>input_sequence_76579
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-----------------------------------------------CCCAGCGAAAACTTCCAAGCCGCCAGTAGCGAT
GGCTGCGTCCGCCCCTCTCGCCAGGGTCGCGCTCCTCCTGCTCCTCCTCCATGCCGCCCACCATGCTGCCCATGGAGGAG
CCGTGGCCAGGCTTGCTGGCACGGGCGGAGCGAGGATGGCATCACCGGAGGGGTATGCGCCGGTGCAGACCGCGGTGTAC
CGGCCGGCGGCA---------TCGGAGGCGTTCGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCCCGGCGGGGAA
CAACGGCTCGTCATGCGTGGACACCCAGTGCTGCTACGGCATCAACTGCAACCTCCCCGGCAAGCCGTTCGGGACCTGCG
CCTTCACCCCACGCACCTGCGGCTGCGGCGCCAACAACTGCACGGCTGCACCCGCCCCGCCTT------CGAGCTAGAGT
AGATTACAGCAGGATCCGATTGATCTTGATCAATCCGTCCGATCCACTTACGAGTTTGCATCGCCGGATCGATGCATAAT
TACGGCAGACTAGCTGATTATTATTTGATTAATAATCAAAA----TCC-------------------CTCG---------
TT------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G144700
TGCACTATATATCAGAAAAGATAATATTAACATTACACGTCAATACCCCTAGAAAACATTACACGTTAATACAGAAAAAT
TGATTTCACGGTGATATTAGGTAGAATATACTCTAATTAACATGTTACATTGAAAAGGATATTAATTGTATTGCACGTTA
ATATCAGGAAAGAGGAAAGATACCGATTGCACGTTGATATTAGGTAATATATAATTACGTGGTTAGCATCGAAGTTTATA
TTAGGATGGTATTAACAACACACTAAACATGTTTAGCCCTAAAACACCGGAGCAACATAGATAATTGATACGTTCAAACG
GGTGAGATTCGTTGCATCTCCGTAACTCGCTCTTTTTATATTGGTTTTTT------AAAGGAGGGTTACCTCCGGCCTCT
GCATCTGAAAGATGCATGCGGCCGTATTATTAAAAAGAGCAAACAAGTAACAAGGTCCGCAATCCAAGTACAACTCGC-A
AATGGAGCAAAGAGAAAAAAAATAAAACACAGTAAACTAATAGCCACAACCGGCTAGAAAATAGGACAAAATGACTAAAC
ACCTATCCATATAGGGGTAATCTATATCAATTTTTGTCTACCAGGTGTAATGTTTTAATGACTAAACAAGGGTTGCAATG
CACTATACTCAAGGCTTAATCTATATCGATACTCTATATATATGTAAATCTTGAGTGGTCTTAGAATATATCTTTTTGAC
GGGCGAGTGGTCTTAGATTAGTTGGCAGTTCTAAGACCACTCAAGGCTTAGGCAGTTTTTCTCAAAAATAAAGGCTTAGG
CAGTTAGCCGCAAAAAAAAAAAGATTAGTTGGCAGTTTATTTATTTAATTTTTTTATGGGTAGTTGGCAGTTTATTTTGT
TTGATGTGTTTGCGTTTCCTTTCATTACATCGTAAGAAAAAAAAACTTCTACATACGGCTTTTCCACGCATATATATTGT
TCTAGTACGTGGGATGGTGTTGCCATCTTGCCAAACCCACCTCATTCCCCAGCGAAAACTTCCAAGCCGCCAGTAGCGAT
GGCTGCGTCCGCCCCTCTCGCCAGGGTCGCGCTCCTCCTGCTCCTCCTCCATGCCGCCCACCATGCTGCCCATGGAGGAG
CCGTGGCCAGGCTTGCTGGCACGGGCGGAGCGAGGATGGCATCACCGGAGGGGTATGCGCCGGTGCAGACCGCGGTGTAC
CGGCCGGCGGCA---------TCGGAGGCGTTCGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCCCGGCGGGGAA
CAACGGCTCGTCATGCGTGGACACCCAGTGCTGCTACGGCATCAACTGCAACCTCCCCGGCAAGCCGTTCGGGACCTGCG
CCTTCACCCCACGCACCTGCGGCTGCGGCGCCAACAACTGCACGGCTGCACCCGCCCCGCCTT------CGAGCTAGAGT
AGATTACAGCAGGATCCGATTGATCTTGATCAATCCGTCCGATCCACTTACGAGTTTGCATCGCCGGATCGATGCATAAT
TACGGCAGACTAGCTGATTATTATTTGATTAATAATCAAAA----TCC-------------------CTCG---------
TTCTCATTTGTAAATGTTTCAAAGTTGTTTCGGTTGATCATCGCTGTTGACATGTGATTGAAAGTAGTGATGGTAACATC
GATCAACTGTTACGCTTTTCTCTGTCAAATCGGCCGATCGATCGGTTCCTGGAACAATTAATCAGTACTGGGTAGTGGGT
ACGTGCGTTTAATATAATCCCGTGCTCTGAAGAAACTGCTGAATTAAAGCTGGGCGCTGACGTTTTGTGT-TCCGGAGAA
ATGAACGCCGGTCTCACTGATTCTCCCGGCTTACTGATTAAGGTCATTATGGGTGTGCAGTTTTTTTTACTTAACGTTAA
AAACACTCTTATATTATGGGTCAGAGGGAGTAGTATATATGAACACGCATGAGAGAAACTTCCCAAGAGTTAAGAGAGTA
TATCTTACAGAAAATATACAGGGTGCTCCACGCCCCTATACGAATACGGCACAACATCGGTCATCGGCGGC----TGTTG
TGTTGGCTCTTAGTCTTGGAAGACAATGAGCACT----------------ACCACCTAACCTTGTGAAAGCTACG-----
----TTGGTTTTGAGGTCCTAGA----TCGTGCTCGTTTTGCTAATTGAGATTTTGGCTGATTTAGCAGGTTTTATTCGT
TGAACAAGGCTGATTTAGCAAGTTAACTGATCGCCCGTCGACCA----------------------------GCACACAG
AAATCGATGTTACCTGCCCTGCCGGCCCGCAAAGGATAGATATATACTCTTGTCTGTCAGCTGCTT-------GCTCACC
CTAGAAAAAATTAG------TTACAGCACTGAAACCTCTGTCAGAGTCAGAGCCCGACACGACAAAGC---AGCATCAAA
GTGAGTCTGAAACCACGAGATACTATCAGGAGGAGGTAGCCTTTGTCTGACGGCCACACGCACACGCTGTTCTCTGTCTA
GACTAGACTA---GAGAGGTCAGGCAGTTCAGTTGAGCCTTGGTCGTCTGACTGAAGATGAAGGGCCAGCCAAGCCAGAC
AGTGTTGAGCAGACAAGTGGTTCGGGATGCGATGCGATGCTGG
>chr5D_1
TGCACTATATATTGGAAAAGATAATATTAACATTACACGTCAATACCCCTA-AAAACATTACACGTTAAGATAAAAAAAT
TGATTTCATGGTGATATTAGGTAGAATAG-----AATTAACATGTTATATTGAAATGGATATTAATTGTATTGCACGTTA
ATATCAGGAAAGAGGAAAGATACTGATTGCACATTGATATTAGGTAATATATAATTACGTGGTTAGCATCGAAGTTTATA
TTAGGATGGTATTAACGACACGCTAAACATGTTTAGCCCTAAAACACCGGAGCAACATAGATCATTGATACATTCAAACG
GGTGAGATCTGTTGCATCTCTGTAACTCGCTCTTTTTATATTGATTTTTTTCTTGAAAAGAAGGATTACCCCTCGCCTCT
GCATCTGAAAGATGCATACGGCGATATTATTAAAAAGAGCAAACAAGTAACAAGGTCTGCAATCCAAGTACAGCTCACAA
AATGGAGCAAAGAGAAAAAAA------CATAGTAAACTCATAGGCACAACCAGTGTTTAGTCATT---------------
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---------------TTATCCTATAGAGAGTATCGATATAGATTAAGC-CTTGAGTGGTCTTAGA---------------
-----------------TTAGTTGGCAGTTCTAAGACCACTCAAGGCTTAGGCAGTTACCCG------------------
--------------AAAAAAAAGATTAGTTGGCAGTTTATTTATTTAATTTTTTTATGGGTAGTTGGCAGTTTATTTTGT
TTGATGTGTTTGCG-TTCCTTCCATTTCATCGTAAGG-AAAAAAACTTGTGCGTACGGCTTGTCCACGCATATATATTG-
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>chr5D_914
AAAAACGTCGCACACGAGCTATTG--------------------------------------------------------
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-----------------------------------------------------------------ACCCATATATATTGT
TCTAGTACCTGGGATGGCGTTGCCATCTCGCCAAACCCACCTCATTCCCCAAGGAAAACTTCCAAGCCGCCAAAGGCGAT
GGCTGCGTCCGCCCCTCTTGCCGGGGTCGCGCTCCTCCTCCTCCTCCTCCATGCCGCCCATGAC------------GGAG
GCATGGCCGGGCTTGCTAGCACGGGCGGAGCGAGGATGGCATCATCGGAGGGGTACGCGCCGGTGCAGACCGTGGTGTAC
CGGTCGGCGGCGTTGGAGGCGTCGGAGGCGTTCGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCCCGGCGGGGAA
CAACGGCTCGTCGTGCGTGGACACGCAGTGCTGCTACGGCATCAACTGCAACCTCCCCGGCAAGCCGTTCGGGACCTGCG
CCTTCACCCCGCGCACCTGCGGCTGCGGCGCCAACAACTGCACGGCTGCACCCGCCCCGCCGCCGCCTACGAGCTAGCTT
ATGGA--------ATCCGATTGATTTTGATCGATTGGTCCGATCCATTTACGAGTATGGT----CGGATCGATGCATACT
TACCGCAGGCTAGCTGATTATTA-TTGATTAATAATCAGAA----TCGTTTTCTTTCACATCGTATGATCTATCGTCCAT
TTCTCATGCATCCATCTTTCAAAGTTG-TTCGGTA---------TGTTGGCATGTGATTGAAAGTA-TGATGGTAACATC
GATCAACTGTTACACTTTTCTCTGTCA--------GATCGATCGGTTCCTGGAACAATTAATCAGTACTGG-------CT
ACGTGCGTTTAATATAATCCCGTGCTTTGAAGAAACTGCTGAATTAAAGCTCAGCGCTGACGTTTTGTGTCTCCGGGGAA
ATGAACGCCGGTCTT-------------------TGATTAAGATCATTATAGGCGCGCAGTTTTTCTTA-----------
-------------------------------------TGTGGACACGAATGAGAG---------------------AGTA
TATCT---------------------------------------TACGGCACAACATCGGTCATCGGCGGCCGGCTGTTG
TGCTGACTCTTGGTCTTGGAAGACGTAATGAGTAGTAGCACCACCACCACACCACCTAACCTTGTGAAAGCTATGTACGT
TAGTTTCGGTTTGAGGTCCTCGATCGGTCGTGCTCGTTTTGCTAATGGATATTTG-------------------------
-------GGCTGATTTAGCAAGTTAACTGATCGTCCGTCGACCAAACGCACGTGAGTGCACTCGATAGATCAGCACACAG
AAATCGATGTTACCTGCCCTGCCGGCCCGCAAAGGATAG----ATACTCTTGTCTGTCAGATGAGATGTAGCAGCTCACC
CTAGAAAAAATTACTAGTTATTACAGTACTGAAACCTCTGTCAGAGTCAGAGCCCGACACGACAAAGC---AGCATCAAA
GTGAGTCTGAAACCACGAGATCCTATCAGGAGGAGGTAG-CTTTGTCTGACGGCCACACGCACACGCTGTTTTCTGTCTA
GACTAGACTAGAGGAGAGGTCAGGCAGTTCAGTTGAGCCTTGGTCGTCTGGCTGAAGATGAAGGGCCAGCCAAGCCAGAC
AGTGTCGAGCAGACAAGTGGTTCGGGATGCGATGCGATGCTGG
>chr5B_1236
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---------------------------------------------------ATGGGGTGCCGGTGCTGCCCGGCGGGGAA
CAACGGCTCGTCATGCGTGGACACGCAGTGCTGCTACGGCATCAACTGCAACCTCCCCGGCAAACCGTTCGGGACCTGCG
CCTTCACCCCACGCACCTGCGGCTGCGGCGCCAACAACTGCACGGCTGCACCCGGCCCGCCTG------CGAGCTA--GT
AGATTATAGCAGGATCCGATTGATTTTGATGAATCCGTTCGATCCACTTACGAGTTTGCATCGCCGGATCGATGCATACT
TACGGCAGACTAGCTGATTATTATTTGATTAATAATCAAAATCTCTCGTTTTCTTTCACAACTATCGCTCG---------
TTCTCATGCGTCCATCTTTCAAAGTTG-TTCGGCCGATCATCGCTGTTGACATGGGACTGAAAGTA-TGATGGTAACATC
GATCAGCTGTTACACTTTCCTCTGTCAA------------ATCGGTTCCTGGAACAATTAATCAGTA----GTACTGGCT
ACGTGTGTTTAATATAATCCCGTGCTTTGAAGAAACTGCTGAATTAAAGCTCAGCGCTGACGTTTTGTGTCTCCGGGGAA
ATGAACGCCGGTCTTGTTGATTAAGATCA---------------------GGGTGCGTAGTTTTTCTTA-----------
-------------------------------------TATGGACACGAATGAGAGACT------------------AGTA
TATCT---------------------------------------TACGGCACAACATCGGTCATCGGCGGC----TGCTG
TGCTGACTCTTGGTCTTGGAAGA--TAATGAGTAGTAACAGCACCACCACACTACCTAACCTTGTGAAAGCTATGTCCGT
TAGTTTTGGTTTGAGGTCCTCGATCGGTCCTGCTCGTTTTGCTAATGGAGATTTG-------------------------
-------GGCTGATTTAGCAAGTTAACCGATCGTCCGTCGACCAAACGCACGTGAGTGCACTCGATAGACCAGCACGCAG
AAATCGATGTTACCTGCCCTGCCGGCCCGCAAAGGATAG----ATACTCTTGTCTGTCAGATGAGATGTAGCAGCTCACC
CTAGAAAAAAT---TAGTTATTACAGTACTGAAACCTCTGTCAGAGTCAGAGCCCGACACGACAAAGCAGTAGCATCAAA
GTGAGTCTGAAACTACGAGATACTATCAGGAGGAGGTAG-CTTTGTCTGACGGCCACACGCACACGCTGTTTTCTGTCTA
GACTAGACAAGAGGAGAGGTCAGGCAGTTCAGTTCACCCTTG---GTCTGACTGAAGATGAAGGGCTAGT-----CAGAC
AGTTTTGAGCAGACAAGTGGTTCGGGATGCGATGCAATGCTGG
>SNPs
---------------------------------------------------S-----------------S-S-S------
--------S-------------------SSSSSS-------------S-------S------------------------
-----------------------S--------S-----------------------------------------------
----------------S----S----------------------------------------S--------S--------
--------SS----------S----------------------S----------------S---S-----S-SS------
-----------------S----SS---------------------------------S--------------S---S---
---------------------SSSSSS--S--------S----S-------S-SSSSS-SSS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---SS-----SS--SSS--S-----S--SS-SSS----------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS----------------------------------------SSS-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS------------------------------------------------------------------
--------------S------S----S---------SS----------S-S-S--------S------------------
--------S--------S----------S----------------------SS-------------------SSS-----
------------------S---S----------------S--------------------SS-SSSSSSSSSSSSS----
S-S-----S--------S--------------------------S----------S----------------S-------
---S-------S--------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------S--------------S--
------S-----------------S-----------------------------------------------------S-
-----------------------------------------------S--------------------------------
-------SS--SS--S-----------S------S-------------------------------S-------------
-------------S--------------SSSSSSS---------------------------------------S---S-
--------------------------S------------------------SS-----------------------S---
--------------SSS-----SSSSSSSSSSSS--------S------------S---------S---SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----S--------SSSSSSSSSSSSSSSSSSSS----
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
--S--S-----S------------SSSSS-SSSS---------------------------------------S------
------S-S-----------S-------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------------------S----------------------------------------------
---------------------------------------SSSS-----------------S--SSS--------------
-------------S------------S-----------------------------------------------------
---------------------------------------S-------------------------------S--------
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>forward_730
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----------------------------------------------------------------------TCTTTTTGAC
GGGCGAGTGG----------------------------------------------------------------------
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>reverse_2044
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-------------------------------------------ATACGGCACAACATCGGTCA-----------------
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