>input_sequence_84917
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ATGGGATGCAACGAACTCGTTATTAATTATGACAATCTTGAGGTCATTGACACTATGAAGACGGGTG
GTCATTCCTCGGGGGCGGCGGCG---GTTTTCGACGACTGTTATCATTCTATTCGCGATTTTACTATTTGTAGGTTTGAA
CATTATAATAGGGAAGCAAATAAAGTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTCCTTTGACGTATGATTTGCTTGA
GGAGCCTCCAATTGAACTTGTACCCTTTCTCATAAATGATATAACTATTATTTCAAATGAATAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr5A_1_TraesCS5A01G139600
GAATATGATTACTCCGGCATGGGCTACGTGAGCTCCAAGTAGGTTTACCAGACAAAAACGATAAGTCTAACATTCCCGGC
TAACCAAGCAAAGCCAGTGGTCTGTTAGTCACGGCCAGCTAAAACAAAAGTTTCACTAAAGAGTGTTTCCACGTTGTAGA
ACCTCCTCAAGGAATATAAAATTTTCATGATGCTGTTCTAGAGCTACCATCCATGCACGAATACCCTCGTTTAAAAGAAT
AATTCGCTGAACGAAGAAAAAACACATTCATTTGTGGGTGCAAAACGGTTGTGAAACTATCAAAGAAAAATAAAAACACA
ACTAGGGATCCTTTATAGATGTTGACCTTTGTCTAACTACCAGTC-----------------------------------
--AATTCACCTAGAATCCTAGATAAAAGTTAAAATAGTTAATAGAGATGGACCCACCTACATCAGACTAAATAAATATTG
ACACTCCTTTTAAAGTTGAGGTCTACTCCCTCTTGTCCATGGAAGGACATGTGAACTCACCACTTGGGTGAGTGATGTGT
GTGTTTGGTTGAGGCCGGGACGGGGAA-GTCCCGGCCAAATCCACCCTGTTTCATGGGGT------GGGTGGGGGGGGGG
ACTCCTCTGAAGCCGTTGAATGAAACCCACTTCAAAGTTCAGGGGATTGGTTCACAAGTATGAGATCAACCTAATTACTT
TCTGGGAGGATTAGTTTCATTAGACTTTGTTCCGTTCTAGGGGGTTTAAACCTATAGGGGATCCCATCCCTGGAGGGATT
GGGTGAACCCCCTCCTGTCATTCAATCCCCACTAACCCTTCTCCCTCCATTCCCCTG---------CTACTAATATTCAT
TCGGTTAAACCTTCAGCCCATTGAACAAACAATACTATTGTGCTGCTTTGTCATATAAAGAACATCGTTGTAAAACTTAC
TATTGTGCTGCTCTGTTGTACAAGGAACATCATAGAAAACTTACTACGACGGAAACTTTGGCCCTCAGATTCGGTCTTGC
CCTTGCGCAAAGGATGGGATGCAACGAACTCGTTATTAATTATGACAATCTTGAGGTCATTGACACTATGAAGACGGGTG
GTCATTCCTCGGGGGCGGCGGCG---GTTTTCGACGACTGTTATCATTCTATTCGCGATTTTACTATTTGTAGGTTTGAA
CATTATAATAGGGAAGCAAATAAAGTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTCCTTTGACGTATGATTTGCTTGA
GGAGCCTCCAATTGAACTTGTACCCTTTCTCATAAATGATATAACTATTATTTCAAATGAATAAAGTTGTGTGTATTATT
TTTCAAA-AAAGGAACATCAGATAAAA--ATGCTTTCAAGTACTGTTGTGTTGTTGTATTGCTGCAGAACTGAAAAGGAA
GATCAGAAAACTTACAAGTTCAGAACAATTGTTATATTATTGAATAGAAGAACACAACAGTACAAGGACCAG--CAGCAA
CAGTCGCCAAGCATTGTTCGCATGCCAATACTTAAAAACTTACAGGTTCCAACTTCCAACATATAACATCCATGTGCATC
AATGATATTACAGAATGATATGATTTAATACTAGATATCAAGTACTAATTAAGCCATAGGGTATTTCAGAATTCCAACGA
GCATCTCTCCGGTGGTGAACATCTCATCGAGGATGGCCACAACAATCATAGCCAGTTGCAAAATATAGCACGGATGAGCC
TTCGCCTCAGATGGCATGCACTAGTCGACGAGGGTGACACACTCGCGAAAGTCTGACGCTTCTTGGTCCCACCAATGTCG
TGCCTCTGTCCCTGCCACCTTCATTGTGGCCGCTGTCGCCTAGGGTTCGCGAGAGGAGAATGGGAGAGAGGCACAACTCA
T-TTTTTCGGTGCAAGGGCAATGGTTGATTCCACGCGGGGAGAGGCGGGGATTGATTCCCCAGTGAAACCCGACGCTTTT
GAAAGGGATCGGTCGGGGTGTGAACCCCTGTGGGTTTAACCAAGAAAAAAGTCCATTTTACTCCCTTGAAGAAAATGGGT
TGTTCGCATAACCCCTTGAACTTTTTTTTTTGTTCACTTAACCCCCTGATCTATCCAATACCGTTCAGAAATAATCTTGG
GCGGATTTTCTCGGGTGGTTTGCTGACGTGGACATTGTCAAAGTGGTTTGTTGACCAAAGGGGCCTTGTGGTCAGGTGAA
GAGCGCAGCCGGCGCTCAGTTCATGCCGATGGTGTTGTCGTTCTTCGTCCGCGCGGCTAGCGCCTCGTCCTCATGTTGAA
ATCTTGTCCAAGAGATTCACCTCGCTCAGC
>chr5D_1
GAATACGATTACTCCGGCATAGGCTACGTGAGCTCAAAGTAGGTTTACCAGACAAAAT-GATAAGTCTAACATTCCCAGC
TAACCAAGCAAAGCCGGTGGTTTCTTAGTCACGGCCAGCTAAAACAAAAGTTTCATTAAAGAGCG---------------
---TCCTCAAGGAATATAAAATTTTCATGGTGCTATTCCAGAGCTACCATCCATGCACGAATACCCTCGTTTAAAAGAAT
AATCCGTTGAACAAAGAAAAAGCACATTCATCTGTGGGTGCAAAACGGTTGTGAAACTATCAAAGAAAAATAAAAACACA
TCTGAGGATCCTTTATAGATGTTGATCTTTATCCAACTACCAGTCAATTCACCTAGAATCCTAGATAAAAGTTAAAATAG
TCAATTCACCTAGAATCCTAGATAAAAGTTAAAATAGTTAATCGAGATGGACCCACCTACATCAGACTAAATAAATATTG
GCATTCCTTTTAAAGTTGAGGTCTACCCCCTCTTGTCCATGGAAGGACATGTGAACTCACCACTTGGGTGAGTGATGTGT
GTGTTTGGTTAAGGCCGGGACGGGGAAAGTCCCGGCCCAATCTACCCTGTTCCATGGGGTGGGGTGGGGTGGGGGGGGGG
ACTCCTCTGAAGCCGTTGAACGAAACCCACTTCAAAGTTCAGGGGATTGATTCACAAGTATGAGATCAACCTAATTACTT
CCTGGGAGGATTAGTTTCACTAGGCTTTGTTCCATTCTAGGGGGTTTAAACCTATAGGGGATCCCATCCCTGGAGGGATT
GGGTGAACCCCCTCCCGTCATTCAAT-CCCACTAACCCTTCTCCCTCCATTCCCCTG---------CTACTAATATCCAT
TCGGTTAAACCTTCAGCCCATTGAACAAACAGTACTACTGTGCTGCTTTGTCATATAAAGAACATCGTCATAAAACTTAC
TATTGTGTTGCTCTATTGTACAAGGAACATCGTAGAAAACTTACTACGGCGGAAACTTTGGCTCTCAGATTCGGTCTTGC
CCTTGCGCAAAGGATGGGATGCAACCAACTCGTTATTAATTATGACAATCTTGAGGTCATTGACACTATGAAGACGGGTG
GTCATTCTTTGGGGGCGGCGGCT---GTTTTCGACGACTGTTATCATTCCATTTGCGATTTTACTATTTGTAGGTTTGAA
CATTGTAATAGGGAAGCAAATAAAGTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTTCTTTGACGTATGATTGGCTTGA
GGAGCCTCCAATTGAACTTGTACCCTTTCTCATAAATGATATAACTGTTATTTCAAATGAATAAAGTTGTGTGTATTATT
TTTCAAAAAAAGGAACATCAGAAAAAAATATGCTTTCAAGTACTGCTGTGTTGTTGTATTGCTGCAGAACTGAAAAGAAA
GATCAGAAAACTTACAAGTTCAGAACAATGGTTATATTATTGAATAGAAGAACACAACAATACAAGGACCAG--CAACAA
CAGTCGCCAAGCATTGTTCGCATGCCAGCACTTAAAAACTTACAGGTTCCAAC-------ATATAACATCCATGTGCATC
AATGAGATTACAGAATGATATGATTTAATATTAGATATCAAGTTCTAATAAAGCCATAGGGTAGTTCAGAATTCCAACGA
GCATCTCTCGGGTGGCGAACATCTCATCGAGGATGGCCACAACAGCCATGGCCAGTTGCAAAATATAGCACGGATGAGCC
TTCGCCTCAGATGGCATGCACTAGTCGACGAGGTTGACACGCTCGCGAAAGTCTGACGCTTCTTGGTCCCACCAATGTCG
TGCCTCTGTCCCTGCCACCTTCGTTGTGGCCACTGTCGCCTAGGGTTCGCGAGAGGAGAATGGGAGAGAGGAGCAACTCA
TTTTTTTCGGTGCAAGGGCAATGGTTGATTCCACGCGGGGAGAGGCAGGGATTGATTCCCCAATGAAACCCAGCGCTTTT
GGAAGGGACCGGCCGAGGTGTAACCCACGTTGGGTTTAACCAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr5B_1
GAATATGATTACTCTGGCATGGGCTACGTGAGCTCCAAGTAGGTTTGCCGTACAAATT-GATAAGTCTTACATTCCCAGC
TCACCAAGCAAAGCCGGTGGTTTCTTAGTAAGGACCGGCTAAAACAAAAGTTTCATTAAAGAGTGTTTCCACGTGGTAGA
ACCTCCTCAAGGAATATAAAATTTTCATGAGGTTGTTCTAGAGCTGCCATCCATGCACGAATAGCCTCGTTTAAAAGAAT
ACCTCGTTGAACGAAGAAAAGGCACATTCATCTGTGGGCGCAAAACGGTTGTGAAACTATCAAAGCAAAATGAAAACACA
ACTGGGGATCCTTTATAGATGTTGACTATTGTCTAACTACCAGTCAGTTCAC----------------------------
-----------------CTAGATAAAAGTTAAAATAGTGAATAGAGATGGACCCACGTACATCAGACTAAATAAATATTG
ACATTCCTTTTAAAGTTGAGGTCAACCCCCTCTTGTTCAAGGAAGCACATGTGAACTCACCACTTGGGTGAGTGATGTGT
GTGTTTGGTTGAGGCTGGGACGGGGAAAGTCCCAGCCCAATCCACCTTGTTCCATGGGGGAGAAAAAAA-----------
ACTCCTTTGAAGCCATTGAATGAAACCCACTCCAAAGTTGATGGGATTGGGTGACAAGTATGAGATCAACATAATTACTT
CTTTGGTGGATTAGTTTCACTAGGCTTTGTTCGTTTCTAGGGGGTTTAAACCTATAAGGAATCCCATCCCTGGAAGGATT
GGGGGAACCTCATCCCGTCATTCAATCCCCACTAACCCTCCTCCCTCCATTCCCCTGTGAACCCTGCTACTAACATCCAT
TCGGTTAAACCTTCAACCCACTGAACAAATAG---------------------------------------------TAC
TATTGTGCTGCTCTGTTGTATAAGGAACATCAGGGAAAACTTACTACAACGGAAACTTTGGCGCTCAGATTTAGTCTTGC
CCTTGCGCAAAGGGTGGGGTGCAACCCACTCGTTATTAGTTATGACAATTTCGAGGTCATTGACACTATGAAGACGGGTG
GTCATTCTTCGGGGGCGGCGGCGACGGTTTTCGACAATTGTGATCATTCCATTTACGATTTTACTATTTTTAGGTTTGAA
CATTACAATAGGAAAGCAAATAAATTTGCTCATGAGCTCGCTAGGTTGGCTAGATTTTCTTTGATGTATAATTGGCTTGA
GGAGCCTCTGATTGAACTTGTATGCTTTCTCATAAATGATGTAATTGTTATTTCAAATAAATAAAGTTGTGTTTATTTTT
T-------AAAGGAACATCAGAGAAAA--ACGCTTTCAAGTATTGTTGTGTTGTTGTATTGTTGTAGAACTGAAAAAGAA
TATCAGAAAACTTA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr5B_1392
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CTTACAAGTTCAAAACAATGGTTATA-TATTGAATAGAAGAACACAACAATACAAGGACCAACACAACAA
CGGTCGCCAAGTATTGTTCGCATGTCAATACTTAAAAACTTACAGGTTCCAAC-------ATATCACATCCATGTGCATC
AATGAGATTGCAGTGTGATATGATTTAATATTAGATATCAAGTTCTAATTAAACCATAGGGCAGTTCAGAATTCCAACGA
GCATCTCTAGGGTGGCGAACATCTCATCAAGGATGGCCACAACAGCCATGGTCAGTTGCAAAATATAGCATGGATGAGCC
TTCGCCTCAGATGGTATGCACTAGTCGACGAGGGTGAGACGCTCGTGGAAGTCTGACGCTTCTTGGACCCGCCAATGTCG
TGACTCCATCCCTGCCACCTTCGTTGTGGCTGTTGTCGCTTAGGGTTCGCGAGAGGAGAATGGGAGAGAGGAGCTGCTCT
TCTTTTCAGCGCAAAGGGCAATGGTTGATTCCACGTGAGGAGATGTGGGGATTGATTCCCCACTGAAACCCGACGCTTTT
GGAAGGGATCGGCCGGGGTGTAACCC-CGATGAGTTTTACCAGAGA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>SNPs
---------------------------------------------------------SS------------------S--
---------------S-----S-S-------------------------------S------------------S-----
--------------------------------------------------------------------------------
------S--------------S---------S------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------S-----------------------------------------------------
-------------------------------------S-------------S----------------------------
--------------------------------------------------------------------------------
S------------------S---S---------S----------------------------------------------
---------------S------------------------------------------------------------S---
-------------------------------S-----S------------------------------SS----------
--------------------------------------------------------------S-----------------
-------------------------S------------------------------------------------------
-------S-----------------------------------------S---S--------------------------
---------------------------------------------------------S---------------S------
----------------------------------------------S---------------------------------
----------------------S---------------------------------------------------------
-----------------------------S-----------------------------S----------------S---
-----------------------------------------------------SSSSSSS--------------------
-----S------------------------S------------S-------------------S----------------
---------S-----S----------------------------SS---S------------------------------
----------------------------------------S---------------------------------------
----------------------S------------------------------------------------SS-------
--------------------------------------------------------------S-----------------
-S----------S--------S-S--S-SS-------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_104
--------------------------------------------------------------------------------
----CAAGCAAAGCCAGTGGTCTG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCTTGG
GCGGATTTTCTCGG------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
