>input_sequence_81259
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--------------------------------ATGGAGAAGATGAGCTCGTCGGTGCAGTCCTGGGCGGACCAGCACAAG
CTCGCCACCGTCGGTTAGTCTCAGCCCCTCGGTCCCCCCTTCCCTCCCGCGATCTCTGATCGGTGTTCTTGTACGTAG--
----TTGTGATGCGAGACCGGGCACTAATTTTGGCTGCGTCTTTGCCGTGGATGCAGGGGCGATGTGGACGACGGCGGTT
GGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAAGGCGGCGGGGTTCACGGTCGCTGCCGCACTCGGCGGAGCGGCGCT
GGCGCACCAGTACTACGCAGCCAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACTTCTACTCGCAGCTGCCGG
CGGCCACCGGCGAGGACGGCCAGGAGAACGAGCGGTGGAGCTACTAG---------------------------------
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>chr5A_1_TraesCS5A01G148900
AACCCGATGATCGAGGGAGGTATCATGGATTCGCTCGAAGCCCCCCCTCAGATTTGTAGTCCTGGTGTAGCGGAGGTTAT
TCCGAGCGGTAGCCGCCGAGCAGCCACCATGCTCGAGTGTTCTTTGCCTTGGTCTTCTTGCCCATTGCGGCGGCCGATGG
AGGTATTGTGTGTGACAACTCTCAGATAGGGGGAGTCAGATGATAGGTTTTGGGAAGACGCCAACCGGTTTTAAGATCCG
AAGTGGGCTTCTCGGGCGGCGCGCCAACATGAATGCGACTAGACGGCGAGACGGTGATAGCGGCTTCAGTGATT------
--GGGGTTCTAGAGCCGGAGAGGGTTTTCGGATAGGACTGAGTTGTTGGAAGTCGGCAGACGTATGAGCTCCTCAAGAGC
TCCCCGATTTTGGGCCGACATAGAGGATTTCAAACATCTGAATCAGTCTGGTCCGATTTGGTGAGCTGCATTGAAGGCCT
AAAAATGTTTTGAACCGTTCATTTCAAACATTTAGGATAATTTGATGAGCTGCG-----GATGTCATATTGGGAAGAGTT
CACAACGGTGTGATACAGG-------------------------------------------------------------
-------------------------------------------------------------------GCACCCTTAGCAG
TGAAAGCTTGTCCAACCTGTCTACAAAAA-------ATGTTTTTTCAGAAAAGAAAAGAAAAAAAATAGTTTGTTAAAGC
TATCACG---CACTCGTGGGACAGACGGTGGTCCCGACGCGCTACTTTAAGTCCCACGTGTCAGTGTGATGGCGAGCAAC
CTGGATAAGAAGGACCTCATAAAACCTCGGGCTACCTCCGAATAGAGAGGCAACCCAACGAAGCAAACCGCGACAGAAAC
TGGTGGCTGGGCCACTGGTTTCATTTATCC-TTTTCCTTTTAGCTGACGATCGATAGAAGCCAGTGGGCGCGCAGCGCAG
CTACAAATACGCCACCAACCTGACCCGCTGATCCCATCCAATTCCCCATTCCCAAAAAAAGTCATCCGGTCCGAGAATCA
CTGTAAGAGATTAGGAACCTCGTCCACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCCTGGGCGGACCAGCACAAG
CTCGCCACCGTCGGTTAGTCTCAGCCCCTCGGTCCCCCCTTCCCTCCCGCGATCTCTGATCGGTGTTCTTGTACGTAG--
----TTGTGATGCGAGACCGGGCACTAATTTTGGCTGCGTCTTTGCCGTGGATGCAGGGGCGATGTGGACGACGGCGGTT
GGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAAGGCGGCGGGGTTCACGGTCGCTGCCGCACTCGGCGGAGCGGCGCT
GGCGCACCAGTACTACGCAGCCAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACTTCTACTCGCAGCTGCCGG
CGGCCACCGGCGAGGACGGCCAGGAGAACGAGCGGTGGAGCTACTAGCGGTGGATCAGACGCTCAGATCACGGCCGGCCG
GCCG--------TGGATCGAGACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTAATTAATGGCCCATGACGT
GGCGCGGCTCATTTGTCCTAATCCATCCAGCGGGGAAGACGGGATTATCTTATCTGCTTTGTACTATCCATCCATCCAGC
AAGTGGCGTTGTTGTCTCCATCATCTAGTAGGTGTGATGGAGGTGGGGGTAGG-----ATTATTAGGTTCCCTTCCCTCT
TCTCTATGTCTATGATTGAAGGAACCAAGAAACCCAGCGATGCCTTGCGGATTATAGTAGATAGAATTCTGTCTGTTTGG
ATGATGTTGATCGAATAAGCAACAGCGAGTCGCCTGAGTTATCCAAGTTTTAAACTTTTAATAGTGTCCGGCACACAGTG
AGAAGCGAGGCCGGCCT---------------------------------------------------------------
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----------------------------------TAGTCATGAGAAAAGAATCCTGGAATCCGTGGTTGCTACATTATCC
ATTCAAGGGGTCCATATGTTAACTGGATCTGGAAGGAAGAATCTTTCCCGAAGGAAAGTGGAGAAAAGAGAGAGAAGCTG
GCATTTTAATTTCAGTTGCACACAACTGATACTCATGACAAATGCAATTGCAAGGTATGGTAATGTCTTTGAGAATCTTT
GGAGTATTTTGCTGCAACATGCAACATAATAAAGC--------ATATAAATTAGGTGTAAAGTTATGGCTACAACGGCAA
CCAGCAAATTTCCTCCGGCATCCGTGCGCGATCCACGCATG--------------CGGATGCGGGAGGCATCCAACCAAC
CATATCATGTATATGTCCGTCAGTGAATTCAAATTCAAATGTACCCTGATCCACATAACA----------------CGTC
GGATCGCATCTCCGATC------------------------------------------------------ACAACCAAA
AAGAGGCAAATATGCTTAGTCTTTACATGCCCAAGTCCAAAAGAACATTAGTCTGGCAGTCCATGCATTTCTGCCATGTT
AGACCGATAATCCCAGCAAGCTGCTCCCCGATCAAGAAGGTGTCGTCGC
>chr5D_1
AACCCGACGATCGAGGGAGGCGTAACAGATTCGCTCGAAG-CCCCTCTTGGATTTGTAGTCCTGGTGCAGTGGAGGCTGT
TCCGTGCGATAGCCGCCGAGCAGCCAC-ATGCTCGAGTCTTCTTCGCCTTGGTCTTCTTGCCCATGGCAGCAGCCAATGG
AGGTATTGTGTGTGACGACTCTTTGATAGGGGGAGTCGGATGATAGGTTTTGGGAAGACGCCGACCGGTTTTAAGATCCG
AAGTGGGCTTCTCGGGCGGTGCGCCAACATCAGTGCT-------------------------------------------
-GGGGATTCTAGAGCTGGAGAGGGATTCTGGATAGGACCAGCTTGTTAGAAGTTGGCAGACGTCTGGGCTCCTCGAGAGC
TCCCTGATTTTGGGCCGACGTAGAGGATTTCAAACATCCAGATCAGTCCAGT-CGATTTGCTGAGCTGCGTTGAAGGCCT
AAAAATGTTTTGAACCATTCATTTCAAACATTTGGGATAATTTGATGAGCTGCG-----GATGTCATATTGGGAGGAGTT
CACAACGGTGTGATACAGG-------------------------------------------------------------
-------------------------------------------------------------------GCACCCTTAGCAG
TGAAAGCTTGTCCAACTTGTCTACAAAAA-------TTGTTTTTTCAAGAAAGAAAAGAAAAGAAACAGTTCGTTAAAGC
TATCACGGAGCACTCCTGAGACAGACGGTGGTCCCGACACGCTAA-TTAAGTCCCACGTGTCAGTGTGACGGCGAGCAAC
CTGGATAAGAAGGACCTCATAAAACCTCGGGCTACCTCCGAATAGAGAGGCAACCCAACGAAGCAAACCGCGACAGAAAC
TGGTGGCTGGGCCACTGGTTTCATTTATCTTTTTTCCTTCTAGCTAACGATCGATAGAAGCCAGTGGGCGCGCTGCGCAG
CTACAAATACGCCACCAACCTGACCCGCTGATCCCATCCAATTCCCCATTCCCAAAGAAAGTCATCCG------------
-------AGAATCAGAACCTCGTCCACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCCTGGGCGGACCAGCACAAG
CTCGCCACCGTCGGTCAGTCTCTGTCCCTCGGTCCCCCTTTCTCTCCCGCGATCTCCGATCGGTGTTCTTGTATAGTTGT
GAATTTGTGATGTGAGACCAGGTACTGATTTTGA--------TTGCCGTGAATGCAGGGGCGATGTGGACGATGGCGGTT
GGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAGGGCGGCGGGGTTCACGGTCGCTGCCGCGCTCGGCGGAGCGGCGCT
GGCGCACCACTACTACGCCGCCAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACTTCTACTCGCAGCTACCGG
CGGCCACCGGCGAGGATGGCCAGGAGAACGAGCGGTGGAGCTACTAGCA---GATCAGACGTTCAGATCACGGCCGGCCG
GCCGGCCAGCCGTGGATCGAAACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTAATTAATAGCCCATGACGT
GGCGCGGCTCATTTGTCCTAATCCATCCAGCGGGGAAGACGGGATTATCTTATCTACTTTGTACT----ATCCATCCGGC
AAGTGGCGTTGTTGTCTCCATCATCTAGTAGGTGTGATGGGGGTGGGGTGGGGGTAGGATTGG---------TTCCCTCT
TCTCTATGTCTATGATTGAAGGAACCAAGAAACCCAACGATGCCTTGCGGATTATAGTAGATAGAATTCTGTCTGTTTGG
ATGAAGTTGATCGAATAAACAACAGCGAGTCGCCTGGGTTATCCAAGTTTTAAACTTTTAATAGCGTCCGGCACACAGTG
AGAAGCGAGGCCGGCCT---------------------------------------------------------------
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-----------------------------------AGTCATGAGAAAAGAATCCTGGAATCCGTGGTTGTTACAGTATCC
ATTCAAGGGGTCCTTATGTTAACTGGATCTGGAAGGAAGAATCTTTCCCGGAAGAAAGTGGAGAAAAGAGAGAGAAGCTG
GCATTTTAATTTCAGTTGCACACAACTGATAATCATGACAAATGCAATTGCAAGGTATGGTAATGTCTTTGAGAATCTTT
GGAGTATTTTGCTGCAACATGCAACATAATAAAGCATACTATAATTTAAATTAGGTGTAAAGTTATAGCTACAACGGCAA
CCAGCAAATTTCCTTCGGTATCCGTGTGCAAACAGGGGGGACTAGTCAGTGGGCACGGATGCGGGAGGCAGCGATTCAAC
CGTATCCTGTATATGTCCGTCAGTAAATTTAAATTCAAATGTACGTCG----------CGCGCCGGATCACACCCGCGCC
GGATCGCATCCCCGATC------------------------------------------------------ACAACCAAA
ATGAGACAAATATGTTTAGTTTTTACATGCCCAAATCCAAAAGAACATCAGTTTGGCAGTCCGTGCATTTCCGCCCTGCC
GGACCGGCAATTCCAGCAAGCTGCTCCTCGATCAAGGAGGTGTCGTCG-
>chr5B_1
AACCCGGCGATCGAGGGAGGCGTCACGGATTCGCTCGGAG-CCCCCCTCGGATTTGTAGTCCTGGTGGAGCGGAGGCTGT
TCCGAGCGGTAGCCGCCGAGCAGCCACCATGCTTGAGTCTTCTTCGCCTCGGTCTTCTTGACCATTGCGGCGGCCGATGG
AGGTATTGTGTGTGACG-CTCTCAGATA-GGGGAGTTGGATGATGGGTTTTGGGAAGACGCCGACCGGTTTTAAGATCCG
AAGTGGGCTTCTCGAGCGGCGCGCCAACATAAATGCGAGTAGACGACGAGACGGTGATAGCGGCTTCAGTGCTGGGGGGG
GGGGGGTTCTAGAGCCGAGGAGGGTTTCCGGATAGGACCGAGTTGTTGGAAGTTGGCAGACATATGAGCTCCT-AAGAGC
TCCCCGGTTTTGAGCCGACATAGAGGATTTCAAAC------ATTAGTCTGGTCTGATTTGGTGAGCTGCGTTGAAGGCCT
AAAAATGTTTTGGACAGTTCATTTCAAATATTTAGGACAATTTGATGAGCCGCGTTGAAGATGTCATATTGGGAAGAGGA
GTTCACAACTGCTTCCTCTGTCCGGAAATACTTGTCATCAAAATGAATAAAAGAGAATGTATCTAGATGTATTTTAGTTC
TAGATACATCCTCTTTTGTCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATGTGATTAGGAGCACCCTTAGCAG
TGAAAGGTTGTCCAACTTGTCTAAGAAATAACCAGTTTGTTTTTTCAGAAAAGAAAAAGAATAAC-CAGTTTGTTAAAGC
TATCACTGGGCACCCGTGATACAGACGGTGGTCCCGACACGCTAC-TTAAGTCCCACGTGTCAGTGTGATGGCGAGCAAC
CTGGATAAGAAGGACCTGATAAAACCTCGGGCTACCTCCGAATAGAGAGGCAACCCAACGAAGCAAACCGCGACAGAAAC
TGGTGGCTGGGCCACTGGTTTCATTTATCT-TTTTCCTTCTAGCTGACGATCGATAGAAGCCAGTGGGCGCGCTGCGCAG
CTACAAATACGCCACCAACCTGACGCGCTGATCCCATCCAATTCCCCATTCCCAAAGAAAGTCATCCAAC-----AATCA
CTGCAAGAGATTAGGAACCTCGTCGACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCCTGGGTGGACCAGCACAAG
CTCGCCACCGTCGGTCAGTCTCGGTCCTTCGGTCCCCCCTTCCCTCCCGTGATCTACGATCGGTCTTCTTGTACGTAG--
----TTGTGATGTGAGACGAGGTACTGATTTTGA--------TCGTCGTGGATGCAGGGGCGATGTGGACGACGGCGGTT
GGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAAGGCGGCGGGGTTCACGGTCGCTGCCGCGCTCGGCGGAGCGGCGCT
GGCGCACCACTACTACGCCGCGAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACTTCTACTCGCAGCTGCCGG
CGGCCACCGGCGAAGACGGCCAGGAGAACGAGCGGTGGACCTACTAGCA---GATCAGACGTTCAGATCACGGCCGGCCG
GCCG----GCCGTGGATCGAAACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTAATTAATAGCCCATGACGT
GGCGCGGCTCATTTG-CCTAATCCATCCAGCGGGGAAGACGGGATTATCTTATCTGCTTTGTACT----ATCCATCCAGC
AAGTGGCGTTGTTGTCTCCATCATCTAGTAGGTGTGATGGGGGTGGGGGTAGT-----ATTAG---------TTCCCTCT
TCTCTATGTCTATGATTGAAGGAACCAAGAAACCCAGCGATGCATTGCAGATTATAGTAGATAGAATTCTGTCTGTTTGG
ATGAAGTTGATCGAATAAACAACAGCAAGTCGCCTGAGTTATCCAAGTTTTAAACTTTTAATAGTGTCCGGCACACAGTG
AGAAGCGAGGCCGGCCTAGTGAGTATCTGGTGATACCGCGGCTCAGGTGCTACCGTGATACGAGCTCCTGGGCCGTCGGA
TCCCAGATCCAATGGCAAACAGGGAGCTGCTGTAGCTGCTGTATTTGTGCGCATTTTTCAGATTTTACGAGGGCTTTTTT
GCAAAAATGTCATCATTTCACAGGAGCTCTTGGATCTAAGATCCAATGGCCGAGCTCGCACGGGAGCACCTAAGCTTAGG
TGCTCCCGGAGCACCTGATATTTTCCCGCCGGCCTAGTCATGAGAAAAGAATCCTGGAATCCGTGGTTGTTACATTATCC
ATTCAAGGGATCCATATGTTAATTGGATCTGGAAGGAAGAATCTTTCTCGAAAGAAAGTGGAGAAAAGAGAGAGAGGCTG
GCATTTTAATTTCAGTTGCACACAACTGATACTCACGACAAATGCAATTGCAAGGTATGGTAATGTCTTTGAGAGTCTTT
AGAGTATTTTGCTGCAACGTGCAACATAATAAAGC--------ATATAAATTAGGTGTAAAGTTATGGCTACAGCAGCAA
CCAGCAAATTTCCTCTCGTATTCGTTCGCGGACAGGGGACCAGTCCACTGATATA--GATGCGGGAGGCAGCCATCCACC
CGTATCCTGTATATGTTAGCCAGTAAATTCAAATTCAAATATGCGTTGATCCACACAACGCGTTGGATCACACCCGCGCC
GGATCGCGCATTCCTGATCACAACCAAAAAGAGGCAAATATGTTAGTCTTTACATGCCCAAATCCAAAAGAACAACCAAA
AAGAGGCAAATATGCTTAGTCTTTACATGCCCAAATCCAAAAGAACACCAGTCTGGCACTCTGTGCATTTCTGCCCTGCC
GGACCGGCAATCCCAGCAAGCTGCTCCCCGATCAAGGAGGTGTCGTCGC
>SNPs
-------S------------SS---S--------------S--------S-----------------S--------S-S-
--------------------------------------S-----S-----------------------------------
----------------S--------------------S------------------------S-----------------
------------------------------S-------S------S-------------------------S-S------
---------------------------S----------S--------------S--------------------------
--------------------------------------SSS----------------------------S----------
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----------------S-------------------S-----------------------------S-------------
------------------S-------------------S------S----------------------------------
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-----------------------------S---------S---------------------------------S------
--------------------------------------------------------S-----------SSSSSSS-----
---S----------------------------------------------------------------------------
---------------S------S-S-------------------------------S-----------------------
------------S------S--S---S------SSSSSSSSS--------------------------------------
--------------------------------------------------------------S-----------------
---------S--------S-------------------------------------------------------------
------------------------------------------------SSSS---------S------------------
--------------------S-----------------------------------------------S-----------
-----------------------------------------------------------------SSSS-----------
----------------------------------------S---------------------SSSSSSSSSS--------
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----S-------------S-------------------------------------------------------------
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---------------------------------------------------------------------S----------
----------------------------------------------------S---------------------------
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------------------S------------S-SSS-S-SS-----------------------------S---S-----
-S----S-----------------S-------------------SS---------S---S------------------S-
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----------------------------------S-------------S-------------S------------S--SS
S-----SS----------------------------S------------
>forward_79
-----------------------------------------------------------TCCTGGTGTAGCGGAGGTTA-
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>reverse_1747
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------------------------------------------------------------------TCCATCCATCCAGC
AAGTGG--------------------------------------------------------------------------
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