>input_sequence_69950
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----------------------------------------------------------------------ATGGCGGCGG
ACGGCGGGCTGAGGAGGCTGTTCGAGAAGCCTCTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGG---AAC
CGCGTCCACCCCAAGAGGC---------CGGTCGACCCGACATCCTTCACCGAGATATTCGGCGAGCTCCACTTCCACGA
GA---AGCAGCAGCAGCCGGACCACGTCGCCCGGGGCAACGTCCTGCCGGCGCCGCGTCCGCCACCTT------------
--CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTGGATCGACGCCGCCGAGAAGAGCAAGGACGACTCGT
CTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG------------------GTGAAGAGGAGCGCGAGCTTC
TCCATGAAGAAGAGCCCGTCCGCGTCGTCCCTGCTGCTCTGCACAGAGGGGCTCGGGTCCGAGAGCACCGTGGACG----
-----TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCGTTCCGCCGCCAGGTGGAGACACGCGACGACGCGGACGTGG
TCGACGC-------GAACCAGGAGGAGAAGGAGAACCAGCGGCCTCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAG
CGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTGCGGAGGGCAGGTTCGTGCTGGTGGAGGTTGTCATCC
CCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTCAGGCTGCAGTTCGCCGGCGCCACCGCACACGCGTAG
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>chr5A_1_TraesCS5A01G127800
TGCACATGAAGTAATTGAACATTATTCTTCTATAGAAAATGATAATCATCCCTACATGATTTGTTAGTAGTATGGTGTAG
AAGCAAAATCTTAAAGTTGCACAAAGTATATACCGAAAATAATTTTTGAAAGTACAAAGGGCCCCGGATTCTGGTTTCAC
CCCGGGCCCCTAAAATCTCAGGACCGGCCCTGCTACTGAGCCATGGCAATATGGCATCCA----TCCATCCATATGTCCC
CTCGTCGTAACTATCAGAATCGGGCAGCTTTATTCTATTCTGCATTGTTTTCCTTCACTC-TTTCGTTATTC------CC
AGTGCACCGCCACCACTGGTGGAACCGTTGTCGACGTAC------------CACCTGAAATCCCTGGCTGAAAATTTCTC
GCTGCCACGCACGCGCACACCCACACTGAAAGCAGAAGCAGCTGGTGCCAAGTTAGAGATTTTTTTTTTTTGAAAGATCC
AAGTTAGAGATTTCATGGTCCCAAAAGACAGATCCATAGATAGATATCTCACTATCTACCCATGTGAGCTGCAGCATTAC
AGCACCGCATTCTTATTTTACCTGCATATTTGCTCTCACTCTGCAGTGCTGGATCGATCCACTTGTGTAAAAAGAAGGAA
ATATTCCAAATCCCATAGCCACAGAAAATGCCTCAATTTCTTATTTTGCAAAATGACAAGAAATGCCCCGTATCTTCTTG
GCCTCGCCTTTTCTCTGACTATATATGTGCTGGCCATTCCTCGCAAGTGAGAAGAGCACAGGAAGAAGAAAGAAATCTCT
TCTGCAAATTCTTCAAAAACCTTGTCCGGATTGACGGTCCGTGCAGGTGTTCACTCAGGTGAGCGAAGTGATCATCTCTC
CATGCCATGCATGGTCACTTAGCATTAGTGCAATTTCGTTTTAGCTGAAT-TTTTCATACTGAAAACACTAATCCTGATC
AAGTGCGATTTCGTTTT------CCTCTTTGCTGTGCGAAGATTTCATTTCAAGGTCAGGGGAGATAGACATGGCGGCGG
ACGGCGGGCTGAGGAGGCTGTTCGAGAAGCCTCTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGG---AAC
CGCGTCCACCCCAAGAGGC---------CGGTCGACCCGACATCCTTCACCGAGATATTCGGCGAGCTCCACTTCCACGA
GA---AGCAGCAGCAGCCGGACCACGTCGCCCGGGGCAACGTCCTGCCGGCGCCGCGTCCGCCACCTT------------
--CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTGGATCGACGCCGCCGAGAAGAGCAAGGACGACTCGT
CTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG------------------GTGAAGAGGAGCGCGAGCTTC
TCCATGAAGAAGAGCCCGTCCGCGTCGTCCCTGCTGCTCTGCACAGAGGGGCTCGGGTCCGAGAGCACCGTGGACG----
-----TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCGTTCCGCCGCCAGGTGGAGACACGCGACGACGCGGACGTGG
TCGACGC-------GAACCAGGAGGAGAAGGAGAACCAGCGGCCTCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAG
CGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTGCGGAGGGCAGGTTCGTGCTGGTGGAGGTTGTCATCC
CCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTCAGGCTGCAGTTCGCCGGCGCCACCGCACACGCGTAG
ACCAAGACAGGACAACACGATGTCTGTGACGAGACTGGAAACACTGGCTGGGTCATGCAAGAACACAGGACACAGGATAA
TCATCTTGCTGCGTCTACGACGCACATATTGTATCGTATATATATCGGGGTGTAAATTTGACTTTTTGAGAGTACTACT-
-ATCAACGAATTCATAATCTTTTTGGCATCATGACTCGTTGGATGGCATGCCGCCATTGTAATGTGAGAGTTAAAAAGCA
TGGCGACGC--ACAAAGGAATGCTTTTCTCTAAGAAAAAGGGGATGCTTTCCTTTCGGGATCGTTAAATCTGAAGTTTTT
CATTTCTTTTCTTAGGTCTTCCTTAGTTTGTAGAGTACATATGAATTTTCACTAGTGCAATTAACGTCATCGCA-TACGG
TTAAAATCCCCCATTGCTCACACGGTCACGAACATCGCG--CACGATGATGTGCGATAGGGGTACATCACACACGCTACA
AGATAAATAAGTGCGATAAGGTTCCAGAATAC-AGACAGTTTGGCAAAAGCAATCGTATACGATGATTGAGAGGGTGTTT
ATTTTCATGGATTTATTGGTTTAGGGACTTAAAAAAGTCTCTATAAATTCCATCTAAACCAAACAGGAGGGATTTATAGG
GACTTAAAGTGTGCATTTGGGACTTATAAAATAAGACTCTCAAGAAGAGACTTATAGGGACTTATAACTGTAACGTGGTC
TTTTAGTCCGTGTTAAGCCCCACAAACCAAACAGGTAGGGACTTTTTAGAGCATCTCCAGCCGTTGGCCTCCCAGGAGGG
GCTAAAAATCGCCCCCTGGGGGCGCACCGGCGCTAAACAGCGCACTGGGGGCGTGATGCCCCCCAGTCGCGGCGCCCACG
TTTTTTTTTGAAAAAGTCAAATACGGCGCAAACACGGCTCAATTTTATCGCAAACATCAGCGAGTTCGTTCAAATTTAAA
CATATTTTATAAAAAAAGAAAAAAACTAGCACGGGCTGCCCCCGCCGT
>chr5D_193
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--------------------------------CTACTGAGCCATGGCAATATGGCATCCATCCATCCATCCATATGTCCC
CTCGTCGTAACTATCAGAATCGGGTAGCTTTATTCCATTCTGCATTGTTTTCCTTCACTCTTTTCGTTATTC------CC
AGTGCACCGCCACCACTGGTGGCACCGTTGTCGACGTACAT-----------ACCTGAAATCCCTGGCTGAAATTTTCTC
ACTGCCACGCACGCGCACACCCACACTGAAAGCAGAAGCAGCTGGTGCCAAG----------------------------
---TTAGAGATTTCATGGTCCCAAAAGACAGATCCATAGATAGATATCTCACTATCTACCCATGTGAGCTGCAGCATTAC
AGCACCGTATTCTTATTTTACCTGCATATTTGCTCTCACTCTGCAGTGTTGGATCGGTCCACTTGTGTGAAAAGAAGGAA
ATATTCCGAATTCCATAGCCACAGAAAATGCCTAAATTTCTTATTTTGCAAAATGACAAGAAATGCCC-GTATCTTCTTG
GCCTCGCCTTTTCTCTGACTATATATGTGCCGGCCGTTCCTCGCAAGTGAGAAGAGCACAGGAAGAT---AGAAATCTCT
TCTGCAAATTCTTCAAAAACCTTGTTCGGATTGACGGCCCGTGCAGGTGTTCACTCAGGTGAGCGAAGTGATCATCTCTC
CATGGCATGCATGGTCACTTGGCATTCGTGCG-------TTTACCGAAAT-TTTTC---------------ATACTGATC
AAGTGCAATTTCGTTTTTAGCTTCCTGTTTGCAGTGCAAAGATTTCATTTCAAGGTCAGGGGAGATAGACATGGCGGCGG
ACGGCGGGTTGAGGAGGCTGTTCGAGAAGCCACTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGG---AAC
CGCGTCCACCCCAAGAGGC---------CCGTCGACCCGACATCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAAGA
GAAGCAGCAGCCGCAGCCGGACCACGTCGCCCGGGGCGGTGTCCTGCCGGCGCCGCGTCCGCCACCTT------------
--CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTGGATCGACGCCGCCGAGAAGAGCAAGGACGACTCGT
CTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG------------------GTGAAGAGGAGCGCGAGCTTC
TCCATGAAGAAGAGCCCGTCCGCGTCGTCCCTGCTGCTCTGCACAGAGGGGCTCGGGTCCGAGAGCACCGTGGACG----
-----TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCGTTCCGCCGCCAGGTGGAGACAGGCGACGACGCGTACGTCG
TCGACGC-------GAACCAGGAGGAGAAGGAGAACCAGCGGCCTCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAG
CGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTCCGGACGGCAGGTTCGTGCTGGTGGAGGTTGTCATCC
CCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTCAGGCTGCAGTTCGCTGGCGCCACCGCACACGCGTAG
ACCAAGACAGGACAGCACGATGTTT--------ACTGGAAACACTGGCTGGATCATGCAAGAACACAGGACA--GGATAA
TCATCTTGCTGCGTCTACGACGCACATATTGTATCG--TATATATCGGGGTGTGAATTTGTCTTTTTGAGAGTACTACT-
-ATCAACGAATTCAGAATCCTTTTCGCATCATGGCTCGTTGGATGGCATGCCGCCATTGTAATGTGAGAGTTAAAAAGCA
TGGCGACGC--ACAAAGGAATGCTTTTGTCTATGAAAAAGGGGATGCTTTCCTTTCCGGATCCTTAAATCTGAAGTTTTT
CTTTC---TTCTTAGGCCTTCTTTAGTTTGTA---TATATATGAATTTTCGCTGGTGCAATTAACGTCATCACATTACGG
TTAAAATCTCCTATTGCTCACACGGTCACGAAACGTCGTCCCACGATGATGTGCGATGGGGGTACATCACACACGCCACA
GGATAAATAAGTGCGATAAGGTTCCAGGATGTTAGATAGTTTGGCAAAAGCAATCGTATACGATGATTGA----------
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>chr5B_194
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---------------------------------TACTGAGCCATGGCAATATGGCATCCATCCATCCAT----ATGTCCC
CTCGTCGTAACTATCAGAATCGGGTAGCTTTATTCTATTCTGCATTGTTTTCCTTCACTCTTTTCGTTATTCTCAGTCCC
AGTGCACCGCCACCACTGGTGGCACCGTTGTCGACGTACCGGTCCTGGCATCACCTGAAATCCCTGGCTGAAAATTTCTC
ACTGCCACGCACGCACACACCCACACTGAAAGCAGAAGCAGCTGGTGCCAAG----------------------------
---TTACAGATTTCATGGTCCCAAAAGACAGATTCATAG----------CACTATCTACCCATGTGAGCTGCAGCATTAC
AGCACCGTATTCTTATTTTACCTGCATATTTGCTCTCACTCTGCAGTGTTGGATCGATCCACTTGCGTAAAAAGAAGGAA
ATATTCCAAATTCCATAGCCACAGAAAATGCCTCATTTTCTTATTTTGCAAAATGACAAGAAATGCCC-GTATCTTCTTG
GCCTCGCCTTTTCTCTGACTATATATGTGCTCGCCGTTCCTCGCAAGTGAGAAGAGCACAGGAAGAT---AGAAATCTCT
TCTGCAAATTCTTAA-----CTTGTCCGGATTGACAGCCCGTACAGGTGTTCACTCAGGTGAGCCAAGTGATCATCTCTC
CATGGCATGCATGGTCACTTAGCATTAGTGCAATTTCGTTTTAGCTGAAAATTTTCATACTGAAAACACTAATCCTGATC
AAGTGCGATTTCGTTTTAAGCTTCCTCTTTGCAGTGCAAAGATTTCATTTCAAGGTCAGGGGAGATAGACATGGCGGCGG
ACGGCGGGCTGAGGAGGCTGTTCGAGAAGCCTCTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGG---AAC
CGCGTCCACCCCAAGAGGC---------CCGTCGACCCGACATCCTTCACCGAGATCTTCGGTGAGCTCCACTTCCAAGA
GAAG------CAGCAGCCGGACCACGTCGCCCGGGGCAACGTCCTGCCGGCGCCGCGTCCGCCGCCTT------------
--CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTGGATCGACGCCGCCGAGAAGAGCAAGGACGACTCGT
CTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG------------------GTGAAGAGGAGCGCGAGCTTC
TCCATGAAGAAGAGTCCGTCGGCATCGTCCCTGCTGCTCTGCACAGAGGGGCTCGGGTCCGAGAGCACCGTGGACG----
-----TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCTTTCCGCCGCCAGGTGGAGACACGCGACGACGCGGACGTCG
TCGACGC-------GAACCAGGAGGAAAAGGAGAACCAGCGGCCTCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAG
CGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTGCGGACGGCAGGTTCGTGCTGGTGGAGGTTGTCATCC
CCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTCAGGCTGCAGTTCGCCGGCGCCACCGCACACGCGTAG
ACCAAGACAGGACAACACGATGTTTGTGACGAGACTGGAAACACTGGCTGGATCATGCAAGAACACAGGA-------TAA
TCATCTTGCTGCGTCTACGACGCACATATTGTATCG--TATATATCGGGGTGTAAATTTGACTTTTTGAGAGTACTACTA
CATCAACGAATTCAGAATCTACTGCGCATCATGGCTCGTTGGATGGCATGCCGCCATTATAATGTGGGAGTTAAAAAGCA
CGGCCACGTATACAAAGGAATGCTTTGTCTAAG--AAAAAGGGATGCTTTCCTTTCCGGATCCTTAAATCTGAAGTTTTT
CATTTCTTTTCTTAGGCCTTCTTTAGTTTGTA---TATAT--GAATTTTCACTAGTGCAATTAACGTCTTCGCATTACGG
TTAAAATCCCCTATTGCTCACACGGTCACGAACGC-CGTCCCACGATGATGTGCGATAGGGGTACATCACACACGCTA--
-----AATAAGTGCGATAAGGTTTCAGGATGC-AGATAGTTTGGCAAAAGCAATCATATACGATGAT-------------
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>chr4B_1006
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---------------------------------------------------------------------------GGGGG
ACGGCGCGCTGCGGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCCACGCTGCTGGAGGTGCTGTCGGCTTGCAACAAC
CACACCCACCACAAGAAGCTGCTGCCGGCCGTGGACCCGTCGTCCTTCACGGAGATCTTCGGTGAGCTCCACTTCCACGA
GAAGCCCGA--------------------------------------CGGCGCCGCCGCCCGACACGTCCTGCCACGGGT
GCCACTCCCTGATGCACGCGCTACGGCGGCGTCGTGGCTCGACATCGCTAGTCAGGCCGAGAAGAGCAAGGACGACTCGT
CGCTGGACGCGCTCCTCAG---GCCGAAGCCCGCTGGCGCCGCGGCCGCCCCCGGCGGCGTCAGGAGGAGCGCGAGCTTC
TGCCTGAAGAAGAGCTCGGCTTCG------CTGCTGCTGTGCACAGAGGGGCTCGGGTCCGAGAGCACGGTGGACTCGGA
CGACATGGTCAGGGATGACGGCGCCGACGCGGCCGCCGCCCTCCGAGGGAGGGAGAGGGAGGAAGCAACGCTGAGGGACG
CAGCTGCTGCGGCGGAACCAGGGCTGAGGGAGTCC----------CCGCCGTCGTTCCCGCCGCCGATACGATCGATCGG
---GCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGACGTTCCGCGCGGATGGGCGGTTCGTGCTGACGCAGGTGGTGATCC
CCGGGAAGGAGCTGCTGCAGGCGTCCCGCGAGGGCGGCCGGCTCAGGCTCCGGTTCGCC---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------
------------------------S-------------------------------------------------------
----------------------S---------------------------------------------------------
S---------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
-------S----------------------------------------S-------------------------------
-----------S--------------------------------------------------------S-----------
-----------------------------------S------------------------------SSSS----------
-------------------------------------S------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------S----S------------------------------------------
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-----------------------------S--------------------------S-----------------------
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------------------------------------------------------------------------------S-
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------------------------------------------------S-------------------------------
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-----------------------S---------------------------S--------------------SS------
------------------------------------SS------------------------------------------
--------------S---------S--------S----------------------------------------------
---------------------------S----S-----------------------S-----S-----------------
----------------S----S----------SSS--S------------------------------------------
-----------S---------------------SSSSSS-----------------------------------------
S--------------------------S--S-----S---------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_181
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-CCGGGCCCCTAAAATCTCAG-----------------------------------------------------------
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>reverse_2252
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-----------CATTGCTCACACGGTCACGA-------------------------------------------------
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