Multiple sequence alignment - TraesCS5A01G144700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G144700 chr5A 100.000 2548 0 0 1 2548 320742248 320744795 0.000000e+00 4706.0
1 TraesCS5A01G144700 chr5D 84.891 920 63 37 914 1799 233819459 233818582 0.000000e+00 859.0
2 TraesCS5A01G144700 chr5D 91.287 505 30 6 1 497 233843071 233842573 0.000000e+00 676.0
3 TraesCS5A01G144700 chr5D 83.987 612 32 31 1990 2548 233818518 233817920 6.240000e-146 527.0
4 TraesCS5A01G144700 chr5D 91.716 169 8 5 784 952 233842464 233842302 1.970000e-56 230.0
5 TraesCS5A01G144700 chr5D 100.000 53 0 0 718 770 233842502 233842450 5.800000e-17 99.0
6 TraesCS5A01G144700 chr5D 79.851 134 23 4 371 504 396415868 396415739 7.500000e-16 95.3
7 TraesCS5A01G144700 chr5D 97.059 34 1 0 640 673 233842499 233842532 9.850000e-05 58.4
8 TraesCS5A01G144700 chr5B 88.095 588 26 17 1236 1799 271034801 271035368 0.000000e+00 658.0
9 TraesCS5A01G144700 chr5B 89.848 394 23 8 854 1240 271028781 271029164 8.190000e-135 490.0
10 TraesCS5A01G144700 chr5B 82.343 606 39 32 1990 2548 271035433 271036017 4.970000e-127 464.0
11 TraesCS5A01G144700 chr5B 95.455 44 1 1 1864 1906 563720756 563720799 4.550000e-08 69.4
12 TraesCS5A01G144700 chr5B 95.455 44 1 1 1864 1906 563740691 563740734 4.550000e-08 69.4
13 TraesCS5A01G144700 chr7D 89.305 187 17 3 380 565 565464316 565464132 5.480000e-57 231.0
14 TraesCS5A01G144700 chr2D 87.879 198 20 2 365 561 247053918 247053724 1.970000e-56 230.0
15 TraesCS5A01G144700 chr4D 83.590 195 27 5 371 565 105974629 105974818 7.240000e-41 178.0
16 TraesCS5A01G144700 chr4D 80.282 213 28 11 354 562 372465842 372466044 5.680000e-32 148.0
17 TraesCS5A01G144700 chr4D 81.347 193 16 8 1207 1379 103236681 103236489 3.420000e-29 139.0
18 TraesCS5A01G144700 chr4D 79.487 195 25 11 371 565 488518219 488518398 9.570000e-25 124.0
19 TraesCS5A01G144700 chr4A 83.978 181 18 5 1207 1376 471929642 471929822 2.030000e-36 163.0
20 TraesCS5A01G144700 chr4A 85.897 78 9 2 354 431 543570683 543570608 5.840000e-12 82.4
21 TraesCS5A01G144700 chr4A 89.130 46 5 0 318 363 578377863 578377908 9.850000e-05 58.4
22 TraesCS5A01G144700 chr4B 82.320 181 14 6 1217 1379 147369500 147369320 9.500000e-30 141.0
23 TraesCS5A01G144700 chrUn 95.000 60 3 0 371 430 88048266 88048325 7.500000e-16 95.3
24 TraesCS5A01G144700 chr7B 90.741 54 1 4 512 565 552786118 552786167 4.550000e-08 69.4
25 TraesCS5A01G144700 chr2B 95.238 42 2 0 1864 1905 739462804 739462763 1.640000e-07 67.6
26 TraesCS5A01G144700 chr2B 92.857 42 3 0 1864 1905 443658246 443658205 7.610000e-06 62.1
27 TraesCS5A01G144700 chr2B 100.000 33 0 0 1865 1897 792996801 792996769 7.610000e-06 62.1
28 TraesCS5A01G144700 chr6B 90.476 42 4 0 1864 1905 207924802 207924761 3.540000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G144700 chr5A 320742248 320744795 2547 False 4706 4706 100.000000 1 2548 1 chr5A.!!$F1 2547
1 TraesCS5A01G144700 chr5D 233817920 233819459 1539 True 693 859 84.439000 914 2548 2 chr5D.!!$R2 1634
2 TraesCS5A01G144700 chr5D 233842302 233843071 769 True 335 676 94.334333 1 952 3 chr5D.!!$R3 951
3 TraesCS5A01G144700 chr5B 271034801 271036017 1216 False 561 658 85.219000 1236 2548 2 chr5B.!!$F4 1312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 730 0.882927 TCTTTTTGACGGGCGAGTGG 60.883 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2044 0.248012 TGACCGATGTTGTGCCGTAT 59.752 50.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.272283 ACATTACACGTCAATACCCCTAG 57.728 43.478 0.00 0.00 0.00 3.02
69 70 7.170277 ACCCCTAGAAAACATTACACGTTAAT 58.830 34.615 0.00 0.00 0.00 1.40
71 72 8.606602 CCCCTAGAAAACATTACACGTTAATAC 58.393 37.037 0.00 0.00 0.00 1.89
111 112 9.970553 TCACGGTGATATTAGGTAGAATATACT 57.029 33.333 6.76 0.00 33.14 2.12
192 193 2.540101 GAGGAAAGATACCGATTGCACG 59.460 50.000 0.00 0.00 0.00 5.34
302 303 4.481368 AAACACCGGAGCAACATAGATA 57.519 40.909 9.46 0.00 0.00 1.98
311 312 6.035005 CCGGAGCAACATAGATAATTGATACG 59.965 42.308 0.00 0.00 43.80 3.06
340 341 1.936547 GGTGAGATTCGTTGCATCTCC 59.063 52.381 10.90 0.04 44.29 3.71
363 364 6.477688 TCCGTAACTCGCTCTTTTTATATTGG 59.522 38.462 0.00 0.00 38.35 3.16
416 423 1.065273 CTGAAAGATGCATGCGGCC 59.935 57.895 14.09 4.40 37.87 6.13
417 424 2.025156 GAAAGATGCATGCGGCCG 59.975 61.111 24.05 24.05 43.89 6.13
451 458 3.883489 AGAGCAAACAAGTAACAAGGTCC 59.117 43.478 0.00 0.00 0.00 4.46
466 473 1.349688 AGGTCCGCAATCCAAGTACAA 59.650 47.619 0.00 0.00 0.00 2.41
470 477 1.393539 CCGCAATCCAAGTACAACTCG 59.606 52.381 0.00 0.00 0.00 4.18
524 532 4.933400 ACAGTAAACTAATAGCCACAACCG 59.067 41.667 0.00 0.00 0.00 4.44
537 545 2.943033 CCACAACCGGCTAGAAAATAGG 59.057 50.000 0.00 0.00 0.00 2.57
538 546 3.370103 CCACAACCGGCTAGAAAATAGGA 60.370 47.826 0.00 0.00 0.00 2.94
539 547 3.621715 CACAACCGGCTAGAAAATAGGAC 59.378 47.826 0.00 0.00 0.00 3.85
540 548 3.262405 ACAACCGGCTAGAAAATAGGACA 59.738 43.478 0.00 0.00 0.00 4.02
541 549 4.258543 CAACCGGCTAGAAAATAGGACAA 58.741 43.478 0.00 0.00 0.00 3.18
542 550 4.563140 ACCGGCTAGAAAATAGGACAAA 57.437 40.909 0.00 0.00 0.00 2.83
543 551 4.913784 ACCGGCTAGAAAATAGGACAAAA 58.086 39.130 0.00 0.00 0.00 2.44
544 552 5.506708 ACCGGCTAGAAAATAGGACAAAAT 58.493 37.500 0.00 0.00 0.00 1.82
545 553 5.357032 ACCGGCTAGAAAATAGGACAAAATG 59.643 40.000 0.00 0.00 0.00 2.32
546 554 5.588648 CCGGCTAGAAAATAGGACAAAATGA 59.411 40.000 0.00 0.00 0.00 2.57
547 555 6.458342 CCGGCTAGAAAATAGGACAAAATGAC 60.458 42.308 0.00 0.00 0.00 3.06
548 556 6.316390 CGGCTAGAAAATAGGACAAAATGACT 59.684 38.462 0.00 0.00 0.00 3.41
549 557 7.494625 CGGCTAGAAAATAGGACAAAATGACTA 59.505 37.037 0.00 0.00 0.00 2.59
550 558 9.174166 GGCTAGAAAATAGGACAAAATGACTAA 57.826 33.333 0.00 0.00 0.00 2.24
555 563 9.406828 GAAAATAGGACAAAATGACTAAACACC 57.593 33.333 0.00 0.00 0.00 4.16
556 564 8.706322 AAATAGGACAAAATGACTAAACACCT 57.294 30.769 0.00 0.00 0.00 4.00
557 565 9.802039 AAATAGGACAAAATGACTAAACACCTA 57.198 29.630 0.00 0.00 0.00 3.08
558 566 9.975218 AATAGGACAAAATGACTAAACACCTAT 57.025 29.630 0.00 0.00 38.22 2.57
559 567 7.923414 AGGACAAAATGACTAAACACCTATC 57.077 36.000 0.00 0.00 0.00 2.08
560 568 6.884836 AGGACAAAATGACTAAACACCTATCC 59.115 38.462 0.00 0.00 0.00 2.59
561 569 6.657541 GGACAAAATGACTAAACACCTATCCA 59.342 38.462 0.00 0.00 0.00 3.41
562 570 7.339466 GGACAAAATGACTAAACACCTATCCAT 59.661 37.037 0.00 0.00 0.00 3.41
563 571 9.391006 GACAAAATGACTAAACACCTATCCATA 57.609 33.333 0.00 0.00 0.00 2.74
564 572 9.920946 ACAAAATGACTAAACACCTATCCATAT 57.079 29.630 0.00 0.00 0.00 1.78
599 607 9.613428 TCTATATCAATTTTTGTCTACCAGGTG 57.387 33.333 0.76 0.00 0.00 4.00
600 608 9.396022 CTATATCAATTTTTGTCTACCAGGTGT 57.604 33.333 0.76 0.00 0.00 4.16
602 610 9.747898 ATATCAATTTTTGTCTACCAGGTGTAA 57.252 29.630 0.76 0.00 0.00 2.41
603 611 8.650143 ATCAATTTTTGTCTACCAGGTGTAAT 57.350 30.769 0.76 0.00 0.00 1.89
604 612 7.881142 TCAATTTTTGTCTACCAGGTGTAATG 58.119 34.615 0.76 0.00 0.00 1.90
605 613 7.504238 TCAATTTTTGTCTACCAGGTGTAATGT 59.496 33.333 0.76 0.00 0.00 2.71
606 614 7.833285 ATTTTTGTCTACCAGGTGTAATGTT 57.167 32.000 0.76 0.00 0.00 2.71
607 615 7.648039 TTTTTGTCTACCAGGTGTAATGTTT 57.352 32.000 0.76 0.00 0.00 2.83
608 616 7.648039 TTTTGTCTACCAGGTGTAATGTTTT 57.352 32.000 0.76 0.00 0.00 2.43
609 617 8.749026 TTTTGTCTACCAGGTGTAATGTTTTA 57.251 30.769 0.76 0.00 0.00 1.52
610 618 8.749026 TTTGTCTACCAGGTGTAATGTTTTAA 57.251 30.769 0.76 0.00 0.00 1.52
611 619 8.927675 TTGTCTACCAGGTGTAATGTTTTAAT 57.072 30.769 0.76 0.00 0.00 1.40
612 620 8.330466 TGTCTACCAGGTGTAATGTTTTAATG 57.670 34.615 0.76 0.00 0.00 1.90
613 621 8.158132 TGTCTACCAGGTGTAATGTTTTAATGA 58.842 33.333 0.76 0.00 0.00 2.57
614 622 8.448615 GTCTACCAGGTGTAATGTTTTAATGAC 58.551 37.037 0.76 0.00 0.00 3.06
615 623 8.380099 TCTACCAGGTGTAATGTTTTAATGACT 58.620 33.333 0.76 0.00 0.00 3.41
616 624 9.661563 CTACCAGGTGTAATGTTTTAATGACTA 57.338 33.333 0.76 0.00 0.00 2.59
617 625 8.927675 ACCAGGTGTAATGTTTTAATGACTAA 57.072 30.769 0.00 0.00 0.00 2.24
618 626 9.357161 ACCAGGTGTAATGTTTTAATGACTAAA 57.643 29.630 0.00 0.00 0.00 1.85
619 627 9.620660 CCAGGTGTAATGTTTTAATGACTAAAC 57.379 33.333 0.00 0.00 35.38 2.01
627 635 9.541143 AATGTTTTAATGACTAAACAAGGGTTG 57.459 29.630 0.00 0.00 44.58 3.77
628 636 6.981559 TGTTTTAATGACTAAACAAGGGTTGC 59.018 34.615 0.00 0.00 40.26 4.17
629 637 6.716934 TTTAATGACTAAACAAGGGTTGCA 57.283 33.333 0.00 0.00 37.30 4.08
630 638 6.716934 TTAATGACTAAACAAGGGTTGCAA 57.283 33.333 0.00 0.00 37.30 4.08
631 639 5.806654 AATGACTAAACAAGGGTTGCAAT 57.193 34.783 0.59 0.00 37.30 3.56
632 640 4.582701 TGACTAAACAAGGGTTGCAATG 57.417 40.909 0.59 0.00 37.30 2.82
633 641 3.243704 TGACTAAACAAGGGTTGCAATGC 60.244 43.478 0.59 0.00 37.30 3.56
634 642 2.697751 ACTAAACAAGGGTTGCAATGCA 59.302 40.909 2.72 2.72 37.30 3.96
635 643 1.952193 AAACAAGGGTTGCAATGCAC 58.048 45.000 7.72 3.17 38.71 4.57
636 644 1.122227 AACAAGGGTTGCAATGCACT 58.878 45.000 7.72 0.00 38.71 4.40
637 645 1.993956 ACAAGGGTTGCAATGCACTA 58.006 45.000 7.72 0.00 38.71 2.74
638 646 2.528564 ACAAGGGTTGCAATGCACTAT 58.471 42.857 7.72 0.00 38.71 2.12
639 647 3.696045 ACAAGGGTTGCAATGCACTATA 58.304 40.909 7.72 0.00 38.71 1.31
640 648 3.443681 ACAAGGGTTGCAATGCACTATAC 59.556 43.478 7.72 2.89 38.71 1.47
641 649 3.652057 AGGGTTGCAATGCACTATACT 57.348 42.857 7.72 0.00 38.71 2.12
642 650 3.545703 AGGGTTGCAATGCACTATACTC 58.454 45.455 7.72 3.03 38.71 2.59
643 651 3.054434 AGGGTTGCAATGCACTATACTCA 60.054 43.478 7.72 0.00 38.71 3.41
644 652 3.694072 GGGTTGCAATGCACTATACTCAA 59.306 43.478 7.72 0.00 38.71 3.02
645 653 4.201950 GGGTTGCAATGCACTATACTCAAG 60.202 45.833 7.72 0.00 38.71 3.02
646 654 4.201950 GGTTGCAATGCACTATACTCAAGG 60.202 45.833 7.72 0.00 38.71 3.61
647 655 2.945008 TGCAATGCACTATACTCAAGGC 59.055 45.455 2.72 0.00 31.71 4.35
651 659 5.296780 GCAATGCACTATACTCAAGGCTTAA 59.703 40.000 0.00 0.00 0.00 1.85
652 660 6.016777 GCAATGCACTATACTCAAGGCTTAAT 60.017 38.462 0.00 0.00 0.00 1.40
667 675 9.688091 TCAAGGCTTAATCTATATCGATACTCT 57.312 33.333 7.41 0.00 0.00 3.24
714 722 9.542462 TGGTCTTAGAATATATCTTTTTGACGG 57.458 33.333 0.00 0.00 39.71 4.79
715 723 8.989980 GGTCTTAGAATATATCTTTTTGACGGG 58.010 37.037 0.00 0.00 39.71 5.28
716 724 8.496751 GTCTTAGAATATATCTTTTTGACGGGC 58.503 37.037 0.00 0.00 39.71 6.13
717 725 5.924475 AGAATATATCTTTTTGACGGGCG 57.076 39.130 0.00 0.00 33.39 6.13
718 726 5.607477 AGAATATATCTTTTTGACGGGCGA 58.393 37.500 0.00 0.00 33.39 5.54
719 727 5.696724 AGAATATATCTTTTTGACGGGCGAG 59.303 40.000 0.00 0.00 33.39 5.03
720 728 2.754946 TATCTTTTTGACGGGCGAGT 57.245 45.000 0.00 0.00 0.00 4.18
721 729 1.156736 ATCTTTTTGACGGGCGAGTG 58.843 50.000 0.00 0.00 0.00 3.51
722 730 0.882927 TCTTTTTGACGGGCGAGTGG 60.883 55.000 0.00 0.00 0.00 4.00
723 731 1.153127 TTTTTGACGGGCGAGTGGT 60.153 52.632 0.00 0.00 0.00 4.16
724 732 1.161563 TTTTTGACGGGCGAGTGGTC 61.162 55.000 0.00 0.00 0.00 4.02
725 733 2.035237 TTTTGACGGGCGAGTGGTCT 62.035 55.000 0.00 0.00 0.00 3.85
726 734 2.035237 TTTGACGGGCGAGTGGTCTT 62.035 55.000 0.00 0.00 0.00 3.01
727 735 1.180456 TTGACGGGCGAGTGGTCTTA 61.180 55.000 0.00 0.00 0.00 2.10
728 736 1.139095 GACGGGCGAGTGGTCTTAG 59.861 63.158 0.00 0.00 0.00 2.18
729 737 1.303888 ACGGGCGAGTGGTCTTAGA 60.304 57.895 0.00 0.00 0.00 2.10
770 778 2.508526 CACTCAAGGCTTAGGCAGTTT 58.491 47.619 8.84 0.00 40.87 2.66
771 779 2.887152 CACTCAAGGCTTAGGCAGTTTT 59.113 45.455 8.84 0.00 40.87 2.43
772 780 3.319122 CACTCAAGGCTTAGGCAGTTTTT 59.681 43.478 8.84 0.00 40.87 1.94
774 782 3.823304 CTCAAGGCTTAGGCAGTTTTTCT 59.177 43.478 8.84 0.00 40.87 2.52
775 783 3.821033 TCAAGGCTTAGGCAGTTTTTCTC 59.179 43.478 8.84 0.00 40.87 2.87
776 784 3.508845 AGGCTTAGGCAGTTTTTCTCA 57.491 42.857 8.84 0.00 40.87 3.27
777 785 3.832527 AGGCTTAGGCAGTTTTTCTCAA 58.167 40.909 8.84 0.00 40.87 3.02
778 786 4.215109 AGGCTTAGGCAGTTTTTCTCAAA 58.785 39.130 8.84 0.00 40.87 2.69
779 787 4.649218 AGGCTTAGGCAGTTTTTCTCAAAA 59.351 37.500 8.84 0.00 40.87 2.44
780 788 5.128663 AGGCTTAGGCAGTTTTTCTCAAAAA 59.871 36.000 8.84 0.00 40.87 1.94
781 789 5.991606 GGCTTAGGCAGTTTTTCTCAAAAAT 59.008 36.000 0.00 0.00 40.15 1.82
782 790 7.015195 AGGCTTAGGCAGTTTTTCTCAAAAATA 59.985 33.333 8.84 0.00 40.15 1.40
783 791 7.655732 GGCTTAGGCAGTTTTTCTCAAAAATAA 59.344 33.333 0.00 0.00 40.15 1.40
784 792 9.040939 GCTTAGGCAGTTTTTCTCAAAAATAAA 57.959 29.630 0.00 0.00 39.19 1.40
786 794 9.541143 TTAGGCAGTTTTTCTCAAAAATAAAGG 57.459 29.630 0.00 0.00 41.85 3.11
787 795 6.483307 AGGCAGTTTTTCTCAAAAATAAAGGC 59.517 34.615 0.00 2.26 41.85 4.35
788 796 6.483307 GGCAGTTTTTCTCAAAAATAAAGGCT 59.517 34.615 0.00 0.00 41.85 4.58
789 797 7.012327 GGCAGTTTTTCTCAAAAATAAAGGCTT 59.988 33.333 0.00 0.00 41.85 4.35
790 798 9.040939 GCAGTTTTTCTCAAAAATAAAGGCTTA 57.959 29.630 0.00 0.00 41.85 3.09
792 800 9.764363 AGTTTTTCTCAAAAATAAAGGCTTAGG 57.236 29.630 0.00 0.00 41.85 2.69
793 801 8.495949 GTTTTTCTCAAAAATAAAGGCTTAGGC 58.504 33.333 0.00 0.00 41.85 3.93
794 802 6.909550 TTCTCAAAAATAAAGGCTTAGGCA 57.090 33.333 8.84 0.00 40.87 4.75
795 803 6.515272 TCTCAAAAATAAAGGCTTAGGCAG 57.485 37.500 8.84 0.00 40.87 4.85
796 804 6.010219 TCTCAAAAATAAAGGCTTAGGCAGT 58.990 36.000 8.84 0.00 40.87 4.40
797 805 6.493458 TCTCAAAAATAAAGGCTTAGGCAGTT 59.507 34.615 8.84 4.33 40.87 3.16
798 806 7.668052 TCTCAAAAATAAAGGCTTAGGCAGTTA 59.332 33.333 8.84 6.49 40.87 2.24
799 807 7.826690 TCAAAAATAAAGGCTTAGGCAGTTAG 58.173 34.615 8.84 0.00 40.87 2.34
800 808 5.836821 AAATAAAGGCTTAGGCAGTTAGC 57.163 39.130 8.84 0.00 44.65 3.09
887 895 6.893958 TTATTTTGTTTGATGTGTTTGCGT 57.106 29.167 0.00 0.00 0.00 5.24
894 902 3.791973 TGATGTGTTTGCGTTTCCTTT 57.208 38.095 0.00 0.00 0.00 3.11
899 907 5.250235 TGTGTTTGCGTTTCCTTTCATTA 57.750 34.783 0.00 0.00 0.00 1.90
961 969 8.179615 TCCACGCATATATATTGTTCTAGTACG 58.820 37.037 0.00 0.00 0.00 3.67
970 978 2.811410 TGTTCTAGTACGTGGGATGGT 58.189 47.619 0.00 0.00 0.00 3.55
1004 1012 0.409484 AAACCCACCTCATTCCCCAG 59.591 55.000 0.00 0.00 0.00 4.45
1005 1013 2.155197 AACCCACCTCATTCCCCAGC 62.155 60.000 0.00 0.00 0.00 4.85
1025 1033 0.039165 GAAAACTTCCAAGCCGCCAG 60.039 55.000 0.00 0.00 0.00 4.85
1026 1034 0.755327 AAAACTTCCAAGCCGCCAGT 60.755 50.000 0.00 0.00 0.00 4.00
1027 1035 0.109723 AAACTTCCAAGCCGCCAGTA 59.890 50.000 0.00 0.00 0.00 2.74
1093 1101 4.864334 CTCCTCCATGCCGCCCAC 62.864 72.222 0.00 0.00 0.00 4.61
1096 1104 4.511246 CTCCATGCCGCCCACCAT 62.511 66.667 0.00 0.00 0.00 3.55
1097 1105 4.818863 TCCATGCCGCCCACCATG 62.819 66.667 0.00 0.00 38.78 3.66
1113 1121 3.432445 ATGCTGCCCATGGAGGAGC 62.432 63.158 28.09 28.09 41.22 4.70
1115 1123 4.559063 CTGCCCATGGAGGAGCCG 62.559 72.222 15.22 0.00 41.22 5.52
1157 1165 1.596477 GGAGCGAGGATGGCATCAC 60.596 63.158 27.39 18.91 44.88 3.06
1288 1305 2.048597 TCGTCATGCGTGGACACC 60.049 61.111 5.98 0.00 42.13 4.16
1415 1438 2.833582 CCCCGCCTTCGAGCTAGA 60.834 66.667 0.00 0.00 38.10 2.43
1424 1447 4.377635 CGCCTTCGAGCTAGAGTAGATTAC 60.378 50.000 0.00 0.00 38.10 1.89
1496 1519 0.246360 ATCGCCGGATCGATGCATAA 59.754 50.000 17.54 0.00 46.18 1.90
1553 1608 8.525290 AATAATCAAAATCCCTCGTTCTCATT 57.475 30.769 0.00 0.00 0.00 2.57
1554 1609 6.840780 AATCAAAATCCCTCGTTCTCATTT 57.159 33.333 0.00 0.00 0.00 2.32
1557 1612 6.234920 TCAAAATCCCTCGTTCTCATTTGTA 58.765 36.000 0.00 0.00 0.00 2.41
1558 1613 6.712998 TCAAAATCCCTCGTTCTCATTTGTAA 59.287 34.615 0.00 0.00 0.00 2.41
1561 1616 6.683974 ATCCCTCGTTCTCATTTGTAAATG 57.316 37.500 10.35 10.35 45.49 2.32
1573 1628 9.868277 TCTCATTTGTAAATGTTTCAAAGTTGT 57.132 25.926 14.87 0.00 44.66 3.32
1580 1635 7.599245 TGTAAATGTTTCAAAGTTGTTTCGGTT 59.401 29.630 0.00 0.00 0.00 4.44
1612 1667 6.082338 GCTGTTGACATGTGATTGAAAGTAG 58.918 40.000 1.15 0.00 0.00 2.57
1654 1709 4.873827 ACTGTTACGCTTTTCTCTGTCAAA 59.126 37.500 0.00 0.00 0.00 2.69
1655 1710 5.527582 ACTGTTACGCTTTTCTCTGTCAAAT 59.472 36.000 0.00 0.00 0.00 2.32
1656 1711 5.985781 TGTTACGCTTTTCTCTGTCAAATC 58.014 37.500 0.00 0.00 0.00 2.17
1657 1712 3.795561 ACGCTTTTCTCTGTCAAATCG 57.204 42.857 0.00 0.00 0.00 3.34
1658 1713 2.480419 ACGCTTTTCTCTGTCAAATCGG 59.520 45.455 0.00 0.00 0.00 4.18
1659 1714 2.726066 CGCTTTTCTCTGTCAAATCGGC 60.726 50.000 0.00 0.00 0.00 5.54
1660 1715 2.414691 GCTTTTCTCTGTCAAATCGGCC 60.415 50.000 0.00 0.00 0.00 6.13
1700 1755 7.335627 TGGAACAATTAATCAGTACTGGGTAG 58.664 38.462 22.48 9.01 31.92 3.18
1704 1759 5.888982 ATTAATCAGTACTGGGTAGTGGG 57.111 43.478 22.48 0.00 39.23 4.61
1732 1787 4.449743 TGCGTTTAATATAATCCCGTGCTC 59.550 41.667 0.00 0.00 0.00 4.26
1757 1812 6.441274 TGAAGAAACTGCTGAATTAAAGCTG 58.559 36.000 14.35 14.35 43.13 4.24
1758 1813 5.382618 AGAAACTGCTGAATTAAAGCTGG 57.617 39.130 18.04 11.63 42.15 4.85
1781 1837 1.292061 CTGACGTTTTGTGTTCCGGA 58.708 50.000 0.00 0.00 0.00 5.14
1799 1855 1.000145 GAGAAATGAACGCCGGTCTC 59.000 55.000 2.87 0.36 0.00 3.36
1800 1856 0.320374 AGAAATGAACGCCGGTCTCA 59.680 50.000 2.87 3.83 0.00 3.27
1801 1857 0.442699 GAAATGAACGCCGGTCTCAC 59.557 55.000 2.87 0.00 0.00 3.51
1807 1863 0.389948 AACGCCGGTCTCACTGATTC 60.390 55.000 1.90 0.00 0.00 2.52
1808 1864 1.251527 ACGCCGGTCTCACTGATTCT 61.252 55.000 1.90 0.00 0.00 2.40
1809 1865 0.526524 CGCCGGTCTCACTGATTCTC 60.527 60.000 1.90 0.00 0.00 2.87
1810 1866 0.179097 GCCGGTCTCACTGATTCTCC 60.179 60.000 1.90 0.00 0.00 3.71
1811 1867 0.461961 CCGGTCTCACTGATTCTCCC 59.538 60.000 0.00 0.00 0.00 4.30
1812 1868 0.101399 CGGTCTCACTGATTCTCCCG 59.899 60.000 0.00 0.00 0.00 5.14
1813 1869 0.461961 GGTCTCACTGATTCTCCCGG 59.538 60.000 0.00 0.00 0.00 5.73
1814 1870 0.179097 GTCTCACTGATTCTCCCGGC 60.179 60.000 0.00 0.00 0.00 6.13
1815 1871 0.324738 TCTCACTGATTCTCCCGGCT 60.325 55.000 0.00 0.00 0.00 5.52
1816 1872 0.539051 CTCACTGATTCTCCCGGCTT 59.461 55.000 0.00 0.00 0.00 4.35
1817 1873 1.757118 CTCACTGATTCTCCCGGCTTA 59.243 52.381 0.00 0.00 0.00 3.09
1818 1874 1.480954 TCACTGATTCTCCCGGCTTAC 59.519 52.381 0.00 0.00 0.00 2.34
1827 1883 2.698797 TCTCCCGGCTTACTGATTAAGG 59.301 50.000 0.00 0.00 38.15 2.69
1840 1896 6.327386 ACTGATTAAGGTCATTATGGGTGT 57.673 37.500 0.00 0.00 0.00 4.16
1890 1946 9.838339 AAAACACTCTTATATTATGGGTCAGAG 57.162 33.333 0.00 0.00 33.83 3.35
1891 1947 7.546250 ACACTCTTATATTATGGGTCAGAGG 57.454 40.000 0.00 0.00 32.21 3.69
1892 1948 6.498651 ACACTCTTATATTATGGGTCAGAGGG 59.501 42.308 0.00 0.00 36.55 4.30
1893 1949 6.726299 CACTCTTATATTATGGGTCAGAGGGA 59.274 42.308 0.00 0.00 32.92 4.20
1894 1950 6.957020 ACTCTTATATTATGGGTCAGAGGGAG 59.043 42.308 0.00 0.00 32.21 4.30
1895 1951 6.875469 TCTTATATTATGGGTCAGAGGGAGT 58.125 40.000 0.00 0.00 0.00 3.85
1896 1952 8.008104 TCTTATATTATGGGTCAGAGGGAGTA 57.992 38.462 0.00 0.00 0.00 2.59
1897 1953 8.116669 TCTTATATTATGGGTCAGAGGGAGTAG 58.883 40.741 0.00 0.00 0.00 2.57
1898 1954 4.561254 ATTATGGGTCAGAGGGAGTAGT 57.439 45.455 0.00 0.00 0.00 2.73
1899 1955 5.681494 ATTATGGGTCAGAGGGAGTAGTA 57.319 43.478 0.00 0.00 0.00 1.82
1900 1956 5.681494 TTATGGGTCAGAGGGAGTAGTAT 57.319 43.478 0.00 0.00 0.00 2.12
1901 1957 6.791847 TTATGGGTCAGAGGGAGTAGTATA 57.208 41.667 0.00 0.00 0.00 1.47
1906 1962 6.507843 TGGGTCAGAGGGAGTAGTATATATGA 59.492 42.308 0.00 0.00 0.00 2.15
1912 1968 6.374894 AGAGGGAGTAGTATATATGAACACGC 59.625 42.308 0.00 0.00 0.00 5.34
1921 1977 7.886338 AGTATATATGAACACGCATGAGAGAA 58.114 34.615 2.50 0.00 0.00 2.87
1922 1978 8.360390 AGTATATATGAACACGCATGAGAGAAA 58.640 33.333 2.50 0.00 0.00 2.52
1923 1979 5.725110 ATATGAACACGCATGAGAGAAAC 57.275 39.130 2.50 0.00 0.00 2.78
1924 1980 3.111853 TGAACACGCATGAGAGAAACT 57.888 42.857 2.50 0.00 0.00 2.66
1925 1981 3.466836 TGAACACGCATGAGAGAAACTT 58.533 40.909 2.50 0.00 0.00 2.66
1926 1982 3.494626 TGAACACGCATGAGAGAAACTTC 59.505 43.478 2.50 0.00 0.00 3.01
1927 1983 2.417719 ACACGCATGAGAGAAACTTCC 58.582 47.619 2.50 0.00 0.00 3.46
1928 1984 1.734465 CACGCATGAGAGAAACTTCCC 59.266 52.381 2.50 0.00 0.00 3.97
1929 1985 1.347707 ACGCATGAGAGAAACTTCCCA 59.652 47.619 2.50 0.00 0.00 4.37
1930 1986 2.224523 ACGCATGAGAGAAACTTCCCAA 60.225 45.455 2.50 0.00 0.00 4.12
1931 1987 2.417933 CGCATGAGAGAAACTTCCCAAG 59.582 50.000 0.00 0.00 0.00 3.61
1932 1988 3.679389 GCATGAGAGAAACTTCCCAAGA 58.321 45.455 0.00 0.00 0.00 3.02
1933 1989 3.688673 GCATGAGAGAAACTTCCCAAGAG 59.311 47.826 0.00 0.00 0.00 2.85
1934 1990 4.805609 GCATGAGAGAAACTTCCCAAGAGT 60.806 45.833 0.00 0.00 0.00 3.24
1935 1991 5.312079 CATGAGAGAAACTTCCCAAGAGTT 58.688 41.667 0.00 0.00 38.92 3.01
1936 1992 6.467677 CATGAGAGAAACTTCCCAAGAGTTA 58.532 40.000 0.00 0.00 36.38 2.24
1937 1993 6.494666 TGAGAGAAACTTCCCAAGAGTTAA 57.505 37.500 0.00 0.00 36.38 2.01
1938 1994 6.525629 TGAGAGAAACTTCCCAAGAGTTAAG 58.474 40.000 0.00 0.00 36.38 1.85
1939 1995 6.326583 TGAGAGAAACTTCCCAAGAGTTAAGA 59.673 38.462 0.00 0.00 36.38 2.10
1940 1996 6.764379 AGAGAAACTTCCCAAGAGTTAAGAG 58.236 40.000 0.00 0.00 36.38 2.85
1950 2006 9.716556 TTCCCAAGAGTTAAGAGAGTATATCTT 57.283 33.333 0.00 0.00 38.84 2.40
1970 2026 9.726438 ATATCTTACAGAAAATATACAGGGTGC 57.274 33.333 0.00 0.00 0.00 5.01
1971 2027 7.195374 TCTTACAGAAAATATACAGGGTGCT 57.805 36.000 0.00 0.00 0.00 4.40
1972 2028 7.272978 TCTTACAGAAAATATACAGGGTGCTC 58.727 38.462 0.00 0.00 0.00 4.26
1973 2029 4.781934 ACAGAAAATATACAGGGTGCTCC 58.218 43.478 0.00 0.00 0.00 4.70
1974 2030 4.227300 ACAGAAAATATACAGGGTGCTCCA 59.773 41.667 7.20 0.00 38.24 3.86
1975 2031 4.576463 CAGAAAATATACAGGGTGCTCCAC 59.424 45.833 7.20 0.00 38.24 4.02
1976 2032 2.910688 AATATACAGGGTGCTCCACG 57.089 50.000 7.20 0.00 38.24 4.94
1977 2033 0.393077 ATATACAGGGTGCTCCACGC 59.607 55.000 7.20 4.47 45.64 5.34
1978 2034 1.682451 TATACAGGGTGCTCCACGCC 61.682 60.000 7.20 2.60 46.30 5.68
1983 2039 3.480133 GGTGCTCCACGCCCCTAT 61.480 66.667 0.00 0.00 43.74 2.57
1984 2040 2.138179 GGTGCTCCACGCCCCTATA 61.138 63.158 0.00 0.00 43.74 1.31
1985 2041 1.069258 GTGCTCCACGCCCCTATAC 59.931 63.158 0.00 0.00 38.05 1.47
1986 2042 2.338984 GCTCCACGCCCCTATACG 59.661 66.667 0.00 0.00 0.00 3.06
1987 2043 2.198287 GCTCCACGCCCCTATACGA 61.198 63.158 0.00 0.00 0.00 3.43
1988 2044 1.741327 GCTCCACGCCCCTATACGAA 61.741 60.000 0.00 0.00 0.00 3.85
2023 2083 3.049674 CATCGGCGGCTGTTGTGT 61.050 61.111 7.21 0.00 0.00 3.72
2026 2086 4.326766 CGGCGGCTGTTGTGTTGG 62.327 66.667 7.61 0.00 0.00 3.77
2032 2092 1.604604 GGCTGTTGTGTTGGCTCTTA 58.395 50.000 0.00 0.00 0.00 2.10
2054 2114 3.777106 TCTTGGAAGACAATGAGCACT 57.223 42.857 0.00 0.00 38.65 4.40
2078 2154 3.751698 CCACCTAACCTTGTGAAAGCTAC 59.248 47.826 0.00 0.00 34.37 3.58
2082 2167 3.963383 AACCTTGTGAAAGCTACGTTG 57.037 42.857 0.00 0.00 0.00 4.10
2084 2169 2.218603 CCTTGTGAAAGCTACGTTGGT 58.781 47.619 0.00 0.00 0.00 3.67
2096 2181 3.555586 GCTACGTTGGTTTTGAGGTCCTA 60.556 47.826 0.00 0.00 0.00 2.94
2118 2207 3.684788 AGATCGTGCTCGTTTTGCTAATT 59.315 39.130 8.17 0.00 38.33 1.40
2126 2215 6.363357 GTGCTCGTTTTGCTAATTGAGATTTT 59.637 34.615 11.97 0.00 0.00 1.82
2127 2216 6.363088 TGCTCGTTTTGCTAATTGAGATTTTG 59.637 34.615 11.97 0.00 0.00 2.44
2128 2217 6.183360 GCTCGTTTTGCTAATTGAGATTTTGG 60.183 38.462 11.97 0.00 0.00 3.28
2129 2218 5.633182 TCGTTTTGCTAATTGAGATTTTGGC 59.367 36.000 0.00 0.00 0.00 4.52
2130 2219 5.634859 CGTTTTGCTAATTGAGATTTTGGCT 59.365 36.000 0.00 0.00 0.00 4.75
2131 2220 6.400303 CGTTTTGCTAATTGAGATTTTGGCTG 60.400 38.462 0.00 0.00 0.00 4.85
2132 2221 5.981088 TTGCTAATTGAGATTTTGGCTGA 57.019 34.783 0.00 0.00 0.00 4.26
2133 2222 6.534475 TTGCTAATTGAGATTTTGGCTGAT 57.466 33.333 0.00 0.00 0.00 2.90
2134 2223 6.534475 TGCTAATTGAGATTTTGGCTGATT 57.466 33.333 0.00 0.00 0.00 2.57
2135 2224 6.938507 TGCTAATTGAGATTTTGGCTGATTT 58.061 32.000 0.00 0.00 0.00 2.17
2136 2225 8.065473 TGCTAATTGAGATTTTGGCTGATTTA 57.935 30.769 0.00 0.00 0.00 1.40
2137 2226 8.192774 TGCTAATTGAGATTTTGGCTGATTTAG 58.807 33.333 0.00 0.00 0.00 1.85
2153 2242 7.725610 CTGATTTAGCAGGTTTTATTCGTTG 57.274 36.000 0.00 0.00 32.26 4.10
2154 2243 7.441890 TGATTTAGCAGGTTTTATTCGTTGA 57.558 32.000 0.00 0.00 0.00 3.18
2155 2244 7.877003 TGATTTAGCAGGTTTTATTCGTTGAA 58.123 30.769 0.00 0.00 0.00 2.69
2156 2245 7.806014 TGATTTAGCAGGTTTTATTCGTTGAAC 59.194 33.333 0.00 0.00 0.00 3.18
2157 2246 6.621316 TTAGCAGGTTTTATTCGTTGAACA 57.379 33.333 0.00 0.00 0.00 3.18
2158 2247 5.508200 AGCAGGTTTTATTCGTTGAACAA 57.492 34.783 0.00 0.00 0.00 2.83
2185 2274 6.106877 TGATTTAGCAAGTTAACTGATCGC 57.893 37.500 9.34 9.83 0.00 4.58
2243 2360 2.504032 CGGCCCGCAAAGGATAGA 59.496 61.111 0.00 0.00 45.00 1.98
2244 2361 1.071471 CGGCCCGCAAAGGATAGAT 59.929 57.895 0.00 0.00 45.00 1.98
2245 2362 0.320374 CGGCCCGCAAAGGATAGATA 59.680 55.000 0.00 0.00 45.00 1.98
2246 2363 1.066143 CGGCCCGCAAAGGATAGATAT 60.066 52.381 0.00 0.00 45.00 1.63
2267 2384 2.732412 TACTCTTGTCTGTCAGCTGC 57.268 50.000 9.47 4.92 0.00 5.25
2268 2385 1.047002 ACTCTTGTCTGTCAGCTGCT 58.953 50.000 9.47 0.00 0.00 4.24
2269 2386 1.415659 ACTCTTGTCTGTCAGCTGCTT 59.584 47.619 9.47 0.00 0.00 3.91
2387 2520 5.187621 AGATACTATCAGGAGGAGGTAGC 57.812 47.826 0.00 0.00 0.00 3.58
2419 2552 2.053116 CACACGCACACGCTGTTC 60.053 61.111 0.00 0.00 45.53 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.265647 TCACCGTGAAATCAATTTTTCTGTA 57.734 32.000 0.00 0.00 36.71 2.74
71 72 8.915871 ATATCACCGTGAAATCAATTTTTCTG 57.084 30.769 5.07 0.00 36.71 3.02
183 184 6.519353 TTACCTAATATCAACGTGCAATCG 57.481 37.500 0.00 0.00 0.00 3.34
311 312 2.140717 ACGAATCTCACCCGTTTGAAC 58.859 47.619 0.00 0.00 32.03 3.18
328 329 1.466866 CGAGTTACGGAGATGCAACGA 60.467 52.381 9.83 0.00 38.46 3.85
329 330 0.914551 CGAGTTACGGAGATGCAACG 59.085 55.000 0.00 0.00 38.46 4.10
340 341 7.230466 ACCAATATAAAAAGAGCGAGTTACG 57.770 36.000 0.00 0.00 45.66 3.18
384 391 1.552799 TTTCAGATGCAGAGGCCGGA 61.553 55.000 5.05 0.00 40.13 5.14
386 393 0.107993 TCTTTCAGATGCAGAGGCCG 60.108 55.000 0.00 0.00 40.13 6.13
387 394 1.948145 CATCTTTCAGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.69 5.19
411 418 4.216731 GCTCTTTTTAATAATACGGCCGC 58.783 43.478 28.58 0.00 0.00 6.53
451 458 1.201921 GCGAGTTGTACTTGGATTGCG 60.202 52.381 0.00 0.00 30.15 4.85
466 473 1.808945 CTCTTTGCTCCATTTGCGAGT 59.191 47.619 0.00 0.00 0.00 4.18
494 502 9.509956 TGTGGCTATTAGTTTACTGTGTTTTAT 57.490 29.630 0.00 0.00 0.00 1.40
495 503 8.905660 TGTGGCTATTAGTTTACTGTGTTTTA 57.094 30.769 0.00 0.00 0.00 1.52
496 504 7.811117 TGTGGCTATTAGTTTACTGTGTTTT 57.189 32.000 0.00 0.00 0.00 2.43
497 505 7.255346 GGTTGTGGCTATTAGTTTACTGTGTTT 60.255 37.037 0.00 0.00 0.00 2.83
498 506 6.206048 GGTTGTGGCTATTAGTTTACTGTGTT 59.794 38.462 0.00 0.00 0.00 3.32
499 507 5.704053 GGTTGTGGCTATTAGTTTACTGTGT 59.296 40.000 0.00 0.00 0.00 3.72
502 510 4.331717 CCGGTTGTGGCTATTAGTTTACTG 59.668 45.833 0.00 0.00 0.00 2.74
516 524 2.943033 CCTATTTTCTAGCCGGTTGTGG 59.057 50.000 1.90 0.00 0.00 4.17
524 532 7.631717 AGTCATTTTGTCCTATTTTCTAGCC 57.368 36.000 0.00 0.00 0.00 3.93
529 537 9.406828 GGTGTTTAGTCATTTTGTCCTATTTTC 57.593 33.333 0.00 0.00 0.00 2.29
530 538 9.143155 AGGTGTTTAGTCATTTTGTCCTATTTT 57.857 29.630 0.00 0.00 0.00 1.82
532 540 9.975218 ATAGGTGTTTAGTCATTTTGTCCTATT 57.025 29.630 0.00 0.00 32.75 1.73
533 541 9.614792 GATAGGTGTTTAGTCATTTTGTCCTAT 57.385 33.333 0.00 0.00 37.28 2.57
534 542 8.044908 GGATAGGTGTTTAGTCATTTTGTCCTA 58.955 37.037 0.00 0.00 0.00 2.94
536 544 6.657541 TGGATAGGTGTTTAGTCATTTTGTCC 59.342 38.462 0.00 0.00 0.00 4.02
537 545 7.681939 TGGATAGGTGTTTAGTCATTTTGTC 57.318 36.000 0.00 0.00 0.00 3.18
538 546 9.920946 ATATGGATAGGTGTTTAGTCATTTTGT 57.079 29.630 0.00 0.00 0.00 2.83
573 581 9.613428 CACCTGGTAGACAAAAATTGATATAGA 57.387 33.333 0.00 0.00 0.00 1.98
574 582 9.396022 ACACCTGGTAGACAAAAATTGATATAG 57.604 33.333 0.00 0.00 0.00 1.31
576 584 9.747898 TTACACCTGGTAGACAAAAATTGATAT 57.252 29.630 0.00 0.00 32.49 1.63
577 585 9.747898 ATTACACCTGGTAGACAAAAATTGATA 57.252 29.630 0.00 0.00 32.49 2.15
578 586 8.522830 CATTACACCTGGTAGACAAAAATTGAT 58.477 33.333 0.00 0.00 32.49 2.57
579 587 7.504238 ACATTACACCTGGTAGACAAAAATTGA 59.496 33.333 0.00 0.00 32.49 2.57
580 588 7.657336 ACATTACACCTGGTAGACAAAAATTG 58.343 34.615 0.00 0.00 32.49 2.32
581 589 7.833285 ACATTACACCTGGTAGACAAAAATT 57.167 32.000 0.00 0.00 32.49 1.82
582 590 7.833285 AACATTACACCTGGTAGACAAAAAT 57.167 32.000 0.00 0.00 32.49 1.82
583 591 7.648039 AAACATTACACCTGGTAGACAAAAA 57.352 32.000 0.00 0.00 32.49 1.94
584 592 7.648039 AAAACATTACACCTGGTAGACAAAA 57.352 32.000 0.00 0.00 32.49 2.44
585 593 8.749026 TTAAAACATTACACCTGGTAGACAAA 57.251 30.769 0.00 0.00 32.49 2.83
586 594 8.788806 CATTAAAACATTACACCTGGTAGACAA 58.211 33.333 0.00 0.00 32.49 3.18
587 595 8.158132 TCATTAAAACATTACACCTGGTAGACA 58.842 33.333 0.00 0.00 32.49 3.41
588 596 8.448615 GTCATTAAAACATTACACCTGGTAGAC 58.551 37.037 0.00 0.00 32.49 2.59
589 597 8.380099 AGTCATTAAAACATTACACCTGGTAGA 58.620 33.333 0.00 0.00 32.49 2.59
590 598 8.561738 AGTCATTAAAACATTACACCTGGTAG 57.438 34.615 0.00 0.00 32.49 3.18
592 600 8.927675 TTAGTCATTAAAACATTACACCTGGT 57.072 30.769 0.00 0.00 0.00 4.00
593 601 9.620660 GTTTAGTCATTAAAACATTACACCTGG 57.379 33.333 0.00 0.00 35.98 4.45
601 609 9.541143 CAACCCTTGTTTAGTCATTAAAACATT 57.459 29.630 1.88 0.00 43.14 2.71
602 610 7.655732 GCAACCCTTGTTTAGTCATTAAAACAT 59.344 33.333 1.88 0.00 43.14 2.71
603 611 6.981559 GCAACCCTTGTTTAGTCATTAAAACA 59.018 34.615 0.00 0.00 42.27 2.83
604 612 6.981559 TGCAACCCTTGTTTAGTCATTAAAAC 59.018 34.615 0.00 0.00 33.22 2.43
605 613 7.113658 TGCAACCCTTGTTTAGTCATTAAAA 57.886 32.000 0.00 0.00 33.22 1.52
606 614 6.716934 TGCAACCCTTGTTTAGTCATTAAA 57.283 33.333 0.00 0.00 30.42 1.52
607 615 6.716934 TTGCAACCCTTGTTTAGTCATTAA 57.283 33.333 0.00 0.00 30.42 1.40
608 616 6.686630 CATTGCAACCCTTGTTTAGTCATTA 58.313 36.000 0.00 0.00 30.42 1.90
609 617 5.540911 CATTGCAACCCTTGTTTAGTCATT 58.459 37.500 0.00 0.00 30.42 2.57
610 618 4.561326 GCATTGCAACCCTTGTTTAGTCAT 60.561 41.667 0.00 0.00 30.42 3.06
611 619 3.243704 GCATTGCAACCCTTGTTTAGTCA 60.244 43.478 0.00 0.00 30.42 3.41
612 620 3.243704 TGCATTGCAACCCTTGTTTAGTC 60.244 43.478 9.33 0.00 34.76 2.59
613 621 2.697751 TGCATTGCAACCCTTGTTTAGT 59.302 40.909 9.33 0.00 34.76 2.24
614 622 3.059166 GTGCATTGCAACCCTTGTTTAG 58.941 45.455 13.94 0.00 41.47 1.85
615 623 2.697751 AGTGCATTGCAACCCTTGTTTA 59.302 40.909 13.94 0.00 41.47 2.01
616 624 1.485895 AGTGCATTGCAACCCTTGTTT 59.514 42.857 13.94 0.00 41.47 2.83
617 625 1.122227 AGTGCATTGCAACCCTTGTT 58.878 45.000 13.94 0.00 41.47 2.83
618 626 1.993956 TAGTGCATTGCAACCCTTGT 58.006 45.000 13.94 0.00 41.47 3.16
619 627 3.696051 AGTATAGTGCATTGCAACCCTTG 59.304 43.478 13.94 0.00 41.47 3.61
620 628 3.947834 GAGTATAGTGCATTGCAACCCTT 59.052 43.478 13.94 0.00 41.47 3.95
621 629 3.054434 TGAGTATAGTGCATTGCAACCCT 60.054 43.478 13.94 9.11 41.47 4.34
622 630 3.278574 TGAGTATAGTGCATTGCAACCC 58.721 45.455 13.94 0.85 41.47 4.11
623 631 4.201950 CCTTGAGTATAGTGCATTGCAACC 60.202 45.833 13.94 1.65 41.47 3.77
624 632 4.731773 GCCTTGAGTATAGTGCATTGCAAC 60.732 45.833 13.94 8.00 41.47 4.17
625 633 3.378112 GCCTTGAGTATAGTGCATTGCAA 59.622 43.478 13.94 0.00 41.47 4.08
626 634 2.945008 GCCTTGAGTATAGTGCATTGCA 59.055 45.455 7.38 7.38 35.60 4.08
627 635 3.209410 AGCCTTGAGTATAGTGCATTGC 58.791 45.455 0.46 0.46 0.00 3.56
628 636 6.925610 TTAAGCCTTGAGTATAGTGCATTG 57.074 37.500 0.00 0.00 0.00 2.82
629 637 7.512992 AGATTAAGCCTTGAGTATAGTGCATT 58.487 34.615 0.00 0.00 0.00 3.56
630 638 7.072263 AGATTAAGCCTTGAGTATAGTGCAT 57.928 36.000 0.00 0.00 0.00 3.96
631 639 6.485830 AGATTAAGCCTTGAGTATAGTGCA 57.514 37.500 0.00 0.00 0.00 4.57
639 647 9.469097 AGTATCGATATAGATTAAGCCTTGAGT 57.531 33.333 8.66 0.00 32.39 3.41
640 648 9.944663 GAGTATCGATATAGATTAAGCCTTGAG 57.055 37.037 8.66 0.00 32.39 3.02
641 649 9.688091 AGAGTATCGATATAGATTAAGCCTTGA 57.312 33.333 8.66 0.00 42.67 3.02
698 706 4.750098 CACTCGCCCGTCAAAAAGATATAT 59.250 41.667 0.00 0.00 0.00 0.86
699 707 4.116961 CACTCGCCCGTCAAAAAGATATA 58.883 43.478 0.00 0.00 0.00 0.86
700 708 2.936498 CACTCGCCCGTCAAAAAGATAT 59.064 45.455 0.00 0.00 0.00 1.63
701 709 2.343101 CACTCGCCCGTCAAAAAGATA 58.657 47.619 0.00 0.00 0.00 1.98
702 710 1.156736 CACTCGCCCGTCAAAAAGAT 58.843 50.000 0.00 0.00 0.00 2.40
703 711 0.882927 CCACTCGCCCGTCAAAAAGA 60.883 55.000 0.00 0.00 0.00 2.52
704 712 1.164041 ACCACTCGCCCGTCAAAAAG 61.164 55.000 0.00 0.00 0.00 2.27
705 713 1.153127 ACCACTCGCCCGTCAAAAA 60.153 52.632 0.00 0.00 0.00 1.94
706 714 1.595929 GACCACTCGCCCGTCAAAA 60.596 57.895 0.00 0.00 0.00 2.44
707 715 2.029964 GACCACTCGCCCGTCAAA 59.970 61.111 0.00 0.00 0.00 2.69
708 716 1.180456 TAAGACCACTCGCCCGTCAA 61.180 55.000 0.00 0.00 0.00 3.18
709 717 1.592400 CTAAGACCACTCGCCCGTCA 61.592 60.000 0.00 0.00 0.00 4.35
710 718 1.139095 CTAAGACCACTCGCCCGTC 59.861 63.158 0.00 0.00 0.00 4.79
711 719 0.683504 ATCTAAGACCACTCGCCCGT 60.684 55.000 0.00 0.00 0.00 5.28
712 720 0.460311 AATCTAAGACCACTCGCCCG 59.540 55.000 0.00 0.00 0.00 6.13
713 721 2.694109 ACTAATCTAAGACCACTCGCCC 59.306 50.000 0.00 0.00 0.00 6.13
714 722 4.113354 CAACTAATCTAAGACCACTCGCC 58.887 47.826 0.00 0.00 0.00 5.54
715 723 4.113354 CCAACTAATCTAAGACCACTCGC 58.887 47.826 0.00 0.00 0.00 5.03
716 724 4.113354 GCCAACTAATCTAAGACCACTCG 58.887 47.826 0.00 0.00 0.00 4.18
717 725 5.086104 TGCCAACTAATCTAAGACCACTC 57.914 43.478 0.00 0.00 0.00 3.51
718 726 4.532521 ACTGCCAACTAATCTAAGACCACT 59.467 41.667 0.00 0.00 0.00 4.00
719 727 4.833390 ACTGCCAACTAATCTAAGACCAC 58.167 43.478 0.00 0.00 0.00 4.16
720 728 5.248477 AGAACTGCCAACTAATCTAAGACCA 59.752 40.000 0.00 0.00 0.00 4.02
721 729 5.735766 AGAACTGCCAACTAATCTAAGACC 58.264 41.667 0.00 0.00 0.00 3.85
722 730 8.251721 TCTTAGAACTGCCAACTAATCTAAGAC 58.748 37.037 15.39 0.00 44.91 3.01
723 731 8.251721 GTCTTAGAACTGCCAACTAATCTAAGA 58.748 37.037 15.39 15.39 46.32 2.10
724 732 7.492994 GGTCTTAGAACTGCCAACTAATCTAAG 59.507 40.741 12.05 12.05 43.69 2.18
725 733 7.038587 TGGTCTTAGAACTGCCAACTAATCTAA 60.039 37.037 0.00 0.00 0.00 2.10
726 734 6.439375 TGGTCTTAGAACTGCCAACTAATCTA 59.561 38.462 0.00 0.00 0.00 1.98
727 735 5.248477 TGGTCTTAGAACTGCCAACTAATCT 59.752 40.000 0.00 0.00 0.00 2.40
728 736 5.351740 GTGGTCTTAGAACTGCCAACTAATC 59.648 44.000 0.00 0.00 0.00 1.75
729 737 5.013183 AGTGGTCTTAGAACTGCCAACTAAT 59.987 40.000 0.00 0.00 0.00 1.73
770 778 7.015195 ACTGCCTAAGCCTTTATTTTTGAGAAA 59.985 33.333 0.00 0.00 38.69 2.52
771 779 6.493458 ACTGCCTAAGCCTTTATTTTTGAGAA 59.507 34.615 0.00 0.00 38.69 2.87
772 780 6.010219 ACTGCCTAAGCCTTTATTTTTGAGA 58.990 36.000 0.00 0.00 38.69 3.27
774 782 6.664428 AACTGCCTAAGCCTTTATTTTTGA 57.336 33.333 0.00 0.00 38.69 2.69
775 783 6.531594 GCTAACTGCCTAAGCCTTTATTTTTG 59.468 38.462 0.00 0.00 38.69 2.44
776 784 6.631016 GCTAACTGCCTAAGCCTTTATTTTT 58.369 36.000 0.00 0.00 38.69 1.94
777 785 6.208988 GCTAACTGCCTAAGCCTTTATTTT 57.791 37.500 0.00 0.00 38.69 1.82
778 786 5.836821 GCTAACTGCCTAAGCCTTTATTT 57.163 39.130 0.00 0.00 38.69 1.40
921 929 1.326548 GCGTGGAAAAGCCGTATGTAG 59.673 52.381 0.00 0.00 40.66 2.74
923 931 0.604243 TGCGTGGAAAAGCCGTATGT 60.604 50.000 0.00 0.00 40.66 2.29
925 933 2.319136 TATGCGTGGAAAAGCCGTAT 57.681 45.000 0.00 0.00 40.66 3.06
934 942 9.850628 GTACTAGAACAATATATATGCGTGGAA 57.149 33.333 0.00 0.00 0.00 3.53
981 989 0.541764 GGAATGAGGTGGGTTTGGCA 60.542 55.000 0.00 0.00 0.00 4.92
1004 1012 1.729484 GCGGCTTGGAAGTTTTCGC 60.729 57.895 0.00 0.00 35.12 4.70
1005 1013 1.081442 GGCGGCTTGGAAGTTTTCG 60.081 57.895 0.00 0.00 0.00 3.46
1025 1033 2.962253 GGACGCAGCCATCGCTAC 60.962 66.667 0.00 0.00 46.25 3.58
1026 1034 4.569023 CGGACGCAGCCATCGCTA 62.569 66.667 0.00 0.00 46.25 4.26
1072 1080 4.925861 GCGGCATGGAGGAGGAGC 62.926 72.222 0.00 0.00 0.00 4.70
1094 1102 1.528542 CTCCTCCATGGGCAGCATG 60.529 63.158 13.02 0.00 36.20 4.06
1096 1104 4.119363 GCTCCTCCATGGGCAGCA 62.119 66.667 19.78 0.00 36.20 4.41
1097 1105 4.891037 GGCTCCTCCATGGGCAGC 62.891 72.222 13.02 15.89 34.87 5.25
1098 1106 4.559063 CGGCTCCTCCATGGGCAG 62.559 72.222 13.02 4.06 34.87 4.85
1100 1108 4.864334 CACGGCTCCTCCATGGGC 62.864 72.222 13.02 7.06 36.20 5.36
1101 1109 4.181010 CCACGGCTCCTCCATGGG 62.181 72.222 13.02 2.26 44.36 4.00
1103 1111 4.864334 GGCCACGGCTCCTCCATG 62.864 72.222 8.20 0.00 41.60 3.66
1204 1212 4.208686 GGCTCGAACGCCTCCGAT 62.209 66.667 8.39 0.00 46.63 4.18
1406 1423 4.704965 TGCTGTAATCTACTCTAGCTCGA 58.295 43.478 0.00 0.00 32.66 4.04
1415 1438 3.833732 TCGGATCCTGCTGTAATCTACT 58.166 45.455 10.75 0.00 0.00 2.57
1442 1465 2.224042 TGGATCGGACGGATTGATCAAG 60.224 50.000 14.54 2.96 40.17 3.02
1496 1519 5.730296 ATAATCAGCTAGTCTGCCGTAAT 57.270 39.130 8.72 0.00 42.56 1.89
1541 1568 7.359595 TGAAACATTTACAAATGAGAACGAGG 58.640 34.615 18.95 0.00 46.72 4.63
1553 1608 7.599245 ACCGAAACAACTTTGAAACATTTACAA 59.401 29.630 0.00 0.00 0.00 2.41
1554 1609 7.091443 ACCGAAACAACTTTGAAACATTTACA 58.909 30.769 0.00 0.00 0.00 2.41
1557 1612 6.647067 TCAACCGAAACAACTTTGAAACATTT 59.353 30.769 0.00 0.00 0.00 2.32
1558 1613 6.159988 TCAACCGAAACAACTTTGAAACATT 58.840 32.000 0.00 0.00 0.00 2.71
1561 1616 5.802956 TGATCAACCGAAACAACTTTGAAAC 59.197 36.000 0.00 0.00 30.34 2.78
1573 1628 2.093306 ACAGCGATGATCAACCGAAA 57.907 45.000 20.47 0.00 0.00 3.46
1580 1635 2.674357 CACATGTCAACAGCGATGATCA 59.326 45.455 8.12 0.00 0.00 2.92
1612 1667 4.870426 ACAGTTGATCGATGTTACCATCAC 59.130 41.667 0.54 0.00 46.54 3.06
1639 1694 2.414691 GGCCGATTTGACAGAGAAAAGC 60.415 50.000 0.00 0.00 0.00 3.51
1700 1755 5.964887 TTATATTAAACGCACGTACCCAC 57.035 39.130 0.00 0.00 0.00 4.61
1704 1759 5.402270 ACGGGATTATATTAAACGCACGTAC 59.598 40.000 0.00 0.00 0.00 3.67
1732 1787 6.581542 CAGCTTTAATTCAGCAGTTTCTTCAG 59.418 38.462 11.20 0.00 39.99 3.02
1757 1812 2.051345 CACAAAACGTCAGCGCCC 60.051 61.111 2.29 0.00 42.83 6.13
1758 1813 0.928451 GAACACAAAACGTCAGCGCC 60.928 55.000 2.29 0.00 42.83 6.53
1781 1837 0.320374 TGAGACCGGCGTTCATTTCT 59.680 50.000 7.31 0.00 0.00 2.52
1799 1855 1.482593 AGTAAGCCGGGAGAATCAGTG 59.517 52.381 2.18 0.00 36.25 3.66
1800 1856 1.482593 CAGTAAGCCGGGAGAATCAGT 59.517 52.381 2.18 0.00 36.25 3.41
1801 1857 1.757118 TCAGTAAGCCGGGAGAATCAG 59.243 52.381 2.18 0.00 36.25 2.90
1807 1863 2.434702 ACCTTAATCAGTAAGCCGGGAG 59.565 50.000 2.18 0.00 38.34 4.30
1808 1864 2.433239 GACCTTAATCAGTAAGCCGGGA 59.567 50.000 2.18 0.00 38.34 5.14
1809 1865 2.169769 TGACCTTAATCAGTAAGCCGGG 59.830 50.000 2.18 0.00 38.34 5.73
1810 1866 3.536956 TGACCTTAATCAGTAAGCCGG 57.463 47.619 0.00 0.00 38.34 6.13
1811 1867 6.147821 CCATAATGACCTTAATCAGTAAGCCG 59.852 42.308 0.00 0.00 38.34 5.52
1812 1868 6.431234 CCCATAATGACCTTAATCAGTAAGCC 59.569 42.308 0.00 0.00 38.34 4.35
1813 1869 6.998673 ACCCATAATGACCTTAATCAGTAAGC 59.001 38.462 0.00 0.00 38.34 3.09
1814 1870 7.993183 ACACCCATAATGACCTTAATCAGTAAG 59.007 37.037 0.00 0.00 39.25 2.34
1815 1871 7.773224 CACACCCATAATGACCTTAATCAGTAA 59.227 37.037 0.00 0.00 33.27 2.24
1816 1872 7.279615 CACACCCATAATGACCTTAATCAGTA 58.720 38.462 0.00 0.00 33.99 2.74
1817 1873 6.122277 CACACCCATAATGACCTTAATCAGT 58.878 40.000 0.00 0.00 30.46 3.41
1818 1874 5.009010 GCACACCCATAATGACCTTAATCAG 59.991 44.000 0.00 0.00 30.46 2.90
1827 1883 4.519540 AAAACTGCACACCCATAATGAC 57.480 40.909 0.00 0.00 0.00 3.06
1864 1920 9.838339 CTCTGACCCATAATATAAGAGTGTTTT 57.162 33.333 0.00 0.00 0.00 2.43
1865 1921 8.432805 CCTCTGACCCATAATATAAGAGTGTTT 58.567 37.037 0.00 0.00 0.00 2.83
1866 1922 7.016661 CCCTCTGACCCATAATATAAGAGTGTT 59.983 40.741 0.00 0.00 0.00 3.32
1867 1923 6.498651 CCCTCTGACCCATAATATAAGAGTGT 59.501 42.308 0.00 0.00 0.00 3.55
1868 1924 6.726299 TCCCTCTGACCCATAATATAAGAGTG 59.274 42.308 0.00 0.00 0.00 3.51
1869 1925 6.875469 TCCCTCTGACCCATAATATAAGAGT 58.125 40.000 0.00 0.00 0.00 3.24
1870 1926 6.957020 ACTCCCTCTGACCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
1871 1927 6.875469 ACTCCCTCTGACCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
1872 1928 7.896496 ACTACTCCCTCTGACCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
1873 1929 7.776745 ACTACTCCCTCTGACCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
1874 1930 7.358255 ACTACTCCCTCTGACCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
1875 1931 6.234404 ACTACTCCCTCTGACCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
1876 1932 5.681494 ACTACTCCCTCTGACCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
1877 1933 4.561254 ACTACTCCCTCTGACCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
1878 1934 5.681494 ATACTACTCCCTCTGACCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
1879 1935 6.989709 ATATACTACTCCCTCTGACCCATA 57.010 41.667 0.00 0.00 0.00 2.74
1880 1936 5.887480 ATATACTACTCCCTCTGACCCAT 57.113 43.478 0.00 0.00 0.00 4.00
1881 1937 6.507843 TCATATATACTACTCCCTCTGACCCA 59.492 42.308 0.00 0.00 0.00 4.51
1882 1938 6.971340 TCATATATACTACTCCCTCTGACCC 58.029 44.000 0.00 0.00 0.00 4.46
1883 1939 7.889073 TGTTCATATATACTACTCCCTCTGACC 59.111 40.741 0.00 0.00 0.00 4.02
1884 1940 8.732531 GTGTTCATATATACTACTCCCTCTGAC 58.267 40.741 0.00 0.00 0.00 3.51
1885 1941 7.606839 CGTGTTCATATATACTACTCCCTCTGA 59.393 40.741 0.00 0.00 0.00 3.27
1886 1942 7.626664 GCGTGTTCATATATACTACTCCCTCTG 60.627 44.444 0.00 0.00 0.00 3.35
1887 1943 6.374894 GCGTGTTCATATATACTACTCCCTCT 59.625 42.308 0.00 0.00 0.00 3.69
1888 1944 6.150641 TGCGTGTTCATATATACTACTCCCTC 59.849 42.308 0.00 0.00 0.00 4.30
1889 1945 6.008331 TGCGTGTTCATATATACTACTCCCT 58.992 40.000 0.00 0.00 0.00 4.20
1890 1946 6.263516 TGCGTGTTCATATATACTACTCCC 57.736 41.667 0.00 0.00 0.00 4.30
1891 1947 7.535997 TCATGCGTGTTCATATATACTACTCC 58.464 38.462 5.68 0.00 0.00 3.85
1892 1948 8.451748 TCTCATGCGTGTTCATATATACTACTC 58.548 37.037 5.68 0.00 0.00 2.59
1893 1949 8.336801 TCTCATGCGTGTTCATATATACTACT 57.663 34.615 5.68 0.00 0.00 2.57
1894 1950 8.451748 TCTCTCATGCGTGTTCATATATACTAC 58.548 37.037 5.68 0.00 0.00 2.73
1895 1951 8.561738 TCTCTCATGCGTGTTCATATATACTA 57.438 34.615 5.68 0.00 0.00 1.82
1896 1952 7.454260 TCTCTCATGCGTGTTCATATATACT 57.546 36.000 5.68 0.00 0.00 2.12
1897 1953 8.428536 GTTTCTCTCATGCGTGTTCATATATAC 58.571 37.037 5.68 0.00 0.00 1.47
1898 1954 8.360390 AGTTTCTCTCATGCGTGTTCATATATA 58.640 33.333 5.68 0.00 0.00 0.86
1899 1955 7.212976 AGTTTCTCTCATGCGTGTTCATATAT 58.787 34.615 5.68 0.00 0.00 0.86
1900 1956 6.573434 AGTTTCTCTCATGCGTGTTCATATA 58.427 36.000 5.68 0.00 0.00 0.86
1901 1957 5.423015 AGTTTCTCTCATGCGTGTTCATAT 58.577 37.500 5.68 0.00 0.00 1.78
1906 1962 2.808543 GGAAGTTTCTCTCATGCGTGTT 59.191 45.455 5.68 0.00 0.00 3.32
1912 1968 4.904241 ACTCTTGGGAAGTTTCTCTCATG 58.096 43.478 0.00 0.00 0.00 3.07
1921 1977 7.800300 ATACTCTCTTAACTCTTGGGAAGTT 57.200 36.000 0.00 0.00 0.00 2.66
1922 1978 9.138596 GATATACTCTCTTAACTCTTGGGAAGT 57.861 37.037 0.00 0.00 0.00 3.01
1923 1979 9.362151 AGATATACTCTCTTAACTCTTGGGAAG 57.638 37.037 0.00 0.00 0.00 3.46
1924 1980 9.716556 AAGATATACTCTCTTAACTCTTGGGAA 57.283 33.333 0.00 0.00 31.03 3.97
1950 2006 5.427157 TGGAGCACCCTGTATATTTTCTGTA 59.573 40.000 0.00 0.00 35.38 2.74
1951 2007 4.227300 TGGAGCACCCTGTATATTTTCTGT 59.773 41.667 0.00 0.00 35.38 3.41
1952 2008 4.576463 GTGGAGCACCCTGTATATTTTCTG 59.424 45.833 0.00 0.00 35.38 3.02
1953 2009 4.683400 CGTGGAGCACCCTGTATATTTTCT 60.683 45.833 0.00 0.00 35.38 2.52
1954 2010 3.560068 CGTGGAGCACCCTGTATATTTTC 59.440 47.826 0.00 0.00 35.38 2.29
1955 2011 3.541632 CGTGGAGCACCCTGTATATTTT 58.458 45.455 0.00 0.00 35.38 1.82
1956 2012 3.194005 CGTGGAGCACCCTGTATATTT 57.806 47.619 0.00 0.00 35.38 1.40
1957 2013 2.910688 CGTGGAGCACCCTGTATATT 57.089 50.000 0.00 0.00 35.38 1.28
1970 2026 0.966920 ATTCGTATAGGGGCGTGGAG 59.033 55.000 0.00 0.00 0.00 3.86
1971 2027 1.888512 GTATTCGTATAGGGGCGTGGA 59.111 52.381 0.00 0.00 0.00 4.02
1972 2028 1.401931 CGTATTCGTATAGGGGCGTGG 60.402 57.143 0.00 0.00 0.00 4.94
1973 2029 1.401931 CCGTATTCGTATAGGGGCGTG 60.402 57.143 11.70 0.00 38.20 5.34
1974 2030 0.883833 CCGTATTCGTATAGGGGCGT 59.116 55.000 11.70 0.00 38.20 5.68
1975 2031 0.457337 GCCGTATTCGTATAGGGGCG 60.457 60.000 18.66 3.59 40.86 6.13
1976 2032 0.604578 TGCCGTATTCGTATAGGGGC 59.395 55.000 18.66 16.16 40.86 5.80
1977 2033 1.614903 TGTGCCGTATTCGTATAGGGG 59.385 52.381 18.66 8.31 40.86 4.79
1978 2034 3.054878 GTTGTGCCGTATTCGTATAGGG 58.945 50.000 14.41 14.41 42.57 3.53
1979 2035 3.708890 TGTTGTGCCGTATTCGTATAGG 58.291 45.455 0.00 0.00 35.01 2.57
1980 2036 4.088071 CGATGTTGTGCCGTATTCGTATAG 59.912 45.833 0.00 0.00 35.01 1.31
1981 2037 3.976306 CGATGTTGTGCCGTATTCGTATA 59.024 43.478 0.00 0.00 35.01 1.47
1982 2038 2.792674 CGATGTTGTGCCGTATTCGTAT 59.207 45.455 0.00 0.00 35.01 3.06
1983 2039 2.186891 CGATGTTGTGCCGTATTCGTA 58.813 47.619 0.00 0.00 35.01 3.43
1984 2040 0.996462 CGATGTTGTGCCGTATTCGT 59.004 50.000 0.00 0.00 35.01 3.85
1985 2041 0.300491 CCGATGTTGTGCCGTATTCG 59.700 55.000 0.00 0.00 0.00 3.34
1986 2042 1.326548 GACCGATGTTGTGCCGTATTC 59.673 52.381 0.00 0.00 0.00 1.75
1987 2043 1.338294 TGACCGATGTTGTGCCGTATT 60.338 47.619 0.00 0.00 0.00 1.89
1988 2044 0.248012 TGACCGATGTTGTGCCGTAT 59.752 50.000 0.00 0.00 0.00 3.06
2045 2105 3.182152 AGGTTAGGTGGTAGTGCTCATT 58.818 45.455 0.00 0.00 0.00 2.57
2046 2106 2.834113 AGGTTAGGTGGTAGTGCTCAT 58.166 47.619 0.00 0.00 0.00 2.90
2047 2107 2.301870 CAAGGTTAGGTGGTAGTGCTCA 59.698 50.000 0.00 0.00 0.00 4.26
2048 2108 2.302157 ACAAGGTTAGGTGGTAGTGCTC 59.698 50.000 0.00 0.00 0.00 4.26
2049 2109 2.038557 CACAAGGTTAGGTGGTAGTGCT 59.961 50.000 0.00 0.00 0.00 4.40
2051 2111 4.345859 TTCACAAGGTTAGGTGGTAGTG 57.654 45.455 0.00 0.00 35.74 2.74
2052 2112 4.745783 GCTTTCACAAGGTTAGGTGGTAGT 60.746 45.833 0.00 0.00 35.74 2.73
2053 2113 3.751698 GCTTTCACAAGGTTAGGTGGTAG 59.248 47.826 0.00 0.00 35.74 3.18
2054 2114 3.393278 AGCTTTCACAAGGTTAGGTGGTA 59.607 43.478 0.00 0.00 37.46 3.25
2078 2154 3.396260 TCTAGGACCTCAAAACCAACG 57.604 47.619 0.00 0.00 0.00 4.10
2082 2167 3.522553 CACGATCTAGGACCTCAAAACC 58.477 50.000 0.00 0.00 0.00 3.27
2084 2169 2.832129 AGCACGATCTAGGACCTCAAAA 59.168 45.455 0.00 0.00 0.00 2.44
2096 2181 2.363788 TAGCAAAACGAGCACGATCT 57.636 45.000 11.40 2.26 42.66 2.75
2129 2218 7.526608 TCAACGAATAAAACCTGCTAAATCAG 58.473 34.615 0.00 0.00 0.00 2.90
2130 2219 7.441890 TCAACGAATAAAACCTGCTAAATCA 57.558 32.000 0.00 0.00 0.00 2.57
2131 2220 7.806014 TGTTCAACGAATAAAACCTGCTAAATC 59.194 33.333 0.00 0.00 0.00 2.17
2132 2221 7.653647 TGTTCAACGAATAAAACCTGCTAAAT 58.346 30.769 0.00 0.00 0.00 1.40
2133 2222 7.028926 TGTTCAACGAATAAAACCTGCTAAA 57.971 32.000 0.00 0.00 0.00 1.85
2134 2223 6.621316 TGTTCAACGAATAAAACCTGCTAA 57.379 33.333 0.00 0.00 0.00 3.09
2135 2224 6.293735 CCTTGTTCAACGAATAAAACCTGCTA 60.294 38.462 0.00 0.00 0.00 3.49
2136 2225 5.507315 CCTTGTTCAACGAATAAAACCTGCT 60.507 40.000 0.00 0.00 0.00 4.24
2137 2226 4.679654 CCTTGTTCAACGAATAAAACCTGC 59.320 41.667 0.00 0.00 0.00 4.85
2138 2227 4.679654 GCCTTGTTCAACGAATAAAACCTG 59.320 41.667 0.00 0.00 0.00 4.00
2139 2228 4.583073 AGCCTTGTTCAACGAATAAAACCT 59.417 37.500 0.00 0.00 0.00 3.50
2140 2229 4.679654 CAGCCTTGTTCAACGAATAAAACC 59.320 41.667 0.00 0.00 0.00 3.27
2141 2230 5.516090 TCAGCCTTGTTCAACGAATAAAAC 58.484 37.500 0.00 0.00 0.00 2.43
2142 2231 5.759506 TCAGCCTTGTTCAACGAATAAAA 57.240 34.783 0.00 0.00 0.00 1.52
2143 2232 5.957842 ATCAGCCTTGTTCAACGAATAAA 57.042 34.783 0.00 0.00 0.00 1.40
2144 2233 5.957842 AATCAGCCTTGTTCAACGAATAA 57.042 34.783 0.00 0.00 0.00 1.40
2145 2234 5.957842 AAATCAGCCTTGTTCAACGAATA 57.042 34.783 0.00 0.00 0.00 1.75
2146 2235 4.853924 AAATCAGCCTTGTTCAACGAAT 57.146 36.364 0.00 0.00 0.00 3.34
2147 2236 4.320202 GCTAAATCAGCCTTGTTCAACGAA 60.320 41.667 0.00 0.00 45.23 3.85
2148 2237 3.188460 GCTAAATCAGCCTTGTTCAACGA 59.812 43.478 0.00 0.00 45.23 3.85
2149 2238 3.492313 GCTAAATCAGCCTTGTTCAACG 58.508 45.455 0.00 0.00 45.23 4.10
2185 2274 4.293648 TGTGTGCTGGTCGACGGG 62.294 66.667 9.92 5.76 0.00 5.28
2243 2360 6.493115 AGCAGCTGACAGACAAGAGTATATAT 59.507 38.462 20.43 0.00 0.00 0.86
2244 2361 5.830457 AGCAGCTGACAGACAAGAGTATATA 59.170 40.000 20.43 0.00 0.00 0.86
2245 2362 4.648762 AGCAGCTGACAGACAAGAGTATAT 59.351 41.667 20.43 0.00 0.00 0.86
2246 2363 4.019858 AGCAGCTGACAGACAAGAGTATA 58.980 43.478 20.43 0.00 0.00 1.47
2264 2381 2.479566 TTTCTAGGGTGAGCAAGCAG 57.520 50.000 0.00 0.00 0.00 4.24
2290 2414 3.467803 ACAGAGGTTTCAGTGCTGTAAC 58.532 45.455 11.57 11.57 37.98 2.50
2297 2427 3.068732 TGACTCTGACAGAGGTTTCAGTG 59.931 47.826 31.03 8.87 46.45 3.66
2387 2520 1.227823 TGTGGCCGTCAGACAAAGG 60.228 57.895 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.