATT 60.385 45.833 0.00 0.00 41.29 3.16
2098 2352 5.163301 GGTCTAGAAGAAGCCATGACCATTA 60.163 44.000 0.00 0.00 41.29 1.90
2099 2353 6.349300 GTCTAGAAGAAGCCATGACCATTAA 58.651 40.000 0.00 0.00 0.00 1.40
2100 2354 6.481644 GTCTAGAAGAAGCCATGACCATTAAG 59.518 42.308 0.00 0.00 0.00 1.85
2222 2483 1.064654 GCATTTCTTGATGCGTCCCTC 59.935 52.381 2.83 0.00 42.51 4.30
2223 2484 2.636830 CATTTCTTGATGCGTCCCTCT 58.363 47.619 2.83 0.00 0.00 3.69
2224 2485 2.859165 TTTCTTGATGCGTCCCTCTT 57.141 45.000 2.83 0.00 0.00 2.85
2288 2549 3.977999 TCCTTCAGGTCTAGGGAAAACAA 59.022 43.478 0.00 0.00 36.34 2.83
2296 2557 9.053472 TCAGGTCTAGGGAAAACAATATTTCTA 57.947 33.333 0.00 0.00 38.92 2.10
2297 2558 9.331282 CAGGTCTAGGGAAAACAATATTTCTAG 57.669 37.037 0.00 0.00 38.92 2.43
2358 2619 5.987953 TCTGCAGTGCTTGATACATAATCTC 59.012 40.000 17.60 0.00 35.45 2.75
2361 2622 6.925718 TGCAGTGCTTGATACATAATCTCTAC 59.074 38.462 17.60 0.00 35.45 2.59
2434 2698 3.222173 TGCAGCTTAGTCAAGGGAAAA 57.778 42.857 0.00 0.00 31.96 2.29
2510 2774 3.691609 GGTTCTAACTGATGGAAGGCAAG 59.308 47.826 0.00 0.00 0.00 4.01
2596 2860 4.786425 AGAATTTCTGAGTAAGATGGGCC 58.214 43.478 0.00 0.00 33.93 5.80
2627 2891 8.365399 TCTAAAGTAAAACTGACATGACACAG 57.635 34.615 0.00 8.61 39.65 3.66
2692 2956 8.560374 GCAATCTTGACTTTGACTAGTTAAACT 58.440 33.333 8.64 0.87 0.00 2.66
2757 3026 7.486551 CACACTTTTTGAATCTTTCGGTAAACA 59.513 33.333 0.00 0.00 0.00 2.83
2759 3028 8.690840 CACTTTTTGAATCTTTCGGTAAACATC 58.309 33.333 0.00 0.00 0.00 3.06
2760 3029 7.865889 ACTTTTTGAATCTTTCGGTAAACATCC 59.134 33.333 0.00 0.00 0.00 3.51
2762 3031 4.571919 TGAATCTTTCGGTAAACATCCGT 58.428 39.130 4.36 0.00 46.86 4.69
2764 3033 5.121142 TGAATCTTTCGGTAAACATCCGTTC 59.879 40.000 4.36 1.98 46.86 3.95
2767 3036 5.058490 TCTTTCGGTAAACATCCGTTCTTT 58.942 37.500 4.36 0.00 46.86 2.52
2768 3037 6.222389 TCTTTCGGTAAACATCCGTTCTTTA 58.778 36.000 4.36 0.00 46.86 1.85
2769 3038 6.875195 TCTTTCGGTAAACATCCGTTCTTTAT 59.125 34.615 4.36 0.00 46.86 1.40
2770 3039 6.651755 TTCGGTAAACATCCGTTCTTTATC 57.348 37.500 4.36 0.00 46.86 1.75
2771 3040 4.799949 TCGGTAAACATCCGTTCTTTATCG 59.200 41.667 4.36 0.00 46.86 2.92
2772 3041 4.799949 CGGTAAACATCCGTTCTTTATCGA 59.200 41.667 0.00 0.00 42.62 3.59
2774 3043 6.183360 CGGTAAACATCCGTTCTTTATCGAAA 60.183 38.462 0.00 0.00 42.62 3.46
2775 3044 7.520686 GGTAAACATCCGTTCTTTATCGAAAA 58.479 34.615 0.00 0.00 32.91 2.29
2779 3048 9.471084 AAACATCCGTTCTTTATCGAAAAATTT 57.529 25.926 0.00 0.00 32.91 1.82
2787 3056 9.952341 GTTCTTTATCGAAAAATTTATTGTGGC 57.048 29.630 0.00 0.00 0.00 5.01
2788 3057 8.696410 TCTTTATCGAAAAATTTATTGTGGCC 57.304 30.769 0.00 0.00 0.00 5.36
2789 3058 7.762159 TCTTTATCGAAAAATTTATTGTGGCCC 59.238 33.333 0.00 0.00 0.00 5.80
2790 3059 4.195225 TCGAAAAATTTATTGTGGCCCC 57.805 40.909 0.00 0.00 0.00 5.80
2791 3060 3.835395 TCGAAAAATTTATTGTGGCCCCT 59.165 39.130 0.00 0.00 0.00 4.79
2792 3061 4.284746 TCGAAAAATTTATTGTGGCCCCTT 59.715 37.500 0.00 0.00 0.00 3.95
2793 3062 4.391523 CGAAAAATTTATTGTGGCCCCTTG 59.608 41.667 0.00 0.00 0.00 3.61
2864 3255 5.152623 ACATAAGTACACATGACAGCTGT 57.847 39.130 21.88 21.88 0.00 4.40
2882 3273 3.684788 GCTGTTGTACAAGGGATGTGTAG 59.315 47.826 8.98 0.00 43.77 2.74
2904 3295 8.467598 TGTAGCCTGTCTCTTACATTAGTAAAG 58.532 37.037 0.00 0.00 39.58 1.85
2976 3440 7.898918 TGCTAACTGTGGACTATACAAGTTTA 58.101 34.615 0.00 0.00 39.07 2.01
2977 3441 8.369424 TGCTAACTGTGGACTATACAAGTTTAA 58.631 33.333 0.00 0.00 39.07 1.52
2984 3448 9.214957 TGTGGACTATACAAGTTTAACAATCAG 57.785 33.333 0.00 0.00 39.07 2.90
3025 3489 7.566760 TGGTGTTTTATATGCAGAACCATAG 57.433 36.000 0.00 0.00 31.69 2.23
3026 3490 7.342581 TGGTGTTTTATATGCAGAACCATAGA 58.657 34.615 0.00 0.00 31.69 1.98
3062 3526 0.984230 CAACTCCTACAGGCAAGGGA 59.016 55.000 1.37 0.00 34.66 4.20
3066 3530 0.547712 TCCTACAGGCAAGGGAGCTT 60.548 55.000 0.00 0.00 34.66 3.74
3103 3567 2.246067 TCCTCTAAGGCTCCTGATCAGT 59.754 50.000 21.11 4.30 34.61 3.41
3104 3568 3.037549 CCTCTAAGGCTCCTGATCAGTT 58.962 50.000 21.11 10.85 0.00 3.16
3109 3573 3.278668 AGGCTCCTGATCAGTTTCATG 57.721 47.619 21.11 5.09 0.00 3.07
3118 3582 3.760151 TGATCAGTTTCATGAAAGCCAGG 59.240 43.478 21.05 9.13 31.76 4.45
3131 3595 1.000396 GCCAGGCTCCCATGTCTTT 60.000 57.895 3.29 0.00 0.00 2.52
3135 3599 1.304381 GGCTCCCATGTCTTTGCCA 60.304 57.895 0.00 0.00 40.04 4.92
3142 3606 1.167851 CATGTCTTTGCCACCATCGT 58.832 50.000 0.00 0.00 0.00 3.73
3179 3643 1.795286 CAACGAGTCTTCTTCTGTGCC 59.205 52.381 0.00 0.00 0.00 5.01
3205 3669 0.179111 GGCTATCTACGCAGTGTGCA 60.179 55.000 2.91 0.00 45.36 4.57
3215 3679 0.604780 GCAGTGTGCATCAGTGGAGT 60.605 55.000 19.18 0.00 44.93 3.85
3503 3967 6.154445 GTGTGAGAATTTCAGCAATGTGATT 58.846 36.000 0.00 0.00 36.21 2.57
3637 4101 5.946377 AGGAGCAATTTAGGAACAAGGTAAG 59.054 40.000 0.00 0.00 0.00 2.34
3638 4102 5.944007 GGAGCAATTTAGGAACAAGGTAAGA 59.056 40.000 0.00 0.00 0.00 2.10
3639 4103 6.433093 GGAGCAATTTAGGAACAAGGTAAGAA 59.567 38.462 0.00 0.00 0.00 2.52
3640 4104 7.362142 GGAGCAATTTAGGAACAAGGTAAGAAG 60.362 40.741 0.00 0.00 0.00 2.85
3641 4105 7.004691 AGCAATTTAGGAACAAGGTAAGAAGT 58.995 34.615 0.00 0.00 0.00 3.01
3642 4106 8.161425 AGCAATTTAGGAACAAGGTAAGAAGTA 58.839 33.333 0.00 0.00 0.00 2.24
3660 4124 6.694447 AGAAGTAATAGGCGAAACTACAACA 58.306 36.000 0.00 0.00 0.00 3.33
3668 4132 2.096713 GCGAAACTACAACAGTGCTCAG 60.097 50.000 0.00 0.00 37.63 3.35
3669 4133 3.381045 CGAAACTACAACAGTGCTCAGA 58.619 45.455 0.00 0.00 37.63 3.27
3672 4136 5.050091 CGAAACTACAACAGTGCTCAGATTT 60.050 40.000 0.00 0.00 37.63 2.17
3674 4138 5.931441 ACTACAACAGTGCTCAGATTTTC 57.069 39.130 0.00 0.00 35.62 2.29
3681 4145 5.858381 ACAGTGCTCAGATTTTCTCAACTA 58.142 37.500 0.00 0.00 0.00 2.24
3682 4146 5.931146 ACAGTGCTCAGATTTTCTCAACTAG 59.069 40.000 0.00 0.00 0.00 2.57
3683 4147 4.934602 AGTGCTCAGATTTTCTCAACTAGC 59.065 41.667 0.00 0.00 0.00 3.42
3686 4150 5.103000 GCTCAGATTTTCTCAACTAGCGTA 58.897 41.667 0.00 0.00 0.00 4.42
3694 4158 3.607741 TCTCAACTAGCGTAGTACTGCT 58.392 45.455 18.83 18.83 45.04 4.24
3695 4159 3.622163 TCTCAACTAGCGTAGTACTGCTC 59.378 47.826 18.52 1.73 42.48 4.26
3699 4163 5.466058 TCAACTAGCGTAGTACTGCTCTATC 59.534 44.000 18.52 0.00 42.48 2.08
3700 4164 4.317488 ACTAGCGTAGTACTGCTCTATCC 58.683 47.826 18.52 0.00 42.48 2.59
3702 4166 1.540707 GCGTAGTACTGCTCTATCCCC 59.459 57.143 5.39 0.00 0.00 4.81
3703 4167 1.805345 CGTAGTACTGCTCTATCCCCG 59.195 57.143 5.39 0.00 0.00 5.73
3704 4168 2.809665 CGTAGTACTGCTCTATCCCCGT 60.810 54.545 5.39 0.00 0.00 5.28
3713 4200 0.535335 TCTATCCCCGTTGTCTGTGC 59.465 55.000 0.00 0.00 0.00 4.57
3763 4250 4.003648 CTGAGTTATCCAAGGTGAACCAC 58.996 47.826 1.62 0.00 38.89 4.16
3804 4291 1.225745 GTTACTGCACATGCGACGC 60.226 57.895 14.19 14.19 45.83 5.19
3863 4350 0.528684 CGGTTCCCTCTTCGAGCATC 60.529 60.000 0.00 0.00 0.00 3.91
3894 4389 4.141779 TGAGCTGCACATCAGTATCTGAAT 60.142 41.667 1.02 0.00 44.04 2.57
3896 4391 6.111669 AGCTGCACATCAGTATCTGAATAT 57.888 37.500 1.02 0.00 44.04 1.28
3914 4417 8.435187 TCTGAATATCTTCCATATGCTGTTCTT 58.565 33.333 0.00 0.00 0.00 2.52
3923 4426 1.906990 ATGCTGTTCTTGCTTCTGCT 58.093 45.000 0.00 0.00 40.48 4.24
3946 4449 5.452078 ACTTCTCTCTCAGAAACAGTGAG 57.548 43.478 0.00 0.00 40.83 3.51
3977 4480 3.557577 TCCATGTTTTTCGATGCAGTG 57.442 42.857 0.00 0.00 0.00 3.66
4163 4666 3.104014 GTTCTGGAAGGACGACGAC 57.896 57.895 0.00 0.00 29.02 4.34
4166 4669 4.394078 TGGAAGGACGACGACGCG 62.394 66.667 3.53 3.53 43.96 6.01
4283 4786 4.459089 GAGGACCACGGCCTGCTC 62.459 72.222 0.00 0.00 35.44 4.26
4415 4918 0.742281 ATGTCGTGAGGCTGTGCATC 60.742 55.000 0.00 0.00 39.95 3.91
4550 5053 0.383590 AGCTCGAGATCATGTCCACG 59.616 55.000 18.75 0.00 0.00 4.94
4571 5074 3.554934 GGCATCCACCTGAAATGACATA 58.445 45.455 0.00 0.00 0.00 2.29
4572 5075 3.316308 GGCATCCACCTGAAATGACATAC 59.684 47.826 0.00 0.00 0.00 2.39
4573 5076 3.947196 GCATCCACCTGAAATGACATACA 59.053 43.478 0.00 0.00 0.00 2.29
4574 5077 4.036027 GCATCCACCTGAAATGACATACAG 59.964 45.833 12.70 12.70 0.00 2.74
4575 5078 4.908601 TCCACCTGAAATGACATACAGT 57.091 40.909 16.20 6.74 0.00 3.55
4576 5079 6.348498 CATCCACCTGAAATGACATACAGTA 58.652 40.000 16.20 0.00 0.00 2.74
4604 5107 8.488308 AAGGGAAGGATAATTATACTGTACGT 57.512 34.615 11.09 3.94 0.00 3.57
4605 5108 9.592196 AAGGGAAGGATAATTATACTGTACGTA 57.408 33.333 11.09 0.00 0.00 3.57
4606 5109 9.018582 AGGGAAGGATAATTATACTGTACGTAC 57.981 37.037 18.90 18.90 0.00 3.67
4607 5110 9.018582 GGGAAGGATAATTATACTGTACGTACT 57.981 37.037 25.12 9.79 0.00 2.73
4621 5124 6.744537 ACTGTACGTACTTACTAGATTTTGCG 59.255 38.462 25.12 0.00 0.00 4.85
4638 5141 6.784068 TTTTGCGTTTTAGTTTCTTCTTCG 57.216 33.333 0.00 0.00 0.00 3.79
4639 5142 5.473796 TTGCGTTTTAGTTTCTTCTTCGT 57.526 34.783 0.00 0.00 0.00 3.85
4641 5144 6.586868 TGCGTTTTAGTTTCTTCTTCGTTA 57.413 33.333 0.00 0.00 0.00 3.18
4642 5145 6.413269 TGCGTTTTAGTTTCTTCTTCGTTAC 58.587 36.000 0.00 0.00 0.00 2.50
4707 5215 4.371624 TTTGTCCTTGGATCACTGTGAT 57.628 40.909 22.45 22.45 40.34 3.06
4721 5229 5.748402 TCACTGTGATCCTGCATATTTCTT 58.252 37.500 6.36 0.00 0.00 2.52
4800 5444 6.757897 ATTGTGTTGAATATGTGTACCAGG 57.242 37.500 0.00 0.00 0.00 4.45
4801 5445 4.006989 TGTGTTGAATATGTGTACCAGGC 58.993 43.478 0.00 0.00 0.00 4.85
4802 5446 4.261801 GTGTTGAATATGTGTACCAGGCT 58.738 43.478 0.00 0.00 0.00 4.58
4803 5447 5.046231 TGTGTTGAATATGTGTACCAGGCTA 60.046 40.000 0.00 0.00 0.00 3.93
4804 5448 5.293569 GTGTTGAATATGTGTACCAGGCTAC 59.706 44.000 0.00 0.00 0.00 3.58
4805 5449 5.046231 TGTTGAATATGTGTACCAGGCTACA 60.046 40.000 0.00 0.00 0.00 2.74
4806 5450 5.685520 TGAATATGTGTACCAGGCTACAA 57.314 39.130 4.10 0.00 0.00 2.41
4807 5451 6.247229 TGAATATGTGTACCAGGCTACAAT 57.753 37.500 4.10 4.16 0.00 2.71
4808 5452 6.658849 TGAATATGTGTACCAGGCTACAATT 58.341 36.000 4.10 2.20 0.00 2.32
4809 5453 7.797062 TGAATATGTGTACCAGGCTACAATTA 58.203 34.615 4.10 1.48 0.00 1.40
4810 5454 8.436778 TGAATATGTGTACCAGGCTACAATTAT 58.563 33.333 4.10 3.17 0.00 1.28
4811 5455 9.938280 GAATATGTGTACCAGGCTACAATTATA 57.062 33.333 4.10 4.95 0.00 0.98
4812 5456 9.720769 AATATGTGTACCAGGCTACAATTATAC 57.279 33.333 4.10 0.00 0.00 1.47
4813 5457 6.801718 TGTGTACCAGGCTACAATTATACT 57.198 37.500 4.10 0.00 0.00 2.12
4814 5458 7.190335 TGTGTACCAGGCTACAATTATACTT 57.810 36.000 4.10 0.00 0.00 2.24
4815 5459 8.308851 TGTGTACCAGGCTACAATTATACTTA 57.691 34.615 4.10 0.00 0.00 2.24
4816 5460 8.930527 TGTGTACCAGGCTACAATTATACTTAT 58.069 33.333 4.10 0.00 0.00 1.73
4817 5461 9.204570 GTGTACCAGGCTACAATTATACTTATG 57.795 37.037 4.10 0.00 0.00 1.90
4818 5462 8.930527 TGTACCAGGCTACAATTATACTTATGT 58.069 33.333 0.00 0.00 0.00 2.29
4819 5463 9.204570 GTACCAGGCTACAATTATACTTATGTG 57.795 37.037 0.00 0.00 0.00 3.21
4834 5478 6.575244 ACTTATGTGATTTGGTAGATGGGA 57.425 37.500 0.00 0.00 0.00 4.37
4849 5493 1.078637 GGGAAGGTGAGCCCGTAAC 60.079 63.158 0.00 0.00 38.74 2.50
4853 5497 0.035439 AAGGTGAGCCCGTAACCATG 60.035 55.000 0.00 0.00 38.74 3.66
4857 5501 1.077716 GAGCCCGTAACCATGCCTT 60.078 57.895 0.00 0.00 0.00 4.35
4858 5502 1.376609 GAGCCCGTAACCATGCCTTG 61.377 60.000 0.00 0.00 0.00 3.61
4869 5513 1.481802 CCATGCCTTGGGATTAGCCAT 60.482 52.381 0.00 0.00 42.33 4.40
4872 5516 1.287442 TGCCTTGGGATTAGCCATGAA 59.713 47.619 0.00 0.00 38.95 2.57
4874 5518 2.423373 GCCTTGGGATTAGCCATGAAGA 60.423 50.000 0.00 0.00 38.95 2.87
4880 5524 4.166725 TGGGATTAGCCATGAAGATGAACT 59.833 41.667 0.00 0.00 38.95 3.01
4897 5541 7.925993 AGATGAACTTCGTTAACAAAACATCA 58.074 30.769 19.39 11.80 34.73 3.07
4899 5543 5.960683 TGAACTTCGTTAACAAAACATCACG 59.039 36.000 6.39 0.00 0.00 4.35
4900 5544 5.473796 ACTTCGTTAACAAAACATCACGT 57.526 34.783 6.39 0.00 0.00 4.49
4925 5569 5.470098 GTCCTGTCTACTTTTCTGCAATGAA 59.530 40.000 0.00 0.00 0.00 2.57
4927 5571 6.545666 TCCTGTCTACTTTTCTGCAATGAAAA 59.454 34.615 11.92 11.92 41.75 2.29
4928 5572 7.231317 TCCTGTCTACTTTTCTGCAATGAAAAT 59.769 33.333 12.64 7.43 42.63 1.82
4930 5574 8.801715 TGTCTACTTTTCTGCAATGAAAATTC 57.198 30.769 12.64 5.09 42.63 2.17
4931 5575 8.412456 TGTCTACTTTTCTGCAATGAAAATTCA 58.588 29.630 12.64 0.00 42.63 2.57
4933 5577 8.084073 TCTACTTTTCTGCAATGAAAATTCAGG 58.916 33.333 12.64 5.48 42.63 3.86
4934 5578 5.467735 ACTTTTCTGCAATGAAAATTCAGGC 59.532 36.000 12.64 12.87 42.63 4.85
4935 5579 4.877378 TTCTGCAATGAAAATTCAGGCT 57.123 36.364 17.78 0.00 41.08 4.58
4939 5583 5.697633 TCTGCAATGAAAATTCAGGCTTTTC 59.302 36.000 17.78 3.06 41.08 2.29
5018 5665 9.869757 ATTAATACATGTAGCATACTATTCGCA 57.130 29.630 11.91 0.00 43.54 5.10
5019 5666 9.699703 TTAATACATGTAGCATACTATTCGCAA 57.300 29.630 11.91 0.00 43.54 4.85
5020 5667 8.777865 AATACATGTAGCATACTATTCGCAAT 57.222 30.769 11.91 0.00 43.54 3.56
5021 5668 9.869757 AATACATGTAGCATACTATTCGCAATA 57.130 29.630 11.91 0.00 43.54 1.90
5022 5669 9.869757 ATACATGTAGCATACTATTCGCAATAA 57.130 29.630 11.91 0.00 43.54 1.40
5023 5670 8.601845 ACATGTAGCATACTATTCGCAATAAA 57.398 30.769 0.00 0.00 43.54 1.40
5024 5671 9.219603 ACATGTAGCATACTATTCGCAATAAAT 57.780 29.630 0.00 0.00 43.54 1.40
5069 5716 9.869757 ATTAATACATGTAGCATACTATTCGCA 57.130 29.630 11.91 0.00 43.54 5.10
5070 5717 9.699703 TTAATACATGTAGCATACTATTCGCAA 57.300 29.630 11.91 0.00 43.54 4.85
5071 5718 8.777865 AATACATGTAGCATACTATTCGCAAT 57.222 30.769 11.91 0.00 43.54 3.56
5072 5719 9.869757 AATACATGTAGCATACTATTCGCAATA 57.130 29.630 11.91 0.00 43.54 1.90
5073 5720 9.869757 ATACATGTAGCATACTATTCGCAATAA 57.130 29.630 11.91 0.00 43.54 1.40
5074 5721 8.601845 ACATGTAGCATACTATTCGCAATAAA 57.398 30.769 0.00 0.00 43.54 1.40
5075 5722 9.219603 ACATGTAGCATACTATTCGCAATAAAT 57.780 29.630 0.00 0.00 43.54 1.40
5135 5782 3.144506 CAGTGCTCCATATTCCACCATC 58.855 50.000 0.00 0.00 0.00 3.51
5149 5796 6.978343 TTCCACCATCGTAAAAGTTGATAG 57.022 37.500 0.00 0.00 0.00 2.08
5210 5860 9.994432 GATGCATATGGCTTAAGTTATTACATC 57.006 33.333 0.00 10.13 45.15 3.06
5246 5896 5.686960 GTTTGCAAACAATGGTCTTGCCAA 61.687 41.667 32.21 8.93 43.57 4.52
5255 5905 1.969923 TGGTCTTGCCAAAAATGAGGG 59.030 47.619 0.00 0.00 45.94 4.30
5256 5906 2.247358 GGTCTTGCCAAAAATGAGGGA 58.753 47.619 0.00 0.00 37.17 4.20
5257 5907 2.632512 GGTCTTGCCAAAAATGAGGGAA 59.367 45.455 0.00 0.00 37.17 3.97
5292 5942 3.427528 TCAAACTACTCGAACGAACATGC 59.572 43.478 0.00 0.00 0.00 4.06
5305 5955 4.356289 ACGAACATGCTAAACAAAACCAC 58.644 39.130 0.00 0.00 0.00 4.16
5308 5958 5.505654 CGAACATGCTAAACAAAACCACTCT 60.506 40.000 0.00 0.00 0.00 3.24
5311 5961 7.341445 ACATGCTAAACAAAACCACTCTAAA 57.659 32.000 0.00 0.00 0.00 1.85
5348 5998 3.118408 TCACTAGCACACCACTCAAACTT 60.118 43.478 0.00 0.00 0.00 2.66
5358 6008 6.878923 CACACCACTCAAACTTAATCCTATGA 59.121 38.462 0.00 0.00 0.00 2.15
5421 6071 8.480643 AATGAATGTAGAGAAAACTCGTAAGG 57.519 34.615 0.00 0.00 38.47 2.69
5471 6128 2.230994 TAGACAGCAAGAGCCCTGCG 62.231 60.000 0.00 0.00 43.56 5.18
5493 6150 8.958119 TGCGATAGAAATATTTACAAGAACCT 57.042 30.769 0.00 0.00 39.76 3.50
5510 6167 4.543337 AGAACCTAACTAGTACTCCCTCCA 59.457 45.833 0.00 0.00 0.00 3.86
5516 6173 3.288964 ACTAGTACTCCCTCCATTCACG 58.711 50.000 0.00 0.00 0.00 4.35
5564 6221 8.959734 TTATGAATTGGACGTATATAGACACG 57.040 34.615 0.00 0.98 43.63 4.49
5585 6242 5.854338 CACGTTTTAGTGTGTTTGTTCACTT 59.146 36.000 3.25 0.00 43.39 3.16
5586 6243 5.854338 ACGTTTTAGTGTGTTTGTTCACTTG 59.146 36.000 3.25 0.00 43.39 3.16
5594 6251 6.205853 AGTGTGTTTGTTCACTTGTTTGAGTA 59.794 34.615 0.00 0.00 41.33 2.59
5600 6257 9.169468 GTTTGTTCACTTGTTTGAGTATGTATG 57.831 33.333 0.00 0.00 0.00 2.39
5657 6314 0.759959 TGCACGGAGGGAGTAACAAA 59.240 50.000 0.00 0.00 0.00 2.83
5665 6322 5.472478 ACGGAGGGAGTAACAAATTTTTCTC 59.528 40.000 0.00 0.00 0.00 2.87
5666 6323 5.705905 CGGAGGGAGTAACAAATTTTTCTCT 59.294 40.000 0.00 0.00 0.00 3.10
5739 6399 9.638239 AAATGAAACACCATACAAATGATGTAC 57.362 29.630 0.00 0.00 46.90 2.90
5747 6407 6.208402 ACCATACAAATGATGTACTGCAAACA 59.792 34.615 4.18 4.18 46.90 2.83
5752 6412 6.864685 ACAAATGATGTACTGCAAACATTCTG 59.135 34.615 13.87 11.25 41.63 3.02
5753 6413 6.579666 AATGATGTACTGCAAACATTCTGT 57.420 33.333 13.87 0.00 37.69 3.41
5754 6414 7.686438 AATGATGTACTGCAAACATTCTGTA 57.314 32.000 13.87 0.00 37.69 2.74
5755 6415 6.726258 TGATGTACTGCAAACATTCTGTAG 57.274 37.500 13.87 0.00 37.69 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.532235 CCATGCACACACATACATTGC 58.468 47.619 0.00 0.00 0.00 3.56
47 48 1.069159 ACGCTCTGTCGTGAAGTACTG 60.069 52.381 0.00 0.00 41.62 2.74
59 60 0.108138 GCATAGGTTGGACGCTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
68 69 4.769688 TCTCTACACATTGCATAGGTTGG 58.230 43.478 0.00 0.00 0.00 3.77
203 204 0.601057 TCCGTCATGAAGTTCTGCGA 59.399 50.000 7.88 0.00 0.00 5.10
327 328 0.456482 CATGCGCGATCTTTTGGCAA 60.456 50.000 12.10 0.00 37.15 4.52
328 329 1.137194 CATGCGCGATCTTTTGGCA 59.863 52.632 12.10 0.00 38.09 4.92
344 346 2.746904 TCGCGGTTCATGATTGTTTCAT 59.253 40.909 6.13 0.00 46.27 2.57
345 347 2.147150 TCGCGGTTCATGATTGTTTCA 58.853 42.857 6.13 0.00 39.12 2.69
346 348 2.892373 TCGCGGTTCATGATTGTTTC 57.108 45.000 6.13 0.00 0.00 2.78
347 349 2.487762 ACATCGCGGTTCATGATTGTTT 59.512 40.909 6.13 0.00 0.00 2.83
348 350 2.083774 ACATCGCGGTTCATGATTGTT 58.916 42.857 6.13 0.00 0.00 2.83
349 351 1.737838 ACATCGCGGTTCATGATTGT 58.262 45.000 6.13 0.00 0.00 2.71
350 352 2.866156 ACTACATCGCGGTTCATGATTG 59.134 45.455 6.13 1.55 0.00 2.67
351 353 3.123804 GACTACATCGCGGTTCATGATT 58.876 45.455 6.13 0.00 0.00 2.57
352 354 2.545952 GGACTACATCGCGGTTCATGAT 60.546 50.000 6.13 0.00 0.00 2.45
361 574 1.269102 CCCTACTTGGACTACATCGCG 60.269 57.143 0.00 0.00 38.35 5.87
365 578 2.092914 GCTTGCCCTACTTGGACTACAT 60.093 50.000 0.00 0.00 38.35 2.29
377 590 1.447140 CACTAACGCGCTTGCCCTA 60.447 57.895 5.73 0.00 34.11 3.53
439 652 1.924524 CTTTCGACGCCGTCATTGTAT 59.075 47.619 18.40 0.00 37.05 2.29
444 657 0.242825 TTCTCTTTCGACGCCGTCAT 59.757 50.000 18.40 0.00 37.05 3.06
445 658 0.386858 CTTCTCTTTCGACGCCGTCA 60.387 55.000 18.40 1.54 37.05 4.35
447 660 0.313043 TTCTTCTCTTTCGACGCCGT 59.687 50.000 0.00 0.00 37.05 5.68
487 700 3.467803 CGGTCCACTTTTCTTTCACTCT 58.532 45.455 0.00 0.00 0.00 3.24
508 721 2.952310 GGCTGACTCAAATACCCATTCC 59.048 50.000 0.00 0.00 0.00 3.01
525 738 2.303022 AGTATATTGACATCCCCGGCTG 59.697 50.000 0.00 0.00 0.00 4.85
574 787 4.558178 TCCGCGAACAGTGATAAACTTTA 58.442 39.130 8.23 0.00 36.83 1.85
581 794 2.951457 TCAATCCGCGAACAGTGATA 57.049 45.000 8.23 0.00 0.00 2.15
594 807 0.250081 GGAGCGGTGGAGATCAATCC 60.250 60.000 0.00 0.00 40.03 3.01
597 810 1.617018 CCTGGAGCGGTGGAGATCAA 61.617 60.000 0.00 0.00 0.00 2.57
616 829 3.460857 AATCAGACAGCCTATTCGTCC 57.539 47.619 0.00 0.00 0.00 4.79
647 860 2.091541 GTCATCTCGGGCATTTCCAAA 58.908 47.619 0.00 0.00 36.21 3.28
699 912 3.181510 GGAATTTCACCGGAATCAAGTCG 60.182 47.826 9.46 0.00 31.93 4.18
702 915 2.097466 CGGGAATTTCACCGGAATCAAG 59.903 50.000 9.46 0.00 46.08 3.02
795 1008 4.409218 CCGTGCACACATGGCAGC 62.409 66.667 18.64 0.00 45.83 5.25
1022 1239 3.265737 TGCCTGTAAAGATGGCTAAAGGA 59.734 43.478 0.00 0.00 46.23 3.36
1056 1273 0.251077 AGAGTGGCAGGAAAAGGCTG 60.251 55.000 0.00 0.00 0.00 4.85
1070 1287 4.502962 GAATGTGGAGAAGGAGAAGAGTG 58.497 47.826 0.00 0.00 0.00 3.51
1075 1292 2.028112 CACGGAATGTGGAGAAGGAGAA 60.028 50.000 0.00 0.00 45.21 2.87
1111 1328 1.275291 TCGAGAGCCGGAATTTCAAGT 59.725 47.619 5.05 0.00 39.14 3.16
1137 1354 3.470888 CCACCCCTCGCGGATCTT 61.471 66.667 6.13 0.00 0.00 2.40
1178 1395 0.611896 CGGGGCAGAGTGGGATTTTT 60.612 55.000 0.00 0.00 0.00 1.94
1194 1412 2.125106 GGTAAGTGGAGCAGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
1216 1434 1.926108 AAGTGTCTCCGCTACTCCTT 58.074 50.000 0.00 0.00 0.00 3.36
1282 1500 0.250684 TGCTGAAATCTTGGGCACGA 60.251 50.000 0.00 0.00 0.00 4.35
1315 1533 6.264067 AGGCAAAGATTCCAACTTCTATATGC 59.736 38.462 0.00 0.00 0.00 3.14
1316 1534 7.814264 AGGCAAAGATTCCAACTTCTATATG 57.186 36.000 0.00 0.00 0.00 1.78
1351 1571 1.446966 GCAGAGCAGAACGGGAGAC 60.447 63.158 0.00 0.00 0.00 3.36
1352 1572 1.599606 GAGCAGAGCAGAACGGGAGA 61.600 60.000 0.00 0.00 0.00 3.71
1354 1574 1.188219 AAGAGCAGAGCAGAACGGGA 61.188 55.000 0.00 0.00 0.00 5.14
1355 1575 0.532573 TAAGAGCAGAGCAGAACGGG 59.467 55.000 0.00 0.00 0.00 5.28
1358 1578 3.056891 AGACAGTAAGAGCAGAGCAGAAC 60.057 47.826 0.00 0.00 0.00 3.01
1359 1579 3.161067 AGACAGTAAGAGCAGAGCAGAA 58.839 45.455 0.00 0.00 0.00 3.02
1361 1581 3.591196 AAGACAGTAAGAGCAGAGCAG 57.409 47.619 0.00 0.00 0.00 4.24
1362 1582 4.342862 AAAAGACAGTAAGAGCAGAGCA 57.657 40.909 0.00 0.00 0.00 4.26
1363 1583 5.474825 AGTAAAAGACAGTAAGAGCAGAGC 58.525 41.667 0.00 0.00 0.00 4.09
1364 1584 7.030768 GGTAGTAAAAGACAGTAAGAGCAGAG 58.969 42.308 0.00 0.00 0.00 3.35
1559 1788 2.430332 ACTTGAACCAACACAACCATGG 59.570 45.455 11.19 11.19 40.16 3.66
1589 1818 2.154854 AGACACACAGATGGTCAACG 57.845 50.000 0.00 0.00 34.04 4.10
1600 1833 3.070878 TGAAGCACCAAGATAGACACACA 59.929 43.478 0.00 0.00 0.00 3.72
1601 1834 3.664107 TGAAGCACCAAGATAGACACAC 58.336 45.455 0.00 0.00 0.00 3.82
1635 1868 1.072331 TGGGTGCTCTTCTCTGAAACC 59.928 52.381 0.00 0.00 0.00 3.27
1678 1911 3.130340 TGCGCTGAAAACCTTCTTTTCTT 59.870 39.130 9.73 0.00 38.75 2.52
1680 1913 3.045688 CTGCGCTGAAAACCTTCTTTTC 58.954 45.455 9.73 0.00 38.51 2.29
1711 1944 2.949451 ACAGATCAGGCTGACTTACG 57.051 50.000 21.37 9.34 39.20 3.18
1779 2022 6.973843 TGATTTGACATCTTCACAGGAAAAG 58.026 36.000 0.00 0.00 32.26 2.27
1784 2027 5.575606 GCAAATGATTTGACATCTTCACAGG 59.424 40.000 21.14 0.00 43.26 4.00
1785 2028 6.153756 TGCAAATGATTTGACATCTTCACAG 58.846 36.000 21.14 0.00 43.26 3.66
1825 2073 3.795623 TCTAAATTCGAACGGAGGGAG 57.204 47.619 0.00 0.00 0.00 4.30
1827 2075 3.802685 GTCATCTAAATTCGAACGGAGGG 59.197 47.826 0.00 0.00 0.00 4.30
1828 2076 4.683832 AGTCATCTAAATTCGAACGGAGG 58.316 43.478 0.00 0.00 0.00 4.30
1829 2077 5.500931 GCAAGTCATCTAAATTCGAACGGAG 60.501 44.000 0.00 0.00 0.00 4.63
1832 2080 5.203358 TGCAAGTCATCTAAATTCGAACG 57.797 39.130 0.00 0.00 0.00 3.95
1833 2081 7.538678 ACAAATGCAAGTCATCTAAATTCGAAC 59.461 33.333 0.00 0.00 33.40 3.95
1834 2082 7.592938 ACAAATGCAAGTCATCTAAATTCGAA 58.407 30.769 0.00 0.00 33.40 3.71
1835 2083 7.144722 ACAAATGCAAGTCATCTAAATTCGA 57.855 32.000 0.00 0.00 33.40 3.71
1836 2084 6.470235 GGACAAATGCAAGTCATCTAAATTCG 59.530 38.462 16.05 0.00 36.50 3.34
1837 2085 7.274250 GTGGACAAATGCAAGTCATCTAAATTC 59.726 37.037 16.05 0.78 36.50 2.17
1840 2088 5.534278 TGTGGACAAATGCAAGTCATCTAAA 59.466 36.000 16.05 0.00 36.50 1.85
1844 2092 3.921119 TGTGGACAAATGCAAGTCATC 57.079 42.857 16.05 10.08 36.50 2.92
1845 2093 4.561938 CCAATGTGGACAAATGCAAGTCAT 60.562 41.667 16.05 3.10 40.96 3.06
1846 2094 3.243805 CCAATGTGGACAAATGCAAGTCA 60.244 43.478 16.05 1.19 40.96 3.41
1847 2095 3.319755 CCAATGTGGACAAATGCAAGTC 58.680 45.455 8.35 8.35 40.96 3.01
1848 2096 2.037511 CCCAATGTGGACAAATGCAAGT 59.962 45.455 0.00 0.00 40.96 3.16
1849 2097 2.299582 TCCCAATGTGGACAAATGCAAG 59.700 45.455 0.00 0.00 40.96 4.01
1851 2099 2.006805 TCCCAATGTGGACAAATGCA 57.993 45.000 0.00 0.00 40.96 3.96
1852 2100 2.896168 CATCCCAATGTGGACAAATGC 58.104 47.619 0.00 0.00 40.96 3.56
1853 2101 2.234168 TGCATCCCAATGTGGACAAATG 59.766 45.455 0.00 0.00 40.96 2.32
1854 2102 2.538222 TGCATCCCAATGTGGACAAAT 58.462 42.857 0.00 0.00 40.96 2.32
1856 2104 2.101783 GATGCATCCCAATGTGGACAA 58.898 47.619 16.23 0.00 40.96 3.18
1857 2105 1.285667 AGATGCATCCCAATGTGGACA 59.714 47.619 23.06 0.00 40.96 4.02
1858 2106 2.062971 AGATGCATCCCAATGTGGAC 57.937 50.000 23.06 0.00 40.96 4.02
1860 2108 4.914983 AGTATAGATGCATCCCAATGTGG 58.085 43.478 23.06 0.00 37.25 4.17
1861 2109 5.766670 ACAAGTATAGATGCATCCCAATGTG 59.233 40.000 23.06 16.18 35.18 3.21
1862 2110 5.945310 ACAAGTATAGATGCATCCCAATGT 58.055 37.500 23.06 16.55 35.18 2.71
1863 2111 9.322773 CTATACAAGTATAGATGCATCCCAATG 57.677 37.037 23.06 15.97 44.80 2.82
1864 2112 9.051259 ACTATACAAGTATAGATGCATCCCAAT 57.949 33.333 25.97 15.85 44.80 3.16
1865 2113 8.314021 CACTATACAAGTATAGATGCATCCCAA 58.686 37.037 25.97 9.64 44.80 4.12
1866 2114 7.454694 ACACTATACAAGTATAGATGCATCCCA 59.545 37.037 25.97 11.90 44.80 4.37
1867 2115 7.841956 ACACTATACAAGTATAGATGCATCCC 58.158 38.462 25.97 8.89 44.80 3.85
1868 2116 8.744652 AGACACTATACAAGTATAGATGCATCC 58.255 37.037 25.97 7.80 44.80 3.51
1871 2119 9.232473 CCTAGACACTATACAAGTATAGATGCA 57.768 37.037 25.97 11.16 44.80 3.96
1872 2120 9.233649 ACCTAGACACTATACAAGTATAGATGC 57.766 37.037 25.97 16.36 44.80 3.91
1878 2126 9.517868 GGATGTACCTAGACACTATACAAGTAT 57.482 37.037 0.00 0.00 34.19 2.12
1879 2127 7.658982 CGGATGTACCTAGACACTATACAAGTA 59.341 40.741 0.00 0.00 34.62 2.24
1880 2128 6.485984 CGGATGTACCTAGACACTATACAAGT 59.514 42.308 0.00 0.00 36.07 3.16
1881 2129 6.485984 ACGGATGTACCTAGACACTATACAAG 59.514 42.308 0.00 0.00 36.31 3.16
1882 2130 6.359804 ACGGATGTACCTAGACACTATACAA 58.640 40.000 0.00 0.00 36.31 2.41
1883 2131 5.933617 ACGGATGTACCTAGACACTATACA 58.066 41.667 0.00 0.00 36.31 2.29
1884 2132 6.874288 AACGGATGTACCTAGACACTATAC 57.126 41.667 0.00 0.00 36.31 1.47
1885 2133 7.285566 AGAAACGGATGTACCTAGACACTATA 58.714 38.462 0.00 0.00 36.31 1.31
1886 2134 6.127793 AGAAACGGATGTACCTAGACACTAT 58.872 40.000 0.00 0.00 36.31 2.12
1887 2135 5.503927 AGAAACGGATGTACCTAGACACTA 58.496 41.667 0.00 0.00 36.31 2.74
1888 2136 4.342359 AGAAACGGATGTACCTAGACACT 58.658 43.478 0.00 0.00 36.31 3.55
1889 2137 4.715527 AGAAACGGATGTACCTAGACAC 57.284 45.455 0.00 0.00 36.31 3.67
1890 2138 5.587844 GTCTAGAAACGGATGTACCTAGACA 59.412 44.000 18.77 0.00 46.36 3.41
1891 2139 5.587844 TGTCTAGAAACGGATGTACCTAGAC 59.412 44.000 17.67 17.67 46.73 2.59
1892 2140 5.748402 TGTCTAGAAACGGATGTACCTAGA 58.252 41.667 0.00 0.00 37.13 2.43
1893 2141 6.446781 TTGTCTAGAAACGGATGTACCTAG 57.553 41.667 0.00 0.00 34.30 3.02
1894 2142 6.839124 TTTGTCTAGAAACGGATGTACCTA 57.161 37.500 0.00 0.00 36.31 3.08
1895 2143 5.733620 TTTGTCTAGAAACGGATGTACCT 57.266 39.130 0.00 0.00 36.31 3.08
1896 2144 6.103997 TCATTTGTCTAGAAACGGATGTACC 58.896 40.000 0.00 0.00 0.00 3.34
1897 2145 7.591006 TTCATTTGTCTAGAAACGGATGTAC 57.409 36.000 0.00 0.00 0.00 2.90
1898 2146 8.092068 TCTTTCATTTGTCTAGAAACGGATGTA 58.908 33.333 0.00 0.00 0.00 2.29
1899 2147 6.934645 TCTTTCATTTGTCTAGAAACGGATGT 59.065 34.615 0.00 0.00 0.00 3.06
1900 2148 7.095229 TGTCTTTCATTTGTCTAGAAACGGATG 60.095 37.037 0.00 0.00 0.00 3.51
1901 2149 6.934645 TGTCTTTCATTTGTCTAGAAACGGAT 59.065 34.615 0.00 0.00 0.00 4.18
1902 2150 6.285224 TGTCTTTCATTTGTCTAGAAACGGA 58.715 36.000 0.00 0.00 0.00 4.69
1903 2151 6.539649 TGTCTTTCATTTGTCTAGAAACGG 57.460 37.500 0.00 0.00 0.00 4.44
1904 2152 8.023050 AGATGTCTTTCATTTGTCTAGAAACG 57.977 34.615 0.00 0.00 36.83 3.60
1911 2159 9.300681 TCCAAATTAGATGTCTTTCATTTGTCT 57.699 29.630 14.43 0.00 36.83 3.41
1912 2160 9.912634 TTCCAAATTAGATGTCTTTCATTTGTC 57.087 29.630 14.43 0.00 36.83 3.18
1913 2161 9.696917 GTTCCAAATTAGATGTCTTTCATTTGT 57.303 29.630 14.43 0.00 36.83 2.83
1914 2162 8.853345 CGTTCCAAATTAGATGTCTTTCATTTG 58.147 33.333 11.39 11.39 36.83 2.32
1915 2163 8.028938 CCGTTCCAAATTAGATGTCTTTCATTT 58.971 33.333 0.00 0.00 36.83 2.32
1916 2164 7.362920 CCCGTTCCAAATTAGATGTCTTTCATT 60.363 37.037 0.00 0.00 36.83 2.57
1917 2165 6.095440 CCCGTTCCAAATTAGATGTCTTTCAT 59.905 38.462 0.00 0.00 39.77 2.57
1918 2166 5.414454 CCCGTTCCAAATTAGATGTCTTTCA 59.586 40.000 0.00 0.00 0.00 2.69
1919 2167 5.163652 CCCCGTTCCAAATTAGATGTCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
1920 2168 4.705023 CCCCGTTCCAAATTAGATGTCTTT 59.295 41.667 0.00 0.00 0.00 2.52
1921 2169 4.270008 CCCCGTTCCAAATTAGATGTCTT 58.730 43.478 0.00 0.00 0.00 3.01
1922 2170 3.371595 CCCCCGTTCCAAATTAGATGTCT 60.372 47.826 0.00 0.00 0.00 3.41
1923 2171 2.949644 CCCCCGTTCCAAATTAGATGTC 59.050 50.000 0.00 0.00 0.00 3.06
1924 2172 3.012934 CCCCCGTTCCAAATTAGATGT 57.987 47.619 0.00 0.00 0.00 3.06
1941 2189 3.163467 ACTAAGCGATACATACTCCCCC 58.837 50.000 0.00 0.00 0.00 5.40
1942 2190 3.825014 TGACTAAGCGATACATACTCCCC 59.175 47.826 0.00 0.00 0.00 4.81
1943 2191 5.183331 TCATGACTAAGCGATACATACTCCC 59.817 44.000 0.00 0.00 0.00 4.30
1944 2192 6.255596 TCATGACTAAGCGATACATACTCC 57.744 41.667 0.00 0.00 0.00 3.85
1945 2193 9.841880 TTAATCATGACTAAGCGATACATACTC 57.158 33.333 0.00 0.00 0.00 2.59
1949 2197 9.547753 AACTTTAATCATGACTAAGCGATACAT 57.452 29.630 0.00 0.00 0.00 2.29
1950 2198 8.942338 AACTTTAATCATGACTAAGCGATACA 57.058 30.769 0.00 0.00 0.00 2.29
1953 2201 9.250624 GAGTAACTTTAATCATGACTAAGCGAT 57.749 33.333 0.00 0.00 0.00 4.58
1954 2202 8.248253 TGAGTAACTTTAATCATGACTAAGCGA 58.752 33.333 0.00 0.00 33.39 4.93
1955 2203 8.407457 TGAGTAACTTTAATCATGACTAAGCG 57.593 34.615 0.00 0.00 33.39 4.68
1956 2204 9.974750 GTTGAGTAACTTTAATCATGACTAAGC 57.025 33.333 0.00 0.00 37.55 3.09
2040 2293 7.477144 TGTAAATCCATGACGCTACAAATAG 57.523 36.000 0.00 0.00 0.00 1.73
2094 2348 7.117523 GCTGTCCTGCATATTCTCTACTTAATG 59.882 40.741 0.00 0.00 0.00 1.90
2097 2351 5.835819 AGCTGTCCTGCATATTCTCTACTTA 59.164 40.000 0.00 0.00 34.99 2.24
2098 2352 4.653341 AGCTGTCCTGCATATTCTCTACTT 59.347 41.667 0.00 0.00 34.99 2.24
2099 2353 4.222336 AGCTGTCCTGCATATTCTCTACT 58.778 43.478 0.00 0.00 34.99 2.57
2100 2354 4.599047 AGCTGTCCTGCATATTCTCTAC 57.401 45.455 0.00 0.00 34.99 2.59
2189 2450 7.272948 GCATCAAGAAATGCTTAAGAGTGAAAG 59.727 37.037 6.67 0.00 46.81 2.62
2288 2549 9.512588 CCAGATGCAATTTACTCCTAGAAATAT 57.487 33.333 0.00 0.00 0.00 1.28
2296 2557 3.054139 TGCTCCAGATGCAATTTACTCCT 60.054 43.478 0.00 0.00 37.51 3.69
2297 2558 3.282021 TGCTCCAGATGCAATTTACTCC 58.718 45.455 0.00 0.00 37.51 3.85
2434 2698 8.410141 TCGTTAGGAATTTCAATTGACAGTTTT 58.590 29.630 7.89 0.00 0.00 2.43
2510 2774 6.984740 TGTTAAACATTTTCTGCACGATTC 57.015 33.333 0.00 0.00 0.00 2.52
2581 2845 4.407296 AGAAGTTAGGCCCATCTTACTCAG 59.593 45.833 0.00 0.00 0.00 3.35
2627 2891 5.691754 CAGAGTATTTTGGTTTTCAACTGCC 59.308 40.000 0.00 0.00 34.67 4.85
2692 2956 4.494091 TTTGTGGGGAAAAGATTGCAAA 57.506 36.364 1.71 0.00 0.00 3.68
2695 2959 7.503521 TTTTATTTTGTGGGGAAAAGATTGC 57.496 32.000 0.00 0.00 0.00 3.56
2730 2999 4.932146 ACCGAAAGATTCAAAAAGTGTGG 58.068 39.130 0.00 0.00 0.00 4.17
2761 3030 9.952341 GCCACAATAAATTTTTCGATAAAGAAC 57.048 29.630 7.13 0.00 0.00 3.01
2762 3031 9.145865 GGCCACAATAAATTTTTCGATAAAGAA 57.854 29.630 0.00 0.00 0.00 2.52
2764 3033 7.011016 GGGGCCACAATAAATTTTTCGATAAAG 59.989 37.037 4.39 0.00 0.00 1.85
2767 3036 5.659079 AGGGGCCACAATAAATTTTTCGATA 59.341 36.000 8.31 0.00 0.00 2.92
2768 3037 4.469586 AGGGGCCACAATAAATTTTTCGAT 59.530 37.500 8.31 0.00 0.00 3.59
2769 3038 3.835395 AGGGGCCACAATAAATTTTTCGA 59.165 39.130 8.31 0.00 0.00 3.71
2770 3039 4.200838 AGGGGCCACAATAAATTTTTCG 57.799 40.909 8.31 0.00 0.00 3.46
2771 3040 5.555966 TCAAGGGGCCACAATAAATTTTTC 58.444 37.500 8.31 0.00 0.00 2.29
2772 3041 5.574970 TCAAGGGGCCACAATAAATTTTT 57.425 34.783 8.31 0.00 0.00 1.94
2774 3043 5.574970 TTTCAAGGGGCCACAATAAATTT 57.425 34.783 8.31 0.00 0.00 1.82
2775 3044 5.574970 TTTTCAAGGGGCCACAATAAATT 57.425 34.783 8.31 0.00 0.00 1.82
2779 3048 4.678256 TGTATTTTCAAGGGGCCACAATA 58.322 39.130 8.31 0.00 0.00 1.90
2780 3049 3.515562 TGTATTTTCAAGGGGCCACAAT 58.484 40.909 8.31 0.00 0.00 2.71
2781 3050 2.964209 TGTATTTTCAAGGGGCCACAA 58.036 42.857 8.31 0.00 0.00 3.33
2784 3053 1.830477 GCATGTATTTTCAAGGGGCCA 59.170 47.619 4.39 0.00 0.00 5.36
2785 3054 2.101415 GAGCATGTATTTTCAAGGGGCC 59.899 50.000 0.00 0.00 0.00 5.80
2787 3056 5.603170 AATGAGCATGTATTTTCAAGGGG 57.397 39.130 0.00 0.00 0.00 4.79
2788 3057 7.529880 GAAAATGAGCATGTATTTTCAAGGG 57.470 36.000 24.19 0.00 45.65 3.95
2851 3242 3.058708 CCTTGTACAACAGCTGTCATGTG 60.059 47.826 27.02 20.74 39.64 3.21
2864 3255 2.910319 AGGCTACACATCCCTTGTACAA 59.090 45.455 8.28 8.28 36.57 2.41
2882 3273 6.342111 AGCTTTACTAATGTAAGAGACAGGC 58.658 40.000 0.00 0.00 42.79 4.85
2904 3295 8.749499 CAAGCTTTAACATATCAATGCTTAAGC 58.251 33.333 20.84 20.84 40.88 3.09
2915 3306 5.064707 TCCACGCTTCAAGCTTTAACATATC 59.935 40.000 8.02 0.00 39.60 1.63
3003 3467 8.662781 TCTCTATGGTTCTGCATATAAAACAC 57.337 34.615 0.00 0.00 0.00 3.32
3012 3476 5.395768 GGTGTTACTCTCTATGGTTCTGCAT 60.396 44.000 0.00 0.00 0.00 3.96
3013 3477 4.081642 GGTGTTACTCTCTATGGTTCTGCA 60.082 45.833 0.00 0.00 0.00 4.41
3025 3489 1.267121 TGCCTCAGGGTGTTACTCTC 58.733 55.000 0.00 0.00 34.45 3.20
3026 3490 1.348036 GTTGCCTCAGGGTGTTACTCT 59.652 52.381 0.00 0.00 34.45 3.24
3032 3496 0.178903 TAGGAGTTGCCTCAGGGTGT 60.179 55.000 0.00 0.00 46.97 4.16
3062 3526 2.875094 AGGTGCTGATTCTTGAAGCT 57.125 45.000 0.41 0.00 37.82 3.74
3066 3530 2.909006 AGAGGAAGGTGCTGATTCTTGA 59.091 45.455 0.00 0.00 0.00 3.02
3094 3558 3.760151 TGGCTTTCATGAAACTGATCAGG 59.240 43.478 26.08 7.80 31.76 3.86
3103 3567 1.549203 GGAGCCTGGCTTTCATGAAA 58.451 50.000 24.26 19.45 39.88 2.69
3104 3568 0.323725 GGGAGCCTGGCTTTCATGAA 60.324 55.000 24.26 3.38 39.88 2.57
3109 3573 1.000396 ACATGGGAGCCTGGCTTTC 60.000 57.895 24.26 17.68 39.88 2.62
3118 3582 1.598701 GGTGGCAAAGACATGGGAGC 61.599 60.000 0.00 0.00 0.00 4.70
3131 3595 0.391793 TTGCGAATACGATGGTGGCA 60.392 50.000 0.00 0.00 42.66 4.92
3135 3599 1.134818 TCAGCTTGCGAATACGATGGT 60.135 47.619 0.00 0.00 42.66 3.55
3142 3606 2.095969 CGTTGGTTTCAGCTTGCGAATA 60.096 45.455 0.00 0.00 0.00 1.75
3179 3643 1.000827 CTGCGTAGATAGCCCAGTGAG 60.001 57.143 0.00 0.00 0.00 3.51
3199 3663 0.604780 AGCACTCCACTGATGCACAC 60.605 55.000 0.00 0.00 41.97 3.82
3205 3669 1.001641 GGCCAAGCACTCCACTGAT 60.002 57.895 0.00 0.00 0.00 2.90
3215 3679 2.722094 CTATAACCACAAGGCCAAGCA 58.278 47.619 5.01 0.00 39.06 3.91
3330 3794 2.971901 TAGGAGACTGACCTGTCACA 57.028 50.000 9.21 0.00 43.88 3.58
3637 4101 6.589139 ACTGTTGTAGTTTCGCCTATTACTTC 59.411 38.462 0.00 0.00 35.67 3.01
3638 4102 6.367969 CACTGTTGTAGTTTCGCCTATTACTT 59.632 38.462 0.00 0.00 37.60 2.24
3639 4103 5.867716 CACTGTTGTAGTTTCGCCTATTACT 59.132 40.000 0.00 0.00 37.60 2.24
3640 4104 5.445540 GCACTGTTGTAGTTTCGCCTATTAC 60.446 44.000 0.00 0.00 37.60 1.89
3641 4105 4.628333 GCACTGTTGTAGTTTCGCCTATTA 59.372 41.667 0.00 0.00 37.60 0.98
3642 4106 3.435671 GCACTGTTGTAGTTTCGCCTATT 59.564 43.478 0.00 0.00 37.60 1.73
3645 4109 1.202651 AGCACTGTTGTAGTTTCGCCT 60.203 47.619 0.00 0.00 37.60 5.52
3660 4124 4.934602 GCTAGTTGAGAAAATCTGAGCACT 59.065 41.667 0.00 0.00 0.00 4.40
3668 4132 6.020520 GCAGTACTACGCTAGTTGAGAAAATC 60.021 42.308 0.00 0.00 40.14 2.17
3669 4133 5.805994 GCAGTACTACGCTAGTTGAGAAAAT 59.194 40.000 0.00 0.00 40.14 1.82
3672 4136 4.008330 AGCAGTACTACGCTAGTTGAGAA 58.992 43.478 5.94 0.00 40.14 2.87
3674 4138 3.623960 AGAGCAGTACTACGCTAGTTGAG 59.376 47.826 7.64 0.00 38.99 3.02
3681 4145 2.506444 GGGATAGAGCAGTACTACGCT 58.494 52.381 7.40 7.40 42.42 5.07
3682 4146 1.540707 GGGGATAGAGCAGTACTACGC 59.459 57.143 0.00 0.00 0.00 4.42
3683 4147 1.805345 CGGGGATAGAGCAGTACTACG 59.195 57.143 0.00 0.00 0.00 3.51
3686 4150 2.032620 CAACGGGGATAGAGCAGTACT 58.967 52.381 0.00 0.00 0.00 2.73
3694 4158 0.535335 GCACAGACAACGGGGATAGA 59.465 55.000 0.00 0.00 0.00 1.98
3695 4159 0.462047 GGCACAGACAACGGGGATAG 60.462 60.000 0.00 0.00 0.00 2.08
3699 4163 2.669569 CAGGCACAGACAACGGGG 60.670 66.667 0.00 0.00 0.00 5.73
3700 4164 1.961277 GTCAGGCACAGACAACGGG 60.961 63.158 0.00 0.00 44.57 5.28
3713 4200 3.071602 TGAAAGAGGAAGAGTTGGTCAGG 59.928 47.826 0.00 0.00 0.00 3.86
3754 4241 3.882888 TCATGAAGTTCTTGTGGTTCACC 59.117 43.478 16.01 0.00 31.94 4.02
3763 4250 6.246420 CCAAGTAGGTTCATGAAGTTCTTG 57.754 41.667 22.11 22.11 0.00 3.02
3804 4291 1.473965 CCATCATCCTGGTGAACGGAG 60.474 57.143 0.00 0.00 27.35 4.63
3894 4389 5.933617 AGCAAGAACAGCATATGGAAGATA 58.066 37.500 4.56 0.00 0.00 1.98
3896 4391 4.226427 AGCAAGAACAGCATATGGAAGA 57.774 40.909 4.56 0.00 0.00 2.87
3914 4417 3.425659 TGAGAGAGAAGTAGCAGAAGCA 58.574 45.455 0.00 0.00 45.49 3.91
3923 4426 5.475220 CCTCACTGTTTCTGAGAGAGAAGTA 59.525 44.000 0.00 0.00 41.86 2.24
3977 4480 1.078567 CAGGTGCTCTGCTTCCCTC 60.079 63.158 0.00 0.00 36.60 4.30
4451 4954 2.859273 CTTTCATCAGCCCCGCGACT 62.859 60.000 8.23 0.00 0.00 4.18
4550 5053 1.838112 TGTCATTTCAGGTGGATGCC 58.162 50.000 0.00 0.00 0.00 4.40
4599 5102 7.498070 AACGCAAAATCTAGTAAGTACGTAC 57.502 36.000 18.10 18.10 0.00 3.67
4600 5103 8.519492 AAAACGCAAAATCTAGTAAGTACGTA 57.481 30.769 0.00 0.00 0.00 3.57
4601 5104 7.412137 AAAACGCAAAATCTAGTAAGTACGT 57.588 32.000 0.00 0.00 0.00 3.57
4602 5105 8.642020 ACTAAAACGCAAAATCTAGTAAGTACG 58.358 33.333 0.00 0.00 0.00 3.67
4605 5108 9.874215 GAAACTAAAACGCAAAATCTAGTAAGT 57.126 29.630 0.00 0.00 0.00 2.24
4609 5112 8.837389 AGAAGAAACTAAAACGCAAAATCTAGT 58.163 29.630 0.00 0.00 0.00 2.57
4610 5113 9.665264 AAGAAGAAACTAAAACGCAAAATCTAG 57.335 29.630 0.00 0.00 0.00 2.43
4611 5114 9.659830 GAAGAAGAAACTAAAACGCAAAATCTA 57.340 29.630 0.00 0.00 0.00 1.98
4662 5168 1.351076 AATTGGGGCCAAAAGGAGTG 58.649 50.000 4.39 0.00 39.55 3.51
4707 5215 8.522830 CCTTTCAACTTTAAGAAATATGCAGGA 58.477 33.333 0.00 0.00 33.69 3.86
4760 5268 8.407064 TCAACACAATTTTAACAAATACTCCGT 58.593 29.630 0.00 0.00 31.89 4.69
4793 5437 9.204570 CACATAAGTATAATTGTAGCCTGGTAC 57.795 37.037 0.00 0.00 0.00 3.34
4794 5438 9.150028 TCACATAAGTATAATTGTAGCCTGGTA 57.850 33.333 0.00 0.00 0.00 3.25
4795 5439 8.029782 TCACATAAGTATAATTGTAGCCTGGT 57.970 34.615 0.00 0.00 0.00 4.00
4796 5440 9.507329 AATCACATAAGTATAATTGTAGCCTGG 57.493 33.333 0.00 0.00 0.00 4.45
4808 5452 9.387397 TCCCATCTACCAAATCACATAAGTATA 57.613 33.333 0.00 0.00 0.00 1.47
4809 5453 8.275187 TCCCATCTACCAAATCACATAAGTAT 57.725 34.615 0.00 0.00 0.00 2.12
4810 5454 7.684317 TCCCATCTACCAAATCACATAAGTA 57.316 36.000 0.00 0.00 0.00 2.24
4811 5455 6.575244 TCCCATCTACCAAATCACATAAGT 57.425 37.500 0.00 0.00 0.00 2.24
4812 5456 6.488006 CCTTCCCATCTACCAAATCACATAAG 59.512 42.308 0.00 0.00 0.00 1.73
4813 5457 6.069088 ACCTTCCCATCTACCAAATCACATAA 60.069 38.462 0.00 0.00 0.00 1.90
4814 5458 5.431731 ACCTTCCCATCTACCAAATCACATA 59.568 40.000 0.00 0.00 0.00 2.29
4815 5459 4.230502 ACCTTCCCATCTACCAAATCACAT 59.769 41.667 0.00 0.00 0.00 3.21
4816 5460 3.591527 ACCTTCCCATCTACCAAATCACA 59.408 43.478 0.00 0.00 0.00 3.58
4817 5461 3.947834 CACCTTCCCATCTACCAAATCAC 59.052 47.826 0.00 0.00 0.00 3.06
4818 5462 3.849574 TCACCTTCCCATCTACCAAATCA 59.150 43.478 0.00 0.00 0.00 2.57
4819 5463 4.455606 CTCACCTTCCCATCTACCAAATC 58.544 47.826 0.00 0.00 0.00 2.17
4834 5478 0.035439 CATGGTTACGGGCTCACCTT 60.035 55.000 0.00 0.00 36.97 3.50
4853 5497 1.959282 CTTCATGGCTAATCCCAAGGC 59.041 52.381 0.00 0.00 38.61 4.35
4857 5501 4.166725 AGTTCATCTTCATGGCTAATCCCA 59.833 41.667 0.00 0.00 39.65 4.37
4858 5502 4.723309 AGTTCATCTTCATGGCTAATCCC 58.277 43.478 0.00 0.00 0.00 3.85
4880 5524 5.219226 ACACGTGATGTTTTGTTAACGAA 57.781 34.783 25.01 4.04 38.98 3.85
4889 5533 3.194005 AGACAGGACACGTGATGTTTT 57.806 42.857 25.01 12.50 43.56 2.43
4897 5541 3.799232 GCAGAAAAGTAGACAGGACACGT 60.799 47.826 0.00 0.00 0.00 4.49
4899 5543 3.728845 TGCAGAAAAGTAGACAGGACAC 58.271 45.455 0.00 0.00 0.00 3.67
4900 5544 4.415881 TTGCAGAAAAGTAGACAGGACA 57.584 40.909 0.00 0.00 0.00 4.02
4925 5569 7.462571 AATACGGTTAGAAAAGCCTGAATTT 57.537 32.000 0.00 0.00 0.00 1.82
4927 5571 6.625081 GCAAATACGGTTAGAAAAGCCTGAAT 60.625 38.462 0.00 0.00 0.00 2.57
4928 5572 5.335348 GCAAATACGGTTAGAAAAGCCTGAA 60.335 40.000 0.00 0.00 0.00 3.02
4930 5574 4.083003 TGCAAATACGGTTAGAAAAGCCTG 60.083 41.667 0.00 0.00 0.00 4.85
4931 5575 4.076394 TGCAAATACGGTTAGAAAAGCCT 58.924 39.130 0.00 0.00 0.00 4.58
4933 5577 6.806739 AGAAATGCAAATACGGTTAGAAAAGC 59.193 34.615 0.00 0.00 0.00 3.51
4964 5611 5.285401 TGGTTTCCTAGGGATACATGAGAA 58.715 41.667 9.46 0.00 35.79 2.87
5043 5690 9.869757 TGCGAATAGTATGCTACATGTATTAAT 57.130 29.630 5.91 3.48 0.00 1.40
5044 5691 9.699703 TTGCGAATAGTATGCTACATGTATTAA 57.300 29.630 5.91 0.00 0.00 1.40
5045 5692 9.869757 ATTGCGAATAGTATGCTACATGTATTA 57.130 29.630 5.91 0.00 0.00 0.98
5046 5693 8.777865 ATTGCGAATAGTATGCTACATGTATT 57.222 30.769 5.91 0.00 0.00 1.89
5047 5694 9.869757 TTATTGCGAATAGTATGCTACATGTAT 57.130 29.630 5.91 0.00 0.00 2.29
5048 5695 9.699703 TTTATTGCGAATAGTATGCTACATGTA 57.300 29.630 5.25 5.25 0.00 2.29
5049 5696 8.601845 TTTATTGCGAATAGTATGCTACATGT 57.398 30.769 2.69 2.69 0.00 3.21
5099 5746 5.891551 TGGAGCACTGTCTATGTATTCTACA 59.108 40.000 0.00 0.00 43.80 2.74
5100 5747 6.392625 TGGAGCACTGTCTATGTATTCTAC 57.607 41.667 0.00 0.00 0.00 2.59
5101 5748 8.885693 ATATGGAGCACTGTCTATGTATTCTA 57.114 34.615 0.00 0.00 0.00 2.10
5102 5749 7.789202 ATATGGAGCACTGTCTATGTATTCT 57.211 36.000 0.00 0.00 0.00 2.40
5103 5750 7.547370 GGAATATGGAGCACTGTCTATGTATTC 59.453 40.741 0.00 0.00 0.00 1.75
5104 5751 7.016563 TGGAATATGGAGCACTGTCTATGTATT 59.983 37.037 0.00 0.00 0.00 1.89
5105 5752 6.498303 TGGAATATGGAGCACTGTCTATGTAT 59.502 38.462 0.00 0.00 0.00 2.29
5106 5753 5.838521 TGGAATATGGAGCACTGTCTATGTA 59.161 40.000 0.00 0.00 0.00 2.29
5107 5754 4.655649 TGGAATATGGAGCACTGTCTATGT 59.344 41.667 0.00 0.00 0.00 2.29
5108 5755 4.993584 GTGGAATATGGAGCACTGTCTATG 59.006 45.833 0.00 0.00 0.00 2.23
5149 5796 3.845178 AGCGGGCTAATAAAACTTTTGC 58.155 40.909 0.00 0.00 0.00 3.68
5194 5844 6.830114 ACTCAGCGATGTAATAACTTAAGC 57.170 37.500 0.00 0.00 0.00 3.09
5210 5860 3.332761 TTGCAAACTTTGTACTCAGCG 57.667 42.857 0.00 0.00 0.00 5.18
5246 5896 8.923270 TGATAGTTTTGTTCTTTCCCTCATTTT 58.077 29.630 0.00 0.00 0.00 1.82
5252 5902 7.898014 AGTTTGATAGTTTTGTTCTTTCCCT 57.102 32.000 0.00 0.00 0.00 4.20
5253 5903 8.847196 AGTAGTTTGATAGTTTTGTTCTTTCCC 58.153 33.333 0.00 0.00 0.00 3.97
5254 5904 9.880064 GAGTAGTTTGATAGTTTTGTTCTTTCC 57.120 33.333 0.00 0.00 0.00 3.13
5255 5905 9.582223 CGAGTAGTTTGATAGTTTTGTTCTTTC 57.418 33.333 0.00 0.00 0.00 2.62
5256 5906 9.321562 TCGAGTAGTTTGATAGTTTTGTTCTTT 57.678 29.630 0.00 0.00 0.00 2.52
5257 5907 8.882415 TCGAGTAGTTTGATAGTTTTGTTCTT 57.118 30.769 0.00 0.00 0.00 2.52
5308 5958 8.870116 TGCTAGTGATAGGCTTCTCAATATTTA 58.130 33.333 0.00 0.00 0.00 1.40
5311 5961 6.268617 TGTGCTAGTGATAGGCTTCTCAATAT 59.731 38.462 0.00 0.00 0.00 1.28
5397 6047 7.837863 TCCTTACGAGTTTTCTCTACATTCAT 58.162 34.615 0.00 0.00 44.16 2.57
5429 6079 9.958180 TCTATCCTATGTGTGATTTTTGAAGAA 57.042 29.630 0.00 0.00 0.00 2.52
5437 6094 6.239217 TGCTGTCTATCCTATGTGTGATTT 57.761 37.500 0.00 0.00 0.00 2.17
5493 6150 4.885907 CGTGAATGGAGGGAGTACTAGTTA 59.114 45.833 0.00 0.00 0.00 2.24
5502 6159 5.012148 ACCTTATATTCGTGAATGGAGGGAG 59.988 44.000 17.41 5.29 33.55 4.30
5510 6167 9.886132 AACTTAGAACACCTTATATTCGTGAAT 57.114 29.630 0.22 0.22 34.93 2.57
5552 6209 9.947897 CAAACACACTAAAACGTGTCTATATAC 57.052 33.333 0.00 0.00 45.74 1.47
5564 6221 7.631915 AACAAGTGAACAAACACACTAAAAC 57.368 32.000 0.00 0.00 44.94 2.43
5568 6225 6.205853 ACTCAAACAAGTGAACAAACACACTA 59.794 34.615 0.00 0.00 44.94 2.74
5570 6227 5.219633 ACTCAAACAAGTGAACAAACACAC 58.780 37.500 0.00 0.00 42.45 3.82
5619 6276 7.867909 TCCGTGCACAAATATAAAATGTTTTGA 59.132 29.630 18.64 0.00 34.13 2.69
5628 6285 4.196193 CTCCCTCCGTGCACAAATATAAA 58.804 43.478 18.64 0.00 0.00 1.40
5640 6297 5.240844 AGAAAAATTTGTTACTCCCTCCGTG 59.759 40.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.