Multiple sequence alignment - TraesCS5A01G127800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G127800 chr5A 100.000 2747 0 0 1 2747 284706258 284709004 0.000000e+00 5073
1 TraesCS5A01G127800 chr5A 92.975 242 14 2 2505 2745 121929464 121929703 1.570000e-92 350
2 TraesCS5A01G127800 chr5A 90.179 224 21 1 2285 2508 599486201 599486423 9.620000e-75 291
3 TraesCS5A01G127800 chr5A 89.189 222 24 0 2289 2510 477455455 477455234 7.490000e-71 278
4 TraesCS5A01G127800 chr5B 93.709 1844 58 22 456 2286 231736503 231738301 0.000000e+00 2710
5 TraesCS5A01G127800 chr5B 90.943 265 5 3 194 439 231736253 231736517 3.390000e-89 339
6 TraesCS5A01G127800 chr5D 93.590 1841 73 22 456 2289 215880057 215881859 0.000000e+00 2704
7 TraesCS5A01G127800 chr5D 95.257 253 6 3 193 439 215879819 215880071 1.980000e-106 396
8 TraesCS5A01G127800 chr5D 90.233 215 20 1 2289 2503 535499714 535499927 2.080000e-71 279
9 TraesCS5A01G127800 chr3A 94.239 243 10 2 2507 2747 40331053 40330813 4.320000e-98 368
10 TraesCS5A01G127800 chr3A 93.061 245 13 2 2505 2747 600743372 600743130 3.360000e-94 355
11 TraesCS5A01G127800 chr3A 92.653 245 14 3 2504 2747 123292572 123292813 1.570000e-92 350
12 TraesCS5A01G127800 chr3A 96.891 193 6 0 1 193 33611831 33612023 9.490000e-85 324
13 TraesCS5A01G127800 chr3A 90.455 220 21 0 2289 2508 703773263 703773044 9.620000e-75 291
14 TraesCS5A01G127800 chr3A 80.978 184 31 2 18 197 442290751 442290934 2.850000e-30 143
15 TraesCS5A01G127800 chr7A 94.262 244 7 5 2507 2747 705563527 705563288 1.550000e-97 366
16 TraesCS5A01G127800 chr7A 93.827 243 11 3 2505 2747 91802253 91802015 2.010000e-96 363
17 TraesCS5A01G127800 chr7A 97.927 193 4 0 1 193 12878468 12878276 4.380000e-88 335
18 TraesCS5A01G127800 chr7A 89.640 222 23 0 2287 2508 89365661 89365440 1.610000e-72 283
19 TraesCS5A01G127800 chr4A 93.443 244 12 3 2507 2747 34673798 34673556 2.600000e-95 359
20 TraesCS5A01G127800 chr4A 97.449 196 4 1 1 196 30409103 30409297 1.580000e-87 333
21 TraesCS5A01G127800 chr1A 93.469 245 10 5 2507 2747 302941420 302941178 2.600000e-95 359
22 TraesCS5A01G127800 chr1A 96.891 193 6 0 1 193 395489573 395489765 9.490000e-85 324
23 TraesCS5A01G127800 chrUn 93.033 244 12 5 2505 2747 11804716 11804955 4.350000e-93 351
24 TraesCS5A01G127800 chr7B 97.927 193 4 0 1 193 684145756 684145948 4.380000e-88 335
25 TraesCS5A01G127800 chr7B 89.041 219 24 0 2289 2507 723927548 723927330 3.490000e-69 272
26 TraesCS5A01G127800 chr6B 96.875 192 6 0 1 192 63224160 63224351 3.410000e-84 322
27 TraesCS5A01G127800 chr6B 96.875 192 6 0 1 192 63255164 63255355 3.410000e-84 322
28 TraesCS5A01G127800 chr2A 95.361 194 7 1 1 192 678165422 678165229 9.560000e-80 307
29 TraesCS5A01G127800 chr2A 89.545 220 23 0 2289 2508 3764886 3764667 2.080000e-71 279
30 TraesCS5A01G127800 chr4B 75.584 770 93 60 1006 1726 136532482 136533205 2.680000e-75 292
31 TraesCS5A01G127800 chr2B 89.091 220 24 0 2289 2508 107096782 107096563 9.690000e-70 274
32 TraesCS5A01G127800 chr3B 89.091 220 23 1 2289 2508 564340896 564341114 3.490000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G127800 chr5A 284706258 284709004 2746 False 5073.0 5073 100.0000 1 2747 1 chr5A.!!$F2 2746
1 TraesCS5A01G127800 chr5B 231736253 231738301 2048 False 1524.5 2710 92.3260 194 2286 2 chr5B.!!$F1 2092
2 TraesCS5A01G127800 chr5D 215879819 215881859 2040 False 1550.0 2704 94.4235 193 2289 2 chr5D.!!$F2 2096
3 TraesCS5A01G127800 chr4B 136532482 136533205 723 False 292.0 292 75.5840 1006 1726 1 chr4B.!!$F1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.179018 CCGGGCCCCTAAAATCTCAG 60.179 60.0 18.66 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2252 0.943835 TCGTGACCGTGTGAGCAATG 60.944 55.0 0.0 0.0 35.01 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.571810 TGCACATGAAGTAATTGAACATTATTC 57.428 29.630 0.00 0.00 0.00 1.75
27 28 9.793252 GCACATGAAGTAATTGAACATTATTCT 57.207 29.630 0.00 0.00 0.00 2.40
63 64 9.818270 AATGATAATCATCCCTACATGATTTGT 57.182 29.630 12.62 4.43 46.87 2.83
64 65 9.818270 ATGATAATCATCCCTACATGATTTGTT 57.182 29.630 12.62 1.47 46.87 2.83
69 70 9.784531 AATCATCCCTACATGATTTGTTAGTAG 57.215 33.333 0.00 0.00 46.87 2.57
70 71 8.319057 TCATCCCTACATGATTTGTTAGTAGT 57.681 34.615 0.00 0.00 39.87 2.73
71 72 9.429109 TCATCCCTACATGATTTGTTAGTAGTA 57.571 33.333 0.00 0.00 39.87 1.82
74 75 8.647796 TCCCTACATGATTTGTTAGTAGTATGG 58.352 37.037 0.00 0.00 39.87 2.74
75 76 8.429641 CCCTACATGATTTGTTAGTAGTATGGT 58.570 37.037 0.00 0.00 39.87 3.55
76 77 9.261180 CCTACATGATTTGTTAGTAGTATGGTG 57.739 37.037 0.00 0.00 39.87 4.17
77 78 9.817809 CTACATGATTTGTTAGTAGTATGGTGT 57.182 33.333 0.00 0.00 39.87 4.16
79 80 9.817809 ACATGATTTGTTAGTAGTATGGTGTAG 57.182 33.333 0.00 0.00 33.74 2.74
83 84 8.943909 ATTTGTTAGTAGTATGGTGTAGAAGC 57.056 34.615 0.00 0.00 0.00 3.86
84 85 7.470935 TTGTTAGTAGTATGGTGTAGAAGCA 57.529 36.000 0.00 0.00 41.41 3.91
85 86 7.470935 TGTTAGTAGTATGGTGTAGAAGCAA 57.529 36.000 0.00 0.00 40.33 3.91
86 87 7.898918 TGTTAGTAGTATGGTGTAGAAGCAAA 58.101 34.615 0.00 0.00 40.33 3.68
87 88 8.369424 TGTTAGTAGTATGGTGTAGAAGCAAAA 58.631 33.333 0.00 0.00 40.33 2.44
88 89 9.379791 GTTAGTAGTATGGTGTAGAAGCAAAAT 57.620 33.333 0.00 0.00 40.33 1.82
89 90 9.595823 TTAGTAGTATGGTGTAGAAGCAAAATC 57.404 33.333 0.00 0.00 40.33 2.17
90 91 7.852263 AGTAGTATGGTGTAGAAGCAAAATCT 58.148 34.615 0.00 0.00 40.33 2.40
91 92 8.322091 AGTAGTATGGTGTAGAAGCAAAATCTT 58.678 33.333 0.00 0.00 40.33 2.40
92 93 9.595823 GTAGTATGGTGTAGAAGCAAAATCTTA 57.404 33.333 0.00 0.00 40.33 2.10
94 95 9.515226 AGTATGGTGTAGAAGCAAAATCTTAAA 57.485 29.630 0.00 0.00 40.33 1.52
95 96 9.774742 GTATGGTGTAGAAGCAAAATCTTAAAG 57.225 33.333 0.00 0.00 40.33 1.85
96 97 7.817418 TGGTGTAGAAGCAAAATCTTAAAGT 57.183 32.000 0.00 0.00 32.00 2.66
97 98 8.232913 TGGTGTAGAAGCAAAATCTTAAAGTT 57.767 30.769 0.00 0.00 32.00 2.66
98 99 8.134895 TGGTGTAGAAGCAAAATCTTAAAGTTG 58.865 33.333 0.00 0.00 32.00 3.16
99 100 7.114953 GGTGTAGAAGCAAAATCTTAAAGTTGC 59.885 37.037 0.00 0.00 45.29 4.17
100 101 7.647715 GTGTAGAAGCAAAATCTTAAAGTTGCA 59.352 33.333 9.62 0.00 46.92 4.08
101 102 7.647715 TGTAGAAGCAAAATCTTAAAGTTGCAC 59.352 33.333 9.62 3.85 46.92 4.57
102 103 6.572519 AGAAGCAAAATCTTAAAGTTGCACA 58.427 32.000 9.62 0.00 46.92 4.57
103 104 7.041107 AGAAGCAAAATCTTAAAGTTGCACAA 58.959 30.769 9.62 0.00 46.92 3.33
104 105 7.548780 AGAAGCAAAATCTTAAAGTTGCACAAA 59.451 29.630 9.62 0.00 46.92 2.83
105 106 7.237920 AGCAAAATCTTAAAGTTGCACAAAG 57.762 32.000 9.62 0.00 46.92 2.77
106 107 6.818142 AGCAAAATCTTAAAGTTGCACAAAGT 59.182 30.769 9.62 0.00 46.92 2.66
107 108 7.978975 AGCAAAATCTTAAAGTTGCACAAAGTA 59.021 29.630 9.62 0.00 46.92 2.24
108 109 8.764287 GCAAAATCTTAAAGTTGCACAAAGTAT 58.236 29.630 2.53 0.00 44.53 2.12
114 115 8.875803 TCTTAAAGTTGCACAAAGTATATACCG 58.124 33.333 9.32 1.57 0.00 4.02
115 116 8.774890 TTAAAGTTGCACAAAGTATATACCGA 57.225 30.769 9.32 0.00 0.00 4.69
116 117 7.675962 AAAGTTGCACAAAGTATATACCGAA 57.324 32.000 9.32 0.00 0.00 4.30
117 118 7.675962 AAGTTGCACAAAGTATATACCGAAA 57.324 32.000 9.32 0.00 0.00 3.46
118 119 7.675962 AGTTGCACAAAGTATATACCGAAAA 57.324 32.000 9.32 0.00 0.00 2.29
119 120 8.276252 AGTTGCACAAAGTATATACCGAAAAT 57.724 30.769 9.32 0.00 0.00 1.82
120 121 9.386010 AGTTGCACAAAGTATATACCGAAAATA 57.614 29.630 9.32 0.00 0.00 1.40
121 122 9.991388 GTTGCACAAAGTATATACCGAAAATAA 57.009 29.630 9.32 0.00 0.00 1.40
142 143 8.615878 AATAATTTTTGAAAGTACAAAGGGCC 57.384 30.769 0.00 0.00 40.15 5.80
143 144 4.409718 TTTTTGAAAGTACAAAGGGCCC 57.590 40.909 16.46 16.46 40.15 5.80
144 145 2.003937 TTGAAAGTACAAAGGGCCCC 57.996 50.000 21.43 0.54 0.00 5.80
145 146 0.250989 TGAAAGTACAAAGGGCCCCG 60.251 55.000 21.43 10.47 0.00 5.73
146 147 0.963856 GAAAGTACAAAGGGCCCCGG 60.964 60.000 21.43 11.21 0.00 5.73
147 148 1.428718 AAAGTACAAAGGGCCCCGGA 61.429 55.000 21.43 0.00 0.00 5.14
148 149 1.212250 AAGTACAAAGGGCCCCGGAT 61.212 55.000 21.43 4.54 0.00 4.18
149 150 1.212250 AGTACAAAGGGCCCCGGATT 61.212 55.000 21.43 2.26 0.00 3.01
150 151 0.750546 GTACAAAGGGCCCCGGATTC 60.751 60.000 21.43 1.45 0.00 2.52
151 152 0.917333 TACAAAGGGCCCCGGATTCT 60.917 55.000 21.43 0.00 0.00 2.40
152 153 1.754234 CAAAGGGCCCCGGATTCTG 60.754 63.158 21.43 1.20 0.00 3.02
153 154 2.996330 AAAGGGCCCCGGATTCTGG 61.996 63.158 21.43 4.37 0.00 3.86
154 155 4.760220 AGGGCCCCGGATTCTGGT 62.760 66.667 21.43 0.00 0.00 4.00
155 156 3.739613 GGGCCCCGGATTCTGGTT 61.740 66.667 12.23 0.00 0.00 3.67
156 157 2.359011 GGCCCCGGATTCTGGTTT 59.641 61.111 0.73 0.00 0.00 3.27
157 158 1.753078 GGCCCCGGATTCTGGTTTC 60.753 63.158 0.73 0.00 0.00 2.78
158 159 1.001393 GCCCCGGATTCTGGTTTCA 60.001 57.895 0.73 0.00 0.00 2.69
159 160 1.313091 GCCCCGGATTCTGGTTTCAC 61.313 60.000 0.73 0.00 0.00 3.18
160 161 0.679960 CCCCGGATTCTGGTTTCACC 60.680 60.000 0.73 0.00 39.22 4.02
161 162 0.679960 CCCGGATTCTGGTTTCACCC 60.680 60.000 0.73 0.00 37.50 4.61
162 163 0.679960 CCGGATTCTGGTTTCACCCC 60.680 60.000 0.00 0.00 37.50 4.95
163 164 1.024579 CGGATTCTGGTTTCACCCCG 61.025 60.000 0.00 0.00 37.50 5.73
164 165 0.679960 GGATTCTGGTTTCACCCCGG 60.680 60.000 0.00 0.00 37.50 5.73
165 166 0.679960 GATTCTGGTTTCACCCCGGG 60.680 60.000 15.80 15.80 37.50 5.73
166 167 2.781431 ATTCTGGTTTCACCCCGGGC 62.781 60.000 17.73 0.00 37.50 6.13
171 172 4.679003 TTTCACCCCGGGCCCCTA 62.679 66.667 17.73 0.00 0.00 3.53
172 173 4.679003 TTCACCCCGGGCCCCTAA 62.679 66.667 17.73 0.94 0.00 2.69
173 174 4.679003 TCACCCCGGGCCCCTAAA 62.679 66.667 17.73 0.00 0.00 1.85
174 175 3.663806 CACCCCGGGCCCCTAAAA 61.664 66.667 17.73 0.00 0.00 1.52
175 176 2.619159 ACCCCGGGCCCCTAAAAT 60.619 61.111 17.73 0.00 0.00 1.82
176 177 2.197599 CCCCGGGCCCCTAAAATC 59.802 66.667 17.73 0.00 0.00 2.17
177 178 2.391972 CCCCGGGCCCCTAAAATCT 61.392 63.158 17.73 0.00 0.00 2.40
178 179 1.150764 CCCGGGCCCCTAAAATCTC 59.849 63.158 18.66 0.00 0.00 2.75
179 180 1.641552 CCCGGGCCCCTAAAATCTCA 61.642 60.000 18.66 0.00 0.00 3.27
180 181 0.179018 CCGGGCCCCTAAAATCTCAG 60.179 60.000 18.66 0.00 0.00 3.35
181 182 0.179018 CGGGCCCCTAAAATCTCAGG 60.179 60.000 18.66 0.00 0.00 3.86
182 183 1.222567 GGGCCCCTAAAATCTCAGGA 58.777 55.000 12.23 0.00 33.42 3.86
183 184 1.133761 GGGCCCCTAAAATCTCAGGAC 60.134 57.143 12.23 0.00 33.42 3.85
184 185 1.133761 GGCCCCTAAAATCTCAGGACC 60.134 57.143 0.00 0.00 33.42 4.46
185 186 1.475213 GCCCCTAAAATCTCAGGACCG 60.475 57.143 0.00 0.00 33.42 4.79
186 187 1.141053 CCCCTAAAATCTCAGGACCGG 59.859 57.143 0.00 0.00 33.42 5.28
187 188 1.475213 CCCTAAAATCTCAGGACCGGC 60.475 57.143 0.00 0.00 33.42 6.13
188 189 1.475213 CCTAAAATCTCAGGACCGGCC 60.475 57.143 0.00 3.58 33.42 6.13
189 190 0.544697 TAAAATCTCAGGACCGGCCC 59.455 55.000 0.00 0.00 37.37 5.80
190 191 1.208165 AAAATCTCAGGACCGGCCCT 61.208 55.000 2.07 2.07 37.37 5.19
260 265 3.306818 GTCGTAACTATCAGAATCGGGC 58.693 50.000 0.00 0.00 0.00 6.13
377 401 2.436417 TCCCTGGCTGAAAATTTCTCG 58.564 47.619 7.29 0.00 0.00 4.04
433 457 3.631453 CAGCTGGTGCCAAGTTAGA 57.369 52.632 5.57 0.00 40.80 2.10
434 458 1.446907 CAGCTGGTGCCAAGTTAGAG 58.553 55.000 5.57 0.00 40.80 2.43
435 459 1.002430 CAGCTGGTGCCAAGTTAGAGA 59.998 52.381 5.57 0.00 40.80 3.10
436 460 1.912043 AGCTGGTGCCAAGTTAGAGAT 59.088 47.619 0.00 0.00 40.80 2.75
437 461 2.307098 AGCTGGTGCCAAGTTAGAGATT 59.693 45.455 0.00 0.00 40.80 2.40
438 462 3.084786 GCTGGTGCCAAGTTAGAGATTT 58.915 45.455 0.00 0.00 0.00 2.17
439 463 3.507622 GCTGGTGCCAAGTTAGAGATTTT 59.492 43.478 0.00 0.00 0.00 1.82
440 464 4.021981 GCTGGTGCCAAGTTAGAGATTTTT 60.022 41.667 0.00 0.00 0.00 1.94
544 568 2.100991 GCAGCATTACAGCACCGC 59.899 61.111 0.00 0.00 36.85 5.68
685 709 2.743664 GCAAAATGACAAGAAATGCCCC 59.256 45.455 0.00 0.00 0.00 5.80
732 756 4.159557 TCTGACTATATATGTGCTGGCCA 58.840 43.478 4.71 4.71 0.00 5.36
763 787 2.968574 AGTGAGAAGAGCACAGGAAGAA 59.031 45.455 0.00 0.00 38.70 2.52
764 788 3.006752 AGTGAGAAGAGCACAGGAAGAAG 59.993 47.826 0.00 0.00 38.70 2.85
765 789 3.006323 GTGAGAAGAGCACAGGAAGAAGA 59.994 47.826 0.00 0.00 36.31 2.87
766 790 3.643320 TGAGAAGAGCACAGGAAGAAGAA 59.357 43.478 0.00 0.00 0.00 2.52
861 885 3.058450 CGAAGTGATCATCTCTCCATGC 58.942 50.000 0.00 0.00 0.00 4.06
962 993 3.609409 GCGATTTCGTTTTCCTCTTTGCT 60.609 43.478 1.55 0.00 42.22 3.91
967 998 1.758783 GTTTTCCTCTTTGCTGTGCG 58.241 50.000 0.00 0.00 0.00 5.34
1107 1150 4.410400 GTCCACCCCAAGAGGCCG 62.410 72.222 0.00 0.00 0.00 6.13
1134 1177 1.954382 CCGACATCCTTCACCGAGATA 59.046 52.381 0.00 0.00 0.00 1.98
1798 1892 0.890996 GACTGGAAACACTGGCTGGG 60.891 60.000 0.00 0.00 35.60 4.45
1819 1913 2.031682 GTCATGCAAGAACACAGGACAC 60.032 50.000 0.00 0.00 44.64 3.67
1820 1914 1.948834 CATGCAAGAACACAGGACACA 59.051 47.619 0.00 0.00 0.00 3.72
1863 1957 3.074504 ACGACGCACATATTGTATCGT 57.925 42.857 0.00 6.77 39.94 3.73
1864 1958 4.213596 ACGACGCACATATTGTATCGTA 57.786 40.909 10.28 0.00 39.33 3.43
1919 2015 9.121658 TGAGAGTACTACTATCAACGAATTCAT 57.878 33.333 10.51 0.00 42.73 2.57
1938 2034 9.537192 GAATTCATAATCTTTTTGGCATCATGA 57.463 29.630 0.00 0.00 0.00 3.07
2010 2108 2.726241 GACGCACAAAGGAATGCTTTTC 59.274 45.455 0.00 0.00 39.79 2.29
2015 2113 5.562696 CGCACAAAGGAATGCTTTTCTCTAA 60.563 40.000 0.00 0.00 39.79 2.10
2039 2137 1.839424 AAGGGGATGCTTTCCTTTCG 58.161 50.000 6.28 0.00 44.75 3.46
2045 2143 1.599542 GATGCTTTCCTTTCGGGATCG 59.400 52.381 0.00 0.00 44.66 3.69
2095 2193 9.774413 TTTTCTTAGGTCTTCCTTAGTTTGTAG 57.226 33.333 0.00 0.00 42.12 2.74
2096 2194 8.716674 TTCTTAGGTCTTCCTTAGTTTGTAGA 57.283 34.615 0.00 0.00 42.12 2.59
2097 2195 8.350852 TCTTAGGTCTTCCTTAGTTTGTAGAG 57.649 38.462 0.00 0.00 42.12 2.43
2100 2198 7.465353 AGGTCTTCCTTAGTTTGTAGAGTAC 57.535 40.000 0.00 0.00 42.12 2.73
2153 2252 1.605232 CGCATACGGTTAAAATCCCCC 59.395 52.381 0.00 0.00 34.97 5.40
2175 2274 1.590525 GCTCACACGGTCACGAACA 60.591 57.895 0.00 0.00 44.60 3.18
2176 2275 0.944311 GCTCACACGGTCACGAACAT 60.944 55.000 0.00 0.00 44.60 2.71
2177 2276 1.060713 CTCACACGGTCACGAACATC 58.939 55.000 0.00 0.00 44.60 3.06
2178 2277 0.662077 TCACACGGTCACGAACATCG 60.662 55.000 0.00 0.00 46.93 3.84
2179 2278 2.019951 ACACGGTCACGAACATCGC 61.020 57.895 0.00 0.00 45.12 4.58
2180 2279 2.803670 ACGGTCACGAACATCGCG 60.804 61.111 0.00 0.00 45.12 5.87
2220 2321 2.610976 GGGTACATCACACACGCTACAA 60.611 50.000 0.00 0.00 0.00 2.41
2247 2348 5.353394 AATAAGTGCGATAAGGTTCCAGA 57.647 39.130 0.00 0.00 0.00 3.86
2250 2351 5.353394 AAGTGCGATAAGGTTCCAGAATA 57.647 39.130 0.00 0.00 0.00 1.75
2255 2357 4.745620 GCGATAAGGTTCCAGAATACAGAC 59.254 45.833 0.00 0.00 0.00 3.51
2294 2396 4.395625 TCGTATACGATGATTGAGAGGGT 58.604 43.478 23.54 0.00 44.22 4.34
2295 2397 4.215613 TCGTATACGATGATTGAGAGGGTG 59.784 45.833 23.54 0.00 44.22 4.61
2296 2398 4.023107 CGTATACGATGATTGAGAGGGTGT 60.023 45.833 20.58 0.00 43.02 4.16
2297 2399 5.507482 CGTATACGATGATTGAGAGGGTGTT 60.507 44.000 20.58 0.00 43.02 3.32
2298 2400 3.703001 ACGATGATTGAGAGGGTGTTT 57.297 42.857 0.00 0.00 0.00 2.83
2299 2401 4.819105 ACGATGATTGAGAGGGTGTTTA 57.181 40.909 0.00 0.00 0.00 2.01
2300 2402 5.359194 ACGATGATTGAGAGGGTGTTTAT 57.641 39.130 0.00 0.00 0.00 1.40
2301 2403 5.745227 ACGATGATTGAGAGGGTGTTTATT 58.255 37.500 0.00 0.00 0.00 1.40
2302 2404 6.180472 ACGATGATTGAGAGGGTGTTTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2303 2405 6.659242 ACGATGATTGAGAGGGTGTTTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
2304 2406 7.148239 ACGATGATTGAGAGGGTGTTTATTTTC 60.148 37.037 0.00 0.00 0.00 2.29
2305 2407 7.148255 CGATGATTGAGAGGGTGTTTATTTTCA 60.148 37.037 0.00 0.00 0.00 2.69
2306 2408 8.599624 ATGATTGAGAGGGTGTTTATTTTCAT 57.400 30.769 0.00 0.00 0.00 2.57
2307 2409 7.829725 TGATTGAGAGGGTGTTTATTTTCATG 58.170 34.615 0.00 0.00 0.00 3.07
2308 2410 6.588719 TTGAGAGGGTGTTTATTTTCATGG 57.411 37.500 0.00 0.00 0.00 3.66
2309 2411 5.886609 TGAGAGGGTGTTTATTTTCATGGA 58.113 37.500 0.00 0.00 0.00 3.41
2310 2412 6.493166 TGAGAGGGTGTTTATTTTCATGGAT 58.507 36.000 0.00 0.00 0.00 3.41
2311 2413 6.953520 TGAGAGGGTGTTTATTTTCATGGATT 59.046 34.615 0.00 0.00 0.00 3.01
2312 2414 7.454380 TGAGAGGGTGTTTATTTTCATGGATTT 59.546 33.333 0.00 0.00 0.00 2.17
2313 2415 8.893563 AGAGGGTGTTTATTTTCATGGATTTA 57.106 30.769 0.00 0.00 0.00 1.40
2314 2416 9.492730 AGAGGGTGTTTATTTTCATGGATTTAT 57.507 29.630 0.00 0.00 0.00 1.40
2316 2418 9.889128 AGGGTGTTTATTTTCATGGATTTATTG 57.111 29.630 0.00 0.00 0.00 1.90
2317 2419 9.108284 GGGTGTTTATTTTCATGGATTTATTGG 57.892 33.333 0.00 0.00 0.00 3.16
2318 2420 9.665719 GGTGTTTATTTTCATGGATTTATTGGT 57.334 29.630 0.00 0.00 0.00 3.67
2325 2427 8.671987 TTTTCATGGATTTATTGGTTTAGGGA 57.328 30.769 0.00 0.00 0.00 4.20
2326 2428 7.654022 TTCATGGATTTATTGGTTTAGGGAC 57.346 36.000 0.00 0.00 0.00 4.46
2327 2429 6.980577 TCATGGATTTATTGGTTTAGGGACT 58.019 36.000 0.00 0.00 46.37 3.85
2328 2430 7.418378 TCATGGATTTATTGGTTTAGGGACTT 58.582 34.615 0.00 0.00 41.75 3.01
2329 2431 8.561769 TCATGGATTTATTGGTTTAGGGACTTA 58.438 33.333 0.00 0.00 41.75 2.24
2330 2432 9.196139 CATGGATTTATTGGTTTAGGGACTTAA 57.804 33.333 0.00 0.00 41.75 1.85
2331 2433 9.777008 ATGGATTTATTGGTTTAGGGACTTAAA 57.223 29.630 0.00 0.00 41.75 1.52
2332 2434 9.603189 TGGATTTATTGGTTTAGGGACTTAAAA 57.397 29.630 0.00 0.00 41.75 1.52
2366 2468 8.893563 ATAAATTCCATCTAAACCAAACAGGA 57.106 30.769 0.00 0.00 41.22 3.86
2367 2469 6.840780 AATTCCATCTAAACCAAACAGGAG 57.159 37.500 0.00 0.00 41.22 3.69
2368 2470 4.301072 TCCATCTAAACCAAACAGGAGG 57.699 45.455 0.00 0.00 41.22 4.30
2369 2471 3.010138 TCCATCTAAACCAAACAGGAGGG 59.990 47.826 0.00 0.00 41.22 4.30
2370 2472 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
2371 2473 4.325344 CCATCTAAACCAAACAGGAGGGAT 60.325 45.833 0.00 0.00 41.22 3.85
2372 2474 5.264395 CATCTAAACCAAACAGGAGGGATT 58.736 41.667 0.00 0.00 41.22 3.01
2373 2475 5.333566 TCTAAACCAAACAGGAGGGATTT 57.666 39.130 0.00 0.00 41.22 2.17
2374 2476 6.457159 TCTAAACCAAACAGGAGGGATTTA 57.543 37.500 0.00 0.00 41.22 1.40
2375 2477 7.039722 TCTAAACCAAACAGGAGGGATTTAT 57.960 36.000 0.00 0.00 41.22 1.40
2376 2478 8.165267 TCTAAACCAAACAGGAGGGATTTATA 57.835 34.615 0.00 0.00 41.22 0.98
2377 2479 8.272173 TCTAAACCAAACAGGAGGGATTTATAG 58.728 37.037 0.00 0.00 41.22 1.31
2378 2480 5.388599 ACCAAACAGGAGGGATTTATAGG 57.611 43.478 0.00 0.00 41.22 2.57
2379 2481 4.168088 ACCAAACAGGAGGGATTTATAGGG 59.832 45.833 0.00 0.00 41.22 3.53
2380 2482 4.415512 CCAAACAGGAGGGATTTATAGGGA 59.584 45.833 0.00 0.00 41.22 4.20
2381 2483 5.377478 CAAACAGGAGGGATTTATAGGGAC 58.623 45.833 0.00 0.00 0.00 4.46
2382 2484 4.578149 ACAGGAGGGATTTATAGGGACT 57.422 45.455 0.00 0.00 46.37 3.85
2383 2485 4.909284 ACAGGAGGGATTTATAGGGACTT 58.091 43.478 0.00 0.00 41.75 3.01
2384 2486 6.051946 ACAGGAGGGATTTATAGGGACTTA 57.948 41.667 0.00 0.00 41.75 2.24
2385 2487 6.458784 ACAGGAGGGATTTATAGGGACTTAA 58.541 40.000 0.00 0.00 41.75 1.85
2386 2488 6.912561 ACAGGAGGGATTTATAGGGACTTAAA 59.087 38.462 0.00 0.00 41.75 1.52
2387 2489 7.072581 ACAGGAGGGATTTATAGGGACTTAAAG 59.927 40.741 0.00 0.00 41.75 1.85
2388 2490 7.072581 CAGGAGGGATTTATAGGGACTTAAAGT 59.927 40.741 0.00 0.00 41.75 2.66
2389 2491 7.072581 AGGAGGGATTTATAGGGACTTAAAGTG 59.927 40.741 0.00 0.00 41.75 3.16
2390 2492 7.147355 GGAGGGATTTATAGGGACTTAAAGTGT 60.147 40.741 0.00 0.00 41.75 3.55
2391 2493 7.574607 AGGGATTTATAGGGACTTAAAGTGTG 58.425 38.462 0.00 0.00 41.75 3.82
2392 2494 6.262496 GGGATTTATAGGGACTTAAAGTGTGC 59.738 42.308 0.00 0.00 41.75 4.57
2393 2495 6.826741 GGATTTATAGGGACTTAAAGTGTGCA 59.173 38.462 0.00 0.00 41.75 4.57
2394 2496 7.502561 GGATTTATAGGGACTTAAAGTGTGCAT 59.497 37.037 0.00 0.00 41.75 3.96
2395 2497 8.823220 ATTTATAGGGACTTAAAGTGTGCATT 57.177 30.769 0.00 0.00 41.75 3.56
2396 2498 8.644374 TTTATAGGGACTTAAAGTGTGCATTT 57.356 30.769 0.00 0.00 41.75 2.32
2397 2499 4.853924 AGGGACTTAAAGTGTGCATTTG 57.146 40.909 0.00 0.00 27.25 2.32
2398 2500 3.573967 AGGGACTTAAAGTGTGCATTTGG 59.426 43.478 0.00 0.00 27.25 3.28
2399 2501 3.306019 GGGACTTAAAGTGTGCATTTGGG 60.306 47.826 0.00 0.00 0.00 4.12
2400 2502 3.572255 GGACTTAAAGTGTGCATTTGGGA 59.428 43.478 0.00 0.00 0.00 4.37
2401 2503 4.546570 GACTTAAAGTGTGCATTTGGGAC 58.453 43.478 0.00 0.00 38.51 4.46
2402 2504 4.215109 ACTTAAAGTGTGCATTTGGGACT 58.785 39.130 0.00 0.00 38.87 3.85
2403 2505 4.649218 ACTTAAAGTGTGCATTTGGGACTT 59.351 37.500 0.00 0.00 38.87 3.01
2404 2506 5.830991 ACTTAAAGTGTGCATTTGGGACTTA 59.169 36.000 0.00 0.00 38.87 2.24
2405 2507 6.493458 ACTTAAAGTGTGCATTTGGGACTTAT 59.507 34.615 0.00 0.00 38.87 1.73
2406 2508 7.668052 ACTTAAAGTGTGCATTTGGGACTTATA 59.332 33.333 0.00 0.00 38.87 0.98
2407 2509 6.909550 AAAGTGTGCATTTGGGACTTATAA 57.090 33.333 0.00 0.00 38.87 0.98
2408 2510 6.909550 AAGTGTGCATTTGGGACTTATAAA 57.090 33.333 0.00 0.00 38.87 1.40
2409 2511 6.909550 AGTGTGCATTTGGGACTTATAAAA 57.090 33.333 0.00 0.00 38.87 1.52
2410 2512 7.480760 AGTGTGCATTTGGGACTTATAAAAT 57.519 32.000 0.00 0.00 38.87 1.82
2411 2513 8.588290 AGTGTGCATTTGGGACTTATAAAATA 57.412 30.769 0.00 0.00 38.87 1.40
2412 2514 9.030452 AGTGTGCATTTGGGACTTATAAAATAA 57.970 29.630 0.00 0.00 38.87 1.40
2413 2515 9.301153 GTGTGCATTTGGGACTTATAAAATAAG 57.699 33.333 5.35 5.35 38.87 1.73
2414 2516 9.249053 TGTGCATTTGGGACTTATAAAATAAGA 57.751 29.630 12.43 0.00 38.87 2.10
2415 2517 9.516314 GTGCATTTGGGACTTATAAAATAAGAC 57.484 33.333 12.43 7.03 34.56 3.01
2416 2518 9.474313 TGCATTTGGGACTTATAAAATAAGACT 57.526 29.630 12.43 0.00 0.00 3.24
2417 2519 9.952188 GCATTTGGGACTTATAAAATAAGACTC 57.048 33.333 12.43 7.61 0.00 3.36
2449 2551 9.939424 AAGAGACTTATAGGGACTTATAACTGT 57.061 33.333 0.00 0.00 41.75 3.55
2453 2555 9.890352 GACTTATAGGGACTTATAACTGTAACG 57.110 37.037 0.00 0.00 41.75 3.18
2454 2556 9.413734 ACTTATAGGGACTTATAACTGTAACGT 57.586 33.333 0.00 0.00 41.75 3.99
2455 2557 9.674824 CTTATAGGGACTTATAACTGTAACGTG 57.325 37.037 0.00 0.00 41.75 4.49
2456 2558 5.334724 AGGGACTTATAACTGTAACGTGG 57.665 43.478 0.00 0.00 27.25 4.94
2457 2559 4.774200 AGGGACTTATAACTGTAACGTGGT 59.226 41.667 0.00 0.00 27.25 4.16
2458 2560 5.105063 GGGACTTATAACTGTAACGTGGTC 58.895 45.833 0.00 0.00 0.00 4.02
2459 2561 5.105595 GGGACTTATAACTGTAACGTGGTCT 60.106 44.000 0.00 0.00 0.00 3.85
2460 2562 6.393171 GGACTTATAACTGTAACGTGGTCTT 58.607 40.000 0.00 0.00 0.00 3.01
2461 2563 6.870439 GGACTTATAACTGTAACGTGGTCTTT 59.130 38.462 0.00 0.00 0.00 2.52
2462 2564 7.386025 GGACTTATAACTGTAACGTGGTCTTTT 59.614 37.037 0.00 0.00 0.00 2.27
2463 2565 9.410556 GACTTATAACTGTAACGTGGTCTTTTA 57.589 33.333 0.00 0.00 0.00 1.52
2464 2566 9.415544 ACTTATAACTGTAACGTGGTCTTTTAG 57.584 33.333 0.00 0.00 0.00 1.85
2465 2567 9.415544 CTTATAACTGTAACGTGGTCTTTTAGT 57.584 33.333 0.00 0.00 0.00 2.24
2466 2568 7.880059 ATAACTGTAACGTGGTCTTTTAGTC 57.120 36.000 0.00 0.00 0.00 2.59
2467 2569 4.625028 ACTGTAACGTGGTCTTTTAGTCC 58.375 43.478 0.00 0.00 0.00 3.85
2468 2570 3.641648 TGTAACGTGGTCTTTTAGTCCG 58.358 45.455 0.00 0.00 0.00 4.79
2469 2571 2.896745 AACGTGGTCTTTTAGTCCGT 57.103 45.000 0.00 0.00 0.00 4.69
2470 2572 2.144482 ACGTGGTCTTTTAGTCCGTG 57.856 50.000 0.00 0.00 0.00 4.94
2471 2573 1.410153 ACGTGGTCTTTTAGTCCGTGT 59.590 47.619 0.00 0.00 0.00 4.49
2472 2574 2.159057 ACGTGGTCTTTTAGTCCGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
2473 2575 3.068024 ACGTGGTCTTTTAGTCCGTGTTA 59.932 43.478 0.00 0.00 0.00 2.41
2474 2576 4.050553 CGTGGTCTTTTAGTCCGTGTTAA 58.949 43.478 0.00 0.00 0.00 2.01
2475 2577 4.149396 CGTGGTCTTTTAGTCCGTGTTAAG 59.851 45.833 0.00 0.00 0.00 1.85
2476 2578 4.060205 TGGTCTTTTAGTCCGTGTTAAGC 58.940 43.478 0.00 0.00 0.00 3.09
2477 2579 3.434641 GGTCTTTTAGTCCGTGTTAAGCC 59.565 47.826 0.00 0.00 0.00 4.35
2478 2580 3.434641 GTCTTTTAGTCCGTGTTAAGCCC 59.565 47.826 0.00 0.00 0.00 5.19
2479 2581 2.477845 TTTAGTCCGTGTTAAGCCCC 57.522 50.000 0.00 0.00 0.00 5.80
2480 2582 1.350071 TTAGTCCGTGTTAAGCCCCA 58.650 50.000 0.00 0.00 0.00 4.96
2481 2583 0.609662 TAGTCCGTGTTAAGCCCCAC 59.390 55.000 0.00 0.00 0.00 4.61
2482 2584 1.071814 GTCCGTGTTAAGCCCCACA 59.928 57.895 0.00 0.00 0.00 4.17
2483 2585 0.535553 GTCCGTGTTAAGCCCCACAA 60.536 55.000 0.00 0.00 0.00 3.33
2484 2586 0.183014 TCCGTGTTAAGCCCCACAAA 59.817 50.000 0.00 0.00 0.00 2.83
2485 2587 0.312729 CCGTGTTAAGCCCCACAAAC 59.687 55.000 0.00 0.00 0.00 2.93
2486 2588 0.312729 CGTGTTAAGCCCCACAAACC 59.687 55.000 0.00 0.00 0.00 3.27
2487 2589 1.404843 GTGTTAAGCCCCACAAACCA 58.595 50.000 0.00 0.00 0.00 3.67
2488 2590 1.757699 GTGTTAAGCCCCACAAACCAA 59.242 47.619 0.00 0.00 0.00 3.67
2489 2591 2.168728 GTGTTAAGCCCCACAAACCAAA 59.831 45.455 0.00 0.00 0.00 3.28
2490 2592 2.168728 TGTTAAGCCCCACAAACCAAAC 59.831 45.455 0.00 0.00 0.00 2.93
2491 2593 2.160721 TAAGCCCCACAAACCAAACA 57.839 45.000 0.00 0.00 0.00 2.83
2492 2594 0.829990 AAGCCCCACAAACCAAACAG 59.170 50.000 0.00 0.00 0.00 3.16
2493 2595 1.048160 AGCCCCACAAACCAAACAGG 61.048 55.000 0.00 0.00 45.67 4.00
2507 2609 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
2508 2610 5.627135 CCAAACAGGTAGGGACTTTTTAGA 58.373 41.667 0.00 0.00 41.75 2.10
2509 2611 5.705905 CCAAACAGGTAGGGACTTTTTAGAG 59.294 44.000 0.00 0.00 41.75 2.43
2510 2612 4.554960 ACAGGTAGGGACTTTTTAGAGC 57.445 45.455 0.00 0.00 41.75 4.09
2511 2613 3.908103 ACAGGTAGGGACTTTTTAGAGCA 59.092 43.478 0.00 0.00 41.75 4.26
2512 2614 4.536489 ACAGGTAGGGACTTTTTAGAGCAT 59.464 41.667 0.00 0.00 41.75 3.79
2513 2615 5.119694 CAGGTAGGGACTTTTTAGAGCATC 58.880 45.833 0.00 0.00 41.75 3.91
2514 2616 5.033522 AGGTAGGGACTTTTTAGAGCATCT 58.966 41.667 0.00 0.00 46.13 2.90
2515 2617 5.129650 AGGTAGGGACTTTTTAGAGCATCTC 59.870 44.000 0.00 0.00 41.12 2.75
2516 2618 4.495690 AGGGACTTTTTAGAGCATCTCC 57.504 45.455 0.00 0.00 35.44 3.71
2517 2619 3.846588 AGGGACTTTTTAGAGCATCTCCA 59.153 43.478 0.00 0.00 35.44 3.86
2518 2620 4.080638 AGGGACTTTTTAGAGCATCTCCAG 60.081 45.833 0.00 0.00 35.44 3.86
2519 2621 7.609059 AGGGACTTTTTAGAGCATCTCCAGC 62.609 48.000 0.00 0.00 35.44 4.85
2524 2626 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
2536 2638 4.101448 CCGTTGGCCTCCCAGGAG 62.101 72.222 3.32 6.73 43.37 3.69
2549 2651 1.680338 CCAGGAGGGGCTAAAAATCG 58.320 55.000 0.00 0.00 0.00 3.34
2550 2652 1.025041 CAGGAGGGGCTAAAAATCGC 58.975 55.000 0.00 0.00 0.00 4.58
2551 2653 0.106669 AGGAGGGGCTAAAAATCGCC 60.107 55.000 0.00 0.00 45.55 5.54
2555 2657 4.678423 GGCTAAAAATCGCCCCCT 57.322 55.556 0.00 0.00 40.43 4.79
2556 2658 2.115510 GGCTAAAAATCGCCCCCTG 58.884 57.895 0.00 0.00 40.43 4.45
2557 2659 1.391933 GGCTAAAAATCGCCCCCTGG 61.392 60.000 0.00 0.00 40.43 4.45
2579 2681 4.460873 GCACCGGCGCTAAACAGC 62.461 66.667 7.34 0.39 0.00 4.40
2647 2749 2.923643 TGAAAAAGTCAAATACGGCGC 58.076 42.857 6.90 0.00 31.51 6.53
2648 2750 2.290916 TGAAAAAGTCAAATACGGCGCA 59.709 40.909 10.83 0.00 31.51 6.09
2649 2751 3.243101 TGAAAAAGTCAAATACGGCGCAA 60.243 39.130 10.83 0.00 31.51 4.85
2650 2752 3.357166 AAAAGTCAAATACGGCGCAAA 57.643 38.095 10.83 0.00 0.00 3.68
2651 2753 2.325509 AAGTCAAATACGGCGCAAAC 57.674 45.000 10.83 0.00 0.00 2.93
2652 2754 1.231221 AGTCAAATACGGCGCAAACA 58.769 45.000 10.83 0.00 0.00 2.83
2653 2755 1.069500 AGTCAAATACGGCGCAAACAC 60.069 47.619 10.83 0.00 0.00 3.32
2654 2756 0.110599 TCAAATACGGCGCAAACACG 60.111 50.000 10.83 5.43 0.00 4.49
2655 2757 1.062873 CAAATACGGCGCAAACACGG 61.063 55.000 10.83 0.00 0.00 4.94
2661 2763 2.255252 GCGCAAACACGGCTCAAT 59.745 55.556 0.30 0.00 0.00 2.57
2662 2764 1.371635 GCGCAAACACGGCTCAATT 60.372 52.632 0.30 0.00 0.00 2.32
2663 2765 0.939106 GCGCAAACACGGCTCAATTT 60.939 50.000 0.30 0.00 0.00 1.82
2664 2766 1.486439 CGCAAACACGGCTCAATTTT 58.514 45.000 0.00 0.00 0.00 1.82
2665 2767 2.656085 CGCAAACACGGCTCAATTTTA 58.344 42.857 0.00 0.00 0.00 1.52
2666 2768 3.241701 CGCAAACACGGCTCAATTTTAT 58.758 40.909 0.00 0.00 0.00 1.40
2667 2769 3.300590 CGCAAACACGGCTCAATTTTATC 59.699 43.478 0.00 0.00 0.00 1.75
2668 2770 3.300590 GCAAACACGGCTCAATTTTATCG 59.699 43.478 0.00 0.00 0.00 2.92
2669 2771 2.825086 ACACGGCTCAATTTTATCGC 57.175 45.000 0.00 0.00 0.00 4.58
2670 2772 2.080693 ACACGGCTCAATTTTATCGCA 58.919 42.857 0.00 0.00 0.00 5.10
2671 2773 2.486203 ACACGGCTCAATTTTATCGCAA 59.514 40.909 0.00 0.00 0.00 4.85
2672 2774 3.057876 ACACGGCTCAATTTTATCGCAAA 60.058 39.130 0.00 0.00 0.00 3.68
2673 2775 3.300590 CACGGCTCAATTTTATCGCAAAC 59.699 43.478 0.00 0.00 0.00 2.93
2674 2776 3.057876 ACGGCTCAATTTTATCGCAAACA 60.058 39.130 0.00 0.00 0.00 2.83
2675 2777 4.104776 CGGCTCAATTTTATCGCAAACAT 58.895 39.130 0.00 0.00 0.00 2.71
2676 2778 4.204978 CGGCTCAATTTTATCGCAAACATC 59.795 41.667 0.00 0.00 0.00 3.06
2677 2779 5.101628 GGCTCAATTTTATCGCAAACATCA 58.898 37.500 0.00 0.00 0.00 3.07
2678 2780 5.230726 GGCTCAATTTTATCGCAAACATCAG 59.769 40.000 0.00 0.00 0.00 2.90
2679 2781 5.276067 GCTCAATTTTATCGCAAACATCAGC 60.276 40.000 0.00 0.00 0.00 4.26
2686 2788 3.280532 GCAAACATCAGCGAGTTCG 57.719 52.632 0.00 0.00 43.27 3.95
2687 2789 0.512952 GCAAACATCAGCGAGTTCGT 59.487 50.000 3.27 0.00 42.22 3.85
2688 2790 1.069906 GCAAACATCAGCGAGTTCGTT 60.070 47.619 3.27 0.00 42.22 3.85
2689 2791 2.827555 CAAACATCAGCGAGTTCGTTC 58.172 47.619 3.27 0.00 42.22 3.95
2690 2792 2.148916 AACATCAGCGAGTTCGTTCA 57.851 45.000 3.27 0.00 42.22 3.18
2691 2793 2.148916 ACATCAGCGAGTTCGTTCAA 57.851 45.000 3.27 0.00 42.22 2.69
2692 2794 2.479837 ACATCAGCGAGTTCGTTCAAA 58.520 42.857 3.27 0.00 42.22 2.69
2693 2795 3.067106 ACATCAGCGAGTTCGTTCAAAT 58.933 40.909 3.27 0.00 42.22 2.32
2694 2796 3.498397 ACATCAGCGAGTTCGTTCAAATT 59.502 39.130 3.27 0.00 42.22 1.82
2695 2797 4.024048 ACATCAGCGAGTTCGTTCAAATTT 60.024 37.500 3.27 0.00 42.22 1.82
2696 2798 5.178623 ACATCAGCGAGTTCGTTCAAATTTA 59.821 36.000 3.27 0.00 42.22 1.40
2697 2799 5.660629 TCAGCGAGTTCGTTCAAATTTAA 57.339 34.783 3.27 0.00 42.22 1.52
2698 2800 6.050454 TCAGCGAGTTCGTTCAAATTTAAA 57.950 33.333 3.27 0.00 42.22 1.52
2699 2801 5.905181 TCAGCGAGTTCGTTCAAATTTAAAC 59.095 36.000 3.27 0.00 42.22 2.01
2700 2802 5.679355 CAGCGAGTTCGTTCAAATTTAAACA 59.321 36.000 5.09 0.00 42.22 2.83
2701 2803 6.359617 CAGCGAGTTCGTTCAAATTTAAACAT 59.640 34.615 5.09 0.00 42.22 2.71
2702 2804 7.532546 CAGCGAGTTCGTTCAAATTTAAACATA 59.467 33.333 5.09 0.00 42.22 2.29
2703 2805 8.234546 AGCGAGTTCGTTCAAATTTAAACATAT 58.765 29.630 5.09 0.00 42.22 1.78
2704 2806 8.846607 GCGAGTTCGTTCAAATTTAAACATATT 58.153 29.630 5.09 0.00 42.22 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.571810 GAATAATGTTCAATTACTTCATGTGCA 57.428 29.630 0.00 0.00 0.00 4.57
1 2 9.793252 AGAATAATGTTCAATTACTTCATGTGC 57.207 29.630 0.00 0.00 0.00 4.57
44 45 8.938883 ACTACTAACAAATCATGTAGGGATGAT 58.061 33.333 0.00 0.00 42.99 2.45
45 46 8.319057 ACTACTAACAAATCATGTAGGGATGA 57.681 34.615 0.00 0.00 42.99 2.92
48 49 8.647796 CCATACTACTAACAAATCATGTAGGGA 58.352 37.037 0.00 0.00 42.99 4.20
49 50 8.429641 ACCATACTACTAACAAATCATGTAGGG 58.570 37.037 0.00 0.00 42.99 3.53
50 51 9.261180 CACCATACTACTAACAAATCATGTAGG 57.739 37.037 0.00 0.00 42.99 3.18
51 52 9.817809 ACACCATACTACTAACAAATCATGTAG 57.182 33.333 0.00 0.00 42.99 2.74
53 54 9.817809 CTACACCATACTACTAACAAATCATGT 57.182 33.333 0.00 0.00 46.82 3.21
57 58 9.032420 GCTTCTACACCATACTACTAACAAATC 57.968 37.037 0.00 0.00 0.00 2.17
58 59 8.537016 TGCTTCTACACCATACTACTAACAAAT 58.463 33.333 0.00 0.00 0.00 2.32
59 60 7.898918 TGCTTCTACACCATACTACTAACAAA 58.101 34.615 0.00 0.00 0.00 2.83
60 61 7.470935 TGCTTCTACACCATACTACTAACAA 57.529 36.000 0.00 0.00 0.00 2.83
61 62 7.470935 TTGCTTCTACACCATACTACTAACA 57.529 36.000 0.00 0.00 0.00 2.41
62 63 8.767478 TTTTGCTTCTACACCATACTACTAAC 57.233 34.615 0.00 0.00 0.00 2.34
63 64 9.595823 GATTTTGCTTCTACACCATACTACTAA 57.404 33.333 0.00 0.00 0.00 2.24
64 65 8.978472 AGATTTTGCTTCTACACCATACTACTA 58.022 33.333 0.00 0.00 0.00 1.82
65 66 7.852263 AGATTTTGCTTCTACACCATACTACT 58.148 34.615 0.00 0.00 0.00 2.57
66 67 8.494016 AAGATTTTGCTTCTACACCATACTAC 57.506 34.615 0.00 0.00 0.00 2.73
68 69 9.515226 TTTAAGATTTTGCTTCTACACCATACT 57.485 29.630 0.00 0.00 0.00 2.12
69 70 9.774742 CTTTAAGATTTTGCTTCTACACCATAC 57.225 33.333 0.00 0.00 0.00 2.39
70 71 9.515226 ACTTTAAGATTTTGCTTCTACACCATA 57.485 29.630 0.00 0.00 0.00 2.74
71 72 8.409358 ACTTTAAGATTTTGCTTCTACACCAT 57.591 30.769 0.00 0.00 0.00 3.55
72 73 7.817418 ACTTTAAGATTTTGCTTCTACACCA 57.183 32.000 0.00 0.00 0.00 4.17
73 74 7.114953 GCAACTTTAAGATTTTGCTTCTACACC 59.885 37.037 10.30 0.00 40.97 4.16
74 75 7.647715 TGCAACTTTAAGATTTTGCTTCTACAC 59.352 33.333 16.07 0.00 43.86 2.90
75 76 7.647715 GTGCAACTTTAAGATTTTGCTTCTACA 59.352 33.333 16.07 0.00 43.86 2.74
76 77 7.647715 TGTGCAACTTTAAGATTTTGCTTCTAC 59.352 33.333 16.07 8.99 43.86 2.59
77 78 7.711846 TGTGCAACTTTAAGATTTTGCTTCTA 58.288 30.769 16.07 0.00 43.86 2.10
78 79 6.572519 TGTGCAACTTTAAGATTTTGCTTCT 58.427 32.000 16.07 0.00 43.86 2.85
79 80 6.826893 TGTGCAACTTTAAGATTTTGCTTC 57.173 33.333 16.07 11.21 43.86 3.86
80 81 7.334171 ACTTTGTGCAACTTTAAGATTTTGCTT 59.666 29.630 16.07 0.00 43.86 3.91
81 82 6.818142 ACTTTGTGCAACTTTAAGATTTTGCT 59.182 30.769 16.07 0.00 43.86 3.91
82 83 7.003939 ACTTTGTGCAACTTTAAGATTTTGC 57.996 32.000 10.56 10.56 43.80 3.68
88 89 8.875803 CGGTATATACTTTGTGCAACTTTAAGA 58.124 33.333 12.54 0.00 38.04 2.10
89 90 8.875803 TCGGTATATACTTTGTGCAACTTTAAG 58.124 33.333 12.54 0.00 38.04 1.85
90 91 8.774890 TCGGTATATACTTTGTGCAACTTTAA 57.225 30.769 12.54 0.00 38.04 1.52
91 92 8.774890 TTCGGTATATACTTTGTGCAACTTTA 57.225 30.769 12.54 0.00 38.04 1.85
92 93 7.675962 TTCGGTATATACTTTGTGCAACTTT 57.324 32.000 12.54 0.00 38.04 2.66
93 94 7.675962 TTTCGGTATATACTTTGTGCAACTT 57.324 32.000 12.54 0.00 38.04 2.66
94 95 7.675962 TTTTCGGTATATACTTTGTGCAACT 57.324 32.000 12.54 0.00 38.04 3.16
95 96 9.991388 TTATTTTCGGTATATACTTTGTGCAAC 57.009 29.630 12.54 0.00 37.35 4.17
116 117 9.062524 GGCCCTTTGTACTTTCAAAAATTATTT 57.937 29.630 0.00 0.00 36.96 1.40
117 118 7.663905 GGGCCCTTTGTACTTTCAAAAATTATT 59.336 33.333 17.04 0.00 36.96 1.40
118 119 7.165485 GGGCCCTTTGTACTTTCAAAAATTAT 58.835 34.615 17.04 0.00 36.96 1.28
119 120 6.464607 GGGGCCCTTTGTACTTTCAAAAATTA 60.465 38.462 24.38 0.00 36.96 1.40
120 121 5.373222 GGGCCCTTTGTACTTTCAAAAATT 58.627 37.500 17.04 0.00 36.96 1.82
121 122 4.202419 GGGGCCCTTTGTACTTTCAAAAAT 60.202 41.667 24.38 0.00 36.96 1.82
122 123 3.134985 GGGGCCCTTTGTACTTTCAAAAA 59.865 43.478 24.38 0.00 36.96 1.94
123 124 2.701423 GGGGCCCTTTGTACTTTCAAAA 59.299 45.455 24.38 0.00 36.96 2.44
124 125 2.321719 GGGGCCCTTTGTACTTTCAAA 58.678 47.619 24.38 0.00 36.18 2.69
125 126 1.820090 CGGGGCCCTTTGTACTTTCAA 60.820 52.381 24.38 0.00 0.00 2.69
126 127 0.250989 CGGGGCCCTTTGTACTTTCA 60.251 55.000 24.38 0.00 0.00 2.69
127 128 0.963856 CCGGGGCCCTTTGTACTTTC 60.964 60.000 24.38 0.00 0.00 2.62
128 129 1.076014 CCGGGGCCCTTTGTACTTT 59.924 57.895 24.38 0.00 0.00 2.66
129 130 1.212250 ATCCGGGGCCCTTTGTACTT 61.212 55.000 24.38 0.00 0.00 2.24
130 131 1.212250 AATCCGGGGCCCTTTGTACT 61.212 55.000 24.38 0.00 0.00 2.73
131 132 0.750546 GAATCCGGGGCCCTTTGTAC 60.751 60.000 24.38 1.81 0.00 2.90
132 133 0.917333 AGAATCCGGGGCCCTTTGTA 60.917 55.000 24.38 3.28 0.00 2.41
133 134 2.238701 AGAATCCGGGGCCCTTTGT 61.239 57.895 24.38 7.30 0.00 2.83
134 135 1.754234 CAGAATCCGGGGCCCTTTG 60.754 63.158 24.38 12.14 0.00 2.77
135 136 2.683475 CAGAATCCGGGGCCCTTT 59.317 61.111 24.38 11.57 0.00 3.11
136 137 3.420482 CCAGAATCCGGGGCCCTT 61.420 66.667 24.38 7.94 0.00 3.95
137 138 4.760220 ACCAGAATCCGGGGCCCT 62.760 66.667 24.38 0.00 31.45 5.19
138 139 3.296842 AAACCAGAATCCGGGGCCC 62.297 63.158 15.76 15.76 31.45 5.80
139 140 1.753078 GAAACCAGAATCCGGGGCC 60.753 63.158 0.00 0.00 31.45 5.80
140 141 1.001393 TGAAACCAGAATCCGGGGC 60.001 57.895 0.00 0.00 31.45 5.80
141 142 2.868253 GTGAAACCAGAATCCGGGG 58.132 57.895 0.00 0.00 31.45 5.73
154 155 4.679003 TAGGGGCCCGGGGTGAAA 62.679 66.667 25.28 0.00 0.00 2.69
155 156 4.679003 TTAGGGGCCCGGGGTGAA 62.679 66.667 25.28 2.90 0.00 3.18
156 157 4.679003 TTTAGGGGCCCGGGGTGA 62.679 66.667 25.28 0.00 0.00 4.02
157 158 2.921853 GATTTTAGGGGCCCGGGGTG 62.922 65.000 25.28 0.00 0.00 4.61
158 159 2.619159 ATTTTAGGGGCCCGGGGT 60.619 61.111 25.28 1.12 0.00 4.95
159 160 2.197599 GATTTTAGGGGCCCGGGG 59.802 66.667 25.28 9.31 0.00 5.73
160 161 1.150764 GAGATTTTAGGGGCCCGGG 59.849 63.158 19.09 19.09 0.00 5.73
161 162 0.179018 CTGAGATTTTAGGGGCCCGG 60.179 60.000 18.95 0.00 0.00 5.73
162 163 0.179018 CCTGAGATTTTAGGGGCCCG 60.179 60.000 18.95 0.00 0.00 6.13
163 164 1.133761 GTCCTGAGATTTTAGGGGCCC 60.134 57.143 17.12 17.12 34.76 5.80
164 165 1.133761 GGTCCTGAGATTTTAGGGGCC 60.134 57.143 0.00 0.00 34.76 5.80
165 166 1.475213 CGGTCCTGAGATTTTAGGGGC 60.475 57.143 0.00 0.00 34.76 5.80
166 167 1.141053 CCGGTCCTGAGATTTTAGGGG 59.859 57.143 0.00 0.00 34.76 4.79
167 168 1.475213 GCCGGTCCTGAGATTTTAGGG 60.475 57.143 1.90 0.00 34.76 3.53
168 169 1.475213 GGCCGGTCCTGAGATTTTAGG 60.475 57.143 1.90 0.00 35.34 2.69
169 170 1.475213 GGGCCGGTCCTGAGATTTTAG 60.475 57.143 20.78 0.00 34.39 1.85
170 171 0.544697 GGGCCGGTCCTGAGATTTTA 59.455 55.000 20.78 0.00 34.39 1.52
171 172 1.208165 AGGGCCGGTCCTGAGATTTT 61.208 55.000 31.20 0.00 35.47 1.82
172 173 1.616628 AGGGCCGGTCCTGAGATTT 60.617 57.895 31.20 0.00 35.47 2.17
173 174 2.041265 AGGGCCGGTCCTGAGATT 59.959 61.111 31.20 0.00 35.47 2.40
179 180 4.400251 AGTAGCAGGGCCGGTCCT 62.400 66.667 25.80 25.80 37.71 3.85
180 181 4.162690 CAGTAGCAGGGCCGGTCC 62.163 72.222 20.43 20.43 0.00 4.46
181 182 3.075005 TCAGTAGCAGGGCCGGTC 61.075 66.667 1.90 0.00 0.00 4.79
182 183 3.077556 CTCAGTAGCAGGGCCGGT 61.078 66.667 1.90 5.44 0.00 5.28
260 265 8.922058 AAACAATGCAGAATAGAATAAAGCTG 57.078 30.769 0.00 0.00 0.00 4.24
445 469 9.573166 TGAAATCTCTAACTTGGATCTTTCAAA 57.427 29.630 8.56 0.00 0.00 2.69
446 470 9.745018 ATGAAATCTCTAACTTGGATCTTTCAA 57.255 29.630 12.34 0.00 0.00 2.69
447 471 9.170734 CATGAAATCTCTAACTTGGATCTTTCA 57.829 33.333 11.41 11.41 0.00 2.69
448 472 8.619546 CCATGAAATCTCTAACTTGGATCTTTC 58.380 37.037 0.00 0.00 31.94 2.62
449 473 8.112183 ACCATGAAATCTCTAACTTGGATCTTT 58.888 33.333 0.00 0.00 33.66 2.52
450 474 7.637511 ACCATGAAATCTCTAACTTGGATCTT 58.362 34.615 0.00 0.00 33.66 2.40
451 475 7.205515 ACCATGAAATCTCTAACTTGGATCT 57.794 36.000 0.00 0.00 33.66 2.75
452 476 6.484977 GGACCATGAAATCTCTAACTTGGATC 59.515 42.308 0.00 0.00 33.66 3.36
453 477 6.360618 GGACCATGAAATCTCTAACTTGGAT 58.639 40.000 0.00 0.00 33.66 3.41
454 478 5.339200 GGGACCATGAAATCTCTAACTTGGA 60.339 44.000 0.00 0.00 33.66 3.53
455 479 4.884164 GGGACCATGAAATCTCTAACTTGG 59.116 45.833 0.00 0.00 34.95 3.61
456 480 5.500234 TGGGACCATGAAATCTCTAACTTG 58.500 41.667 0.00 0.00 0.00 3.16
457 481 5.779241 TGGGACCATGAAATCTCTAACTT 57.221 39.130 0.00 0.00 0.00 2.66
458 482 5.779241 TTGGGACCATGAAATCTCTAACT 57.221 39.130 0.00 0.00 0.00 2.24
459 483 6.659242 TCTTTTGGGACCATGAAATCTCTAAC 59.341 38.462 0.00 0.00 0.00 2.34
628 652 1.410153 GGCATTTTCTGTGGCTATGGG 59.590 52.381 0.00 0.00 38.91 4.00
685 709 2.594541 GCGAGGCCAAGAAGATACG 58.405 57.895 5.01 0.00 0.00 3.06
732 756 2.676463 GCTCTTCTCACTTGCGAGGAAT 60.676 50.000 5.79 0.00 33.59 3.01
763 787 8.406730 AGAATTTGCAGAAGAGATTTCTTTCT 57.593 30.769 0.00 0.00 43.63 2.52
764 788 9.127006 GAAGAATTTGCAGAAGAGATTTCTTTC 57.873 33.333 0.00 0.00 43.63 2.62
765 789 8.636213 TGAAGAATTTGCAGAAGAGATTTCTTT 58.364 29.630 0.00 0.00 43.63 2.52
766 790 8.174733 TGAAGAATTTGCAGAAGAGATTTCTT 57.825 30.769 0.00 0.00 46.22 2.52
814 838 1.069090 GAGTGAACACCTGCACGGA 59.931 57.895 8.91 0.00 39.88 4.69
861 885 8.381766 CACTAATGCTAAGTGACCATGCATGG 62.382 46.154 38.53 38.53 45.89 3.66
962 993 4.278170 ACCTTGAAATGAAATCTTCGCACA 59.722 37.500 0.00 0.00 0.00 4.57
967 998 5.105595 CCCCTGACCTTGAAATGAAATCTTC 60.106 44.000 0.00 0.00 0.00 2.87
1134 1177 1.153549 GAAGTGGAGCTCGCCGAAT 60.154 57.895 7.83 0.00 0.00 3.34
1512 1599 3.966026 CTCCTGGTTCGCGTCGACC 62.966 68.421 10.58 17.77 34.89 4.79
1635 1729 4.643387 ACCAGCACGAACCTGCCC 62.643 66.667 0.00 0.00 37.96 5.36
1770 1864 2.128035 GTGTTTCCAGTCTCGTCACAG 58.872 52.381 0.00 0.00 0.00 3.66
1798 1892 2.031682 GTGTCCTGTGTTCTTGCATGAC 60.032 50.000 1.02 0.00 33.10 3.06
1819 1913 3.136763 ACGCAGCAAGATGATTATCCTG 58.863 45.455 0.00 0.00 33.64 3.86
1820 1914 3.070734 AGACGCAGCAAGATGATTATCCT 59.929 43.478 0.00 0.00 33.64 3.24
1919 2015 5.647658 ACGAGTCATGATGCCAAAAAGATTA 59.352 36.000 0.00 0.00 0.00 1.75
1929 2025 1.600957 CATCCAACGAGTCATGATGCC 59.399 52.381 0.00 0.00 0.00 4.40
1938 2034 1.750399 GGCATGCCATCCAACGAGT 60.750 57.895 32.08 0.00 35.81 4.18
2010 2108 5.126222 GGAAAGCATCCCCTTTTTCTTAGAG 59.874 44.000 0.00 0.00 43.00 2.43
2039 2137 7.590279 TGAAAAACTTCAGATTTAACGATCCC 58.410 34.615 0.00 0.00 0.00 3.85
2095 2193 9.098355 TGCACTAGTGAAAATTCATATGTACTC 57.902 33.333 27.08 2.50 39.73 2.59
2096 2194 9.448438 TTGCACTAGTGAAAATTCATATGTACT 57.552 29.630 27.08 0.00 39.73 2.73
2153 2252 0.943835 TCGTGACCGTGTGAGCAATG 60.944 55.000 0.00 0.00 35.01 2.82
2220 2321 7.506114 TGGAACCTTATCGCACTTATTTATCT 58.494 34.615 0.00 0.00 0.00 1.98
2247 2348 4.099266 TGCTTTTGCCAAACTGTCTGTATT 59.901 37.500 0.00 0.00 46.87 1.89
2250 2351 1.824230 TGCTTTTGCCAAACTGTCTGT 59.176 42.857 0.00 0.00 46.87 3.41
2255 2357 2.472816 ACGATTGCTTTTGCCAAACTG 58.527 42.857 0.00 0.00 46.87 3.16
2290 2392 9.889128 CAATAAATCCATGAAAATAAACACCCT 57.111 29.630 0.00 0.00 0.00 4.34
2291 2393 9.108284 CCAATAAATCCATGAAAATAAACACCC 57.892 33.333 0.00 0.00 0.00 4.61
2292 2394 9.665719 ACCAATAAATCCATGAAAATAAACACC 57.334 29.630 0.00 0.00 0.00 4.16
2299 2401 9.278011 TCCCTAAACCAATAAATCCATGAAAAT 57.722 29.630 0.00 0.00 0.00 1.82
2300 2402 8.536175 GTCCCTAAACCAATAAATCCATGAAAA 58.464 33.333 0.00 0.00 0.00 2.29
2301 2403 7.898636 AGTCCCTAAACCAATAAATCCATGAAA 59.101 33.333 0.00 0.00 0.00 2.69
2302 2404 7.418378 AGTCCCTAAACCAATAAATCCATGAA 58.582 34.615 0.00 0.00 0.00 2.57
2303 2405 6.980577 AGTCCCTAAACCAATAAATCCATGA 58.019 36.000 0.00 0.00 0.00 3.07
2304 2406 7.660030 AAGTCCCTAAACCAATAAATCCATG 57.340 36.000 0.00 0.00 0.00 3.66
2305 2407 9.777008 TTTAAGTCCCTAAACCAATAAATCCAT 57.223 29.630 0.00 0.00 0.00 3.41
2306 2408 9.603189 TTTTAAGTCCCTAAACCAATAAATCCA 57.397 29.630 0.00 0.00 0.00 3.41
2340 2442 9.983024 TCCTGTTTGGTTTAGATGGAATTTATA 57.017 29.630 0.00 0.00 37.07 0.98
2341 2443 8.893563 TCCTGTTTGGTTTAGATGGAATTTAT 57.106 30.769 0.00 0.00 37.07 1.40
2342 2444 7.396055 CCTCCTGTTTGGTTTAGATGGAATTTA 59.604 37.037 0.00 0.00 37.07 1.40
2343 2445 6.211384 CCTCCTGTTTGGTTTAGATGGAATTT 59.789 38.462 0.00 0.00 37.07 1.82
2344 2446 5.716703 CCTCCTGTTTGGTTTAGATGGAATT 59.283 40.000 0.00 0.00 37.07 2.17
2345 2447 5.264395 CCTCCTGTTTGGTTTAGATGGAAT 58.736 41.667 0.00 0.00 37.07 3.01
2346 2448 4.508405 CCCTCCTGTTTGGTTTAGATGGAA 60.508 45.833 0.00 0.00 37.07 3.53
2347 2449 3.010138 CCCTCCTGTTTGGTTTAGATGGA 59.990 47.826 0.00 0.00 37.07 3.41
2348 2450 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
2349 2451 4.301072 TCCCTCCTGTTTGGTTTAGATG 57.699 45.455 0.00 0.00 37.07 2.90
2350 2452 5.536497 AATCCCTCCTGTTTGGTTTAGAT 57.464 39.130 0.00 0.00 37.07 1.98
2351 2453 5.333566 AAATCCCTCCTGTTTGGTTTAGA 57.666 39.130 0.00 0.00 37.07 2.10
2352 2454 7.502561 CCTATAAATCCCTCCTGTTTGGTTTAG 59.497 40.741 0.00 0.00 37.07 1.85
2353 2455 7.351166 CCTATAAATCCCTCCTGTTTGGTTTA 58.649 38.462 0.00 0.00 37.07 2.01
2354 2456 6.194967 CCTATAAATCCCTCCTGTTTGGTTT 58.805 40.000 0.00 0.00 37.07 3.27
2355 2457 5.340863 CCCTATAAATCCCTCCTGTTTGGTT 60.341 44.000 0.00 0.00 37.07 3.67
2356 2458 4.168088 CCCTATAAATCCCTCCTGTTTGGT 59.832 45.833 0.00 0.00 37.07 3.67
2357 2459 4.415512 TCCCTATAAATCCCTCCTGTTTGG 59.584 45.833 0.00 0.00 37.10 3.28
2358 2460 5.132816 AGTCCCTATAAATCCCTCCTGTTTG 59.867 44.000 0.00 0.00 0.00 2.93
2359 2461 5.297799 AGTCCCTATAAATCCCTCCTGTTT 58.702 41.667 0.00 0.00 0.00 2.83
2360 2462 4.909284 AGTCCCTATAAATCCCTCCTGTT 58.091 43.478 0.00 0.00 0.00 3.16
2361 2463 4.578149 AGTCCCTATAAATCCCTCCTGT 57.422 45.455 0.00 0.00 0.00 4.00
2362 2464 7.072581 ACTTTAAGTCCCTATAAATCCCTCCTG 59.927 40.741 0.00 0.00 0.00 3.86
2363 2465 7.072581 CACTTTAAGTCCCTATAAATCCCTCCT 59.927 40.741 0.00 0.00 0.00 3.69
2364 2466 7.147355 ACACTTTAAGTCCCTATAAATCCCTCC 60.147 40.741 0.00 0.00 0.00 4.30
2365 2467 7.715686 CACACTTTAAGTCCCTATAAATCCCTC 59.284 40.741 0.00 0.00 0.00 4.30
2366 2468 7.574607 CACACTTTAAGTCCCTATAAATCCCT 58.425 38.462 0.00 0.00 0.00 4.20
2367 2469 6.262496 GCACACTTTAAGTCCCTATAAATCCC 59.738 42.308 0.00 0.00 0.00 3.85
2368 2470 6.826741 TGCACACTTTAAGTCCCTATAAATCC 59.173 38.462 0.00 0.00 0.00 3.01
2369 2471 7.859325 TGCACACTTTAAGTCCCTATAAATC 57.141 36.000 0.00 0.00 0.00 2.17
2370 2472 8.823220 AATGCACACTTTAAGTCCCTATAAAT 57.177 30.769 0.00 0.00 0.00 1.40
2371 2473 8.519526 CAAATGCACACTTTAAGTCCCTATAAA 58.480 33.333 0.00 0.00 0.00 1.40
2372 2474 7.122055 CCAAATGCACACTTTAAGTCCCTATAA 59.878 37.037 0.00 0.00 0.00 0.98
2373 2475 6.601613 CCAAATGCACACTTTAAGTCCCTATA 59.398 38.462 0.00 0.00 0.00 1.31
2374 2476 5.418840 CCAAATGCACACTTTAAGTCCCTAT 59.581 40.000 0.00 0.00 0.00 2.57
2375 2477 4.764823 CCAAATGCACACTTTAAGTCCCTA 59.235 41.667 0.00 0.00 0.00 3.53
2376 2478 3.573967 CCAAATGCACACTTTAAGTCCCT 59.426 43.478 0.00 0.00 0.00 4.20
2377 2479 3.306019 CCCAAATGCACACTTTAAGTCCC 60.306 47.826 0.00 0.00 0.00 4.46
2378 2480 3.572255 TCCCAAATGCACACTTTAAGTCC 59.428 43.478 0.00 0.00 0.00 3.85
2379 2481 4.278419 AGTCCCAAATGCACACTTTAAGTC 59.722 41.667 0.00 0.00 0.00 3.01
2380 2482 4.215109 AGTCCCAAATGCACACTTTAAGT 58.785 39.130 0.00 0.00 0.00 2.24
2381 2483 4.853924 AGTCCCAAATGCACACTTTAAG 57.146 40.909 0.00 0.00 0.00 1.85
2382 2484 6.909550 ATAAGTCCCAAATGCACACTTTAA 57.090 33.333 0.00 0.00 0.00 1.52
2383 2485 8.410673 TTTATAAGTCCCAAATGCACACTTTA 57.589 30.769 0.00 0.00 0.00 1.85
2384 2486 6.909550 TTATAAGTCCCAAATGCACACTTT 57.090 33.333 0.00 0.00 0.00 2.66
2385 2487 6.909550 TTTATAAGTCCCAAATGCACACTT 57.090 33.333 0.00 0.00 0.00 3.16
2386 2488 6.909550 TTTTATAAGTCCCAAATGCACACT 57.090 33.333 0.00 0.00 0.00 3.55
2387 2489 9.301153 CTTATTTTATAAGTCCCAAATGCACAC 57.699 33.333 0.00 0.00 0.00 3.82
2388 2490 9.249053 TCTTATTTTATAAGTCCCAAATGCACA 57.751 29.630 0.00 0.00 0.00 4.57
2389 2491 9.516314 GTCTTATTTTATAAGTCCCAAATGCAC 57.484 33.333 0.00 0.00 0.00 4.57
2390 2492 9.474313 AGTCTTATTTTATAAGTCCCAAATGCA 57.526 29.630 0.00 0.00 0.00 3.96
2391 2493 9.952188 GAGTCTTATTTTATAAGTCCCAAATGC 57.048 33.333 6.39 0.00 0.00 3.56
2417 2519 7.654022 AAGTCCCTATAAGTCTCTTCTTGAG 57.346 40.000 0.00 0.00 43.96 3.02
2423 2525 9.939424 ACAGTTATAAGTCCCTATAAGTCTCTT 57.061 33.333 0.00 0.00 28.90 2.85
2427 2529 9.890352 CGTTACAGTTATAAGTCCCTATAAGTC 57.110 37.037 0.00 0.00 28.90 3.01
2428 2530 9.413734 ACGTTACAGTTATAAGTCCCTATAAGT 57.586 33.333 0.00 0.00 30.67 2.24
2429 2531 9.674824 CACGTTACAGTTATAAGTCCCTATAAG 57.325 37.037 0.00 0.00 0.00 1.73
2430 2532 8.632679 CCACGTTACAGTTATAAGTCCCTATAA 58.367 37.037 0.00 0.00 0.00 0.98
2431 2533 7.779798 ACCACGTTACAGTTATAAGTCCCTATA 59.220 37.037 0.00 0.00 0.00 1.31
2432 2534 6.608808 ACCACGTTACAGTTATAAGTCCCTAT 59.391 38.462 0.00 0.00 0.00 2.57
2433 2535 5.951747 ACCACGTTACAGTTATAAGTCCCTA 59.048 40.000 0.00 0.00 0.00 3.53
2434 2536 4.774200 ACCACGTTACAGTTATAAGTCCCT 59.226 41.667 0.00 0.00 0.00 4.20
2435 2537 5.077134 ACCACGTTACAGTTATAAGTCCC 57.923 43.478 0.00 0.00 0.00 4.46
2436 2538 5.958955 AGACCACGTTACAGTTATAAGTCC 58.041 41.667 0.00 0.00 0.00 3.85
2437 2539 7.880059 AAAGACCACGTTACAGTTATAAGTC 57.120 36.000 0.00 0.00 0.00 3.01
2438 2540 9.415544 CTAAAAGACCACGTTACAGTTATAAGT 57.584 33.333 0.00 0.00 0.00 2.24
2439 2541 9.415544 ACTAAAAGACCACGTTACAGTTATAAG 57.584 33.333 0.00 0.00 0.00 1.73
2440 2542 9.410556 GACTAAAAGACCACGTTACAGTTATAA 57.589 33.333 0.00 0.00 0.00 0.98
2441 2543 8.028938 GGACTAAAAGACCACGTTACAGTTATA 58.971 37.037 0.00 0.00 30.29 0.98
2442 2544 6.870439 GGACTAAAAGACCACGTTACAGTTAT 59.130 38.462 0.00 0.00 30.29 1.89
2443 2545 6.215845 GGACTAAAAGACCACGTTACAGTTA 58.784 40.000 0.00 0.00 30.29 2.24
2444 2546 5.052481 GGACTAAAAGACCACGTTACAGTT 58.948 41.667 0.00 0.00 30.29 3.16
2445 2547 4.625028 GGACTAAAAGACCACGTTACAGT 58.375 43.478 0.00 0.00 30.29 3.55
2446 2548 3.671928 CGGACTAAAAGACCACGTTACAG 59.328 47.826 0.00 0.00 30.29 2.74
2447 2549 3.068024 ACGGACTAAAAGACCACGTTACA 59.932 43.478 0.00 0.00 30.29 2.41
2448 2550 3.426525 CACGGACTAAAAGACCACGTTAC 59.573 47.826 0.00 0.00 30.29 2.50
2449 2551 3.068024 ACACGGACTAAAAGACCACGTTA 59.932 43.478 0.00 0.00 30.29 3.18
2450 2552 2.159057 ACACGGACTAAAAGACCACGTT 60.159 45.455 0.00 0.00 30.29 3.99
2451 2553 1.410153 ACACGGACTAAAAGACCACGT 59.590 47.619 0.00 0.00 30.29 4.49
2452 2554 2.144482 ACACGGACTAAAAGACCACG 57.856 50.000 0.00 0.00 30.29 4.94
2453 2555 4.084171 GCTTAACACGGACTAAAAGACCAC 60.084 45.833 0.00 0.00 30.29 4.16
2454 2556 4.060205 GCTTAACACGGACTAAAAGACCA 58.940 43.478 0.00 0.00 30.29 4.02
2455 2557 3.434641 GGCTTAACACGGACTAAAAGACC 59.565 47.826 0.00 0.00 0.00 3.85
2456 2558 3.434641 GGGCTTAACACGGACTAAAAGAC 59.565 47.826 0.00 0.00 0.00 3.01
2457 2559 3.557686 GGGGCTTAACACGGACTAAAAGA 60.558 47.826 0.00 0.00 0.00 2.52
2458 2560 2.745821 GGGGCTTAACACGGACTAAAAG 59.254 50.000 0.00 0.00 0.00 2.27
2459 2561 2.106166 TGGGGCTTAACACGGACTAAAA 59.894 45.455 0.00 0.00 0.00 1.52
2460 2562 1.698532 TGGGGCTTAACACGGACTAAA 59.301 47.619 0.00 0.00 0.00 1.85
2461 2563 1.002315 GTGGGGCTTAACACGGACTAA 59.998 52.381 0.00 0.00 0.00 2.24
2462 2564 0.609662 GTGGGGCTTAACACGGACTA 59.390 55.000 0.00 0.00 0.00 2.59
2463 2565 1.373812 GTGGGGCTTAACACGGACT 59.626 57.895 0.00 0.00 0.00 3.85
2464 2566 0.535553 TTGTGGGGCTTAACACGGAC 60.536 55.000 0.00 0.00 40.39 4.79
2465 2567 0.183014 TTTGTGGGGCTTAACACGGA 59.817 50.000 0.00 0.00 40.39 4.69
2466 2568 0.312729 GTTTGTGGGGCTTAACACGG 59.687 55.000 0.00 0.00 40.39 4.94
2467 2569 0.312729 GGTTTGTGGGGCTTAACACG 59.687 55.000 0.00 0.00 40.39 4.49
2468 2570 1.404843 TGGTTTGTGGGGCTTAACAC 58.595 50.000 0.00 0.00 38.08 3.32
2469 2571 2.160721 TTGGTTTGTGGGGCTTAACA 57.839 45.000 0.00 0.00 0.00 2.41
2470 2572 2.168728 TGTTTGGTTTGTGGGGCTTAAC 59.831 45.455 0.00 0.00 0.00 2.01
2471 2573 2.432510 CTGTTTGGTTTGTGGGGCTTAA 59.567 45.455 0.00 0.00 0.00 1.85
2472 2574 2.035632 CTGTTTGGTTTGTGGGGCTTA 58.964 47.619 0.00 0.00 0.00 3.09
2473 2575 0.829990 CTGTTTGGTTTGTGGGGCTT 59.170 50.000 0.00 0.00 0.00 4.35
2474 2576 1.048160 CCTGTTTGGTTTGTGGGGCT 61.048 55.000 0.00 0.00 0.00 5.19
2475 2577 1.445518 CCTGTTTGGTTTGTGGGGC 59.554 57.895 0.00 0.00 0.00 5.80
2485 2587 5.627135 TCTAAAAAGTCCCTACCTGTTTGG 58.373 41.667 0.00 0.00 42.93 3.28
2486 2588 5.181433 GCTCTAAAAAGTCCCTACCTGTTTG 59.819 44.000 0.00 0.00 0.00 2.93
2487 2589 5.163131 TGCTCTAAAAAGTCCCTACCTGTTT 60.163 40.000 0.00 0.00 0.00 2.83
2488 2590 4.349930 TGCTCTAAAAAGTCCCTACCTGTT 59.650 41.667 0.00 0.00 0.00 3.16
2489 2591 3.908103 TGCTCTAAAAAGTCCCTACCTGT 59.092 43.478 0.00 0.00 0.00 4.00
2490 2592 4.553330 TGCTCTAAAAAGTCCCTACCTG 57.447 45.455 0.00 0.00 0.00 4.00
2491 2593 5.033522 AGATGCTCTAAAAAGTCCCTACCT 58.966 41.667 0.00 0.00 0.00 3.08
2492 2594 5.360649 AGATGCTCTAAAAAGTCCCTACC 57.639 43.478 0.00 0.00 0.00 3.18
2493 2595 5.104900 TGGAGATGCTCTAAAAAGTCCCTAC 60.105 44.000 0.00 0.00 0.00 3.18
2494 2596 5.030147 TGGAGATGCTCTAAAAAGTCCCTA 58.970 41.667 0.00 0.00 0.00 3.53
2495 2597 3.846588 TGGAGATGCTCTAAAAAGTCCCT 59.153 43.478 0.00 0.00 0.00 4.20
2496 2598 4.195416 CTGGAGATGCTCTAAAAAGTCCC 58.805 47.826 0.00 0.00 0.00 4.46
2497 2599 3.625313 GCTGGAGATGCTCTAAAAAGTCC 59.375 47.826 0.00 0.00 0.00 3.85
2498 2600 3.625313 GGCTGGAGATGCTCTAAAAAGTC 59.375 47.826 0.00 0.00 0.00 3.01
2499 2601 3.615155 GGCTGGAGATGCTCTAAAAAGT 58.385 45.455 0.00 0.00 0.00 2.66
2500 2602 2.611292 CGGCTGGAGATGCTCTAAAAAG 59.389 50.000 0.00 0.00 0.00 2.27
2501 2603 2.027192 ACGGCTGGAGATGCTCTAAAAA 60.027 45.455 0.00 0.00 0.00 1.94
2502 2604 1.555075 ACGGCTGGAGATGCTCTAAAA 59.445 47.619 0.00 0.00 0.00 1.52
2503 2605 1.195115 ACGGCTGGAGATGCTCTAAA 58.805 50.000 0.00 0.00 0.00 1.85
2504 2606 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
2505 2607 0.461548 CAACGGCTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
2506 2608 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
2507 2609 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
2519 2621 4.101448 CTCCTGGGAGGCCAACGG 62.101 72.222 5.01 0.00 38.51 4.44
2530 2632 1.680338 CGATTTTTAGCCCCTCCTGG 58.320 55.000 0.00 0.00 0.00 4.45
2531 2633 1.025041 GCGATTTTTAGCCCCTCCTG 58.975 55.000 0.00 0.00 0.00 3.86
2532 2634 3.496675 GCGATTTTTAGCCCCTCCT 57.503 52.632 0.00 0.00 0.00 3.69
2539 2641 1.391933 CCCAGGGGGCGATTTTTAGC 61.392 60.000 0.00 0.00 35.35 3.09
2540 2642 2.807247 CCCAGGGGGCGATTTTTAG 58.193 57.895 0.00 0.00 35.35 1.85
2562 2664 4.460873 GCTGTTTAGCGCCGGTGC 62.461 66.667 32.51 32.51 40.67 5.01
2570 2672 2.690778 CCCCAGTGCGCTGTTTAGC 61.691 63.158 24.85 0.00 46.62 3.09
2571 2673 2.040544 CCCCCAGTGCGCTGTTTAG 61.041 63.158 24.85 10.11 41.02 1.85
2572 2674 2.033448 CCCCCAGTGCGCTGTTTA 59.967 61.111 24.85 0.00 41.02 2.01
2626 2728 3.243101 TGCGCCGTATTTGACTTTTTCAA 60.243 39.130 4.18 0.00 42.83 2.69
2627 2729 2.290916 TGCGCCGTATTTGACTTTTTCA 59.709 40.909 4.18 0.00 0.00 2.69
2628 2730 2.923643 TGCGCCGTATTTGACTTTTTC 58.076 42.857 4.18 0.00 0.00 2.29
2629 2731 3.357166 TTGCGCCGTATTTGACTTTTT 57.643 38.095 4.18 0.00 0.00 1.94
2630 2732 3.047093 GTTTGCGCCGTATTTGACTTTT 58.953 40.909 4.18 0.00 0.00 2.27
2631 2733 2.033550 TGTTTGCGCCGTATTTGACTTT 59.966 40.909 4.18 0.00 0.00 2.66
2632 2734 1.604755 TGTTTGCGCCGTATTTGACTT 59.395 42.857 4.18 0.00 0.00 3.01
2633 2735 1.069500 GTGTTTGCGCCGTATTTGACT 60.069 47.619 4.18 0.00 0.00 3.41
2634 2736 1.323791 GTGTTTGCGCCGTATTTGAC 58.676 50.000 4.18 0.00 0.00 3.18
2635 2737 0.110599 CGTGTTTGCGCCGTATTTGA 60.111 50.000 4.18 0.00 0.00 2.69
2636 2738 1.062873 CCGTGTTTGCGCCGTATTTG 61.063 55.000 4.18 0.00 0.00 2.32
2637 2739 1.208103 CCGTGTTTGCGCCGTATTT 59.792 52.632 4.18 0.00 0.00 1.40
2638 2740 2.864589 CCGTGTTTGCGCCGTATT 59.135 55.556 4.18 0.00 0.00 1.89
2639 2741 3.795342 GCCGTGTTTGCGCCGTAT 61.795 61.111 4.18 0.00 0.00 3.06
2640 2742 4.973055 AGCCGTGTTTGCGCCGTA 62.973 61.111 4.18 0.00 0.00 4.02
2643 2745 2.747507 AATTGAGCCGTGTTTGCGCC 62.748 55.000 4.18 0.00 0.00 6.53
2644 2746 0.939106 AAATTGAGCCGTGTTTGCGC 60.939 50.000 0.00 0.00 0.00 6.09
2645 2747 1.486439 AAAATTGAGCCGTGTTTGCG 58.514 45.000 0.00 0.00 0.00 4.85
2646 2748 3.300590 CGATAAAATTGAGCCGTGTTTGC 59.699 43.478 0.00 0.00 0.00 3.68
2647 2749 3.300590 GCGATAAAATTGAGCCGTGTTTG 59.699 43.478 0.00 0.00 0.00 2.93
2648 2750 3.057876 TGCGATAAAATTGAGCCGTGTTT 60.058 39.130 0.00 0.00 0.00 2.83
2649 2751 2.486203 TGCGATAAAATTGAGCCGTGTT 59.514 40.909 0.00 0.00 0.00 3.32
2650 2752 2.080693 TGCGATAAAATTGAGCCGTGT 58.919 42.857 0.00 0.00 0.00 4.49
2651 2753 2.823196 TGCGATAAAATTGAGCCGTG 57.177 45.000 0.00 0.00 0.00 4.94
2652 2754 3.057876 TGTTTGCGATAAAATTGAGCCGT 60.058 39.130 0.00 0.00 0.00 5.68
2653 2755 3.497118 TGTTTGCGATAAAATTGAGCCG 58.503 40.909 0.00 0.00 0.00 5.52
2654 2756 5.101628 TGATGTTTGCGATAAAATTGAGCC 58.898 37.500 0.00 0.00 0.00 4.70
2655 2757 5.276067 GCTGATGTTTGCGATAAAATTGAGC 60.276 40.000 0.00 0.00 0.00 4.26
2656 2758 6.252036 GCTGATGTTTGCGATAAAATTGAG 57.748 37.500 0.00 0.00 0.00 3.02
2668 2770 0.512952 ACGAACTCGCTGATGTTTGC 59.487 50.000 0.00 0.00 44.43 3.68
2669 2771 2.220824 TGAACGAACTCGCTGATGTTTG 59.779 45.455 0.00 0.00 44.43 2.93
2670 2772 2.479837 TGAACGAACTCGCTGATGTTT 58.520 42.857 0.00 0.00 44.43 2.83
2671 2773 2.148916 TGAACGAACTCGCTGATGTT 57.851 45.000 0.00 0.00 44.43 2.71
2672 2774 2.148916 TTGAACGAACTCGCTGATGT 57.851 45.000 0.00 0.00 44.43 3.06
2673 2775 3.729526 ATTTGAACGAACTCGCTGATG 57.270 42.857 0.00 0.00 44.43 3.07
2674 2776 4.749245 AAATTTGAACGAACTCGCTGAT 57.251 36.364 0.00 0.00 44.43 2.90
2675 2777 5.660629 TTAAATTTGAACGAACTCGCTGA 57.339 34.783 0.00 0.00 44.43 4.26
2676 2778 5.679355 TGTTTAAATTTGAACGAACTCGCTG 59.321 36.000 17.83 0.00 44.43 5.18
2677 2779 5.812652 TGTTTAAATTTGAACGAACTCGCT 58.187 33.333 17.83 0.00 44.43 4.93
2678 2780 6.669485 ATGTTTAAATTTGAACGAACTCGC 57.331 33.333 17.83 0.00 44.43 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.