Multiple sequence alignment - TraesCS5A01G148900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G148900 chr5A 100.000 2409 0 0 1 2409 326648935 326651343 0.000000e+00 4449.0
1 TraesCS5A01G148900 chr5D 89.814 2150 130 29 306 2408 230043883 230041776 0.000000e+00 2675.0
2 TraesCS5A01G148900 chr5D 88.768 276 29 2 1 276 230044150 230043877 1.070000e-88 337.0
3 TraesCS5A01G148900 chr5D 86.792 212 25 3 2198 2409 490162877 490162669 1.440000e-57 233.0
4 TraesCS5A01G148900 chr5D 82.470 251 35 7 2166 2409 472314916 472315164 6.750000e-51 211.0
5 TraesCS5A01G148900 chr5B 92.214 1310 53 22 556 1850 275503774 275505049 0.000000e+00 1808.0
6 TraesCS5A01G148900 chr5B 88.225 569 41 9 1 553 275503088 275503646 0.000000e+00 656.0
7 TraesCS5A01G148900 chr5B 86.513 519 38 12 1839 2327 275505297 275505813 2.110000e-150 542.0
8 TraesCS5A01G148900 chr5B 90.580 138 13 0 2272 2409 275505811 275505948 1.470000e-42 183.0
9 TraesCS5A01G148900 chr1B 85.427 199 27 2 2156 2353 439425774 439425577 3.140000e-49 206.0
10 TraesCS5A01G148900 chr1B 100.000 28 0 0 2116 2143 675010965 675010938 4.000000e-03 52.8
11 TraesCS5A01G148900 chr7A 81.712 257 30 6 2169 2409 487475872 487475617 5.250000e-47 198.0
12 TraesCS5A01G148900 chr7A 75.502 249 30 13 1062 1309 63780115 63780333 2.550000e-15 93.5
13 TraesCS5A01G148900 chr2D 81.395 258 31 7 2168 2409 317599372 317599628 6.800000e-46 195.0
14 TraesCS5A01G148900 chr3D 81.405 242 29 8 2182 2407 515956745 515956504 1.470000e-42 183.0
15 TraesCS5A01G148900 chr7D 87.179 156 20 0 2254 2409 208214526 208214371 6.840000e-41 178.0
16 TraesCS5A01G148900 chr2B 83.333 168 26 2 2193 2359 207616550 207616716 1.150000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G148900 chr5A 326648935 326651343 2408 False 4449.00 4449 100.000 1 2409 1 chr5A.!!$F1 2408
1 TraesCS5A01G148900 chr5D 230041776 230044150 2374 True 1506.00 2675 89.291 1 2408 2 chr5D.!!$R2 2407
2 TraesCS5A01G148900 chr5B 275503088 275505948 2860 False 797.25 1808 89.383 1 2409 4 chr5B.!!$F1 2408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.040058 TCCTGGTGTAGCGGAGGTTA 59.96 55.0 0.0 0.0 40.68 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1747 0.256752 CCACTTGCTGGATGGATGGA 59.743 55.0 0.0 0.0 43.95 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.182744 CCGATGATCGAGGGAGGT 57.817 61.111 17.52 0.00 43.74 3.85
21 22 3.341263 CCGATGATCGAGGGAGGTA 57.659 57.895 17.52 0.00 43.74 3.08
25 26 3.020274 CGATGATCGAGGGAGGTATCAT 58.980 50.000 9.62 0.00 43.74 2.45
40 41 1.506493 ATCATGGATTCGCTCGAAGC 58.494 50.000 11.29 11.29 39.52 3.86
67 68 3.261897 CCTCAGATTTGTAGTCCTGGTGT 59.738 47.826 0.00 0.00 0.00 4.16
76 77 1.982938 GTCCTGGTGTAGCGGAGGT 60.983 63.158 0.00 0.00 44.89 3.85
78 79 0.040058 TCCTGGTGTAGCGGAGGTTA 59.960 55.000 0.00 0.00 40.68 2.85
118 119 2.104859 CAGCCACCATGCTCGAGTG 61.105 63.158 15.13 5.11 40.32 3.51
124 125 2.146342 CACCATGCTCGAGTGTTCTTT 58.854 47.619 15.13 0.00 0.00 2.52
176 177 3.616317 CGATGGAGGTATTGTGTGTGACA 60.616 47.826 0.00 0.00 0.00 3.58
197 198 2.218673 ACTCTCAGATAGGGGGAGTCA 58.781 52.381 0.00 0.00 32.66 3.41
222 223 0.766131 TAGGTTTTGGGAAGACGCCA 59.234 50.000 0.00 0.00 0.00 5.69
285 286 2.209838 ACATGAATGCGACTAGACGG 57.790 50.000 16.03 0.55 0.00 4.79
311 312 0.175760 GGTGATAGCGGCTTCAGTGA 59.824 55.000 8.26 0.00 0.00 3.41
313 314 2.555199 GTGATAGCGGCTTCAGTGATT 58.445 47.619 8.26 0.00 0.00 2.57
350 359 3.032459 GAGAGGGTTTTCGGATAGGACT 58.968 50.000 0.00 0.00 0.00 3.85
365 374 3.477210 AGGACTGAGTTGTTGGAAGTC 57.523 47.619 0.00 0.00 37.20 3.01
430 439 6.051717 CCGACATAGAGGATTTCAAACATCT 58.948 40.000 0.00 0.00 0.00 2.90
431 440 6.018425 CCGACATAGAGGATTTCAAACATCTG 60.018 42.308 0.00 0.00 0.00 2.90
432 441 6.758416 CGACATAGAGGATTTCAAACATCTGA 59.242 38.462 0.00 0.00 0.00 3.27
461 470 0.955428 GTCCGATTTGGTGAGCTGCA 60.955 55.000 1.02 0.00 39.52 4.41
595 737 1.269257 GCAGTGAAAGCTTGTCCAACC 60.269 52.381 0.00 0.00 0.00 3.77
838 990 2.430694 GGGCCACTGGTTTCATTTATCC 59.569 50.000 4.39 0.00 0.00 2.59
847 1000 8.150296 CACTGGTTTCATTTATCCTTTTCCTTT 58.850 33.333 0.00 0.00 0.00 3.11
944 1097 3.282135 TCCAATTCCCCATTCCCAAAA 57.718 42.857 0.00 0.00 0.00 2.44
962 1115 2.094762 AAAAAGTCATCCGGTCCGAG 57.905 50.000 14.39 2.83 0.00 4.63
971 1124 0.611062 TCCGGTCCGAGAATCACTGT 60.611 55.000 14.39 0.00 33.17 3.55
1070 1223 1.870055 GCCACCGTCGGTTAGTCTCA 61.870 60.000 15.97 0.00 31.02 3.27
1072 1225 0.456312 CACCGTCGGTTAGTCTCAGC 60.456 60.000 15.97 0.00 31.02 4.26
1104 1257 1.830408 CTTCCCTCCCGCGATCTCT 60.830 63.158 8.23 0.00 0.00 3.10
1134 1293 4.446385 TGTTCTTGTACGTAGTTGTGATGC 59.554 41.667 0.00 0.00 37.78 3.91
1141 1300 1.269166 GTAGTTGTGATGCGAGACCG 58.731 55.000 0.00 0.00 39.16 4.79
1144 1303 3.950794 TTGTGATGCGAGACCGGGC 62.951 63.158 6.32 0.52 36.06 6.13
1148 1307 2.758327 ATGCGAGACCGGGCACTA 60.758 61.111 11.69 0.00 42.76 2.74
1155 1314 1.743394 GAGACCGGGCACTAATTTTGG 59.257 52.381 11.69 0.00 0.00 3.28
1156 1315 0.172578 GACCGGGCACTAATTTTGGC 59.827 55.000 0.00 5.09 38.79 4.52
1157 1316 0.251608 ACCGGGCACTAATTTTGGCT 60.252 50.000 6.32 0.00 39.45 4.75
1158 1317 0.173255 CCGGGCACTAATTTTGGCTG 59.827 55.000 12.70 12.70 43.80 4.85
1159 1318 0.458370 CGGGCACTAATTTTGGCTGC 60.458 55.000 11.57 0.00 38.88 5.25
1160 1319 0.458370 GGGCACTAATTTTGGCTGCG 60.458 55.000 11.57 0.00 39.45 5.18
1161 1320 0.243636 GGCACTAATTTTGGCTGCGT 59.756 50.000 6.16 0.00 36.62 5.24
1162 1321 1.617740 GCACTAATTTTGGCTGCGTC 58.382 50.000 0.00 0.00 0.00 5.19
1163 1322 1.200020 GCACTAATTTTGGCTGCGTCT 59.800 47.619 0.00 0.00 0.00 4.18
1579 1746 8.304596 CGGGATTATCTTATCTGCTTTGTACTA 58.695 37.037 0.00 0.00 0.00 1.82
1651 1823 1.588583 TGGAGGTGGGGGTAGGATTAT 59.411 52.381 0.00 0.00 0.00 1.28
1652 1824 2.020441 TGGAGGTGGGGGTAGGATTATT 60.020 50.000 0.00 0.00 0.00 1.40
1653 1825 3.212631 TGGAGGTGGGGGTAGGATTATTA 59.787 47.826 0.00 0.00 0.00 0.98
1654 1826 3.844804 GGAGGTGGGGGTAGGATTATTAG 59.155 52.174 0.00 0.00 0.00 1.73
1655 1827 3.844804 GAGGTGGGGGTAGGATTATTAGG 59.155 52.174 0.00 0.00 0.00 2.69
1656 1828 3.213805 AGGTGGGGGTAGGATTATTAGGT 59.786 47.826 0.00 0.00 0.00 3.08
1657 1829 3.985452 GGTGGGGGTAGGATTATTAGGTT 59.015 47.826 0.00 0.00 0.00 3.50
1658 1830 4.042560 GGTGGGGGTAGGATTATTAGGTTC 59.957 50.000 0.00 0.00 0.00 3.62
1659 1831 4.042560 GTGGGGGTAGGATTATTAGGTTCC 59.957 50.000 0.00 0.00 0.00 3.62
1660 1832 3.590630 GGGGGTAGGATTATTAGGTTCCC 59.409 52.174 0.00 0.00 0.00 3.97
1753 1925 8.492782 AGATAGAATTCTGTCTGTTTGGATGAT 58.507 33.333 28.00 5.73 41.88 2.45
1767 1939 7.696755 TGTTTGGATGATGTTGATCGAATAAG 58.303 34.615 0.00 0.00 0.00 1.73
1881 2310 0.394352 ATCCTGGAATCCGTGGTTGC 60.394 55.000 0.00 0.00 0.00 4.17
2142 2579 1.250840 ACCAGCAAATTTCCTCCGGC 61.251 55.000 0.00 0.00 0.00 6.13
2159 2596 3.630148 CATCCGTGCGCGATCCAC 61.630 66.667 23.45 7.93 41.33 4.02
2191 2642 1.076549 GGAGGCATCCAACCAACCA 59.923 57.895 13.69 0.00 45.87 3.67
2196 2647 2.244510 AGGCATCCAACCAACCATATCA 59.755 45.455 0.00 0.00 0.00 2.15
2214 2665 6.753744 CCATATCATGTATATGTCCGTCAGTG 59.246 42.308 16.91 0.00 44.13 3.66
2245 2696 4.860802 TCAAATGTACCCTGATCCACAT 57.139 40.909 0.00 0.00 33.12 3.21
2249 2700 5.708736 AATGTACCCTGATCCACATAACA 57.291 39.130 0.00 0.00 31.55 2.41
2252 2719 1.906574 ACCCTGATCCACATAACACGT 59.093 47.619 0.00 0.00 0.00 4.49
2314 2835 4.009675 TGCTTAGTCTTTACATGCCCAAG 58.990 43.478 0.00 0.00 0.00 3.61
2328 2849 3.037549 TGCCCAAGTCCAAAAGAACATT 58.962 40.909 0.00 0.00 0.00 2.71
2342 2863 2.906389 AGAACATTAGTCTGGCAGTCCA 59.094 45.455 15.27 0.00 40.85 4.02
2366 2887 3.270027 CATTTCTGCCATGTTAGACCGA 58.730 45.455 0.00 0.00 0.00 4.69
2367 2888 3.627395 TTTCTGCCATGTTAGACCGAT 57.373 42.857 0.00 0.00 0.00 4.18
2396 2917 1.267574 AAGCTGCTCCCCGATCAAGA 61.268 55.000 1.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.110011 TCCATGATACCTCCCTCGATCA 59.890 50.000 0.00 0.00 33.09 2.92
20 21 2.610479 GGCTTCGAGCGAATCCATGATA 60.610 50.000 17.62 0.00 43.62 2.15
21 22 1.506493 GCTTCGAGCGAATCCATGAT 58.494 50.000 5.73 0.00 33.28 2.45
25 26 2.186903 GGGCTTCGAGCGAATCCA 59.813 61.111 22.15 0.00 43.62 3.41
49 50 3.119101 CGCTACACCAGGACTACAAATCT 60.119 47.826 0.00 0.00 0.00 2.40
76 77 1.361271 CGGCTACCGCTCGGAATAA 59.639 57.895 15.95 0.00 41.17 1.40
118 119 3.796844 GCAAGAAGACCAAGGCAAAGAAC 60.797 47.826 0.00 0.00 0.00 3.01
124 125 4.500265 GGCAAGAAGACCAAGGCA 57.500 55.556 0.00 0.00 0.00 4.75
176 177 2.587777 TGACTCCCCCTATCTGAGAGTT 59.412 50.000 0.00 0.00 37.90 3.01
197 198 4.770795 CGTCTTCCCAAAACCTATCATCT 58.229 43.478 0.00 0.00 0.00 2.90
222 223 3.749609 CACTTCGGATCTTAAAACCGGTT 59.250 43.478 15.86 15.86 45.61 4.44
270 271 0.930742 CTCGCCGTCTAGTCGCATTC 60.931 60.000 3.70 0.00 0.00 2.67
278 279 1.437772 ATCACCGTCTCGCCGTCTAG 61.438 60.000 0.00 0.00 0.00 2.43
285 286 2.353607 CCGCTATCACCGTCTCGC 60.354 66.667 0.00 0.00 0.00 5.03
311 312 0.326238 TCCGGCTCTAGAACCCCAAT 60.326 55.000 6.60 0.00 0.00 3.16
313 314 1.381327 CTCCGGCTCTAGAACCCCA 60.381 63.158 6.60 0.00 0.00 4.96
339 348 2.496070 CCAACAACTCAGTCCTATCCGA 59.504 50.000 0.00 0.00 0.00 4.55
350 359 0.179234 TGCCGACTTCCAACAACTCA 59.821 50.000 0.00 0.00 0.00 3.41
365 374 1.299468 GGAGCTCATACGTCTGCCG 60.299 63.158 17.19 0.00 44.03 5.69
430 439 3.599343 CAAATCGGACCAGACTGATTCA 58.401 45.455 3.32 0.00 38.27 2.57
431 440 2.939103 CCAAATCGGACCAGACTGATTC 59.061 50.000 3.32 0.00 38.27 2.52
432 441 2.305927 ACCAAATCGGACCAGACTGATT 59.694 45.455 3.32 0.00 38.27 2.57
461 470 7.228507 GGTTCAAAACATTTTTAGGCCTTCAAT 59.771 33.333 12.58 4.03 0.00 2.57
638 787 5.929992 AGTGCGTGATAGCTTTAACAAACTA 59.070 36.000 0.00 0.00 38.13 2.24
687 839 0.997196 CGTGGGACTTAAAGTAGCGC 59.003 55.000 0.00 0.00 0.00 5.92
694 846 2.168936 ACACTGACACGTGGGACTTAAA 59.831 45.455 21.57 0.00 39.19 1.52
838 990 4.625742 TCGATCGTCAGCTAAAAGGAAAAG 59.374 41.667 15.94 0.00 0.00 2.27
847 1000 3.058155 GGCTTCTATCGATCGTCAGCTAA 60.058 47.826 15.94 4.29 0.00 3.09
881 1034 1.429148 GGCGTATTTGTAGCTGCGCT 61.429 55.000 9.73 8.09 44.35 5.92
944 1097 1.263356 TCTCGGACCGGATGACTTTT 58.737 50.000 15.25 0.00 0.00 2.27
956 1109 4.966965 TCTCTTACAGTGATTCTCGGAC 57.033 45.455 0.00 0.00 0.00 4.79
957 1110 6.263392 CCTAATCTCTTACAGTGATTCTCGGA 59.737 42.308 0.00 0.00 38.76 4.55
958 1111 6.263392 TCCTAATCTCTTACAGTGATTCTCGG 59.737 42.308 0.00 5.32 38.76 4.63
959 1112 7.265647 TCCTAATCTCTTACAGTGATTCTCG 57.734 40.000 0.00 0.00 38.76 4.04
960 1113 7.923878 GGTTCCTAATCTCTTACAGTGATTCTC 59.076 40.741 0.00 0.00 38.76 2.87
961 1114 7.621683 AGGTTCCTAATCTCTTACAGTGATTCT 59.378 37.037 0.00 0.00 38.76 2.40
962 1115 7.787028 AGGTTCCTAATCTCTTACAGTGATTC 58.213 38.462 0.00 0.00 38.76 2.52
971 1124 4.643784 GTGGACGAGGTTCCTAATCTCTTA 59.356 45.833 0.00 0.00 36.51 2.10
1063 1216 1.076923 GACCGAGGGGCTGAGACTA 60.077 63.158 0.00 0.00 36.48 2.59
1104 1257 3.503363 ACTACGTACAAGAACACCGATCA 59.497 43.478 0.00 0.00 0.00 2.92
1134 1293 1.396996 CAAAATTAGTGCCCGGTCTCG 59.603 52.381 0.00 0.00 0.00 4.04
1141 1300 0.458370 CGCAGCCAAAATTAGTGCCC 60.458 55.000 0.00 0.00 0.00 5.36
1144 1303 3.559238 AAGACGCAGCCAAAATTAGTG 57.441 42.857 0.00 0.00 0.00 2.74
1148 1307 1.501169 GCAAAGACGCAGCCAAAATT 58.499 45.000 0.00 0.00 0.00 1.82
1155 1314 4.389576 CCACGGCAAAGACGCAGC 62.390 66.667 0.00 0.00 37.73 5.25
1156 1315 2.034879 ATCCACGGCAAAGACGCAG 61.035 57.895 0.00 0.00 37.73 5.18
1157 1316 2.031919 ATCCACGGCAAAGACGCA 59.968 55.556 0.00 0.00 37.73 5.24
1158 1317 2.480555 CATCCACGGCAAAGACGC 59.519 61.111 0.00 0.00 37.73 5.19
1159 1318 2.244436 CTGCATCCACGGCAAAGACG 62.244 60.000 0.00 0.00 41.39 4.18
1160 1319 1.503542 CTGCATCCACGGCAAAGAC 59.496 57.895 0.00 0.00 41.39 3.01
1161 1320 1.675310 CCTGCATCCACGGCAAAGA 60.675 57.895 0.00 0.00 41.39 2.52
1162 1321 2.703798 CCCTGCATCCACGGCAAAG 61.704 63.158 0.00 0.00 41.39 2.77
1163 1322 2.676121 CCCTGCATCCACGGCAAA 60.676 61.111 0.00 0.00 41.39 3.68
1291 1450 0.388907 TCCGTTTGGCTGCGTAGTAC 60.389 55.000 1.53 0.00 34.14 2.73
1300 1459 2.203938 TCCTCCCTCCGTTTGGCT 60.204 61.111 0.00 0.00 34.14 4.75
1410 1569 0.749649 ATCTGAGCGTCTGATCCACC 59.250 55.000 0.00 0.00 30.61 4.61
1411 1570 1.406898 TGATCTGAGCGTCTGATCCAC 59.593 52.381 20.85 7.88 45.52 4.02
1412 1571 1.406898 GTGATCTGAGCGTCTGATCCA 59.593 52.381 20.85 12.60 45.52 3.41
1413 1572 1.599171 CGTGATCTGAGCGTCTGATCC 60.599 57.143 20.85 15.09 45.52 3.36
1423 1582 4.899239 GGCCGGCCGTGATCTGAG 62.899 72.222 33.60 6.93 0.00 3.35
1454 1621 2.032808 TCGTCATCATCATCGTCTCGTC 60.033 50.000 0.00 0.00 0.00 4.20
1579 1746 1.133575 CCACTTGCTGGATGGATGGAT 60.134 52.381 0.00 0.00 43.95 3.41
1580 1747 0.256752 CCACTTGCTGGATGGATGGA 59.743 55.000 0.00 0.00 43.95 3.41
1581 1748 1.389609 GCCACTTGCTGGATGGATGG 61.390 60.000 0.00 0.00 43.95 3.51
1582 1749 1.721664 CGCCACTTGCTGGATGGATG 61.722 60.000 0.00 0.00 43.95 3.51
1634 1801 3.213805 ACCTAATAATCCTACCCCCACCT 59.786 47.826 0.00 0.00 0.00 4.00
1655 1827 4.034410 ACATAGAGAAGAGGGAAGGGAAC 58.966 47.826 0.00 0.00 0.00 3.62
1656 1828 4.016105 AGACATAGAGAAGAGGGAAGGGAA 60.016 45.833 0.00 0.00 0.00 3.97
1657 1829 3.533907 AGACATAGAGAAGAGGGAAGGGA 59.466 47.826 0.00 0.00 0.00 4.20
1658 1830 3.922375 AGACATAGAGAAGAGGGAAGGG 58.078 50.000 0.00 0.00 0.00 3.95
1659 1831 6.310941 TCATAGACATAGAGAAGAGGGAAGG 58.689 44.000 0.00 0.00 0.00 3.46
1660 1832 8.306038 CAATCATAGACATAGAGAAGAGGGAAG 58.694 40.741 0.00 0.00 0.00 3.46
1753 1925 3.181521 CGCTGTTGCTTATTCGATCAACA 60.182 43.478 13.21 13.21 44.23 3.33
1881 2310 5.163099 TGGACCCCTTGAATGGATAATGTAG 60.163 44.000 0.00 0.00 0.00 2.74
1944 2373 5.476091 TCTCTCTCTTTTCTCCACTTTCC 57.524 43.478 0.00 0.00 0.00 3.13
2142 2579 3.630148 GTGGATCGCGCACGGATG 61.630 66.667 8.75 0.00 40.63 3.51
2191 2642 7.703058 TCACTGACGGACATATACATGATAT 57.297 36.000 0.00 0.00 35.96 1.63
2196 2647 6.816136 TGAATTCACTGACGGACATATACAT 58.184 36.000 3.38 0.00 0.00 2.29
2214 2665 9.305925 GATCAGGGTACATTTGAATTTGAATTC 57.694 33.333 9.05 9.05 43.91 2.17
2234 2685 2.193447 CGACGTGTTATGTGGATCAGG 58.807 52.381 0.00 0.00 0.00 3.86
2235 2686 2.159296 TCCGACGTGTTATGTGGATCAG 60.159 50.000 0.00 0.00 0.00 2.90
2245 2696 0.736636 AGATGCGATCCGACGTGTTA 59.263 50.000 0.00 0.00 35.59 2.41
2249 2700 2.722487 GGAGATGCGATCCGACGT 59.278 61.111 0.00 0.00 35.59 4.34
2314 2835 4.518970 TGCCAGACTAATGTTCTTTTGGAC 59.481 41.667 0.00 0.00 0.00 4.02
2342 2863 3.382546 GGTCTAACATGGCAGAAATGCAT 59.617 43.478 0.00 0.00 36.33 3.96
2355 2876 3.646162 TGCTGGGATTATCGGTCTAACAT 59.354 43.478 0.00 0.00 0.00 2.71
2358 2879 3.494398 GCTTGCTGGGATTATCGGTCTAA 60.494 47.826 0.00 0.00 0.00 2.10
2359 2880 2.037251 GCTTGCTGGGATTATCGGTCTA 59.963 50.000 0.00 0.00 0.00 2.59
2360 2881 1.202698 GCTTGCTGGGATTATCGGTCT 60.203 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.