Multiple sequence alignment - TraesCS5A01G143200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G143200 chr5A 100.000 3761 0 0 1 3761 317249407 317245647 0.000000e+00 6946.0
1 TraesCS5A01G143200 chr5A 86.579 380 44 6 442 814 632364283 632363904 2.700000e-111 412.0
2 TraesCS5A01G143200 chr5D 92.855 2995 118 37 810 3750 238065771 238068723 0.000000e+00 4257.0
3 TraesCS5A01G143200 chr5D 91.533 437 24 2 1 425 238065306 238065741 1.160000e-164 590.0
4 TraesCS5A01G143200 chr5D 76.471 153 22 10 1236 1381 384348078 384347933 1.870000e-08 71.3
5 TraesCS5A01G143200 chr5B 91.648 2730 132 44 810 3483 267779716 267777027 0.000000e+00 3690.0
6 TraesCS5A01G143200 chr5B 92.051 390 24 6 1 386 267780161 267779775 3.300000e-150 542.0
7 TraesCS5A01G143200 chr5B 89.811 265 10 4 3501 3761 267776741 267776490 1.300000e-84 324.0
8 TraesCS5A01G143200 chr5B 76.471 153 22 10 1236 1381 461141441 461141296 1.870000e-08 71.3
9 TraesCS5A01G143200 chr1A 87.273 385 39 9 439 814 303736505 303736122 7.460000e-117 431.0
10 TraesCS5A01G143200 chr6A 87.701 374 39 6 442 810 578048027 578048398 2.680000e-116 429.0
11 TraesCS5A01G143200 chr1D 87.206 383 42 6 442 817 17995575 17995193 2.680000e-116 429.0
12 TraesCS5A01G143200 chr2A 87.105 380 41 6 443 814 516109660 516109281 1.250000e-114 424.0
13 TraesCS5A01G143200 chr2A 77.912 498 85 18 1237 1726 54882383 54882863 1.710000e-73 287.0
14 TraesCS5A01G143200 chr2A 77.686 484 87 18 1249 1726 54955465 54954997 3.700000e-70 276.0
15 TraesCS5A01G143200 chrUn 87.037 378 42 7 442 812 103311559 103311936 1.620000e-113 420.0
16 TraesCS5A01G143200 chrUn 86.719 384 42 8 439 813 24426004 24426387 5.810000e-113 418.0
17 TraesCS5A01G143200 chr7D 86.753 385 41 8 439 814 218475239 218475622 1.620000e-113 420.0
18 TraesCS5A01G143200 chr7D 86.082 388 45 8 439 817 66411367 66410980 3.500000e-110 409.0
19 TraesCS5A01G143200 chr2B 79.710 483 79 13 1249 1726 85177897 85177429 7.790000e-87 331.0
20 TraesCS5A01G143200 chr2B 79.200 500 79 17 1237 1726 85074019 85074503 1.300000e-84 324.0
21 TraesCS5A01G143200 chr2B 87.500 48 6 0 1246 1293 83955340 83955293 5.250000e-04 56.5
22 TraesCS5A01G143200 chr2D 79.630 486 76 15 1246 1726 54317534 54318001 1.010000e-85 327.0
23 TraesCS5A01G143200 chr2D 78.807 486 80 19 1249 1726 54487966 54487496 4.720000e-79 305.0
24 TraesCS5A01G143200 chr2D 85.965 57 8 0 1237 1293 52647005 52647061 1.130000e-05 62.1
25 TraesCS5A01G143200 chr2D 85.000 60 9 0 1234 1293 52852077 52852136 1.130000e-05 62.1
26 TraesCS5A01G143200 chr4B 83.969 262 38 4 1472 1731 380653771 380654030 8.070000e-62 248.0
27 TraesCS5A01G143200 chr7B 89.796 49 5 0 1245 1293 316006655 316006607 3.140000e-06 63.9
28 TraesCS5A01G143200 chr7A 89.796 49 5 0 1245 1293 410727038 410727086 3.140000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G143200 chr5A 317245647 317249407 3760 True 6946.000000 6946 100.000 1 3761 1 chr5A.!!$R1 3760
1 TraesCS5A01G143200 chr5D 238065306 238068723 3417 False 2423.500000 4257 92.194 1 3750 2 chr5D.!!$F1 3749
2 TraesCS5A01G143200 chr5B 267776490 267780161 3671 True 1518.666667 3690 91.170 1 3761 3 chr5B.!!$R2 3760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 633 0.032813 CAATGCCCCTCCATGAACCT 60.033 55.0 0.0 0.0 0.00 3.50 F
625 642 0.182537 TCCATGAACCTATTGGCCCG 59.817 55.0 0.0 0.0 36.63 6.13 F
2034 2098 0.321122 CTGACCAGGAACAGGAGCAC 60.321 60.0 0.0 0.0 37.04 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 2365 0.318614 GAGGCTGCGAGTAGATGAGC 60.319 60.0 0.0 0.0 0.0 4.26 R
2358 2422 0.599060 TGTCGATGTTCACGTAGCCA 59.401 50.0 0.0 0.0 0.0 4.75 R
3030 3105 0.310854 GCTTTGGTTTCCGGTGACAG 59.689 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.592223 AGCGAACGAAGGAAGGAGG 59.408 57.895 0.00 0.00 0.00 4.30
25 26 3.689002 GAAGGAAGGAGGCAGCGGG 62.689 68.421 0.00 0.00 0.00 6.13
161 162 2.939103 CACCATTCCTGCTTGCTACTAC 59.061 50.000 0.00 0.00 0.00 2.73
194 199 8.897752 CCAAAAGAAAAGAAGAGAAGAGAGAAA 58.102 33.333 0.00 0.00 0.00 2.52
232 237 0.319083 TGCGTTGGTTATCCACGACT 59.681 50.000 14.85 0.00 44.22 4.18
322 327 1.334869 CAGATTAGCCATTTGCCCGTC 59.665 52.381 0.00 0.00 42.71 4.79
327 332 2.700773 GCCATTTGCCCGTCTCACC 61.701 63.158 0.00 0.00 0.00 4.02
338 343 4.373116 TCTCACCTTCACCGCGGC 62.373 66.667 28.58 0.00 0.00 6.53
353 358 1.082756 CGGCGAGAAACTTGTGCAC 60.083 57.895 10.75 10.75 0.00 4.57
395 412 1.008538 CCTGTGTTTTGCGCTCCAC 60.009 57.895 9.73 10.43 0.00 4.02
425 442 2.906389 TCTGGTGTGAATCTAGGCTTGT 59.094 45.455 0.00 0.00 0.00 3.16
426 443 3.055819 TCTGGTGTGAATCTAGGCTTGTC 60.056 47.826 0.00 0.00 0.00 3.18
431 448 5.360144 GGTGTGAATCTAGGCTTGTCTAGTA 59.640 44.000 8.83 0.00 38.25 1.82
432 449 6.460399 GGTGTGAATCTAGGCTTGTCTAGTAG 60.460 46.154 8.83 0.00 38.25 2.57
434 451 7.282675 GTGTGAATCTAGGCTTGTCTAGTAGTA 59.717 40.741 8.83 0.00 38.25 1.82
435 452 7.499563 TGTGAATCTAGGCTTGTCTAGTAGTAG 59.500 40.741 8.83 0.00 38.25 2.57
437 454 7.716123 TGAATCTAGGCTTGTCTAGTAGTAGTC 59.284 40.741 8.83 0.00 38.25 2.59
438 455 6.811634 TCTAGGCTTGTCTAGTAGTAGTCT 57.188 41.667 8.83 3.57 38.25 3.24
439 456 7.197901 TCTAGGCTTGTCTAGTAGTAGTCTT 57.802 40.000 8.83 0.00 38.25 3.01
440 457 7.631933 TCTAGGCTTGTCTAGTAGTAGTCTTT 58.368 38.462 8.83 0.00 38.25 2.52
441 458 6.518208 AGGCTTGTCTAGTAGTAGTCTTTG 57.482 41.667 4.51 0.00 0.00 2.77
442 459 5.419471 AGGCTTGTCTAGTAGTAGTCTTTGG 59.581 44.000 4.51 0.00 0.00 3.28
443 460 5.394333 GGCTTGTCTAGTAGTAGTCTTTGGG 60.394 48.000 4.51 0.00 0.00 4.12
445 462 5.266709 TGTCTAGTAGTAGTCTTTGGGGT 57.733 43.478 4.51 0.00 0.00 4.95
446 463 5.014858 TGTCTAGTAGTAGTCTTTGGGGTG 58.985 45.833 4.51 0.00 0.00 4.61
447 464 5.015515 GTCTAGTAGTAGTCTTTGGGGTGT 58.984 45.833 4.51 0.00 0.00 4.16
448 465 5.479724 GTCTAGTAGTAGTCTTTGGGGTGTT 59.520 44.000 4.51 0.00 0.00 3.32
449 466 6.014755 GTCTAGTAGTAGTCTTTGGGGTGTTT 60.015 42.308 4.51 0.00 0.00 2.83
450 467 4.969484 AGTAGTAGTCTTTGGGGTGTTTG 58.031 43.478 0.00 0.00 0.00 2.93
451 468 3.945640 AGTAGTCTTTGGGGTGTTTGT 57.054 42.857 0.00 0.00 0.00 2.83
453 470 4.606210 AGTAGTCTTTGGGGTGTTTGTTT 58.394 39.130 0.00 0.00 0.00 2.83
454 471 5.020795 AGTAGTCTTTGGGGTGTTTGTTTT 58.979 37.500 0.00 0.00 0.00 2.43
455 472 4.465632 AGTCTTTGGGGTGTTTGTTTTC 57.534 40.909 0.00 0.00 0.00 2.29
456 473 3.835395 AGTCTTTGGGGTGTTTGTTTTCA 59.165 39.130 0.00 0.00 0.00 2.69
457 474 4.081697 AGTCTTTGGGGTGTTTGTTTTCAG 60.082 41.667 0.00 0.00 0.00 3.02
458 475 3.196685 TCTTTGGGGTGTTTGTTTTCAGG 59.803 43.478 0.00 0.00 0.00 3.86
459 476 1.490574 TGGGGTGTTTGTTTTCAGGG 58.509 50.000 0.00 0.00 0.00 4.45
460 477 1.007238 TGGGGTGTTTGTTTTCAGGGA 59.993 47.619 0.00 0.00 0.00 4.20
461 478 2.325484 GGGGTGTTTGTTTTCAGGGAT 58.675 47.619 0.00 0.00 0.00 3.85
462 479 3.117093 TGGGGTGTTTGTTTTCAGGGATA 60.117 43.478 0.00 0.00 0.00 2.59
463 480 4.093743 GGGGTGTTTGTTTTCAGGGATAT 58.906 43.478 0.00 0.00 0.00 1.63
464 481 4.530553 GGGGTGTTTGTTTTCAGGGATATT 59.469 41.667 0.00 0.00 0.00 1.28
465 482 5.012664 GGGGTGTTTGTTTTCAGGGATATTT 59.987 40.000 0.00 0.00 0.00 1.40
466 483 6.465178 GGGGTGTTTGTTTTCAGGGATATTTT 60.465 38.462 0.00 0.00 0.00 1.82
467 484 6.995686 GGGTGTTTGTTTTCAGGGATATTTTT 59.004 34.615 0.00 0.00 0.00 1.94
529 546 9.537192 TTTATCAAACAGAGAGACTTTTTACGA 57.463 29.630 0.00 0.00 28.96 3.43
530 547 9.537192 TTATCAAACAGAGAGACTTTTTACGAA 57.463 29.630 0.00 0.00 28.96 3.85
531 548 7.464830 TCAAACAGAGAGACTTTTTACGAAG 57.535 36.000 0.00 0.00 28.96 3.79
533 550 8.192774 TCAAACAGAGAGACTTTTTACGAAGTA 58.807 33.333 0.00 0.00 45.11 2.24
566 583 9.901172 TTATTTAGGACTAAATGAAGAAGACCC 57.099 33.333 21.55 0.00 43.36 4.46
567 584 7.569599 TTTAGGACTAAATGAAGAAGACCCT 57.430 36.000 0.57 0.00 30.78 4.34
568 585 5.685520 AGGACTAAATGAAGAAGACCCTC 57.314 43.478 0.00 0.00 0.00 4.30
569 586 5.094387 AGGACTAAATGAAGAAGACCCTCA 58.906 41.667 0.00 0.00 0.00 3.86
570 587 5.548056 AGGACTAAATGAAGAAGACCCTCAA 59.452 40.000 0.00 0.00 0.00 3.02
571 588 6.044404 AGGACTAAATGAAGAAGACCCTCAAA 59.956 38.462 0.00 0.00 0.00 2.69
572 589 6.372937 GGACTAAATGAAGAAGACCCTCAAAG 59.627 42.308 0.00 0.00 0.00 2.77
573 590 7.079451 ACTAAATGAAGAAGACCCTCAAAGA 57.921 36.000 0.00 0.00 0.00 2.52
574 591 7.518188 ACTAAATGAAGAAGACCCTCAAAGAA 58.482 34.615 0.00 0.00 0.00 2.52
575 592 7.998964 ACTAAATGAAGAAGACCCTCAAAGAAA 59.001 33.333 0.00 0.00 0.00 2.52
576 593 6.890979 AATGAAGAAGACCCTCAAAGAAAG 57.109 37.500 0.00 0.00 0.00 2.62
577 594 5.373812 TGAAGAAGACCCTCAAAGAAAGT 57.626 39.130 0.00 0.00 0.00 2.66
578 595 5.368989 TGAAGAAGACCCTCAAAGAAAGTC 58.631 41.667 0.00 0.00 0.00 3.01
579 596 5.131142 TGAAGAAGACCCTCAAAGAAAGTCT 59.869 40.000 0.00 0.00 39.42 3.24
581 598 6.007485 AGAAGACCCTCAAAGAAAGTCTTT 57.993 37.500 0.00 0.00 46.75 2.52
582 599 6.427441 AGAAGACCCTCAAAGAAAGTCTTTT 58.573 36.000 0.00 0.00 43.62 2.27
583 600 6.319911 AGAAGACCCTCAAAGAAAGTCTTTTG 59.680 38.462 0.00 0.00 43.62 2.44
584 601 5.755849 AGACCCTCAAAGAAAGTCTTTTGA 58.244 37.500 0.00 0.00 43.62 2.69
585 602 5.825151 AGACCCTCAAAGAAAGTCTTTTGAG 59.175 40.000 16.17 16.17 43.62 3.02
586 603 4.889995 ACCCTCAAAGAAAGTCTTTTGAGG 59.110 41.667 27.20 27.20 43.62 3.86
589 606 6.934048 CTCAAAGAAAGTCTTTTGAGGACT 57.066 37.500 15.59 0.00 43.62 3.85
597 614 5.836821 AGTCTTTTGAGGACTTTTCCAAC 57.163 39.130 0.00 0.00 45.72 3.77
598 615 5.261216 AGTCTTTTGAGGACTTTTCCAACA 58.739 37.500 0.00 0.00 45.72 3.33
599 616 5.714806 AGTCTTTTGAGGACTTTTCCAACAA 59.285 36.000 0.00 0.00 45.72 2.83
600 617 6.381133 AGTCTTTTGAGGACTTTTCCAACAAT 59.619 34.615 0.00 0.00 45.72 2.71
601 618 6.476706 GTCTTTTGAGGACTTTTCCAACAATG 59.523 38.462 0.00 0.00 45.72 2.82
602 619 4.320608 TTGAGGACTTTTCCAACAATGC 57.679 40.909 0.00 0.00 45.72 3.56
603 620 2.627699 TGAGGACTTTTCCAACAATGCC 59.372 45.455 0.00 0.00 45.72 4.40
604 621 1.970640 AGGACTTTTCCAACAATGCCC 59.029 47.619 0.00 0.00 45.72 5.36
605 622 1.001974 GGACTTTTCCAACAATGCCCC 59.998 52.381 0.00 0.00 42.30 5.80
606 623 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
607 624 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
608 625 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
609 626 0.189574 TTTCCAACAATGCCCCTCCA 59.810 50.000 0.00 0.00 0.00 3.86
610 627 0.413037 TTCCAACAATGCCCCTCCAT 59.587 50.000 0.00 0.00 0.00 3.41
611 628 0.324552 TCCAACAATGCCCCTCCATG 60.325 55.000 0.00 0.00 0.00 3.66
612 629 0.324552 CCAACAATGCCCCTCCATGA 60.325 55.000 0.00 0.00 0.00 3.07
613 630 1.559368 CAACAATGCCCCTCCATGAA 58.441 50.000 0.00 0.00 0.00 2.57
614 631 1.205417 CAACAATGCCCCTCCATGAAC 59.795 52.381 0.00 0.00 0.00 3.18
615 632 0.324645 ACAATGCCCCTCCATGAACC 60.325 55.000 0.00 0.00 0.00 3.62
616 633 0.032813 CAATGCCCCTCCATGAACCT 60.033 55.000 0.00 0.00 0.00 3.50
617 634 1.215173 CAATGCCCCTCCATGAACCTA 59.785 52.381 0.00 0.00 0.00 3.08
618 635 1.838611 ATGCCCCTCCATGAACCTAT 58.161 50.000 0.00 0.00 0.00 2.57
619 636 1.607225 TGCCCCTCCATGAACCTATT 58.393 50.000 0.00 0.00 0.00 1.73
620 637 1.215173 TGCCCCTCCATGAACCTATTG 59.785 52.381 0.00 0.00 0.00 1.90
621 638 1.479389 GCCCCTCCATGAACCTATTGG 60.479 57.143 0.00 0.00 39.83 3.16
622 639 1.479389 CCCCTCCATGAACCTATTGGC 60.479 57.143 0.00 0.00 36.63 4.52
623 640 1.479389 CCCTCCATGAACCTATTGGCC 60.479 57.143 0.00 0.00 36.63 5.36
624 641 1.479389 CCTCCATGAACCTATTGGCCC 60.479 57.143 0.00 0.00 36.63 5.80
625 642 0.182537 TCCATGAACCTATTGGCCCG 59.817 55.000 0.00 0.00 36.63 6.13
626 643 1.455383 CCATGAACCTATTGGCCCGC 61.455 60.000 0.00 0.00 36.63 6.13
627 644 1.152756 ATGAACCTATTGGCCCGCC 60.153 57.895 0.00 0.00 36.63 6.13
628 645 1.932156 ATGAACCTATTGGCCCGCCA 61.932 55.000 3.74 3.74 45.63 5.69
629 646 1.152756 GAACCTATTGGCCCGCCAT 60.153 57.895 9.70 2.78 46.64 4.40
630 647 1.152756 AACCTATTGGCCCGCCATC 60.153 57.895 9.70 0.00 46.64 3.51
631 648 2.282462 CCTATTGGCCCGCCATCC 60.282 66.667 9.70 0.00 46.64 3.51
632 649 2.282462 CTATTGGCCCGCCATCCC 60.282 66.667 9.70 0.00 46.64 3.85
633 650 3.099841 TATTGGCCCGCCATCCCA 61.100 61.111 9.70 0.00 46.64 4.37
634 651 2.430704 CTATTGGCCCGCCATCCCAT 62.431 60.000 9.70 2.50 46.64 4.00
635 652 2.711883 TATTGGCCCGCCATCCCATG 62.712 60.000 9.70 0.00 46.64 3.66
678 695 9.985730 ATTTTTCTGTATATTATGGGCAACATG 57.014 29.630 3.63 0.00 40.82 3.21
679 696 7.523293 TTTCTGTATATTATGGGCAACATGG 57.477 36.000 0.00 0.00 40.82 3.66
680 697 6.199557 TCTGTATATTATGGGCAACATGGT 57.800 37.500 0.00 0.00 40.82 3.55
681 698 6.237901 TCTGTATATTATGGGCAACATGGTC 58.762 40.000 0.00 0.00 40.82 4.02
682 699 5.946486 TGTATATTATGGGCAACATGGTCA 58.054 37.500 0.00 0.00 40.82 4.02
683 700 6.551085 TGTATATTATGGGCAACATGGTCAT 58.449 36.000 0.00 0.00 40.82 3.06
684 701 7.009550 TGTATATTATGGGCAACATGGTCATT 58.990 34.615 0.00 0.00 40.82 2.57
685 702 6.999705 ATATTATGGGCAACATGGTCATTT 57.000 33.333 0.00 0.00 40.82 2.32
686 703 9.019656 GTATATTATGGGCAACATGGTCATTTA 57.980 33.333 0.00 0.00 40.82 1.40
687 704 6.805016 ATTATGGGCAACATGGTCATTTAA 57.195 33.333 0.00 0.00 40.82 1.52
688 705 6.805016 TTATGGGCAACATGGTCATTTAAT 57.195 33.333 0.00 0.00 40.82 1.40
689 706 7.904558 TTATGGGCAACATGGTCATTTAATA 57.095 32.000 0.00 0.00 40.82 0.98
690 707 6.805016 ATGGGCAACATGGTCATTTAATAA 57.195 33.333 0.00 0.00 38.70 1.40
691 708 5.971763 TGGGCAACATGGTCATTTAATAAC 58.028 37.500 0.00 0.00 39.74 1.89
692 709 5.105146 TGGGCAACATGGTCATTTAATAACC 60.105 40.000 0.00 0.00 39.74 2.85
693 710 5.128663 GGGCAACATGGTCATTTAATAACCT 59.871 40.000 0.00 0.00 39.74 3.50
694 711 6.273071 GGCAACATGGTCATTTAATAACCTC 58.727 40.000 0.00 0.00 34.05 3.85
695 712 6.096846 GGCAACATGGTCATTTAATAACCTCT 59.903 38.462 0.00 0.00 34.05 3.69
696 713 7.284489 GGCAACATGGTCATTTAATAACCTCTA 59.716 37.037 0.00 0.00 34.05 2.43
697 714 8.345565 GCAACATGGTCATTTAATAACCTCTAG 58.654 37.037 0.00 0.00 34.05 2.43
698 715 9.613428 CAACATGGTCATTTAATAACCTCTAGA 57.387 33.333 0.00 0.00 34.05 2.43
702 719 9.853177 ATGGTCATTTAATAACCTCTAGAAAGG 57.147 33.333 0.00 0.00 42.55 3.11
703 720 8.272173 TGGTCATTTAATAACCTCTAGAAAGGG 58.728 37.037 0.00 0.00 41.04 3.95
704 721 8.491958 GGTCATTTAATAACCTCTAGAAAGGGA 58.508 37.037 3.61 0.00 41.04 4.20
705 722 9.327628 GTCATTTAATAACCTCTAGAAAGGGAC 57.672 37.037 3.61 0.00 41.04 4.46
713 730 9.954992 ATAACCTCTAGAAAGGGACTATAAACT 57.045 33.333 3.61 0.00 38.49 2.66
714 731 8.682297 AACCTCTAGAAAGGGACTATAAACTT 57.318 34.615 3.61 0.00 38.49 2.66
715 732 8.682297 ACCTCTAGAAAGGGACTATAAACTTT 57.318 34.615 3.61 0.00 38.49 2.66
716 733 9.113797 ACCTCTAGAAAGGGACTATAAACTTTT 57.886 33.333 3.61 0.00 38.49 2.27
717 734 9.961264 CCTCTAGAAAGGGACTATAAACTTTTT 57.039 33.333 0.00 0.00 38.49 1.94
749 766 5.397553 AAAAACAGGGAGACTTTTAGGGA 57.602 39.130 0.00 0.00 0.00 4.20
750 767 4.368565 AAACAGGGAGACTTTTAGGGAC 57.631 45.455 0.00 0.00 0.00 4.46
751 768 3.277416 ACAGGGAGACTTTTAGGGACT 57.723 47.619 0.00 0.00 46.37 3.85
752 769 4.415224 ACAGGGAGACTTTTAGGGACTA 57.585 45.455 0.00 0.00 41.75 2.59
753 770 4.354662 ACAGGGAGACTTTTAGGGACTAG 58.645 47.826 0.00 0.00 44.25 2.57
754 771 3.707102 CAGGGAGACTTTTAGGGACTAGG 59.293 52.174 0.00 0.00 44.25 3.02
755 772 3.039743 GGGAGACTTTTAGGGACTAGGG 58.960 54.545 0.00 0.00 44.25 3.53
756 773 3.310435 GGGAGACTTTTAGGGACTAGGGA 60.310 52.174 0.00 0.00 44.25 4.20
757 774 3.705579 GGAGACTTTTAGGGACTAGGGAC 59.294 52.174 0.00 0.00 44.25 4.46
758 775 4.572438 GGAGACTTTTAGGGACTAGGGACT 60.572 50.000 0.00 0.00 44.25 3.85
759 776 5.024785 GAGACTTTTAGGGACTAGGGACTT 58.975 45.833 0.00 0.00 44.25 3.01
760 777 5.413277 AGACTTTTAGGGACTAGGGACTTT 58.587 41.667 0.00 0.00 44.25 2.66
761 778 5.850583 AGACTTTTAGGGACTAGGGACTTTT 59.149 40.000 0.00 0.00 44.25 2.27
762 779 6.332103 AGACTTTTAGGGACTAGGGACTTTTT 59.668 38.462 0.00 0.00 44.25 1.94
763 780 7.515166 AGACTTTTAGGGACTAGGGACTTTTTA 59.485 37.037 0.00 0.00 44.25 1.52
764 781 7.687388 ACTTTTAGGGACTAGGGACTTTTTAG 58.313 38.462 0.00 0.00 44.25 1.85
765 782 7.294245 ACTTTTAGGGACTAGGGACTTTTTAGT 59.706 37.037 0.00 0.00 44.25 2.24
766 783 7.637548 TTTAGGGACTAGGGACTTTTTAGTT 57.362 36.000 0.00 0.00 44.25 2.24
767 784 5.500546 AGGGACTAGGGACTTTTTAGTTG 57.499 43.478 0.00 0.00 41.75 3.16
768 785 5.160386 AGGGACTAGGGACTTTTTAGTTGA 58.840 41.667 0.00 0.00 41.75 3.18
769 786 5.248705 AGGGACTAGGGACTTTTTAGTTGAG 59.751 44.000 0.00 0.00 41.75 3.02
770 787 5.247792 GGGACTAGGGACTTTTTAGTTGAGA 59.752 44.000 0.00 0.00 41.75 3.27
771 788 6.164876 GGACTAGGGACTTTTTAGTTGAGAC 58.835 44.000 0.00 0.00 41.75 3.36
772 789 6.014413 GGACTAGGGACTTTTTAGTTGAGACT 60.014 42.308 0.00 0.00 41.75 3.24
773 790 7.178097 GGACTAGGGACTTTTTAGTTGAGACTA 59.822 40.741 0.00 0.00 41.75 2.59
774 791 8.124808 ACTAGGGACTTTTTAGTTGAGACTAG 57.875 38.462 0.00 0.00 38.69 2.57
775 792 6.361768 AGGGACTTTTTAGTTGAGACTAGG 57.638 41.667 0.00 0.00 35.67 3.02
776 793 6.082707 AGGGACTTTTTAGTTGAGACTAGGA 58.917 40.000 0.00 0.00 35.67 2.94
777 794 6.557633 AGGGACTTTTTAGTTGAGACTAGGAA 59.442 38.462 0.00 0.00 35.67 3.36
778 795 7.072076 AGGGACTTTTTAGTTGAGACTAGGAAA 59.928 37.037 0.00 0.00 35.67 3.13
779 796 7.718314 GGGACTTTTTAGTTGAGACTAGGAAAA 59.282 37.037 0.00 0.00 39.43 2.29
780 797 8.775527 GGACTTTTTAGTTGAGACTAGGAAAAG 58.224 37.037 15.26 15.26 43.60 2.27
782 799 9.682465 ACTTTTTAGTTGAGACTAGGAAAAGTT 57.318 29.630 16.08 7.39 45.70 2.66
787 804 9.774413 TTAGTTGAGACTAGGAAAAGTTTTAGG 57.226 33.333 0.00 0.00 39.43 2.69
788 805 8.030913 AGTTGAGACTAGGAAAAGTTTTAGGA 57.969 34.615 0.00 0.00 33.32 2.94
789 806 7.932491 AGTTGAGACTAGGAAAAGTTTTAGGAC 59.068 37.037 0.00 0.00 33.32 3.85
790 807 7.613551 TGAGACTAGGAAAAGTTTTAGGACT 57.386 36.000 0.00 0.87 0.00 3.85
791 808 8.716674 TGAGACTAGGAAAAGTTTTAGGACTA 57.283 34.615 0.00 1.95 0.00 2.59
792 809 8.804204 TGAGACTAGGAAAAGTTTTAGGACTAG 58.196 37.037 18.01 18.01 34.41 2.57
793 810 8.953223 AGACTAGGAAAAGTTTTAGGACTAGA 57.047 34.615 22.43 2.43 32.98 2.43
794 811 9.027202 AGACTAGGAAAAGTTTTAGGACTAGAG 57.973 37.037 22.43 10.30 32.98 2.43
795 812 8.953223 ACTAGGAAAAGTTTTAGGACTAGAGA 57.047 34.615 22.43 1.73 32.98 3.10
796 813 9.377238 ACTAGGAAAAGTTTTAGGACTAGAGAA 57.623 33.333 22.43 1.49 32.98 2.87
797 814 9.642327 CTAGGAAAAGTTTTAGGACTAGAGAAC 57.358 37.037 16.24 0.00 30.86 3.01
798 815 7.451732 AGGAAAAGTTTTAGGACTAGAGAACC 58.548 38.462 0.00 0.00 0.00 3.62
799 816 7.072076 AGGAAAAGTTTTAGGACTAGAGAACCA 59.928 37.037 0.00 0.00 0.00 3.67
800 817 7.718314 GGAAAAGTTTTAGGACTAGAGAACCAA 59.282 37.037 0.00 0.00 0.00 3.67
801 818 9.117183 GAAAAGTTTTAGGACTAGAGAACCAAA 57.883 33.333 0.00 0.00 0.00 3.28
802 819 8.447924 AAAGTTTTAGGACTAGAGAACCAAAC 57.552 34.615 0.00 3.13 0.00 2.93
803 820 7.133133 AGTTTTAGGACTAGAGAACCAAACA 57.867 36.000 0.00 0.00 0.00 2.83
804 821 6.990939 AGTTTTAGGACTAGAGAACCAAACAC 59.009 38.462 0.00 0.00 0.00 3.32
805 822 5.479124 TTAGGACTAGAGAACCAAACACC 57.521 43.478 0.00 0.00 0.00 4.16
806 823 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
807 824 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
808 825 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
822 839 2.316108 CACCACCTTAGTTTTGCCCTT 58.684 47.619 0.00 0.00 0.00 3.95
825 842 3.117436 ACCACCTTAGTTTTGCCCTTGTA 60.117 43.478 0.00 0.00 0.00 2.41
870 899 5.330295 CACTGATGCAAGAAGTTCATTAGC 58.670 41.667 5.50 4.00 29.98 3.09
898 930 8.780846 TGGTATTTGAAAAGATATGTACGTGT 57.219 30.769 0.00 0.00 0.00 4.49
947 979 1.666234 GATTCTGCCCCTCGCGATC 60.666 63.158 10.36 0.00 42.08 3.69
965 997 2.677228 CTGATCCACCCACCACCC 59.323 66.667 0.00 0.00 0.00 4.61
991 1023 2.357517 ACTCGCAAGCGGACAAGG 60.358 61.111 14.98 1.60 40.25 3.61
999 1031 3.818787 GCGGACAAGGCATGGCAG 61.819 66.667 22.64 15.54 39.66 4.85
1009 1041 2.430465 AGGCATGGCAGCTATAAATCG 58.570 47.619 22.64 0.00 34.17 3.34
1010 1042 1.470098 GGCATGGCAGCTATAAATCGG 59.530 52.381 15.47 0.00 34.17 4.18
1012 1044 2.153645 CATGGCAGCTATAAATCGGCA 58.846 47.619 0.00 0.00 36.52 5.69
1046 1078 5.232463 TGCATCTGAAAAATTTCAAGCCTC 58.768 37.500 17.45 6.55 45.61 4.70
1047 1079 4.628766 GCATCTGAAAAATTTCAAGCCTCC 59.371 41.667 9.63 0.00 45.61 4.30
1048 1080 4.871933 TCTGAAAAATTTCAAGCCTCCC 57.128 40.909 9.63 0.00 45.61 4.30
1049 1081 4.482990 TCTGAAAAATTTCAAGCCTCCCT 58.517 39.130 9.63 0.00 45.61 4.20
1090 1126 5.065602 CACACAGCATTTCATATGCAGTAGT 59.934 40.000 11.81 8.00 46.77 2.73
1091 1127 6.258507 CACACAGCATTTCATATGCAGTAGTA 59.741 38.462 11.81 0.00 46.77 1.82
1092 1128 6.481313 ACACAGCATTTCATATGCAGTAGTAG 59.519 38.462 11.81 1.84 46.77 2.57
1104 1140 2.695666 GCAGTAGTAGCCATCTTCTCCA 59.304 50.000 0.00 0.00 0.00 3.86
1191 1235 1.488705 ATTCCGTTCCCACCTGCTCA 61.489 55.000 0.00 0.00 0.00 4.26
1194 1238 2.358737 GTTCCCACCTGCTCACCG 60.359 66.667 0.00 0.00 0.00 4.94
1220 1268 4.143333 CCAATGGGCAGCAGCAGC 62.143 66.667 2.65 0.00 44.61 5.25
1388 1438 1.420430 ACCTCCCCGGTACATACATG 58.580 55.000 0.00 0.00 46.73 3.21
1394 1444 3.638160 TCCCCGGTACATACATGACTAAC 59.362 47.826 0.00 0.00 0.00 2.34
1395 1445 3.640029 CCCCGGTACATACATGACTAACT 59.360 47.826 0.00 0.00 0.00 2.24
1396 1446 4.828939 CCCCGGTACATACATGACTAACTA 59.171 45.833 0.00 0.00 0.00 2.24
1397 1447 5.302568 CCCCGGTACATACATGACTAACTAA 59.697 44.000 0.00 0.00 0.00 2.24
1398 1448 6.014840 CCCCGGTACATACATGACTAACTAAT 60.015 42.308 0.00 0.00 0.00 1.73
1399 1449 7.088905 CCCGGTACATACATGACTAACTAATC 58.911 42.308 0.00 0.00 0.00 1.75
1400 1450 7.255695 CCCGGTACATACATGACTAACTAATCA 60.256 40.741 0.00 0.00 0.00 2.57
1401 1451 8.139350 CCGGTACATACATGACTAACTAATCAA 58.861 37.037 0.00 0.00 0.00 2.57
1402 1452 8.965172 CGGTACATACATGACTAACTAATCAAC 58.035 37.037 0.00 0.00 0.00 3.18
1416 1468 5.371526 ACTAATCAACAGCATCCATCGATT 58.628 37.500 0.00 0.00 0.00 3.34
1422 1474 5.821995 TCAACAGCATCCATCGATTAATCAA 59.178 36.000 15.57 0.00 0.00 2.57
1428 1480 5.106791 GCATCCATCGATTAATCAACTCCAG 60.107 44.000 15.57 1.90 0.00 3.86
1438 1490 2.222227 TCAACTCCAGCTCTGCTCTA 57.778 50.000 0.00 0.00 36.40 2.43
1444 1496 4.285863 ACTCCAGCTCTGCTCTAATTACT 58.714 43.478 0.00 0.00 36.40 2.24
1445 1497 4.099266 ACTCCAGCTCTGCTCTAATTACTG 59.901 45.833 0.00 0.00 36.40 2.74
1446 1498 3.386078 TCCAGCTCTGCTCTAATTACTGG 59.614 47.826 7.76 7.76 43.84 4.00
1447 1499 3.386078 CCAGCTCTGCTCTAATTACTGGA 59.614 47.826 8.19 0.00 45.00 3.86
1448 1500 4.501229 CCAGCTCTGCTCTAATTACTGGAG 60.501 50.000 8.19 3.07 45.00 3.86
1449 1501 4.099266 CAGCTCTGCTCTAATTACTGGAGT 59.901 45.833 0.00 0.00 36.40 3.85
1450 1502 5.300539 CAGCTCTGCTCTAATTACTGGAGTA 59.699 44.000 0.00 0.00 36.40 2.59
1451 1503 6.015519 CAGCTCTGCTCTAATTACTGGAGTAT 60.016 42.308 0.00 0.00 36.40 2.12
1655 1707 2.437343 CGTCAAGAAGGCGCTCGTC 61.437 63.158 7.64 5.50 39.16 4.20
1662 1714 1.511768 AAGGCGCTCGTCTTCTACC 59.488 57.895 7.64 0.00 34.67 3.18
1913 1973 8.068977 TGCATTTGAAATGTTTGTTTAATCAGC 58.931 29.630 18.12 0.73 0.00 4.26
1923 1983 8.682128 TGTTTGTTTAATCAGCGAATTAATCC 57.318 30.769 7.20 3.70 32.62 3.01
1927 1987 3.485463 AATCAGCGAATTAATCCGGGA 57.515 42.857 0.00 0.00 0.00 5.14
1945 2009 8.865590 ATCCGGGATTTTTATTTATTTGTTCG 57.134 30.769 2.97 0.00 0.00 3.95
1946 2010 8.053026 TCCGGGATTTTTATTTATTTGTTCGA 57.947 30.769 0.00 0.00 0.00 3.71
2034 2098 0.321122 CTGACCAGGAACAGGAGCAC 60.321 60.000 0.00 0.00 37.04 4.40
2070 2134 3.681835 ACCGTGGAGGACTCGCAC 61.682 66.667 0.00 9.49 45.00 5.34
2352 2416 9.982291 CAACAAACGCTACACTATAATAACAAT 57.018 29.630 0.00 0.00 0.00 2.71
2372 2436 5.414454 ACAATAACAATGGCTACGTGAACAT 59.586 36.000 0.00 0.00 0.00 2.71
2395 2459 1.977009 ACCATCGACGTGCCTCAGA 60.977 57.895 0.00 0.00 0.00 3.27
2406 2470 3.460995 CCTCAGATACCCGAGGCC 58.539 66.667 0.00 0.00 42.30 5.19
2442 2506 2.076863 GGCATGAATGGCGATAGGTAC 58.923 52.381 0.00 0.00 43.58 3.34
2463 2527 0.539051 ACGGCATGAAGAGGAAGAGG 59.461 55.000 0.00 0.00 0.00 3.69
2475 2539 2.925170 AAGAGGTCCAGCGGCAGT 60.925 61.111 1.45 0.00 0.00 4.40
2627 2691 3.089284 TGAACTTGCTGTAGATCGAGGA 58.911 45.455 0.00 0.00 0.00 3.71
2673 2737 0.662085 GGATCTAGCTTGCTTGCTGC 59.338 55.000 12.94 0.00 43.87 5.25
2683 2747 2.598632 GCTTGCTGCGTCGTGAACT 61.599 57.895 0.00 0.00 0.00 3.01
2684 2748 1.488957 CTTGCTGCGTCGTGAACTC 59.511 57.895 0.00 0.00 0.00 3.01
2687 2751 2.338620 CTGCGTCGTGAACTCCCA 59.661 61.111 0.00 0.00 0.00 4.37
2796 2861 8.910944 TCCAGTATTGTTACAAGATACTCCTAC 58.089 37.037 8.02 1.94 35.11 3.18
2826 2897 9.152327 TGATGATCATCATATATCCTAGGGTTC 57.848 37.037 30.27 4.02 42.42 3.62
2932 3003 4.739735 GCGTACCCAGCACTAGTTAATGAT 60.740 45.833 0.00 0.00 34.19 2.45
3030 3105 2.602211 CGCTCGAATGATCCATAGCATC 59.398 50.000 0.00 0.00 28.03 3.91
3060 3135 3.306710 GGAAACCAAAGCCCGAATCAAAT 60.307 43.478 0.00 0.00 0.00 2.32
3084 3159 4.876107 ACACATCATTTAACTAAGGCTCCG 59.124 41.667 0.00 0.00 0.00 4.63
3097 3172 2.513897 CTCCGGGGCCAATCGAAC 60.514 66.667 4.39 0.00 0.00 3.95
3123 3198 2.811317 GTCAGCTCGCAGGAACCG 60.811 66.667 0.00 0.00 0.00 4.44
3206 3281 2.549754 GCTCAACTGCTGCTGAACTTAA 59.450 45.455 13.69 0.00 0.00 1.85
3259 3336 4.202080 ACACGTTGCGAATTAGATAGGCTA 60.202 41.667 0.00 0.00 0.00 3.93
3266 3343 6.216569 TGCGAATTAGATAGGCTAGAAACTG 58.783 40.000 0.00 0.00 0.00 3.16
3372 3470 0.398696 AACCATCGTGTACCAAGCCA 59.601 50.000 0.00 0.00 0.00 4.75
3392 3490 5.819901 AGCCAAAGAAGATAATGCAGAGTAC 59.180 40.000 0.00 0.00 0.00 2.73
3613 3982 2.222931 CGCGCGATTAAAAGGTGATTGA 60.223 45.455 28.94 0.00 0.00 2.57
3617 3986 4.092821 CGCGATTAAAAGGTGATTGAGACA 59.907 41.667 0.00 0.00 0.00 3.41
3618 3987 5.220662 CGCGATTAAAAGGTGATTGAGACAT 60.221 40.000 0.00 0.00 0.00 3.06
3619 3988 6.019075 CGCGATTAAAAGGTGATTGAGACATA 60.019 38.462 0.00 0.00 0.00 2.29
3666 4035 1.576356 GTCCTAATCAGGCTTCAGCG 58.424 55.000 0.00 0.00 42.30 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.493973 CTCTGTCTCTCTGCCCGC 59.506 66.667 0.00 0.00 0.00 6.13
29 30 1.516892 CCTGCCTCTGTCTCTCTGC 59.483 63.158 0.00 0.00 0.00 4.26
32 33 1.217779 GTGCCTGCCTCTGTCTCTC 59.782 63.158 0.00 0.00 0.00 3.20
161 162 7.264373 TCTCTTCTTTTCTTTTGGTTAGCAG 57.736 36.000 0.00 0.00 0.00 4.24
205 210 3.632604 TGGATAACCAACGCAAAAGAACA 59.367 39.130 0.00 0.00 43.91 3.18
327 332 2.736995 TTTCTCGCCGCGGTGAAG 60.737 61.111 37.92 29.89 33.98 3.02
338 343 3.662713 CGATCAAGTGCACAAGTTTCTCG 60.663 47.826 21.04 13.14 0.00 4.04
395 412 5.490139 AGATTCACACCAGAATTAATGCG 57.510 39.130 0.00 0.00 38.30 4.73
397 414 6.769822 AGCCTAGATTCACACCAGAATTAATG 59.230 38.462 0.00 0.00 38.30 1.90
425 442 5.266709 ACACCCCAAAGACTACTACTAGA 57.733 43.478 0.00 0.00 0.00 2.43
426 443 5.997384 AACACCCCAAAGACTACTACTAG 57.003 43.478 0.00 0.00 0.00 2.57
431 448 3.945640 ACAAACACCCCAAAGACTACT 57.054 42.857 0.00 0.00 0.00 2.57
432 449 4.994907 AAACAAACACCCCAAAGACTAC 57.005 40.909 0.00 0.00 0.00 2.73
434 451 3.835395 TGAAAACAAACACCCCAAAGACT 59.165 39.130 0.00 0.00 0.00 3.24
435 452 4.180817 CTGAAAACAAACACCCCAAAGAC 58.819 43.478 0.00 0.00 0.00 3.01
437 454 3.530535 CCTGAAAACAAACACCCCAAAG 58.469 45.455 0.00 0.00 0.00 2.77
438 455 2.237392 CCCTGAAAACAAACACCCCAAA 59.763 45.455 0.00 0.00 0.00 3.28
439 456 1.834263 CCCTGAAAACAAACACCCCAA 59.166 47.619 0.00 0.00 0.00 4.12
440 457 1.007238 TCCCTGAAAACAAACACCCCA 59.993 47.619 0.00 0.00 0.00 4.96
441 458 1.783071 TCCCTGAAAACAAACACCCC 58.217 50.000 0.00 0.00 0.00 4.95
442 459 5.738619 AATATCCCTGAAAACAAACACCC 57.261 39.130 0.00 0.00 0.00 4.61
503 520 9.537192 TCGTAAAAAGTCTCTCTGTTTGATAAA 57.463 29.630 0.00 0.00 34.77 1.40
504 521 9.537192 TTCGTAAAAAGTCTCTCTGTTTGATAA 57.463 29.630 0.00 0.00 34.77 1.75
505 522 9.193133 CTTCGTAAAAAGTCTCTCTGTTTGATA 57.807 33.333 0.00 0.00 34.77 2.15
506 523 7.711339 ACTTCGTAAAAAGTCTCTCTGTTTGAT 59.289 33.333 0.00 0.00 34.37 2.57
507 524 7.039882 ACTTCGTAAAAAGTCTCTCTGTTTGA 58.960 34.615 0.00 0.00 34.37 2.69
508 525 7.235430 ACTTCGTAAAAAGTCTCTCTGTTTG 57.765 36.000 0.00 0.00 34.37 2.93
509 526 8.937634 TTACTTCGTAAAAAGTCTCTCTGTTT 57.062 30.769 0.00 0.00 40.01 2.83
510 527 8.815189 GTTTACTTCGTAAAAAGTCTCTCTGTT 58.185 33.333 1.19 0.00 39.28 3.16
511 528 8.196103 AGTTTACTTCGTAAAAAGTCTCTCTGT 58.804 33.333 1.19 0.00 39.28 3.41
512 529 8.576936 AGTTTACTTCGTAAAAAGTCTCTCTG 57.423 34.615 1.19 0.00 39.28 3.35
513 530 9.896263 CTAGTTTACTTCGTAAAAAGTCTCTCT 57.104 33.333 1.19 0.00 39.28 3.10
514 531 9.676195 ACTAGTTTACTTCGTAAAAAGTCTCTC 57.324 33.333 0.00 0.00 39.28 3.20
540 557 9.901172 GGGTCTTCTTCATTTAGTCCTAAATAA 57.099 33.333 11.00 3.36 42.11 1.40
541 558 9.280456 AGGGTCTTCTTCATTTAGTCCTAAATA 57.720 33.333 11.00 0.00 42.11 1.40
542 559 8.164057 AGGGTCTTCTTCATTTAGTCCTAAAT 57.836 34.615 6.49 6.49 44.11 1.40
543 560 7.236847 TGAGGGTCTTCTTCATTTAGTCCTAAA 59.763 37.037 2.21 2.21 39.12 1.85
544 561 6.729100 TGAGGGTCTTCTTCATTTAGTCCTAA 59.271 38.462 0.00 0.00 0.00 2.69
545 562 6.261435 TGAGGGTCTTCTTCATTTAGTCCTA 58.739 40.000 0.00 0.00 0.00 2.94
546 563 5.094387 TGAGGGTCTTCTTCATTTAGTCCT 58.906 41.667 0.00 0.00 0.00 3.85
547 564 5.422214 TGAGGGTCTTCTTCATTTAGTCC 57.578 43.478 0.00 0.00 0.00 3.85
548 565 7.162082 TCTTTGAGGGTCTTCTTCATTTAGTC 58.838 38.462 0.00 0.00 0.00 2.59
549 566 7.079451 TCTTTGAGGGTCTTCTTCATTTAGT 57.921 36.000 0.00 0.00 0.00 2.24
550 567 7.986085 TTCTTTGAGGGTCTTCTTCATTTAG 57.014 36.000 0.00 0.00 0.00 1.85
551 568 7.998964 ACTTTCTTTGAGGGTCTTCTTCATTTA 59.001 33.333 0.00 0.00 0.00 1.40
552 569 6.836007 ACTTTCTTTGAGGGTCTTCTTCATTT 59.164 34.615 0.00 0.00 0.00 2.32
553 570 6.368805 ACTTTCTTTGAGGGTCTTCTTCATT 58.631 36.000 0.00 0.00 0.00 2.57
554 571 5.946486 ACTTTCTTTGAGGGTCTTCTTCAT 58.054 37.500 0.00 0.00 0.00 2.57
555 572 5.131142 AGACTTTCTTTGAGGGTCTTCTTCA 59.869 40.000 0.00 0.00 34.13 3.02
556 573 5.616270 AGACTTTCTTTGAGGGTCTTCTTC 58.384 41.667 0.00 0.00 34.13 2.87
557 574 5.638530 AGACTTTCTTTGAGGGTCTTCTT 57.361 39.130 0.00 0.00 34.13 2.52
558 575 5.638530 AAGACTTTCTTTGAGGGTCTTCT 57.361 39.130 0.00 0.00 41.50 2.85
559 576 6.318900 TCAAAAGACTTTCTTTGAGGGTCTTC 59.681 38.462 0.00 0.00 45.19 2.87
560 577 6.187682 TCAAAAGACTTTCTTTGAGGGTCTT 58.812 36.000 0.00 0.00 45.19 3.01
561 578 5.755849 TCAAAAGACTTTCTTTGAGGGTCT 58.244 37.500 0.00 0.00 45.19 3.85
562 579 5.009110 CCTCAAAAGACTTTCTTTGAGGGTC 59.991 44.000 26.37 7.60 45.19 4.46
563 580 4.889995 CCTCAAAAGACTTTCTTTGAGGGT 59.110 41.667 26.37 0.00 45.19 4.34
564 581 5.009110 GTCCTCAAAAGACTTTCTTTGAGGG 59.991 44.000 29.94 19.27 45.19 4.30
565 582 5.825151 AGTCCTCAAAAGACTTTCTTTGAGG 59.175 40.000 27.34 27.34 45.19 3.86
566 583 6.934048 AGTCCTCAAAAGACTTTCTTTGAG 57.066 37.500 16.36 16.36 45.19 3.02
575 592 5.261216 TGTTGGAAAAGTCCTCAAAAGACT 58.739 37.500 0.00 0.00 46.50 3.24
576 593 5.576447 TGTTGGAAAAGTCCTCAAAAGAC 57.424 39.130 0.00 0.00 45.22 3.01
577 594 6.572519 CATTGTTGGAAAAGTCCTCAAAAGA 58.427 36.000 7.57 0.00 45.22 2.52
578 595 5.234972 GCATTGTTGGAAAAGTCCTCAAAAG 59.765 40.000 7.57 5.87 45.22 2.27
579 596 5.115480 GCATTGTTGGAAAAGTCCTCAAAA 58.885 37.500 7.57 0.00 45.22 2.44
580 597 4.442753 GGCATTGTTGGAAAAGTCCTCAAA 60.443 41.667 7.57 0.00 45.22 2.69
581 598 3.069443 GGCATTGTTGGAAAAGTCCTCAA 59.931 43.478 0.00 1.33 45.22 3.02
582 599 2.627699 GGCATTGTTGGAAAAGTCCTCA 59.372 45.455 0.00 0.00 45.22 3.86
583 600 2.029020 GGGCATTGTTGGAAAAGTCCTC 60.029 50.000 0.00 0.00 45.22 3.71
584 601 1.970640 GGGCATTGTTGGAAAAGTCCT 59.029 47.619 0.00 0.00 45.22 3.85
585 602 1.001974 GGGGCATTGTTGGAAAAGTCC 59.998 52.381 0.00 0.00 45.21 3.85
586 603 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
587 604 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
588 605 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
589 606 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
590 607 0.189574 TGGAGGGGCATTGTTGGAAA 59.810 50.000 0.00 0.00 0.00 3.13
591 608 0.413037 ATGGAGGGGCATTGTTGGAA 59.587 50.000 0.00 0.00 0.00 3.53
592 609 0.324552 CATGGAGGGGCATTGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
593 610 0.324552 TCATGGAGGGGCATTGTTGG 60.325 55.000 0.00 0.00 0.00 3.77
594 611 1.205417 GTTCATGGAGGGGCATTGTTG 59.795 52.381 0.00 0.00 0.00 3.33
595 612 1.560505 GTTCATGGAGGGGCATTGTT 58.439 50.000 0.00 0.00 0.00 2.83
596 613 0.324645 GGTTCATGGAGGGGCATTGT 60.325 55.000 0.00 0.00 0.00 2.71
597 614 0.032813 AGGTTCATGGAGGGGCATTG 60.033 55.000 0.00 0.00 0.00 2.82
598 615 1.607225 TAGGTTCATGGAGGGGCATT 58.393 50.000 0.00 0.00 0.00 3.56
599 616 1.838611 ATAGGTTCATGGAGGGGCAT 58.161 50.000 0.00 0.00 0.00 4.40
600 617 1.215173 CAATAGGTTCATGGAGGGGCA 59.785 52.381 0.00 0.00 0.00 5.36
601 618 1.479389 CCAATAGGTTCATGGAGGGGC 60.479 57.143 0.00 0.00 36.27 5.80
602 619 1.479389 GCCAATAGGTTCATGGAGGGG 60.479 57.143 0.00 0.00 36.27 4.79
603 620 1.479389 GGCCAATAGGTTCATGGAGGG 60.479 57.143 0.00 0.00 36.27 4.30
604 621 1.479389 GGGCCAATAGGTTCATGGAGG 60.479 57.143 4.39 0.00 36.27 4.30
605 622 1.815408 CGGGCCAATAGGTTCATGGAG 60.815 57.143 4.39 0.00 36.27 3.86
606 623 0.182537 CGGGCCAATAGGTTCATGGA 59.817 55.000 4.39 0.00 36.27 3.41
607 624 1.455383 GCGGGCCAATAGGTTCATGG 61.455 60.000 4.39 0.00 37.19 3.66
608 625 1.455383 GGCGGGCCAATAGGTTCATG 61.455 60.000 4.39 0.00 37.19 3.07
609 626 1.152756 GGCGGGCCAATAGGTTCAT 60.153 57.895 4.39 0.00 37.19 2.57
610 627 2.274104 GGCGGGCCAATAGGTTCA 59.726 61.111 4.39 0.00 37.19 3.18
611 628 2.274104 TGGCGGGCCAATAGGTTC 59.726 61.111 10.53 0.00 44.12 3.62
652 669 9.985730 CATGTTGCCCATAATATACAGAAAAAT 57.014 29.630 0.00 0.00 30.71 1.82
653 670 8.420222 CCATGTTGCCCATAATATACAGAAAAA 58.580 33.333 0.00 0.00 30.71 1.94
654 671 7.563188 ACCATGTTGCCCATAATATACAGAAAA 59.437 33.333 0.00 0.00 30.71 2.29
655 672 7.066142 ACCATGTTGCCCATAATATACAGAAA 58.934 34.615 0.00 0.00 30.71 2.52
656 673 6.609876 ACCATGTTGCCCATAATATACAGAA 58.390 36.000 0.00 0.00 30.71 3.02
657 674 6.183361 TGACCATGTTGCCCATAATATACAGA 60.183 38.462 0.00 0.00 30.71 3.41
658 675 6.003326 TGACCATGTTGCCCATAATATACAG 58.997 40.000 0.00 0.00 30.71 2.74
659 676 5.946486 TGACCATGTTGCCCATAATATACA 58.054 37.500 0.00 0.00 30.71 2.29
660 677 7.466746 AATGACCATGTTGCCCATAATATAC 57.533 36.000 0.00 0.00 30.71 1.47
661 678 9.593565 TTAAATGACCATGTTGCCCATAATATA 57.406 29.630 0.00 0.00 30.71 0.86
662 679 6.999705 AAATGACCATGTTGCCCATAATAT 57.000 33.333 0.00 0.00 30.71 1.28
663 680 7.904558 TTAAATGACCATGTTGCCCATAATA 57.095 32.000 0.00 0.00 30.71 0.98
664 681 6.805016 TTAAATGACCATGTTGCCCATAAT 57.195 33.333 0.00 0.00 30.71 1.28
665 682 6.805016 ATTAAATGACCATGTTGCCCATAA 57.195 33.333 0.00 0.00 30.71 1.90
666 683 7.201956 GGTTATTAAATGACCATGTTGCCCATA 60.202 37.037 0.00 0.00 38.68 2.74
667 684 6.407979 GGTTATTAAATGACCATGTTGCCCAT 60.408 38.462 0.00 0.00 38.68 4.00
668 685 5.105146 GGTTATTAAATGACCATGTTGCCCA 60.105 40.000 0.00 0.00 38.68 5.36
669 686 5.128663 AGGTTATTAAATGACCATGTTGCCC 59.871 40.000 6.26 0.00 41.10 5.36
670 687 6.096846 AGAGGTTATTAAATGACCATGTTGCC 59.903 38.462 6.26 0.00 41.10 4.52
671 688 7.100458 AGAGGTTATTAAATGACCATGTTGC 57.900 36.000 6.26 0.00 41.10 4.17
672 689 9.613428 TCTAGAGGTTATTAAATGACCATGTTG 57.387 33.333 6.26 0.00 41.10 3.33
676 693 9.853177 CCTTTCTAGAGGTTATTAAATGACCAT 57.147 33.333 6.26 0.00 41.10 3.55
677 694 8.272173 CCCTTTCTAGAGGTTATTAAATGACCA 58.728 37.037 6.26 0.00 41.10 4.02
678 695 8.491958 TCCCTTTCTAGAGGTTATTAAATGACC 58.508 37.037 0.00 0.00 39.09 4.02
679 696 9.327628 GTCCCTTTCTAGAGGTTATTAAATGAC 57.672 37.037 0.00 0.00 34.88 3.06
680 697 9.280456 AGTCCCTTTCTAGAGGTTATTAAATGA 57.720 33.333 0.00 0.00 34.88 2.57
687 704 9.954992 AGTTTATAGTCCCTTTCTAGAGGTTAT 57.045 33.333 0.00 0.00 34.88 1.89
688 705 9.779951 AAGTTTATAGTCCCTTTCTAGAGGTTA 57.220 33.333 0.00 0.00 34.88 2.85
689 706 8.682297 AAGTTTATAGTCCCTTTCTAGAGGTT 57.318 34.615 0.00 0.00 34.88 3.50
690 707 8.682297 AAAGTTTATAGTCCCTTTCTAGAGGT 57.318 34.615 0.00 0.00 34.88 3.85
691 708 9.961264 AAAAAGTTTATAGTCCCTTTCTAGAGG 57.039 33.333 0.00 0.00 36.52 3.69
727 744 5.103643 AGTCCCTAAAAGTCTCCCTGTTTTT 60.104 40.000 0.00 0.00 0.00 1.94
728 745 4.415846 AGTCCCTAAAAGTCTCCCTGTTTT 59.584 41.667 0.00 0.00 0.00 2.43
729 746 3.981375 AGTCCCTAAAAGTCTCCCTGTTT 59.019 43.478 0.00 0.00 0.00 2.83
730 747 3.599348 AGTCCCTAAAAGTCTCCCTGTT 58.401 45.455 0.00 0.00 0.00 3.16
731 748 3.277416 AGTCCCTAAAAGTCTCCCTGT 57.723 47.619 0.00 0.00 0.00 4.00
732 749 3.707102 CCTAGTCCCTAAAAGTCTCCCTG 59.293 52.174 0.00 0.00 0.00 4.45
733 750 3.310731 CCCTAGTCCCTAAAAGTCTCCCT 60.311 52.174 0.00 0.00 0.00 4.20
734 751 3.039743 CCCTAGTCCCTAAAAGTCTCCC 58.960 54.545 0.00 0.00 0.00 4.30
735 752 3.705579 GTCCCTAGTCCCTAAAAGTCTCC 59.294 52.174 0.00 0.00 0.00 3.71
736 753 4.612401 AGTCCCTAGTCCCTAAAAGTCTC 58.388 47.826 0.00 0.00 0.00 3.36
737 754 4.696040 AGTCCCTAGTCCCTAAAAGTCT 57.304 45.455 0.00 0.00 0.00 3.24
738 755 5.758790 AAAGTCCCTAGTCCCTAAAAGTC 57.241 43.478 0.00 0.00 0.00 3.01
739 756 6.526056 AAAAAGTCCCTAGTCCCTAAAAGT 57.474 37.500 0.00 0.00 0.00 2.66
740 757 7.687388 ACTAAAAAGTCCCTAGTCCCTAAAAG 58.313 38.462 0.00 0.00 0.00 2.27
741 758 7.637548 ACTAAAAAGTCCCTAGTCCCTAAAA 57.362 36.000 0.00 0.00 0.00 1.52
742 759 7.293062 TCAACTAAAAAGTCCCTAGTCCCTAAA 59.707 37.037 0.00 0.00 0.00 1.85
743 760 6.788957 TCAACTAAAAAGTCCCTAGTCCCTAA 59.211 38.462 0.00 0.00 0.00 2.69
744 761 6.325352 TCAACTAAAAAGTCCCTAGTCCCTA 58.675 40.000 0.00 0.00 0.00 3.53
745 762 5.160386 TCAACTAAAAAGTCCCTAGTCCCT 58.840 41.667 0.00 0.00 0.00 4.20
746 763 5.247792 TCTCAACTAAAAAGTCCCTAGTCCC 59.752 44.000 0.00 0.00 0.00 4.46
747 764 6.014413 AGTCTCAACTAAAAAGTCCCTAGTCC 60.014 42.308 0.00 0.00 32.59 3.85
748 765 6.995364 AGTCTCAACTAAAAAGTCCCTAGTC 58.005 40.000 0.00 0.00 32.59 2.59
749 766 6.997942 AGTCTCAACTAAAAAGTCCCTAGT 57.002 37.500 0.00 0.00 32.59 2.57
750 767 7.396623 TCCTAGTCTCAACTAAAAAGTCCCTAG 59.603 40.741 0.00 0.00 37.53 3.02
751 768 7.243824 TCCTAGTCTCAACTAAAAAGTCCCTA 58.756 38.462 0.00 0.00 37.53 3.53
752 769 6.082707 TCCTAGTCTCAACTAAAAAGTCCCT 58.917 40.000 0.00 0.00 37.53 4.20
753 770 6.356186 TCCTAGTCTCAACTAAAAAGTCCC 57.644 41.667 0.00 0.00 37.53 4.46
754 771 8.672823 TTTTCCTAGTCTCAACTAAAAAGTCC 57.327 34.615 0.00 0.00 37.53 3.85
755 772 9.327628 ACTTTTCCTAGTCTCAACTAAAAAGTC 57.672 33.333 15.64 0.00 45.28 3.01
761 778 9.774413 CCTAAAACTTTTCCTAGTCTCAACTAA 57.226 33.333 0.00 0.00 37.53 2.24
762 779 9.151177 TCCTAAAACTTTTCCTAGTCTCAACTA 57.849 33.333 0.00 0.00 36.92 2.24
763 780 7.932491 GTCCTAAAACTTTTCCTAGTCTCAACT 59.068 37.037 0.00 0.00 39.66 3.16
764 781 7.932491 AGTCCTAAAACTTTTCCTAGTCTCAAC 59.068 37.037 0.00 0.00 0.00 3.18
765 782 8.030913 AGTCCTAAAACTTTTCCTAGTCTCAA 57.969 34.615 0.00 0.00 0.00 3.02
766 783 7.613551 AGTCCTAAAACTTTTCCTAGTCTCA 57.386 36.000 0.00 0.00 0.00 3.27
767 784 9.022884 TCTAGTCCTAAAACTTTTCCTAGTCTC 57.977 37.037 0.00 0.00 0.00 3.36
768 785 8.953223 TCTAGTCCTAAAACTTTTCCTAGTCT 57.047 34.615 0.00 0.00 0.00 3.24
769 786 9.022884 TCTCTAGTCCTAAAACTTTTCCTAGTC 57.977 37.037 0.00 0.00 0.00 2.59
770 787 8.953223 TCTCTAGTCCTAAAACTTTTCCTAGT 57.047 34.615 0.00 0.00 0.00 2.57
771 788 9.642327 GTTCTCTAGTCCTAAAACTTTTCCTAG 57.358 37.037 0.00 0.00 0.00 3.02
772 789 8.591940 GGTTCTCTAGTCCTAAAACTTTTCCTA 58.408 37.037 0.00 0.00 0.00 2.94
773 790 7.072076 TGGTTCTCTAGTCCTAAAACTTTTCCT 59.928 37.037 0.00 0.00 0.00 3.36
774 791 7.222161 TGGTTCTCTAGTCCTAAAACTTTTCC 58.778 38.462 0.00 0.00 0.00 3.13
775 792 8.672823 TTGGTTCTCTAGTCCTAAAACTTTTC 57.327 34.615 0.00 0.00 0.00 2.29
776 793 8.900781 GTTTGGTTCTCTAGTCCTAAAACTTTT 58.099 33.333 0.00 0.00 0.00 2.27
777 794 8.050930 TGTTTGGTTCTCTAGTCCTAAAACTTT 58.949 33.333 0.00 0.00 0.00 2.66
778 795 7.498239 GTGTTTGGTTCTCTAGTCCTAAAACTT 59.502 37.037 0.00 0.00 0.00 2.66
779 796 6.990939 GTGTTTGGTTCTCTAGTCCTAAAACT 59.009 38.462 0.00 0.00 0.00 2.66
780 797 6.204301 GGTGTTTGGTTCTCTAGTCCTAAAAC 59.796 42.308 0.00 0.00 0.00 2.43
781 798 6.126710 TGGTGTTTGGTTCTCTAGTCCTAAAA 60.127 38.462 0.00 0.00 0.00 1.52
782 799 5.367352 TGGTGTTTGGTTCTCTAGTCCTAAA 59.633 40.000 0.00 0.00 0.00 1.85
783 800 4.903049 TGGTGTTTGGTTCTCTAGTCCTAA 59.097 41.667 0.00 0.00 0.00 2.69
784 801 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
785 802 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
786 803 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
787 804 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
788 805 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
789 806 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
790 807 4.657039 ACTAAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
791 808 3.458487 ACTAAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
792 809 3.816994 ACTAAGGTGGTGTTTGGTTCTC 58.183 45.455 0.00 0.00 0.00 2.87
793 810 3.945640 ACTAAGGTGGTGTTTGGTTCT 57.054 42.857 0.00 0.00 0.00 3.01
794 811 4.994907 AAACTAAGGTGGTGTTTGGTTC 57.005 40.909 0.00 0.00 33.36 3.62
795 812 4.621983 GCAAAACTAAGGTGGTGTTTGGTT 60.622 41.667 0.00 0.00 34.63 3.67
796 813 3.118920 GCAAAACTAAGGTGGTGTTTGGT 60.119 43.478 0.00 0.00 34.63 3.67
797 814 3.453424 GCAAAACTAAGGTGGTGTTTGG 58.547 45.455 0.00 0.00 34.63 3.28
798 815 3.453424 GGCAAAACTAAGGTGGTGTTTG 58.547 45.455 0.00 0.00 34.63 2.93
799 816 2.432874 GGGCAAAACTAAGGTGGTGTTT 59.567 45.455 0.00 0.00 35.71 2.83
800 817 2.036387 GGGCAAAACTAAGGTGGTGTT 58.964 47.619 0.00 0.00 0.00 3.32
801 818 1.216930 AGGGCAAAACTAAGGTGGTGT 59.783 47.619 0.00 0.00 0.00 4.16
802 819 1.995376 AGGGCAAAACTAAGGTGGTG 58.005 50.000 0.00 0.00 0.00 4.17
803 820 2.316108 CAAGGGCAAAACTAAGGTGGT 58.684 47.619 0.00 0.00 0.00 4.16
804 821 2.316108 ACAAGGGCAAAACTAAGGTGG 58.684 47.619 0.00 0.00 0.00 4.61
805 822 4.022329 CCTTACAAGGGCAAAACTAAGGTG 60.022 45.833 0.00 0.00 42.66 4.00
806 823 4.149598 CCTTACAAGGGCAAAACTAAGGT 58.850 43.478 0.00 0.00 42.66 3.50
807 824 4.783764 CCTTACAAGGGCAAAACTAAGG 57.216 45.455 0.00 0.00 42.66 2.69
822 839 7.343574 TGGAGTGTAGTTATATTCTGCCTTACA 59.656 37.037 0.00 0.00 0.00 2.41
825 842 6.384305 AGTGGAGTGTAGTTATATTCTGCCTT 59.616 38.462 0.00 0.00 0.00 4.35
870 899 8.889717 ACGTACATATCTTTTCAAATACCAAGG 58.110 33.333 0.00 0.00 0.00 3.61
913 945 5.526111 GGCAGAATCGGCAACTAATTACTTA 59.474 40.000 7.78 0.00 0.00 2.24
947 979 2.677228 GGTGGTGGGTGGATCAGG 59.323 66.667 0.00 0.00 0.00 3.86
991 1023 1.135575 GCCGATTTATAGCTGCCATGC 60.136 52.381 0.00 0.00 0.00 4.06
999 1031 1.202770 AGTGGGGTGCCGATTTATAGC 60.203 52.381 0.00 0.00 0.00 2.97
1010 1042 4.052518 ATGCAGGGAGTGGGGTGC 62.053 66.667 0.00 0.00 36.42 5.01
1012 1044 2.125912 AGATGCAGGGAGTGGGGT 59.874 61.111 0.00 0.00 0.00 4.95
1046 1078 0.609131 GTGTGGTGTTGATGGGAGGG 60.609 60.000 0.00 0.00 0.00 4.30
1047 1079 0.609131 GGTGTGGTGTTGATGGGAGG 60.609 60.000 0.00 0.00 0.00 4.30
1048 1080 0.110295 TGGTGTGGTGTTGATGGGAG 59.890 55.000 0.00 0.00 0.00 4.30
1049 1081 0.179004 GTGGTGTGGTGTTGATGGGA 60.179 55.000 0.00 0.00 0.00 4.37
1090 1126 1.292242 AGGAGGTGGAGAAGATGGCTA 59.708 52.381 0.00 0.00 0.00 3.93
1091 1127 0.043940 AGGAGGTGGAGAAGATGGCT 59.956 55.000 0.00 0.00 0.00 4.75
1092 1128 0.467804 GAGGAGGTGGAGAAGATGGC 59.532 60.000 0.00 0.00 0.00 4.40
1104 1140 3.986116 GAAGGCGGGAGGAGGAGGT 62.986 68.421 0.00 0.00 0.00 3.85
1191 1235 3.133464 CATTGGCATGGCGACGGT 61.133 61.111 12.11 0.00 0.00 4.83
1388 1438 6.074088 CGATGGATGCTGTTGATTAGTTAGTC 60.074 42.308 0.00 0.00 0.00 2.59
1394 1444 5.936686 AATCGATGGATGCTGTTGATTAG 57.063 39.130 0.00 0.00 31.83 1.73
1395 1445 7.661027 TGATTAATCGATGGATGCTGTTGATTA 59.339 33.333 10.80 8.01 31.83 1.75
1396 1446 6.487668 TGATTAATCGATGGATGCTGTTGATT 59.512 34.615 10.80 9.42 31.83 2.57
1397 1447 5.999600 TGATTAATCGATGGATGCTGTTGAT 59.000 36.000 10.80 0.00 31.83 2.57
1398 1448 5.367302 TGATTAATCGATGGATGCTGTTGA 58.633 37.500 10.80 0.00 31.83 3.18
1399 1449 5.678132 TGATTAATCGATGGATGCTGTTG 57.322 39.130 10.80 0.00 31.83 3.33
1400 1450 5.824624 AGTTGATTAATCGATGGATGCTGTT 59.175 36.000 8.65 0.00 31.83 3.16
1401 1451 5.371526 AGTTGATTAATCGATGGATGCTGT 58.628 37.500 8.65 0.00 31.83 4.40
1402 1452 5.106791 GGAGTTGATTAATCGATGGATGCTG 60.107 44.000 8.65 0.00 31.83 4.41
1404 1454 4.756642 TGGAGTTGATTAATCGATGGATGC 59.243 41.667 8.65 2.66 31.83 3.91
1416 1468 3.102972 AGAGCAGAGCTGGAGTTGATTA 58.897 45.455 0.00 0.00 39.88 1.75
1422 1474 4.099266 CAGTAATTAGAGCAGAGCTGGAGT 59.901 45.833 0.00 0.00 39.88 3.85
1428 1480 4.664150 ACTCCAGTAATTAGAGCAGAGC 57.336 45.455 1.21 0.00 0.00 4.09
1451 1503 8.663911 CCTGCAAAGTTCAAACAAGAAAATTAA 58.336 29.630 0.00 0.00 0.00 1.40
1456 1508 3.932089 GCCTGCAAAGTTCAAACAAGAAA 59.068 39.130 0.00 0.00 0.00 2.52
1655 1707 2.124695 GGCTTGCCCCGGTAGAAG 60.125 66.667 0.00 0.00 0.00 2.85
1859 1919 9.837525 ACAATTAAGTCGAGTAAGTTGTAGTAG 57.162 33.333 12.58 0.00 0.00 2.57
1861 1921 9.538508 AAACAATTAAGTCGAGTAAGTTGTAGT 57.461 29.630 13.88 6.33 0.00 2.73
1923 1983 7.486551 TGCTCGAACAAATAAATAAAAATCCCG 59.513 33.333 0.00 0.00 0.00 5.14
1927 1987 8.863049 CAGCTGCTCGAACAAATAAATAAAAAT 58.137 29.630 0.00 0.00 0.00 1.82
1945 2009 1.153208 CCCAGTCATCCAGCTGCTC 60.153 63.158 8.66 0.00 0.00 4.26
1946 2010 1.922369 ACCCAGTCATCCAGCTGCT 60.922 57.895 8.66 0.00 0.00 4.24
1990 2054 3.356290 AGGAGAAGTTGTGCAAGTTGTT 58.644 40.909 9.43 0.00 34.36 2.83
1991 2055 2.945668 GAGGAGAAGTTGTGCAAGTTGT 59.054 45.455 9.43 5.87 34.36 3.32
2000 2064 2.252714 GGTCAGAGGAGGAGAAGTTGT 58.747 52.381 0.00 0.00 0.00 3.32
2049 2113 2.657237 GAGTCCTCCACGGTGGTG 59.343 66.667 25.53 22.47 43.99 4.17
2050 2114 2.989824 CGAGTCCTCCACGGTGGT 60.990 66.667 25.53 7.01 39.03 4.16
2070 2134 1.350319 CGACACGGTGTGGTTGTTG 59.650 57.895 20.06 0.00 37.94 3.33
2133 2197 4.099170 CGGAACTGCTGCAGCTGC 62.099 66.667 36.60 31.89 42.72 5.25
2301 2365 0.318614 GAGGCTGCGAGTAGATGAGC 60.319 60.000 0.00 0.00 0.00 4.26
2352 2416 3.615056 CGATGTTCACGTAGCCATTGTTA 59.385 43.478 0.00 0.00 0.00 2.41
2353 2417 2.415168 CGATGTTCACGTAGCCATTGTT 59.585 45.455 0.00 0.00 0.00 2.83
2354 2418 1.999735 CGATGTTCACGTAGCCATTGT 59.000 47.619 0.00 0.00 0.00 2.71
2358 2422 0.599060 TGTCGATGTTCACGTAGCCA 59.401 50.000 0.00 0.00 0.00 4.75
2406 2470 0.736636 TGCCGTAGTCATCTACACGG 59.263 55.000 7.60 7.60 46.54 4.94
2442 2506 2.005451 CTCTTCCTCTTCATGCCGTTG 58.995 52.381 0.00 0.00 0.00 4.10
2463 2527 0.602905 AGTACAAACTGCCGCTGGAC 60.603 55.000 0.00 0.00 33.57 4.02
2475 2539 2.632643 CAGCTGGCTGCAGTACAAA 58.367 52.632 16.64 0.00 45.94 2.83
2637 2701 0.913934 TCCCTGCCTATCTGCCACAA 60.914 55.000 0.00 0.00 0.00 3.33
2673 2737 2.019951 CGGTTGGGAGTTCACGACG 61.020 63.158 0.00 0.00 34.44 5.12
2683 2747 1.205417 GTCCGTTCTTATCGGTTGGGA 59.795 52.381 4.36 0.00 46.86 4.37
2684 2748 1.066716 TGTCCGTTCTTATCGGTTGGG 60.067 52.381 4.36 0.00 46.86 4.12
2687 2751 5.470777 TGAAATTTGTCCGTTCTTATCGGTT 59.529 36.000 0.00 0.00 46.86 4.44
2779 2844 8.414003 TCATCACATGTAGGAGTATCTTGTAAC 58.586 37.037 0.00 0.00 33.73 2.50
2823 2894 9.691362 TTTTGCATTCTGGAATTAACTAAGAAC 57.309 29.630 0.00 0.00 30.17 3.01
2826 2897 8.087750 TGGTTTTGCATTCTGGAATTAACTAAG 58.912 33.333 0.00 0.00 0.00 2.18
2838 2909 2.043411 CGTCGTTGGTTTTGCATTCTG 58.957 47.619 0.00 0.00 0.00 3.02
3030 3105 0.310854 GCTTTGGTTTCCGGTGACAG 59.689 55.000 0.00 0.00 0.00 3.51
3060 3135 6.046593 CGGAGCCTTAGTTAAATGATGTGTA 58.953 40.000 0.00 0.00 0.00 2.90
3093 3168 1.721133 GCTGACGTTTTGCCGTTCG 60.721 57.895 0.00 0.00 41.98 3.95
3097 3172 2.170985 CGAGCTGACGTTTTGCCG 59.829 61.111 0.00 0.00 0.00 5.69
3135 3210 2.354604 CCGGCCTGCCACAATTTTAATT 60.355 45.455 9.17 0.00 35.37 1.40
3206 3281 1.226660 GCATGCGCGGCAACTAAAT 60.227 52.632 17.68 0.00 43.62 1.40
3266 3343 0.753867 GGAGGAGGACGGAAGATTCC 59.246 60.000 1.23 1.23 44.05 3.01
3327 3414 1.349234 GGCCGCAAGCATAAACAAAG 58.651 50.000 0.00 0.00 46.50 2.77
3561 3930 2.921490 GCTATCCGGCGACTAAACTAGC 60.921 54.545 9.30 6.05 0.00 3.42
3613 3982 7.789831 TCTTATCTTAACCACCCTCATATGTCT 59.210 37.037 1.90 0.00 0.00 3.41
3617 3986 8.386264 CCATTCTTATCTTAACCACCCTCATAT 58.614 37.037 0.00 0.00 0.00 1.78
3618 3987 7.349859 ACCATTCTTATCTTAACCACCCTCATA 59.650 37.037 0.00 0.00 0.00 2.15
3619 3988 6.160459 ACCATTCTTATCTTAACCACCCTCAT 59.840 38.462 0.00 0.00 0.00 2.90
3666 4035 4.036498 TCGTCATGACTTAGCTAAGCCTAC 59.964 45.833 29.39 19.30 36.79 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.