Multiple sequence alignment - TraesCS5A01G139600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G139600 chr5A 100.000 2288 0 0 1 2288 311944799 311942512 0.000000e+00 4226.0
1 TraesCS5A01G139600 chr5A 86.127 173 20 3 1984 2155 589377750 589377919 1.400000e-42 183.0
2 TraesCS5A01G139600 chr5A 82.796 186 25 6 1980 2163 85660138 85660318 2.350000e-35 159.0
3 TraesCS5A01G139600 chr5A 74.138 348 73 13 953 1290 81480876 81481216 6.630000e-26 128.0
4 TraesCS5A01G139600 chr5A 73.952 334 74 8 965 1290 676897461 676897133 3.090000e-24 122.0
5 TraesCS5A01G139600 chr5D 94.485 1632 69 9 362 1981 241952342 241950720 0.000000e+00 2495.0
6 TraesCS5A01G139600 chr5D 89.383 405 24 4 1 405 241952721 241952336 2.040000e-135 492.0
7 TraesCS5A01G139600 chr5B 87.160 919 93 7 1 909 256915244 256914341 0.000000e+00 1020.0
8 TraesCS5A01G139600 chr5B 87.752 596 60 6 1392 1983 256904967 256904381 0.000000e+00 684.0
9 TraesCS5A01G139600 chr5B 89.069 494 45 3 905 1395 256914389 256913902 2.510000e-169 604.0
10 TraesCS5A01G139600 chr7D 95.425 306 12 1 1983 2288 12424095 12424398 9.500000e-134 486.0
11 TraesCS5A01G139600 chr7D 86.250 240 31 2 1 240 626636310 626636547 2.250000e-65 259.0
12 TraesCS5A01G139600 chr7D 85.833 240 31 3 1 240 626730560 626730796 3.770000e-63 252.0
13 TraesCS5A01G139600 chr2D 92.857 308 20 1 1981 2288 470058965 470059270 1.610000e-121 446.0
14 TraesCS5A01G139600 chr2D 85.876 177 19 6 1980 2153 349863399 349863572 1.400000e-42 183.0
15 TraesCS5A01G139600 chr7A 87.845 362 34 6 958 1316 110476771 110477125 1.260000e-112 416.0
16 TraesCS5A01G139600 chr7A 86.250 240 31 2 1 240 4941677 4941440 2.250000e-65 259.0
17 TraesCS5A01G139600 chr7A 76.378 254 45 12 1046 1290 427519615 427519368 3.090000e-24 122.0
18 TraesCS5A01G139600 chr7A 92.683 41 2 1 520 559 608677514 608677554 8.830000e-05 58.4
19 TraesCS5A01G139600 chr7B 90.228 307 27 2 953 1256 64122252 64122558 4.580000e-107 398.0
20 TraesCS5A01G139600 chr1D 80.332 361 60 9 964 1314 241261043 241260684 1.740000e-66 263.0
21 TraesCS5A01G139600 chrUn 86.250 240 31 2 1 240 385641312 385641075 2.250000e-65 259.0
22 TraesCS5A01G139600 chrUn 86.250 240 31 2 1 240 396064696 396064459 2.250000e-65 259.0
23 TraesCS5A01G139600 chr4D 85.833 240 32 2 1 240 109495726 109495489 1.050000e-63 254.0
24 TraesCS5A01G139600 chr4D 86.325 234 30 2 7 240 123539819 123539588 1.050000e-63 254.0
25 TraesCS5A01G139600 chr3D 85.417 240 33 2 1 240 602879111 602879348 4.880000e-62 248.0
26 TraesCS5A01G139600 chr6D 84.746 177 19 7 1980 2153 135102698 135102869 1.090000e-38 171.0
27 TraesCS5A01G139600 chr3A 83.152 184 25 5 1982 2163 169839888 169839709 1.820000e-36 163.0
28 TraesCS5A01G139600 chr1A 82.609 184 25 6 1982 2163 327013369 327013191 3.040000e-34 156.0
29 TraesCS5A01G139600 chr1A 82.955 176 25 4 1980 2155 500844303 500844473 1.090000e-33 154.0
30 TraesCS5A01G139600 chr3B 75.649 308 66 8 989 1290 727123054 727122750 6.590000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G139600 chr5A 311942512 311944799 2287 True 4226.0 4226 100.0000 1 2288 1 chr5A.!!$R1 2287
1 TraesCS5A01G139600 chr5D 241950720 241952721 2001 True 1493.5 2495 91.9340 1 1981 2 chr5D.!!$R1 1980
2 TraesCS5A01G139600 chr5B 256913902 256915244 1342 True 812.0 1020 88.1145 1 1395 2 chr5B.!!$R2 1394
3 TraesCS5A01G139600 chr5B 256904381 256904967 586 True 684.0 684 87.7520 1392 1983 1 chr5B.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.313043 CAAGCAAAGCCAGTGGTCTG 59.687 55.0 11.74 6.95 41.01 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2155 0.392461 CCGAGAAAATCCGCCCAAGA 60.392 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.424883 TCCAAGTAGGTTTACCAGACAAAAA 58.575 36.000 1.13 0.00 38.89 1.94
58 59 6.319405 TCCAAGTAGGTTTACCAGACAAAAAC 59.681 38.462 1.13 0.00 38.89 2.43
77 78 6.657836 AAAACGATAAGTCTAACATTCCCG 57.342 37.500 0.00 0.00 0.00 5.14
101 102 1.109323 ACCAAGCAAAGCCAGTGGTC 61.109 55.000 11.74 3.09 34.93 4.02
103 104 0.313043 CAAGCAAAGCCAGTGGTCTG 59.687 55.000 11.74 6.95 41.01 3.51
135 136 4.270084 GGCCAGCTAAAACAAAAGTTTCAC 59.730 41.667 0.00 0.00 0.00 3.18
246 247 6.549061 ACCCTCGTTTAAAAGAATAATTCGC 58.451 36.000 5.35 0.00 34.02 4.70
469 507 7.147532 ACACTCCTTTTAAAGTTGAGGTCTACT 60.148 37.037 12.96 0.00 33.54 2.57
573 612 1.184970 CGGCCAAATCCACCCTGTTT 61.185 55.000 2.24 0.00 0.00 2.83
695 740 6.394345 ACTTTCTGGGAGGATTAGTTTCAT 57.606 37.500 0.00 0.00 0.00 2.57
699 744 7.749377 TTCTGGGAGGATTAGTTTCATTAGA 57.251 36.000 0.00 0.00 0.00 2.10
709 754 8.175716 GGATTAGTTTCATTAGACTTTGTTCCG 58.824 37.037 0.00 0.00 0.00 4.30
823 877 5.251700 CCTCCATTCCCCTGCTACTAATATT 59.748 44.000 0.00 0.00 0.00 1.28
858 912 3.181467 CCTTCAGCCCATTGAACAAACAA 60.181 43.478 0.00 0.00 33.71 2.83
864 918 6.663093 TCAGCCCATTGAACAAACAATACTAT 59.337 34.615 0.00 0.00 38.25 2.12
895 949 8.039603 TGCTTTGTCATATAAAGAACATCGTT 57.960 30.769 0.00 0.00 37.33 3.85
896 950 7.962373 TGCTTTGTCATATAAAGAACATCGTTG 59.038 33.333 0.00 0.00 37.33 4.10
969 1023 0.794473 CTACGACGGAAACTTTGGCC 59.206 55.000 0.00 0.00 0.00 5.36
1012 1066 0.179129 GCAAAGGATGGGATGCAACG 60.179 55.000 0.00 0.00 38.63 4.10
1113 1170 5.347907 GGTTTTCGACGACTGTTATCATTCT 59.652 40.000 0.00 0.00 0.00 2.40
1117 1174 7.909777 TTCGACGACTGTTATCATTCTATTC 57.090 36.000 0.00 0.00 0.00 1.75
1201 1258 3.385577 CTCGCTAGGTTGGCTAGATTTC 58.614 50.000 0.00 0.00 0.00 2.17
1217 1274 7.012421 GGCTAGATTTCCTTTGACGTATGATTT 59.988 37.037 0.00 0.00 0.00 2.17
1455 1517 2.146342 CAACAGTACAAGGACCAGCAG 58.854 52.381 0.00 0.00 0.00 4.24
1512 1574 7.949690 ACTTAAAAACTTACAGGTTCCAACT 57.050 32.000 0.00 0.00 0.00 3.16
1513 1575 8.357290 ACTTAAAAACTTACAGGTTCCAACTT 57.643 30.769 0.00 0.00 0.00 2.66
1514 1576 8.464404 ACTTAAAAACTTACAGGTTCCAACTTC 58.536 33.333 0.00 0.00 0.00 3.01
1515 1577 5.847111 AAAACTTACAGGTTCCAACTTCC 57.153 39.130 0.00 0.00 0.00 3.46
1516 1578 4.513406 AACTTACAGGTTCCAACTTCCA 57.487 40.909 0.00 0.00 0.00 3.53
1517 1579 4.513406 ACTTACAGGTTCCAACTTCCAA 57.487 40.909 0.00 0.00 0.00 3.53
1518 1580 4.204799 ACTTACAGGTTCCAACTTCCAAC 58.795 43.478 0.00 0.00 0.00 3.77
1544 1606 6.911250 ATAACATCCATGTGCATCAATGAT 57.089 33.333 8.17 0.00 41.61 2.45
1602 1664 9.388672 TCAAGTACTAATTAAGCCATAGGGTAT 57.611 33.333 0.00 0.00 36.17 2.73
1628 1690 2.611225 ATTCCAACGAGCATCTCTCC 57.389 50.000 0.00 0.00 38.62 3.71
1634 1696 2.418910 CGAGCATCTCTCCGGTGGT 61.419 63.158 0.00 0.00 38.62 4.16
1663 1725 0.327924 ATCGAGGATGGCCACAACAA 59.672 50.000 8.16 0.00 36.29 2.83
1664 1726 0.327924 TCGAGGATGGCCACAACAAT 59.672 50.000 8.16 0.00 36.29 2.71
1668 1730 3.554934 GAGGATGGCCACAACAATCATA 58.445 45.455 8.16 0.00 36.29 2.15
1739 1801 0.250424 TAGTCGACGAGGGTGACACA 60.250 55.000 10.46 0.00 35.09 3.72
1801 1863 1.461268 TCTGTCCCTGCCACCTTCA 60.461 57.895 0.00 0.00 0.00 3.02
1850 1912 1.047801 GAGGAGAATGGGAGAGAGGC 58.952 60.000 0.00 0.00 0.00 4.70
1851 1913 0.341258 AGGAGAATGGGAGAGAGGCA 59.659 55.000 0.00 0.00 0.00 4.75
1939 2002 0.658897 GTGAAACCCGACGCTTTTGA 59.341 50.000 0.00 0.00 0.00 2.69
1959 2022 4.157120 GGGATCGGTCGGGGTGTG 62.157 72.222 0.00 0.00 0.00 3.82
1961 2024 2.652095 GGATCGGTCGGGGTGTGAA 61.652 63.158 0.00 0.00 0.00 3.18
1982 2045 2.668144 CCCTGTGGGTTTAACCAAGA 57.332 50.000 16.58 1.89 43.34 3.02
1984 2047 3.301274 CCCTGTGGGTTTAACCAAGAAA 58.699 45.455 16.58 0.00 43.34 2.52
1985 2048 3.707102 CCCTGTGGGTTTAACCAAGAAAA 59.293 43.478 16.58 0.00 43.34 2.29
1986 2049 4.162509 CCCTGTGGGTTTAACCAAGAAAAA 59.837 41.667 16.58 0.00 43.34 1.94
2007 2070 7.669089 AAAAAGTCCATTTTACTCCCTTGAA 57.331 32.000 0.00 0.00 40.27 2.69
2008 2071 6.901081 AAAGTCCATTTTACTCCCTTGAAG 57.099 37.500 0.00 0.00 0.00 3.02
2009 2072 5.843019 AGTCCATTTTACTCCCTTGAAGA 57.157 39.130 0.00 0.00 0.00 2.87
2010 2073 6.200878 AGTCCATTTTACTCCCTTGAAGAA 57.799 37.500 0.00 0.00 0.00 2.52
2011 2074 6.610830 AGTCCATTTTACTCCCTTGAAGAAA 58.389 36.000 0.00 0.00 0.00 2.52
2012 2075 7.066781 AGTCCATTTTACTCCCTTGAAGAAAA 58.933 34.615 0.00 0.00 0.00 2.29
2013 2076 7.730332 AGTCCATTTTACTCCCTTGAAGAAAAT 59.270 33.333 0.00 0.00 30.57 1.82
2014 2077 7.814587 GTCCATTTTACTCCCTTGAAGAAAATG 59.185 37.037 16.09 16.09 39.49 2.32
2015 2078 7.099120 CCATTTTACTCCCTTGAAGAAAATGG 58.901 38.462 22.56 22.56 45.15 3.16
2016 2079 6.664428 TTTTACTCCCTTGAAGAAAATGGG 57.336 37.500 0.00 0.00 39.22 4.00
2017 2080 3.903530 ACTCCCTTGAAGAAAATGGGT 57.096 42.857 0.00 0.00 38.95 4.51
2018 2081 4.199002 ACTCCCTTGAAGAAAATGGGTT 57.801 40.909 0.00 0.00 38.95 4.11
2019 2082 3.897505 ACTCCCTTGAAGAAAATGGGTTG 59.102 43.478 0.00 0.00 38.95 3.77
2020 2083 3.897505 CTCCCTTGAAGAAAATGGGTTGT 59.102 43.478 0.00 0.00 38.95 3.32
2021 2084 4.294347 TCCCTTGAAGAAAATGGGTTGTT 58.706 39.130 0.00 0.00 38.95 2.83
2022 2085 4.343814 TCCCTTGAAGAAAATGGGTTGTTC 59.656 41.667 0.00 0.00 38.95 3.18
2023 2086 4.298332 CCTTGAAGAAAATGGGTTGTTCG 58.702 43.478 0.00 0.00 34.38 3.95
2024 2087 3.363341 TGAAGAAAATGGGTTGTTCGC 57.637 42.857 0.00 0.00 34.38 4.70
2025 2088 2.690497 TGAAGAAAATGGGTTGTTCGCA 59.310 40.909 0.00 0.00 42.92 5.10
2027 2090 4.520874 TGAAGAAAATGGGTTGTTCGCATA 59.479 37.500 0.00 0.00 46.57 3.14
2028 2091 5.010112 TGAAGAAAATGGGTTGTTCGCATAA 59.990 36.000 0.00 0.00 46.57 1.90
2029 2092 4.805219 AGAAAATGGGTTGTTCGCATAAC 58.195 39.130 0.00 0.00 46.57 1.89
2030 2093 3.586100 AAATGGGTTGTTCGCATAACC 57.414 42.857 5.17 5.17 46.57 2.85
2033 2096 3.259592 GGTTGTTCGCATAACCCCT 57.740 52.632 2.31 0.00 40.31 4.79
2034 2097 1.541379 GGTTGTTCGCATAACCCCTT 58.459 50.000 2.31 0.00 40.31 3.95
2035 2098 1.201414 GGTTGTTCGCATAACCCCTTG 59.799 52.381 2.31 0.00 40.31 3.61
2036 2099 2.156098 GTTGTTCGCATAACCCCTTGA 58.844 47.619 0.00 0.00 0.00 3.02
2037 2100 2.554893 GTTGTTCGCATAACCCCTTGAA 59.445 45.455 0.00 0.00 0.00 2.69
2038 2101 2.156098 TGTTCGCATAACCCCTTGAAC 58.844 47.619 0.00 0.00 36.98 3.18
2039 2102 2.224670 TGTTCGCATAACCCCTTGAACT 60.225 45.455 4.77 0.00 37.27 3.01
2040 2103 2.817844 GTTCGCATAACCCCTTGAACTT 59.182 45.455 0.00 0.00 34.42 2.66
2041 2104 3.149005 TCGCATAACCCCTTGAACTTT 57.851 42.857 0.00 0.00 0.00 2.66
2042 2105 3.492337 TCGCATAACCCCTTGAACTTTT 58.508 40.909 0.00 0.00 0.00 2.27
2043 2106 3.892588 TCGCATAACCCCTTGAACTTTTT 59.107 39.130 0.00 0.00 0.00 1.94
2066 2129 3.955524 TTTGTTCACTTAACCCCCTGA 57.044 42.857 0.00 0.00 37.27 3.86
2067 2130 4.463050 TTTGTTCACTTAACCCCCTGAT 57.537 40.909 0.00 0.00 37.27 2.90
2068 2131 3.713826 TGTTCACTTAACCCCCTGATC 57.286 47.619 0.00 0.00 37.27 2.92
2069 2132 3.256704 TGTTCACTTAACCCCCTGATCT 58.743 45.455 0.00 0.00 37.27 2.75
2070 2133 4.431378 TGTTCACTTAACCCCCTGATCTA 58.569 43.478 0.00 0.00 37.27 1.98
2071 2134 5.036916 TGTTCACTTAACCCCCTGATCTAT 58.963 41.667 0.00 0.00 37.27 1.98
2072 2135 5.130477 TGTTCACTTAACCCCCTGATCTATC 59.870 44.000 0.00 0.00 37.27 2.08
2073 2136 4.232091 TCACTTAACCCCCTGATCTATCC 58.768 47.826 0.00 0.00 0.00 2.59
2074 2137 3.973973 CACTTAACCCCCTGATCTATCCA 59.026 47.826 0.00 0.00 0.00 3.41
2075 2138 4.412199 CACTTAACCCCCTGATCTATCCAA 59.588 45.833 0.00 0.00 0.00 3.53
2076 2139 5.073691 CACTTAACCCCCTGATCTATCCAAT 59.926 44.000 0.00 0.00 0.00 3.16
2077 2140 6.272324 CACTTAACCCCCTGATCTATCCAATA 59.728 42.308 0.00 0.00 0.00 1.90
2078 2141 6.272558 ACTTAACCCCCTGATCTATCCAATAC 59.727 42.308 0.00 0.00 0.00 1.89
2079 2142 3.532102 ACCCCCTGATCTATCCAATACC 58.468 50.000 0.00 0.00 0.00 2.73
2080 2143 2.501723 CCCCCTGATCTATCCAATACCG 59.498 54.545 0.00 0.00 0.00 4.02
2081 2144 3.173965 CCCCTGATCTATCCAATACCGT 58.826 50.000 0.00 0.00 0.00 4.83
2082 2145 3.583086 CCCCTGATCTATCCAATACCGTT 59.417 47.826 0.00 0.00 0.00 4.44
2083 2146 4.322801 CCCCTGATCTATCCAATACCGTTC 60.323 50.000 0.00 0.00 0.00 3.95
2084 2147 4.283467 CCCTGATCTATCCAATACCGTTCA 59.717 45.833 0.00 0.00 0.00 3.18
2085 2148 5.473931 CCTGATCTATCCAATACCGTTCAG 58.526 45.833 0.00 0.00 0.00 3.02
2086 2149 5.243954 CCTGATCTATCCAATACCGTTCAGA 59.756 44.000 0.00 0.00 31.90 3.27
2087 2150 6.239317 CCTGATCTATCCAATACCGTTCAGAA 60.239 42.308 0.00 0.00 31.90 3.02
2088 2151 7.119709 TGATCTATCCAATACCGTTCAGAAA 57.880 36.000 0.00 0.00 0.00 2.52
2089 2152 7.735917 TGATCTATCCAATACCGTTCAGAAAT 58.264 34.615 0.00 0.00 0.00 2.17
2090 2153 8.866093 TGATCTATCCAATACCGTTCAGAAATA 58.134 33.333 0.00 0.00 0.00 1.40
2091 2154 9.706691 GATCTATCCAATACCGTTCAGAAATAA 57.293 33.333 0.00 0.00 0.00 1.40
2093 2156 9.706691 TCTATCCAATACCGTTCAGAAATAATC 57.293 33.333 0.00 0.00 0.00 1.75
2094 2157 9.712305 CTATCCAATACCGTTCAGAAATAATCT 57.288 33.333 0.00 0.00 39.68 2.40
2095 2158 8.980481 ATCCAATACCGTTCAGAAATAATCTT 57.020 30.769 0.00 0.00 35.73 2.40
2096 2159 8.208718 TCCAATACCGTTCAGAAATAATCTTG 57.791 34.615 0.00 0.00 35.73 3.02
2097 2160 7.282224 TCCAATACCGTTCAGAAATAATCTTGG 59.718 37.037 0.00 0.00 35.73 3.61
2098 2161 7.417612 CAATACCGTTCAGAAATAATCTTGGG 58.582 38.462 0.00 0.00 35.73 4.12
2099 2162 3.694566 ACCGTTCAGAAATAATCTTGGGC 59.305 43.478 0.00 0.00 35.73 5.36
2100 2163 3.242739 CCGTTCAGAAATAATCTTGGGCG 60.243 47.826 0.00 0.00 35.73 6.13
2101 2164 3.242739 CGTTCAGAAATAATCTTGGGCGG 60.243 47.826 0.00 0.00 35.73 6.13
2102 2165 3.924114 TCAGAAATAATCTTGGGCGGA 57.076 42.857 0.00 0.00 35.73 5.54
2103 2166 4.437682 TCAGAAATAATCTTGGGCGGAT 57.562 40.909 0.00 0.00 35.73 4.18
2104 2167 4.792068 TCAGAAATAATCTTGGGCGGATT 58.208 39.130 0.00 0.00 35.73 3.01
2105 2168 5.200483 TCAGAAATAATCTTGGGCGGATTT 58.800 37.500 4.77 0.00 35.73 2.17
2106 2169 5.656416 TCAGAAATAATCTTGGGCGGATTTT 59.344 36.000 4.77 0.00 35.73 1.82
2107 2170 5.979517 CAGAAATAATCTTGGGCGGATTTTC 59.020 40.000 4.77 4.52 35.73 2.29
2108 2171 5.893824 AGAAATAATCTTGGGCGGATTTTCT 59.106 36.000 4.77 6.16 33.39 2.52
2109 2172 5.774498 AATAATCTTGGGCGGATTTTCTC 57.226 39.130 4.77 0.00 35.40 2.87
2110 2173 1.668419 ATCTTGGGCGGATTTTCTCG 58.332 50.000 0.00 0.00 0.00 4.04
2111 2174 0.392461 TCTTGGGCGGATTTTCTCGG 60.392 55.000 0.00 0.00 0.00 4.63
2112 2175 1.376609 CTTGGGCGGATTTTCTCGGG 61.377 60.000 0.00 0.00 0.00 5.14
2113 2176 2.132089 TTGGGCGGATTTTCTCGGGT 62.132 55.000 0.00 0.00 0.00 5.28
2114 2177 2.112815 GGGCGGATTTTCTCGGGTG 61.113 63.158 0.00 0.00 0.00 4.61
2115 2178 2.112815 GGCGGATTTTCTCGGGTGG 61.113 63.158 0.00 0.00 0.00 4.61
2116 2179 1.376812 GCGGATTTTCTCGGGTGGT 60.377 57.895 0.00 0.00 0.00 4.16
2117 2180 0.958876 GCGGATTTTCTCGGGTGGTT 60.959 55.000 0.00 0.00 0.00 3.67
2118 2181 1.530323 CGGATTTTCTCGGGTGGTTT 58.470 50.000 0.00 0.00 0.00 3.27
2119 2182 1.199097 CGGATTTTCTCGGGTGGTTTG 59.801 52.381 0.00 0.00 0.00 2.93
2120 2183 1.067846 GGATTTTCTCGGGTGGTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
2121 2184 1.886542 GATTTTCTCGGGTGGTTTGCT 59.113 47.619 0.00 0.00 0.00 3.91
2122 2185 1.028905 TTTTCTCGGGTGGTTTGCTG 58.971 50.000 0.00 0.00 0.00 4.41
2123 2186 0.181587 TTTCTCGGGTGGTTTGCTGA 59.818 50.000 0.00 0.00 0.00 4.26
2124 2187 0.534203 TTCTCGGGTGGTTTGCTGAC 60.534 55.000 0.00 0.00 0.00 3.51
2125 2188 2.280524 TCGGGTGGTTTGCTGACG 60.281 61.111 0.00 0.00 0.00 4.35
2126 2189 2.590575 CGGGTGGTTTGCTGACGT 60.591 61.111 0.00 0.00 0.00 4.34
2127 2190 2.892334 CGGGTGGTTTGCTGACGTG 61.892 63.158 0.00 0.00 0.00 4.49
2128 2191 2.551912 GGGTGGTTTGCTGACGTGG 61.552 63.158 0.00 0.00 0.00 4.94
2129 2192 1.525077 GGTGGTTTGCTGACGTGGA 60.525 57.895 0.00 0.00 0.00 4.02
2130 2193 1.647084 GTGGTTTGCTGACGTGGAC 59.353 57.895 0.00 0.00 0.00 4.02
2131 2194 1.092921 GTGGTTTGCTGACGTGGACA 61.093 55.000 0.00 0.00 0.00 4.02
2132 2195 0.179032 TGGTTTGCTGACGTGGACAT 60.179 50.000 0.00 0.00 0.00 3.06
2133 2196 0.951558 GGTTTGCTGACGTGGACATT 59.048 50.000 0.00 0.00 0.00 2.71
2134 2197 1.334960 GGTTTGCTGACGTGGACATTG 60.335 52.381 0.00 0.00 0.00 2.82
2135 2198 1.333619 GTTTGCTGACGTGGACATTGT 59.666 47.619 0.00 0.00 0.00 2.71
2136 2199 1.225855 TTGCTGACGTGGACATTGTC 58.774 50.000 8.34 8.34 0.00 3.18
2137 2200 0.105778 TGCTGACGTGGACATTGTCA 59.894 50.000 18.09 9.12 40.12 3.58
2138 2201 1.225855 GCTGACGTGGACATTGTCAA 58.774 50.000 18.09 4.29 41.65 3.18
2139 2202 1.601903 GCTGACGTGGACATTGTCAAA 59.398 47.619 18.09 3.43 41.65 2.69
2140 2203 2.349817 GCTGACGTGGACATTGTCAAAG 60.350 50.000 18.09 11.84 41.65 2.77
2141 2204 2.872245 CTGACGTGGACATTGTCAAAGT 59.128 45.455 18.09 14.96 41.65 2.66
2142 2205 2.611751 TGACGTGGACATTGTCAAAGTG 59.388 45.455 16.16 3.21 39.50 3.16
2143 2206 1.946768 ACGTGGACATTGTCAAAGTGG 59.053 47.619 18.09 4.08 33.68 4.00
2144 2207 1.946768 CGTGGACATTGTCAAAGTGGT 59.053 47.619 18.09 0.00 33.68 4.16
2145 2208 2.357637 CGTGGACATTGTCAAAGTGGTT 59.642 45.455 18.09 0.00 33.68 3.67
2146 2209 3.181491 CGTGGACATTGTCAAAGTGGTTT 60.181 43.478 18.09 0.00 33.68 3.27
2147 2210 4.111916 GTGGACATTGTCAAAGTGGTTTG 58.888 43.478 18.09 0.00 43.96 2.93
2148 2211 3.766591 TGGACATTGTCAAAGTGGTTTGT 59.233 39.130 18.09 0.00 43.22 2.83
2149 2212 4.221703 TGGACATTGTCAAAGTGGTTTGTT 59.778 37.500 18.09 0.00 43.22 2.83
2150 2213 4.566360 GGACATTGTCAAAGTGGTTTGTTG 59.434 41.667 18.09 0.00 43.22 3.33
2151 2214 5.398603 ACATTGTCAAAGTGGTTTGTTGA 57.601 34.783 0.00 0.00 43.22 3.18
2153 2216 3.859411 TGTCAAAGTGGTTTGTTGACC 57.141 42.857 11.94 0.00 46.85 4.02
2154 2217 3.157881 TGTCAAAGTGGTTTGTTGACCA 58.842 40.909 11.94 0.00 46.85 4.02
2160 2223 1.490574 TGGTTTGTTGACCAAAGGGG 58.509 50.000 0.00 0.00 46.33 4.79
2161 2224 0.105964 GGTTTGTTGACCAAAGGGGC 59.894 55.000 0.00 0.00 43.52 5.80
2162 2225 0.105964 GTTTGTTGACCAAAGGGGCC 59.894 55.000 0.00 0.00 44.10 5.80
2163 2226 0.031616 TTTGTTGACCAAAGGGGCCT 60.032 50.000 0.84 0.00 44.10 5.19
2164 2227 0.031616 TTGTTGACCAAAGGGGCCTT 60.032 50.000 0.84 0.00 44.10 4.35
2165 2228 0.758685 TGTTGACCAAAGGGGCCTTG 60.759 55.000 0.84 0.11 44.10 3.61
2166 2229 0.759060 GTTGACCAAAGGGGCCTTGT 60.759 55.000 0.84 0.00 44.10 3.16
2167 2230 0.758685 TTGACCAAAGGGGCCTTGTG 60.759 55.000 0.84 0.00 44.10 3.33
2168 2231 1.908299 GACCAAAGGGGCCTTGTGG 60.908 63.158 22.77 22.77 42.05 4.17
2169 2232 2.201210 CCAAAGGGGCCTTGTGGT 59.799 61.111 16.70 0.00 36.26 4.16
2170 2233 1.908299 CCAAAGGGGCCTTGTGGTC 60.908 63.158 16.70 0.00 36.26 4.02
2171 2234 1.152567 CAAAGGGGCCTTGTGGTCA 60.153 57.895 0.84 0.00 40.42 4.02
2172 2235 1.153756 AAAGGGGCCTTGTGGTCAG 59.846 57.895 0.84 0.00 40.42 3.51
2173 2236 2.371897 AAAGGGGCCTTGTGGTCAGG 62.372 60.000 0.84 0.00 40.42 3.86
2174 2237 3.580319 GGGGCCTTGTGGTCAGGT 61.580 66.667 0.84 0.00 40.42 4.00
2175 2238 2.282462 GGGCCTTGTGGTCAGGTG 60.282 66.667 0.84 0.00 40.42 4.00
2176 2239 2.829384 GGGCCTTGTGGTCAGGTGA 61.829 63.158 0.84 0.00 40.42 4.02
2177 2240 1.150536 GGCCTTGTGGTCAGGTGAA 59.849 57.895 0.00 0.00 38.01 3.18
2178 2241 0.890996 GGCCTTGTGGTCAGGTGAAG 60.891 60.000 0.00 0.00 38.01 3.02
2179 2242 0.108585 GCCTTGTGGTCAGGTGAAGA 59.891 55.000 0.00 0.00 35.27 2.87
2180 2243 1.879796 GCCTTGTGGTCAGGTGAAGAG 60.880 57.143 0.00 0.00 35.27 2.85
2181 2244 1.517242 CTTGTGGTCAGGTGAAGAGC 58.483 55.000 0.00 0.00 0.00 4.09
2182 2245 0.249868 TTGTGGTCAGGTGAAGAGCG 60.250 55.000 0.00 0.00 36.34 5.03
2183 2246 2.029844 GTGGTCAGGTGAAGAGCGC 61.030 63.158 0.00 0.00 36.34 5.92
2184 2247 2.343758 GGTCAGGTGAAGAGCGCA 59.656 61.111 11.47 0.00 0.00 6.09
2185 2248 1.739562 GGTCAGGTGAAGAGCGCAG 60.740 63.158 11.47 0.00 0.00 5.18
2201 2264 4.087892 AGCCGGCGCTCAGTTCAT 62.088 61.111 23.20 0.00 43.95 2.57
2202 2265 3.869272 GCCGGCGCTCAGTTCATG 61.869 66.667 12.58 0.00 0.00 3.07
2203 2266 3.869272 CCGGCGCTCAGTTCATGC 61.869 66.667 7.64 0.00 0.00 4.06
2204 2267 3.869272 CGGCGCTCAGTTCATGCC 61.869 66.667 7.64 0.00 42.29 4.40
2205 2268 3.869272 GGCGCTCAGTTCATGCCG 61.869 66.667 7.64 0.00 35.77 5.69
2206 2269 2.815211 GCGCTCAGTTCATGCCGA 60.815 61.111 0.00 0.00 0.00 5.54
2207 2270 2.176273 GCGCTCAGTTCATGCCGAT 61.176 57.895 0.00 0.00 0.00 4.18
2208 2271 1.640069 CGCTCAGTTCATGCCGATG 59.360 57.895 0.00 0.00 0.00 3.84
2209 2272 1.769098 CGCTCAGTTCATGCCGATGG 61.769 60.000 0.00 0.00 0.00 3.51
2210 2273 0.745845 GCTCAGTTCATGCCGATGGT 60.746 55.000 0.00 0.00 0.00 3.55
2211 2274 1.012086 CTCAGTTCATGCCGATGGTG 58.988 55.000 0.00 0.00 0.00 4.17
2212 2275 0.324614 TCAGTTCATGCCGATGGTGT 59.675 50.000 0.00 0.00 0.00 4.16
2213 2276 1.167851 CAGTTCATGCCGATGGTGTT 58.832 50.000 0.00 0.00 0.00 3.32
2214 2277 1.135603 CAGTTCATGCCGATGGTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
2215 2278 0.881118 GTTCATGCCGATGGTGTTGT 59.119 50.000 0.00 0.00 0.00 3.32
2216 2279 1.135689 GTTCATGCCGATGGTGTTGTC 60.136 52.381 0.00 0.00 0.00 3.18
2217 2280 1.018752 TCATGCCGATGGTGTTGTCG 61.019 55.000 0.00 0.00 37.58 4.35
2218 2281 1.003839 ATGCCGATGGTGTTGTCGT 60.004 52.632 0.00 0.00 36.17 4.34
2219 2282 0.605319 ATGCCGATGGTGTTGTCGTT 60.605 50.000 0.00 0.00 36.17 3.85
2220 2283 1.225376 TGCCGATGGTGTTGTCGTTC 61.225 55.000 0.00 0.00 36.17 3.95
2221 2284 0.949105 GCCGATGGTGTTGTCGTTCT 60.949 55.000 0.00 0.00 36.17 3.01
2222 2285 1.508632 CCGATGGTGTTGTCGTTCTT 58.491 50.000 0.00 0.00 36.17 2.52
2223 2286 1.459592 CCGATGGTGTTGTCGTTCTTC 59.540 52.381 0.00 0.00 36.17 2.87
2224 2287 1.124297 CGATGGTGTTGTCGTTCTTCG 59.876 52.381 0.00 0.00 41.41 3.79
2225 2288 2.132762 GATGGTGTTGTCGTTCTTCGT 58.867 47.619 0.00 0.00 40.80 3.85
2226 2289 1.563111 TGGTGTTGTCGTTCTTCGTC 58.437 50.000 0.00 0.00 40.80 4.20
2227 2290 0.857287 GGTGTTGTCGTTCTTCGTCC 59.143 55.000 0.00 0.00 40.80 4.79
2228 2291 0.501435 GTGTTGTCGTTCTTCGTCCG 59.499 55.000 0.00 0.00 40.80 4.79
2229 2292 1.210545 TGTTGTCGTTCTTCGTCCGC 61.211 55.000 0.00 0.00 40.80 5.54
2230 2293 2.012414 TTGTCGTTCTTCGTCCGCG 61.012 57.895 0.00 0.00 40.80 6.46
2231 2294 3.824510 GTCGTTCTTCGTCCGCGC 61.825 66.667 0.00 0.00 40.80 6.86
2250 2313 3.518998 GCTAGCGCCTCGTCCTCA 61.519 66.667 2.29 0.00 0.00 3.86
2251 2314 2.851071 GCTAGCGCCTCGTCCTCAT 61.851 63.158 2.29 0.00 0.00 2.90
2252 2315 1.007964 CTAGCGCCTCGTCCTCATG 60.008 63.158 2.29 0.00 0.00 3.07
2253 2316 1.729470 CTAGCGCCTCGTCCTCATGT 61.729 60.000 2.29 0.00 0.00 3.21
2254 2317 1.320344 TAGCGCCTCGTCCTCATGTT 61.320 55.000 2.29 0.00 0.00 2.71
2255 2318 2.456119 GCGCCTCGTCCTCATGTTG 61.456 63.158 0.00 0.00 0.00 3.33
2256 2319 1.215382 CGCCTCGTCCTCATGTTGA 59.785 57.895 0.00 0.00 0.00 3.18
2257 2320 0.389817 CGCCTCGTCCTCATGTTGAA 60.390 55.000 0.00 0.00 0.00 2.69
2258 2321 1.808411 GCCTCGTCCTCATGTTGAAA 58.192 50.000 0.00 0.00 0.00 2.69
2259 2322 2.359900 GCCTCGTCCTCATGTTGAAAT 58.640 47.619 0.00 0.00 0.00 2.17
2260 2323 2.352960 GCCTCGTCCTCATGTTGAAATC 59.647 50.000 0.00 0.00 0.00 2.17
2261 2324 3.866651 CCTCGTCCTCATGTTGAAATCT 58.133 45.455 0.00 0.00 0.00 2.40
2262 2325 4.256920 CCTCGTCCTCATGTTGAAATCTT 58.743 43.478 0.00 0.00 0.00 2.40
2263 2326 4.093998 CCTCGTCCTCATGTTGAAATCTTG 59.906 45.833 0.00 0.00 0.00 3.02
2264 2327 4.641396 TCGTCCTCATGTTGAAATCTTGT 58.359 39.130 0.00 0.00 0.00 3.16
2265 2328 4.690748 TCGTCCTCATGTTGAAATCTTGTC 59.309 41.667 0.00 0.00 0.00 3.18
2266 2329 4.142816 CGTCCTCATGTTGAAATCTTGTCC 60.143 45.833 0.00 0.00 0.00 4.02
2267 2330 4.761739 GTCCTCATGTTGAAATCTTGTCCA 59.238 41.667 0.00 0.00 0.00 4.02
2268 2331 5.241506 GTCCTCATGTTGAAATCTTGTCCAA 59.758 40.000 0.00 0.00 0.00 3.53
2269 2332 5.474532 TCCTCATGTTGAAATCTTGTCCAAG 59.525 40.000 0.47 0.47 39.71 3.61
2280 2343 4.543590 TCTTGTCCAAGAGATTCACCTC 57.456 45.455 5.64 0.00 42.06 3.85
2281 2344 3.056536 TCTTGTCCAAGAGATTCACCTCG 60.057 47.826 5.64 0.00 42.06 4.63
2282 2345 1.066858 TGTCCAAGAGATTCACCTCGC 60.067 52.381 0.00 0.00 38.19 5.03
2283 2346 1.205893 GTCCAAGAGATTCACCTCGCT 59.794 52.381 0.00 0.00 38.19 4.93
2284 2347 1.478510 TCCAAGAGATTCACCTCGCTC 59.521 52.381 0.00 0.00 38.19 5.03
2285 2348 1.205655 CCAAGAGATTCACCTCGCTCA 59.794 52.381 0.00 0.00 38.19 4.26
2286 2349 2.538437 CAAGAGATTCACCTCGCTCAG 58.462 52.381 0.00 0.00 38.19 3.35
2287 2350 0.459489 AGAGATTCACCTCGCTCAGC 59.541 55.000 0.00 0.00 38.19 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.492137 GCCGGGAATGTTAGACTTATCGT 60.492 47.826 2.18 0.00 0.00 3.73
58 59 3.057734 GCCGGGAATGTTAGACTTATCG 58.942 50.000 2.18 0.00 0.00 2.92
95 96 0.317479 GCCGTGACTAACAGACCACT 59.683 55.000 0.00 0.00 0.00 4.00
101 102 0.530744 TAGCTGGCCGTGACTAACAG 59.469 55.000 0.00 0.00 0.00 3.16
103 104 2.088950 TTTAGCTGGCCGTGACTAAC 57.911 50.000 0.00 0.00 0.00 2.34
154 155 8.618240 TTTATATTCCTTGAGGAGGTTCTACA 57.382 34.615 0.00 0.00 46.36 2.74
271 272 0.108615 CAACCGTTTTGCACCCACAA 60.109 50.000 0.00 0.00 0.00 3.33
323 324 6.153924 AGGTCAACATCTATAAAGGATCCCT 58.846 40.000 8.55 0.00 33.87 4.20
446 484 6.874664 GGAGTAGACCTCAACTTTAAAAGGAG 59.125 42.308 10.08 6.96 42.40 3.69
469 507 1.203428 TCCTTCCATGGACAAGAGGGA 60.203 52.381 24.16 16.75 33.76 4.20
559 598 2.539302 CCCATGAAACAGGGTGGATTT 58.461 47.619 0.00 0.00 40.34 2.17
676 721 6.903534 AGTCTAATGAAACTAATCCTCCCAGA 59.096 38.462 0.00 0.00 0.00 3.86
695 740 4.020839 CCCCTAGAACGGAACAAAGTCTAA 60.021 45.833 0.00 0.00 0.00 2.10
699 744 1.350019 CCCCCTAGAACGGAACAAAGT 59.650 52.381 0.00 0.00 0.00 2.66
771 816 3.308832 GGGTTAGTGGGGATTGAATGACA 60.309 47.826 0.00 0.00 0.00 3.58
823 877 3.078837 GGCTGAAGGTTTAACCGAATGA 58.921 45.455 8.63 0.00 44.90 2.57
858 912 9.559732 TTATATGACAAAGCAGCACAATAGTAT 57.440 29.630 0.00 0.00 0.00 2.12
864 918 6.816134 TCTTTATATGACAAAGCAGCACAA 57.184 33.333 0.00 0.00 33.82 3.33
895 949 6.934645 AGAGCAGCACAATAGTAAGTTTTACA 59.065 34.615 0.00 0.00 0.00 2.41
896 950 7.095187 ACAGAGCAGCACAATAGTAAGTTTTAC 60.095 37.037 0.00 0.00 0.00 2.01
969 1023 0.462759 GGGCAAGACCGAATCTGAGG 60.463 60.000 0.00 0.00 37.88 3.86
1113 1170 8.876275 ACCTACAAATAGTAAAATCGCGAATA 57.124 30.769 15.24 3.99 30.92 1.75
1117 1174 7.457868 TCAAACCTACAAATAGTAAAATCGCG 58.542 34.615 0.00 0.00 30.92 5.87
1201 1258 5.295431 TCAAGCAAATCATACGTCAAAGG 57.705 39.130 0.00 0.00 0.00 3.11
1325 1383 8.247562 ACACAACAGTACTTGAAAGCATTTTTA 58.752 29.630 1.53 0.00 39.27 1.52
1440 1500 0.875059 GTTGCTGCTGGTCCTTGTAC 59.125 55.000 0.00 0.00 0.00 2.90
1455 1517 1.005294 CAATGCTTGGCGACTGTTGC 61.005 55.000 11.66 11.66 0.00 4.17
1512 1574 5.890419 TGCACATGGATGTTATATGTTGGAA 59.110 36.000 0.00 0.00 39.39 3.53
1513 1575 5.444176 TGCACATGGATGTTATATGTTGGA 58.556 37.500 0.00 0.00 39.39 3.53
1514 1576 5.771153 TGCACATGGATGTTATATGTTGG 57.229 39.130 0.00 0.00 39.39 3.77
1515 1577 6.972722 TGATGCACATGGATGTTATATGTTG 58.027 36.000 0.00 0.00 39.39 3.33
1516 1578 7.585579 TTGATGCACATGGATGTTATATGTT 57.414 32.000 0.00 0.00 39.39 2.71
1517 1579 7.449086 TCATTGATGCACATGGATGTTATATGT 59.551 33.333 0.00 0.00 39.39 2.29
1518 1580 7.822658 TCATTGATGCACATGGATGTTATATG 58.177 34.615 0.00 0.00 39.39 1.78
1582 1644 8.945193 TCTGAAATACCCTATGGCTTAATTAGT 58.055 33.333 0.00 0.00 33.59 2.24
1602 1664 4.326826 AGATGCTCGTTGGAATTCTGAAA 58.673 39.130 5.23 0.00 0.00 2.69
1628 1690 1.135112 TCGATGAGATGTTCACCACCG 60.135 52.381 0.00 0.00 38.99 4.94
1634 1696 2.224137 GCCATCCTCGATGAGATGTTCA 60.224 50.000 15.18 0.00 42.09 3.18
1663 1725 6.491062 TGCTATATTTTGCAACTGGCTATGAT 59.509 34.615 0.00 0.00 45.15 2.45
1664 1726 5.827267 TGCTATATTTTGCAACTGGCTATGA 59.173 36.000 0.00 0.00 45.15 2.15
1668 1730 3.181497 CGTGCTATATTTTGCAACTGGCT 60.181 43.478 0.00 0.00 45.15 4.75
1739 1801 1.729838 GCGTCAGACTTTCGCGAGT 60.730 57.895 9.59 4.44 40.51 4.18
1920 1983 0.658897 TCAAAAGCGTCGGGTTTCAC 59.341 50.000 0.00 0.00 42.66 3.18
1939 2002 2.285144 ACCCCGACCGATCCCTTT 60.285 61.111 0.00 0.00 0.00 3.11
1964 2027 5.346181 TTTTTCTTGGTTAAACCCACAGG 57.654 39.130 0.00 0.00 37.50 4.00
1984 2047 7.066781 TCTTCAAGGGAGTAAAATGGACTTTT 58.933 34.615 0.00 0.00 40.21 2.27
1985 2048 6.610830 TCTTCAAGGGAGTAAAATGGACTTT 58.389 36.000 0.00 0.00 0.00 2.66
1986 2049 6.200878 TCTTCAAGGGAGTAAAATGGACTT 57.799 37.500 0.00 0.00 0.00 3.01
1987 2050 5.843019 TCTTCAAGGGAGTAAAATGGACT 57.157 39.130 0.00 0.00 0.00 3.85
1988 2051 6.894339 TTTCTTCAAGGGAGTAAAATGGAC 57.106 37.500 0.00 0.00 0.00 4.02
1989 2052 7.895759 CATTTTCTTCAAGGGAGTAAAATGGA 58.104 34.615 11.07 0.00 39.80 3.41
1990 2053 7.099120 CCATTTTCTTCAAGGGAGTAAAATGG 58.901 38.462 18.75 18.75 46.55 3.16
1991 2054 7.099120 CCCATTTTCTTCAAGGGAGTAAAATG 58.901 38.462 11.64 11.64 42.25 2.32
1992 2055 6.787458 ACCCATTTTCTTCAAGGGAGTAAAAT 59.213 34.615 2.29 0.00 42.25 1.82
1993 2056 6.140377 ACCCATTTTCTTCAAGGGAGTAAAA 58.860 36.000 2.29 0.00 42.25 1.52
1994 2057 5.711698 ACCCATTTTCTTCAAGGGAGTAAA 58.288 37.500 2.29 0.00 42.25 2.01
1995 2058 5.333566 ACCCATTTTCTTCAAGGGAGTAA 57.666 39.130 2.29 0.00 42.25 2.24
1996 2059 5.076873 CAACCCATTTTCTTCAAGGGAGTA 58.923 41.667 2.29 0.00 42.25 2.59
1997 2060 3.897505 CAACCCATTTTCTTCAAGGGAGT 59.102 43.478 2.29 0.00 42.25 3.85
1998 2061 3.897505 ACAACCCATTTTCTTCAAGGGAG 59.102 43.478 2.29 0.00 42.25 4.30
1999 2062 3.922375 ACAACCCATTTTCTTCAAGGGA 58.078 40.909 2.29 0.00 42.25 4.20
2000 2063 4.631131 GAACAACCCATTTTCTTCAAGGG 58.369 43.478 0.00 0.00 45.20 3.95
2001 2064 4.298332 CGAACAACCCATTTTCTTCAAGG 58.702 43.478 0.00 0.00 0.00 3.61
2002 2065 3.735746 GCGAACAACCCATTTTCTTCAAG 59.264 43.478 0.00 0.00 0.00 3.02
2003 2066 3.131223 TGCGAACAACCCATTTTCTTCAA 59.869 39.130 0.00 0.00 0.00 2.69
2004 2067 2.690497 TGCGAACAACCCATTTTCTTCA 59.310 40.909 0.00 0.00 0.00 3.02
2005 2068 3.363341 TGCGAACAACCCATTTTCTTC 57.637 42.857 0.00 0.00 0.00 2.87
2006 2069 5.227152 GTTATGCGAACAACCCATTTTCTT 58.773 37.500 0.00 0.00 0.00 2.52
2007 2070 4.321675 GGTTATGCGAACAACCCATTTTCT 60.322 41.667 0.00 0.00 38.63 2.52
2008 2071 3.924073 GGTTATGCGAACAACCCATTTTC 59.076 43.478 0.00 0.00 38.63 2.29
2009 2072 3.920446 GGTTATGCGAACAACCCATTTT 58.080 40.909 0.00 0.00 38.63 1.82
2010 2073 3.586100 GGTTATGCGAACAACCCATTT 57.414 42.857 0.00 0.00 38.63 2.32
2015 2078 1.201414 CAAGGGGTTATGCGAACAACC 59.799 52.381 0.00 0.00 42.94 3.77
2016 2079 2.156098 TCAAGGGGTTATGCGAACAAC 58.844 47.619 3.96 0.00 0.00 3.32
2017 2080 2.554893 GTTCAAGGGGTTATGCGAACAA 59.445 45.455 3.96 0.00 34.35 2.83
2018 2081 2.156098 GTTCAAGGGGTTATGCGAACA 58.844 47.619 3.96 0.00 34.35 3.18
2019 2082 2.433436 AGTTCAAGGGGTTATGCGAAC 58.567 47.619 0.00 0.00 34.38 3.95
2020 2083 2.871096 AGTTCAAGGGGTTATGCGAA 57.129 45.000 0.00 0.00 0.00 4.70
2021 2084 2.871096 AAGTTCAAGGGGTTATGCGA 57.129 45.000 0.00 0.00 0.00 5.10
2022 2085 3.934457 AAAAGTTCAAGGGGTTATGCG 57.066 42.857 0.00 0.00 0.00 4.73
2044 2107 4.611367 TCAGGGGGTTAAGTGAACAAAAA 58.389 39.130 0.00 0.00 40.09 1.94
2045 2108 4.252570 TCAGGGGGTTAAGTGAACAAAA 57.747 40.909 0.00 0.00 40.09 2.44
2046 2109 3.955524 TCAGGGGGTTAAGTGAACAAA 57.044 42.857 0.00 0.00 40.09 2.83
2047 2110 3.655777 AGATCAGGGGGTTAAGTGAACAA 59.344 43.478 0.00 0.00 40.09 2.83
2048 2111 3.256704 AGATCAGGGGGTTAAGTGAACA 58.743 45.455 0.00 0.00 40.09 3.18
2049 2112 5.454897 GGATAGATCAGGGGGTTAAGTGAAC 60.455 48.000 0.00 0.00 37.31 3.18
2050 2113 4.658901 GGATAGATCAGGGGGTTAAGTGAA 59.341 45.833 0.00 0.00 0.00 3.18
2051 2114 4.232091 GGATAGATCAGGGGGTTAAGTGA 58.768 47.826 0.00 0.00 0.00 3.41
2052 2115 3.973973 TGGATAGATCAGGGGGTTAAGTG 59.026 47.826 0.00 0.00 0.00 3.16
2053 2116 4.295905 TGGATAGATCAGGGGGTTAAGT 57.704 45.455 0.00 0.00 0.00 2.24
2054 2117 5.850046 ATTGGATAGATCAGGGGGTTAAG 57.150 43.478 0.00 0.00 0.00 1.85
2055 2118 5.550403 GGTATTGGATAGATCAGGGGGTTAA 59.450 44.000 0.00 0.00 0.00 2.01
2056 2119 5.098663 GGTATTGGATAGATCAGGGGGTTA 58.901 45.833 0.00 0.00 0.00 2.85
2057 2120 3.916989 GGTATTGGATAGATCAGGGGGTT 59.083 47.826 0.00 0.00 0.00 4.11
2058 2121 3.532102 GGTATTGGATAGATCAGGGGGT 58.468 50.000 0.00 0.00 0.00 4.95
2059 2122 2.501723 CGGTATTGGATAGATCAGGGGG 59.498 54.545 0.00 0.00 0.00 5.40
2060 2123 3.173965 ACGGTATTGGATAGATCAGGGG 58.826 50.000 0.00 0.00 0.00 4.79
2061 2124 4.283467 TGAACGGTATTGGATAGATCAGGG 59.717 45.833 0.00 0.00 0.00 4.45
2062 2125 5.243954 TCTGAACGGTATTGGATAGATCAGG 59.756 44.000 0.00 0.00 34.14 3.86
2063 2126 6.332735 TCTGAACGGTATTGGATAGATCAG 57.667 41.667 0.00 0.00 34.54 2.90
2064 2127 6.724893 TTCTGAACGGTATTGGATAGATCA 57.275 37.500 0.00 0.00 0.00 2.92
2065 2128 9.706691 TTATTTCTGAACGGTATTGGATAGATC 57.293 33.333 0.00 0.00 0.00 2.75
2067 2130 9.706691 GATTATTTCTGAACGGTATTGGATAGA 57.293 33.333 0.00 0.00 0.00 1.98
2068 2131 9.712305 AGATTATTTCTGAACGGTATTGGATAG 57.288 33.333 0.00 0.00 31.79 2.08
2070 2133 8.840321 CAAGATTATTTCTGAACGGTATTGGAT 58.160 33.333 0.00 0.00 33.93 3.41
2071 2134 7.282224 CCAAGATTATTTCTGAACGGTATTGGA 59.718 37.037 11.23 0.00 33.93 3.53
2072 2135 7.417612 CCAAGATTATTTCTGAACGGTATTGG 58.582 38.462 0.00 0.00 33.93 3.16
2073 2136 7.417612 CCCAAGATTATTTCTGAACGGTATTG 58.582 38.462 0.00 0.00 33.93 1.90
2074 2137 6.039382 GCCCAAGATTATTTCTGAACGGTATT 59.961 38.462 0.00 0.00 33.93 1.89
2075 2138 5.531287 GCCCAAGATTATTTCTGAACGGTAT 59.469 40.000 0.00 0.00 33.93 2.73
2076 2139 4.879545 GCCCAAGATTATTTCTGAACGGTA 59.120 41.667 0.00 0.00 33.93 4.02
2077 2140 3.694566 GCCCAAGATTATTTCTGAACGGT 59.305 43.478 0.00 0.00 33.93 4.83
2078 2141 3.242739 CGCCCAAGATTATTTCTGAACGG 60.243 47.826 0.00 0.00 33.93 4.44
2079 2142 3.242739 CCGCCCAAGATTATTTCTGAACG 60.243 47.826 0.00 0.00 33.93 3.95
2080 2143 3.945285 TCCGCCCAAGATTATTTCTGAAC 59.055 43.478 0.00 0.00 33.93 3.18
2081 2144 4.229304 TCCGCCCAAGATTATTTCTGAA 57.771 40.909 0.00 0.00 33.93 3.02
2082 2145 3.924114 TCCGCCCAAGATTATTTCTGA 57.076 42.857 0.00 0.00 33.93 3.27
2083 2146 5.520376 AAATCCGCCCAAGATTATTTCTG 57.480 39.130 0.00 0.00 32.80 3.02
2084 2147 5.893824 AGAAAATCCGCCCAAGATTATTTCT 59.106 36.000 0.00 0.00 32.80 2.52
2085 2148 6.149129 AGAAAATCCGCCCAAGATTATTTC 57.851 37.500 0.00 0.00 32.80 2.17
2086 2149 5.221048 CGAGAAAATCCGCCCAAGATTATTT 60.221 40.000 0.00 0.00 32.80 1.40
2087 2150 4.275936 CGAGAAAATCCGCCCAAGATTATT 59.724 41.667 0.00 0.00 32.80 1.40
2088 2151 3.815401 CGAGAAAATCCGCCCAAGATTAT 59.185 43.478 0.00 0.00 32.80 1.28
2089 2152 3.202906 CGAGAAAATCCGCCCAAGATTA 58.797 45.455 0.00 0.00 32.80 1.75
2090 2153 2.017049 CGAGAAAATCCGCCCAAGATT 58.983 47.619 0.00 0.00 35.46 2.40
2091 2154 1.668419 CGAGAAAATCCGCCCAAGAT 58.332 50.000 0.00 0.00 0.00 2.40
2092 2155 0.392461 CCGAGAAAATCCGCCCAAGA 60.392 55.000 0.00 0.00 0.00 3.02
2093 2156 1.376609 CCCGAGAAAATCCGCCCAAG 61.377 60.000 0.00 0.00 0.00 3.61
2094 2157 1.377987 CCCGAGAAAATCCGCCCAA 60.378 57.895 0.00 0.00 0.00 4.12
2095 2158 2.270850 CCCGAGAAAATCCGCCCA 59.729 61.111 0.00 0.00 0.00 5.36
2096 2159 2.112815 CACCCGAGAAAATCCGCCC 61.113 63.158 0.00 0.00 0.00 6.13
2097 2160 2.112815 CCACCCGAGAAAATCCGCC 61.113 63.158 0.00 0.00 0.00 6.13
2098 2161 0.958876 AACCACCCGAGAAAATCCGC 60.959 55.000 0.00 0.00 0.00 5.54
2099 2162 1.199097 CAAACCACCCGAGAAAATCCG 59.801 52.381 0.00 0.00 0.00 4.18
2100 2163 1.067846 GCAAACCACCCGAGAAAATCC 60.068 52.381 0.00 0.00 0.00 3.01
2101 2164 1.886542 AGCAAACCACCCGAGAAAATC 59.113 47.619 0.00 0.00 0.00 2.17
2102 2165 1.613437 CAGCAAACCACCCGAGAAAAT 59.387 47.619 0.00 0.00 0.00 1.82
2103 2166 1.028905 CAGCAAACCACCCGAGAAAA 58.971 50.000 0.00 0.00 0.00 2.29
2104 2167 0.181587 TCAGCAAACCACCCGAGAAA 59.818 50.000 0.00 0.00 0.00 2.52
2105 2168 0.534203 GTCAGCAAACCACCCGAGAA 60.534 55.000 0.00 0.00 0.00 2.87
2106 2169 1.070786 GTCAGCAAACCACCCGAGA 59.929 57.895 0.00 0.00 0.00 4.04
2107 2170 2.317609 CGTCAGCAAACCACCCGAG 61.318 63.158 0.00 0.00 0.00 4.63
2108 2171 2.280524 CGTCAGCAAACCACCCGA 60.281 61.111 0.00 0.00 0.00 5.14
2109 2172 2.590575 ACGTCAGCAAACCACCCG 60.591 61.111 0.00 0.00 0.00 5.28
2110 2173 2.551912 CCACGTCAGCAAACCACCC 61.552 63.158 0.00 0.00 0.00 4.61
2111 2174 1.525077 TCCACGTCAGCAAACCACC 60.525 57.895 0.00 0.00 0.00 4.61
2112 2175 1.092921 TGTCCACGTCAGCAAACCAC 61.093 55.000 0.00 0.00 0.00 4.16
2113 2176 0.179032 ATGTCCACGTCAGCAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
2114 2177 0.951558 AATGTCCACGTCAGCAAACC 59.048 50.000 0.00 0.00 0.00 3.27
2115 2178 1.333619 ACAATGTCCACGTCAGCAAAC 59.666 47.619 0.00 0.00 0.00 2.93
2116 2179 1.601903 GACAATGTCCACGTCAGCAAA 59.398 47.619 1.10 0.00 0.00 3.68
2117 2180 1.225855 GACAATGTCCACGTCAGCAA 58.774 50.000 1.10 0.00 0.00 3.91
2118 2181 0.105778 TGACAATGTCCACGTCAGCA 59.894 50.000 11.24 0.00 34.83 4.41
2119 2182 1.225855 TTGACAATGTCCACGTCAGC 58.774 50.000 11.24 0.00 40.52 4.26
2120 2183 2.872245 ACTTTGACAATGTCCACGTCAG 59.128 45.455 11.24 0.00 40.52 3.51
2121 2184 2.611751 CACTTTGACAATGTCCACGTCA 59.388 45.455 11.24 0.00 37.87 4.35
2122 2185 2.032030 CCACTTTGACAATGTCCACGTC 60.032 50.000 11.24 0.00 0.00 4.34
2123 2186 1.946768 CCACTTTGACAATGTCCACGT 59.053 47.619 11.24 0.60 0.00 4.49
2124 2187 1.946768 ACCACTTTGACAATGTCCACG 59.053 47.619 11.24 0.00 0.00 4.94
2125 2188 4.111916 CAAACCACTTTGACAATGTCCAC 58.888 43.478 11.24 0.00 39.43 4.02
2126 2189 3.766591 ACAAACCACTTTGACAATGTCCA 59.233 39.130 11.24 0.00 39.43 4.02
2127 2190 4.385358 ACAAACCACTTTGACAATGTCC 57.615 40.909 11.24 0.00 39.43 4.02
2128 2191 5.288472 GTCAACAAACCACTTTGACAATGTC 59.712 40.000 6.41 6.41 45.60 3.06
2129 2192 5.167845 GTCAACAAACCACTTTGACAATGT 58.832 37.500 8.46 1.02 45.60 2.71
2130 2193 5.701029 GTCAACAAACCACTTTGACAATG 57.299 39.130 8.46 0.00 45.60 2.82
2134 2197 3.859411 TGGTCAACAAACCACTTTGAC 57.141 42.857 5.33 5.33 44.40 3.18
2142 2205 0.105964 GCCCCTTTGGTCAACAAACC 59.894 55.000 0.00 0.00 43.81 3.27
2143 2206 0.105964 GGCCCCTTTGGTCAACAAAC 59.894 55.000 0.00 0.00 43.81 2.93
2144 2207 0.031616 AGGCCCCTTTGGTCAACAAA 60.032 50.000 0.00 0.00 46.34 2.83
2145 2208 0.031616 AAGGCCCCTTTGGTCAACAA 60.032 50.000 0.00 0.00 43.21 2.83
2146 2209 0.758685 CAAGGCCCCTTTGGTCAACA 60.759 55.000 0.00 0.00 43.21 3.33
2147 2210 0.759060 ACAAGGCCCCTTTGGTCAAC 60.759 55.000 0.00 0.00 43.21 3.18
2148 2211 0.758685 CACAAGGCCCCTTTGGTCAA 60.759 55.000 0.00 0.00 43.21 3.18
2149 2212 1.152567 CACAAGGCCCCTTTGGTCA 60.153 57.895 0.00 0.00 43.21 4.02
2150 2213 1.908299 CCACAAGGCCCCTTTGGTC 60.908 63.158 0.00 0.00 39.93 4.02
2151 2214 2.201210 CCACAAGGCCCCTTTGGT 59.799 61.111 0.00 3.31 33.42 3.67
2152 2215 1.908299 GACCACAAGGCCCCTTTGG 60.908 63.158 18.51 18.51 38.71 3.28
2153 2216 1.152567 TGACCACAAGGCCCCTTTG 60.153 57.895 0.00 0.00 39.06 2.77
2154 2217 1.153756 CTGACCACAAGGCCCCTTT 59.846 57.895 0.00 0.00 39.06 3.11
2155 2218 2.845345 CCTGACCACAAGGCCCCTT 61.845 63.158 0.00 0.00 39.06 3.95
2156 2219 3.260100 CCTGACCACAAGGCCCCT 61.260 66.667 0.00 0.00 39.06 4.79
2157 2220 3.580319 ACCTGACCACAAGGCCCC 61.580 66.667 0.00 0.00 39.06 5.80
2158 2221 2.282462 CACCTGACCACAAGGCCC 60.282 66.667 0.00 0.00 39.06 5.80
2159 2222 0.890996 CTTCACCTGACCACAAGGCC 60.891 60.000 0.00 0.00 39.06 5.19
2160 2223 0.108585 TCTTCACCTGACCACAAGGC 59.891 55.000 0.00 0.00 39.06 4.35
2161 2224 1.879796 GCTCTTCACCTGACCACAAGG 60.880 57.143 0.00 0.00 42.21 3.61
2162 2225 1.517242 GCTCTTCACCTGACCACAAG 58.483 55.000 0.00 0.00 0.00 3.16
2163 2226 0.249868 CGCTCTTCACCTGACCACAA 60.250 55.000 0.00 0.00 0.00 3.33
2164 2227 1.367471 CGCTCTTCACCTGACCACA 59.633 57.895 0.00 0.00 0.00 4.17
2165 2228 2.029844 GCGCTCTTCACCTGACCAC 61.030 63.158 0.00 0.00 0.00 4.16
2166 2229 2.343758 GCGCTCTTCACCTGACCA 59.656 61.111 0.00 0.00 0.00 4.02
2167 2230 1.739562 CTGCGCTCTTCACCTGACC 60.740 63.158 9.73 0.00 0.00 4.02
2168 2231 2.386660 GCTGCGCTCTTCACCTGAC 61.387 63.158 9.73 0.00 0.00 3.51
2169 2232 2.047844 GCTGCGCTCTTCACCTGA 60.048 61.111 9.73 0.00 0.00 3.86
2170 2233 3.123620 GGCTGCGCTCTTCACCTG 61.124 66.667 9.73 0.00 0.00 4.00
2171 2234 4.749310 CGGCTGCGCTCTTCACCT 62.749 66.667 9.73 0.00 0.00 4.00
2185 2248 3.869272 CATGAACTGAGCGCCGGC 61.869 66.667 19.07 19.07 40.37 6.13
2186 2249 3.869272 GCATGAACTGAGCGCCGG 61.869 66.667 2.29 0.00 0.00 6.13
2187 2250 3.869272 GGCATGAACTGAGCGCCG 61.869 66.667 2.29 0.00 32.14 6.46
2188 2251 3.869272 CGGCATGAACTGAGCGCC 61.869 66.667 2.29 0.00 39.45 6.53
2189 2252 2.176273 ATCGGCATGAACTGAGCGC 61.176 57.895 0.00 0.00 0.00 5.92
2190 2253 1.640069 CATCGGCATGAACTGAGCG 59.360 57.895 0.00 0.00 30.57 5.03
2191 2254 0.745845 ACCATCGGCATGAACTGAGC 60.746 55.000 0.00 0.00 30.57 4.26
2192 2255 1.012086 CACCATCGGCATGAACTGAG 58.988 55.000 0.00 0.00 30.57 3.35
2193 2256 0.324614 ACACCATCGGCATGAACTGA 59.675 50.000 0.00 0.00 30.57 3.41
2194 2257 1.135603 CAACACCATCGGCATGAACTG 60.136 52.381 0.00 0.00 30.57 3.16
2195 2258 1.167851 CAACACCATCGGCATGAACT 58.832 50.000 0.00 0.00 30.57 3.01
2196 2259 0.881118 ACAACACCATCGGCATGAAC 59.119 50.000 0.00 0.00 30.57 3.18
2197 2260 1.164411 GACAACACCATCGGCATGAA 58.836 50.000 0.00 0.00 30.57 2.57
2198 2261 1.018752 CGACAACACCATCGGCATGA 61.019 55.000 0.00 0.00 34.67 3.07
2199 2262 1.298157 ACGACAACACCATCGGCATG 61.298 55.000 0.00 0.00 42.67 4.06
2200 2263 0.605319 AACGACAACACCATCGGCAT 60.605 50.000 0.00 0.00 42.67 4.40
2201 2264 1.225376 GAACGACAACACCATCGGCA 61.225 55.000 0.00 0.00 42.67 5.69
2202 2265 0.949105 AGAACGACAACACCATCGGC 60.949 55.000 0.00 0.00 42.67 5.54
2203 2266 1.459592 GAAGAACGACAACACCATCGG 59.540 52.381 0.00 0.00 42.67 4.18
2204 2267 1.124297 CGAAGAACGACAACACCATCG 59.876 52.381 0.00 0.00 45.77 3.84
2205 2268 2.132762 ACGAAGAACGACAACACCATC 58.867 47.619 0.00 0.00 45.77 3.51
2206 2269 2.132762 GACGAAGAACGACAACACCAT 58.867 47.619 0.00 0.00 45.77 3.55
2207 2270 1.563111 GACGAAGAACGACAACACCA 58.437 50.000 0.00 0.00 45.77 4.17
2208 2271 0.857287 GGACGAAGAACGACAACACC 59.143 55.000 0.00 0.00 45.77 4.16
2209 2272 0.501435 CGGACGAAGAACGACAACAC 59.499 55.000 0.00 0.00 45.77 3.32
2210 2273 1.210545 GCGGACGAAGAACGACAACA 61.211 55.000 0.00 0.00 45.77 3.33
2211 2274 1.485943 GCGGACGAAGAACGACAAC 59.514 57.895 0.00 0.00 45.77 3.32
2212 2275 2.012414 CGCGGACGAAGAACGACAA 61.012 57.895 0.00 0.00 45.77 3.18
2213 2276 2.427905 CGCGGACGAAGAACGACA 60.428 61.111 0.00 0.00 45.77 4.35
2214 2277 3.824510 GCGCGGACGAAGAACGAC 61.825 66.667 8.83 0.00 45.77 4.34
2233 2296 2.851071 ATGAGGACGAGGCGCTAGC 61.851 63.158 7.64 4.06 44.18 3.42
2234 2297 1.007964 CATGAGGACGAGGCGCTAG 60.008 63.158 7.64 0.98 0.00 3.42
2235 2298 1.320344 AACATGAGGACGAGGCGCTA 61.320 55.000 7.64 0.00 0.00 4.26
2236 2299 2.650116 AACATGAGGACGAGGCGCT 61.650 57.895 7.64 0.00 0.00 5.92
2237 2300 2.125512 AACATGAGGACGAGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
2238 2301 0.389817 TTCAACATGAGGACGAGGCG 60.390 55.000 0.00 0.00 0.00 5.52
2239 2302 1.808411 TTTCAACATGAGGACGAGGC 58.192 50.000 0.00 0.00 0.00 4.70
2240 2303 3.866651 AGATTTCAACATGAGGACGAGG 58.133 45.455 0.00 0.00 0.00 4.63
2241 2304 4.692625 ACAAGATTTCAACATGAGGACGAG 59.307 41.667 0.00 0.00 0.00 4.18
2242 2305 4.641396 ACAAGATTTCAACATGAGGACGA 58.359 39.130 0.00 0.00 0.00 4.20
2243 2306 4.142816 GGACAAGATTTCAACATGAGGACG 60.143 45.833 0.00 0.00 0.00 4.79
2244 2307 4.761739 TGGACAAGATTTCAACATGAGGAC 59.238 41.667 0.00 0.00 0.00 3.85
2245 2308 4.984295 TGGACAAGATTTCAACATGAGGA 58.016 39.130 0.00 0.00 0.00 3.71
2246 2309 5.474532 TCTTGGACAAGATTTCAACATGAGG 59.525 40.000 10.52 0.00 42.06 3.86
2247 2310 6.429078 TCTCTTGGACAAGATTTCAACATGAG 59.571 38.462 14.50 0.00 45.40 2.90
2248 2311 6.298361 TCTCTTGGACAAGATTTCAACATGA 58.702 36.000 14.50 3.56 45.40 3.07
2249 2312 6.564709 TCTCTTGGACAAGATTTCAACATG 57.435 37.500 14.50 0.00 45.40 3.21
2250 2313 7.449395 TGAATCTCTTGGACAAGATTTCAACAT 59.551 33.333 23.72 7.18 45.40 2.71
2251 2314 6.772233 TGAATCTCTTGGACAAGATTTCAACA 59.228 34.615 23.72 14.55 45.40 3.33
2252 2315 7.080724 GTGAATCTCTTGGACAAGATTTCAAC 58.919 38.462 25.63 19.81 45.40 3.18
2253 2316 6.207417 GGTGAATCTCTTGGACAAGATTTCAA 59.793 38.462 25.63 15.76 45.40 2.69
2254 2317 5.707298 GGTGAATCTCTTGGACAAGATTTCA 59.293 40.000 22.92 22.92 45.40 2.69
2255 2318 5.942826 AGGTGAATCTCTTGGACAAGATTTC 59.057 40.000 14.50 17.97 45.40 2.17
2256 2319 5.885465 AGGTGAATCTCTTGGACAAGATTT 58.115 37.500 14.50 11.36 45.40 2.17
2257 2320 5.495640 GAGGTGAATCTCTTGGACAAGATT 58.504 41.667 14.50 7.74 45.40 2.40
2258 2321 4.382470 CGAGGTGAATCTCTTGGACAAGAT 60.382 45.833 14.50 1.10 45.40 2.40
2259 2322 3.056536 CGAGGTGAATCTCTTGGACAAGA 60.057 47.826 13.56 13.56 44.47 3.02
2260 2323 3.257393 CGAGGTGAATCTCTTGGACAAG 58.743 50.000 5.72 5.72 39.71 3.16
2261 2324 2.612972 GCGAGGTGAATCTCTTGGACAA 60.613 50.000 0.00 0.00 0.00 3.18
2262 2325 1.066858 GCGAGGTGAATCTCTTGGACA 60.067 52.381 0.00 0.00 0.00 4.02
2263 2326 1.205893 AGCGAGGTGAATCTCTTGGAC 59.794 52.381 0.00 0.00 0.00 4.02
2264 2327 1.478510 GAGCGAGGTGAATCTCTTGGA 59.521 52.381 0.00 0.00 0.00 3.53
2265 2328 1.205655 TGAGCGAGGTGAATCTCTTGG 59.794 52.381 0.00 0.00 0.00 3.61
2266 2329 2.538437 CTGAGCGAGGTGAATCTCTTG 58.462 52.381 0.00 0.00 0.00 3.02
2267 2330 1.134848 GCTGAGCGAGGTGAATCTCTT 60.135 52.381 0.00 0.00 0.00 2.85
2268 2331 0.459489 GCTGAGCGAGGTGAATCTCT 59.541 55.000 0.00 0.00 0.00 3.10
2269 2332 2.970576 GCTGAGCGAGGTGAATCTC 58.029 57.895 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.