Multiple sequence alignment - TraesCS5A01G127300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G127300 chr5A 100.000 2474 0 0 1 2474 283112583 283110110 0.000000e+00 4569.0
1 TraesCS5A01G127300 chr5D 92.804 1348 40 12 760 2068 215256776 215255447 0.000000e+00 1899.0
2 TraesCS5A01G127300 chr5D 93.801 371 18 2 2105 2474 215255234 215254868 1.000000e-153 553.0
3 TraesCS5A01G127300 chr5D 88.530 279 23 9 457 729 215257046 215256771 1.830000e-86 329.0
4 TraesCS5A01G127300 chr5D 88.333 60 5 2 457 515 241957148 241957090 1.230000e-08 71.3
5 TraesCS5A01G127300 chr5D 87.037 54 7 0 462 515 375306071 375306124 7.390000e-06 62.1
6 TraesCS5A01G127300 chr5B 97.244 1016 23 2 744 1754 230782665 230781650 0.000000e+00 1716.0
7 TraesCS5A01G127300 chr5B 95.087 346 14 3 1 343 524770602 524770947 2.160000e-150 542.0
8 TraesCS5A01G127300 chr5B 86.441 295 27 2 2193 2474 230781277 230780983 6.640000e-81 311.0
9 TraesCS5A01G127300 chr5B 82.097 391 22 18 1772 2116 230781660 230781272 8.660000e-75 291.0
10 TraesCS5A01G127300 chr5B 87.898 157 17 2 521 675 570905892 570905736 1.510000e-42 183.0
11 TraesCS5A01G127300 chr5B 84.768 151 20 2 523 672 54041163 54041311 5.510000e-32 148.0
12 TraesCS5A01G127300 chr5B 82.424 165 27 2 509 672 711575686 711575849 2.560000e-30 143.0
13 TraesCS5A01G127300 chr5B 96.226 53 2 0 699 751 230783546 230783494 1.220000e-13 87.9
14 TraesCS5A01G127300 chr1B 95.376 346 13 3 1 343 52614311 52613966 4.650000e-152 547.0
15 TraesCS5A01G127300 chr1B 82.105 95 15 2 1381 1474 312249256 312249163 2.040000e-11 80.5
16 TraesCS5A01G127300 chr2B 93.931 346 17 4 1 343 621220533 621220189 1.010000e-143 520.0
17 TraesCS5A01G127300 chr2B 92.000 125 9 1 6 129 127182942 127182818 9.090000e-40 174.0
18 TraesCS5A01G127300 chr2B 92.857 42 3 0 474 515 221084016 221083975 7.390000e-06 62.1
19 TraesCS5A01G127300 chr2B 100.000 28 0 0 359 386 72938661 72938634 4.000000e-03 52.8
20 TraesCS5A01G127300 chr7B 93.064 346 21 3 1 343 71378265 71377920 1.020000e-138 503.0
21 TraesCS5A01G127300 chr7B 91.803 122 9 1 6 126 297212294 297212415 4.230000e-38 169.0
22 TraesCS5A01G127300 chr7B 89.600 125 12 1 6 129 379184056 379183932 9.160000e-35 158.0
23 TraesCS5A01G127300 chr7B 85.484 124 10 8 340 458 699039160 699039040 3.340000e-24 122.0
24 TraesCS5A01G127300 chr4D 92.754 345 11 8 1 343 417846747 417847079 1.030000e-133 486.0
25 TraesCS5A01G127300 chr4D 85.235 149 21 1 524 672 427269525 427269672 4.260000e-33 152.0
26 TraesCS5A01G127300 chr7D 92.486 346 12 8 1 343 603600991 603601325 1.330000e-132 483.0
27 TraesCS5A01G127300 chr7D 88.073 109 8 5 340 445 264960750 264960644 9.290000e-25 124.0
28 TraesCS5A01G127300 chr7D 86.441 59 8 0 457 515 141634985 141635043 5.710000e-07 65.8
29 TraesCS5A01G127300 chr3D 92.197 346 14 7 1 343 38413050 38413385 6.190000e-131 477.0
30 TraesCS5A01G127300 chr3B 92.169 332 20 6 1 327 766682892 766683222 4.820000e-127 464.0
31 TraesCS5A01G127300 chr3B 85.333 150 20 2 524 672 459247859 459248007 1.180000e-33 154.0
32 TraesCS5A01G127300 chr3B 85.841 113 10 5 340 449 88708751 88708860 5.590000e-22 115.0
33 TraesCS5A01G127300 chr1D 91.143 350 13 9 1 343 26190435 26190097 2.240000e-125 459.0
34 TraesCS5A01G127300 chr1D 87.037 108 11 3 340 445 393435639 393435533 4.320000e-23 119.0
35 TraesCS5A01G127300 chr1D 82.105 95 15 2 1381 1474 218409923 218409830 2.040000e-11 80.5
36 TraesCS5A01G127300 chr6A 91.200 125 10 1 6 129 159943408 159943284 4.230000e-38 169.0
37 TraesCS5A01G127300 chr6A 92.453 53 4 0 463 515 522408662 522408714 2.640000e-10 76.8
38 TraesCS5A01G127300 chr4A 86.275 153 17 4 509 660 59383324 59383473 1.970000e-36 163.0
39 TraesCS5A01G127300 chr6B 85.065 154 21 2 520 672 422321158 422321310 3.290000e-34 156.0
40 TraesCS5A01G127300 chr3A 83.333 162 23 4 510 669 149713945 149714104 1.980000e-31 147.0
41 TraesCS5A01G127300 chr3A 88.073 109 8 5 340 445 556336329 556336223 9.290000e-25 124.0
42 TraesCS5A01G127300 chr7A 82.524 103 15 3 344 445 165447101 165447001 1.220000e-13 87.9
43 TraesCS5A01G127300 chr2D 85.393 89 7 5 2112 2195 516650402 516650315 1.220000e-13 87.9
44 TraesCS5A01G127300 chr2D 92.857 42 3 0 474 515 161894229 161894188 7.390000e-06 62.1
45 TraesCS5A01G127300 chr2D 92.500 40 3 0 476 515 135317162 135317123 9.560000e-05 58.4
46 TraesCS5A01G127300 chr1A 81.053 95 16 2 1381 1474 280603692 280603599 9.490000e-10 75.0
47 TraesCS5A01G127300 chr2A 82.022 89 10 5 2112 2195 660503115 660503028 1.230000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G127300 chr5A 283110110 283112583 2473 True 4569.000 4569 100.000000 1 2474 1 chr5A.!!$R1 2473
1 TraesCS5A01G127300 chr5D 215254868 215257046 2178 True 927.000 1899 91.711667 457 2474 3 chr5D.!!$R2 2017
2 TraesCS5A01G127300 chr5B 230780983 230783546 2563 True 601.475 1716 90.502000 699 2474 4 chr5B.!!$R2 1775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.033366 GTGCACCCAAACCAATCCAC 59.967 55.0 5.22 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 2649 1.401905 GGCAGGCACTAATTTCTTCGG 59.598 52.381 0.0 0.0 36.02 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.859422 TTCTGTCGACCCCCTCCT 59.141 61.111 14.12 0.00 0.00 3.69
18 19 1.305046 TTCTGTCGACCCCCTCCTC 60.305 63.158 14.12 0.00 0.00 3.71
19 20 2.760385 CTGTCGACCCCCTCCTCC 60.760 72.222 14.12 0.00 0.00 4.30
20 21 3.273654 TGTCGACCCCCTCCTCCT 61.274 66.667 14.12 0.00 0.00 3.69
21 22 2.039137 GTCGACCCCCTCCTCCTT 59.961 66.667 3.51 0.00 0.00 3.36
22 23 2.059190 GTCGACCCCCTCCTCCTTC 61.059 68.421 3.51 0.00 0.00 3.46
23 24 2.764547 CGACCCCCTCCTCCTTCC 60.765 72.222 0.00 0.00 0.00 3.46
24 25 2.367107 GACCCCCTCCTCCTTCCC 60.367 72.222 0.00 0.00 0.00 3.97
25 26 2.882143 ACCCCCTCCTCCTTCCCT 60.882 66.667 0.00 0.00 0.00 4.20
26 27 2.040359 CCCCCTCCTCCTTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
27 28 2.444895 CCCCTCCTCCTTCCCTCG 60.445 72.222 0.00 0.00 0.00 4.63
28 29 2.364961 CCCTCCTCCTTCCCTCGT 59.635 66.667 0.00 0.00 0.00 4.18
29 30 2.060980 CCCTCCTCCTTCCCTCGTG 61.061 68.421 0.00 0.00 0.00 4.35
30 31 2.726351 CCTCCTCCTTCCCTCGTGC 61.726 68.421 0.00 0.00 0.00 5.34
31 32 3.068691 TCCTCCTTCCCTCGTGCG 61.069 66.667 0.00 0.00 0.00 5.34
32 33 4.821589 CCTCCTTCCCTCGTGCGC 62.822 72.222 0.00 0.00 0.00 6.09
33 34 4.821589 CTCCTTCCCTCGTGCGCC 62.822 72.222 4.18 0.00 0.00 6.53
41 42 4.724697 CTCGTGCGCCGCAACAAG 62.725 66.667 15.84 7.86 41.47 3.16
43 44 4.724697 CGTGCGCCGCAACAAGAG 62.725 66.667 15.84 0.00 41.47 2.85
44 45 4.389576 GTGCGCCGCAACAAGAGG 62.390 66.667 15.84 0.00 41.47 3.69
48 49 2.747855 GCCGCAACAAGAGGGGAG 60.748 66.667 0.00 0.00 41.25 4.30
49 50 2.747855 CCGCAACAAGAGGGGAGC 60.748 66.667 0.00 0.00 41.25 4.70
50 51 3.121030 CGCAACAAGAGGGGAGCG 61.121 66.667 0.00 0.00 39.17 5.03
51 52 2.032681 GCAACAAGAGGGGAGCGT 59.967 61.111 0.00 0.00 0.00 5.07
52 53 2.035442 GCAACAAGAGGGGAGCGTC 61.035 63.158 0.00 0.00 0.00 5.19
53 54 1.738099 CAACAAGAGGGGAGCGTCG 60.738 63.158 0.00 0.00 0.00 5.12
54 55 3.591254 AACAAGAGGGGAGCGTCGC 62.591 63.158 9.80 9.80 0.00 5.19
66 67 4.933064 CGTCGCGCCCATCTCCTC 62.933 72.222 0.00 0.00 0.00 3.71
67 68 3.532155 GTCGCGCCCATCTCCTCT 61.532 66.667 0.00 0.00 0.00 3.69
68 69 2.759973 TCGCGCCCATCTCCTCTT 60.760 61.111 0.00 0.00 0.00 2.85
69 70 2.279784 CGCGCCCATCTCCTCTTC 60.280 66.667 0.00 0.00 0.00 2.87
70 71 2.903357 GCGCCCATCTCCTCTTCA 59.097 61.111 0.00 0.00 0.00 3.02
71 72 1.449353 GCGCCCATCTCCTCTTCAT 59.551 57.895 0.00 0.00 0.00 2.57
72 73 0.179034 GCGCCCATCTCCTCTTCATT 60.179 55.000 0.00 0.00 0.00 2.57
73 74 1.590932 CGCCCATCTCCTCTTCATTG 58.409 55.000 0.00 0.00 0.00 2.82
74 75 1.139654 CGCCCATCTCCTCTTCATTGA 59.860 52.381 0.00 0.00 0.00 2.57
75 76 2.806019 CGCCCATCTCCTCTTCATTGAG 60.806 54.545 0.00 0.00 0.00 3.02
76 77 2.848691 CCCATCTCCTCTTCATTGAGC 58.151 52.381 0.00 0.00 33.02 4.26
77 78 2.486907 CCCATCTCCTCTTCATTGAGCC 60.487 54.545 0.00 0.00 33.02 4.70
78 79 2.481854 CATCTCCTCTTCATTGAGCCG 58.518 52.381 0.00 0.00 33.02 5.52
79 80 0.176680 TCTCCTCTTCATTGAGCCGC 59.823 55.000 0.00 0.00 33.02 6.53
80 81 0.813210 CTCCTCTTCATTGAGCCGCC 60.813 60.000 0.00 0.00 33.02 6.13
81 82 1.222936 CCTCTTCATTGAGCCGCCT 59.777 57.895 0.00 0.00 33.02 5.52
82 83 0.813210 CCTCTTCATTGAGCCGCCTC 60.813 60.000 0.00 0.00 38.62 4.70
83 84 0.813210 CTCTTCATTGAGCCGCCTCC 60.813 60.000 0.00 0.00 37.29 4.30
84 85 1.222936 CTTCATTGAGCCGCCTCCT 59.777 57.895 0.00 0.00 37.29 3.69
85 86 1.078214 TTCATTGAGCCGCCTCCTG 60.078 57.895 0.00 0.00 37.29 3.86
86 87 3.207669 CATTGAGCCGCCTCCTGC 61.208 66.667 0.00 0.00 37.29 4.85
87 88 4.496336 ATTGAGCCGCCTCCTGCC 62.496 66.667 0.00 0.00 37.29 4.85
109 110 3.187414 GCAGAGAGCTCGCACTGC 61.187 66.667 30.91 30.91 46.25 4.40
145 146 4.263572 CTTGACCCGGTGCACCCA 62.264 66.667 29.95 18.78 0.00 4.51
146 147 3.783362 CTTGACCCGGTGCACCCAA 62.783 63.158 29.95 24.17 0.00 4.12
147 148 3.360423 TTGACCCGGTGCACCCAAA 62.360 57.895 29.95 13.87 0.00 3.28
148 149 3.292159 GACCCGGTGCACCCAAAC 61.292 66.667 29.95 15.15 0.00 2.93
149 150 4.906537 ACCCGGTGCACCCAAACC 62.907 66.667 29.95 4.29 0.00 3.27
150 151 4.904590 CCCGGTGCACCCAAACCA 62.905 66.667 29.95 0.00 36.14 3.67
151 152 2.835431 CCGGTGCACCCAAACCAA 60.835 61.111 29.95 0.00 36.14 3.67
152 153 2.206536 CCGGTGCACCCAAACCAAT 61.207 57.895 29.95 0.00 36.14 3.16
153 154 1.288752 CGGTGCACCCAAACCAATC 59.711 57.895 29.95 1.09 36.14 2.67
154 155 1.671166 GGTGCACCCAAACCAATCC 59.329 57.895 26.31 0.00 36.41 3.01
155 156 1.118356 GGTGCACCCAAACCAATCCA 61.118 55.000 26.31 0.00 36.41 3.41
156 157 0.033366 GTGCACCCAAACCAATCCAC 59.967 55.000 5.22 0.00 0.00 4.02
157 158 0.397675 TGCACCCAAACCAATCCACA 60.398 50.000 0.00 0.00 0.00 4.17
158 159 0.033366 GCACCCAAACCAATCCACAC 59.967 55.000 0.00 0.00 0.00 3.82
159 160 1.407936 CACCCAAACCAATCCACACA 58.592 50.000 0.00 0.00 0.00 3.72
160 161 1.340889 CACCCAAACCAATCCACACAG 59.659 52.381 0.00 0.00 0.00 3.66
161 162 0.318120 CCCAAACCAATCCACACAGC 59.682 55.000 0.00 0.00 0.00 4.40
162 163 1.039068 CCAAACCAATCCACACAGCA 58.961 50.000 0.00 0.00 0.00 4.41
163 164 1.000060 CCAAACCAATCCACACAGCAG 60.000 52.381 0.00 0.00 0.00 4.24
164 165 1.000060 CAAACCAATCCACACAGCAGG 60.000 52.381 0.00 0.00 0.00 4.85
165 166 1.181098 AACCAATCCACACAGCAGGC 61.181 55.000 0.00 0.00 0.00 4.85
166 167 1.604308 CCAATCCACACAGCAGGCA 60.604 57.895 0.00 0.00 0.00 4.75
167 168 1.592400 CCAATCCACACAGCAGGCAG 61.592 60.000 0.00 0.00 0.00 4.85
168 169 1.975407 AATCCACACAGCAGGCAGC 60.975 57.895 0.00 0.00 46.19 5.25
178 179 4.463879 CAGGCAGCCACCGAGGAG 62.464 72.222 15.80 0.00 41.22 3.69
195 196 4.247380 GCCCGAGCTCCTCCCATG 62.247 72.222 8.47 0.00 35.50 3.66
196 197 3.554342 CCCGAGCTCCTCCCATGG 61.554 72.222 8.47 4.14 0.00 3.66
197 198 2.444706 CCGAGCTCCTCCCATGGA 60.445 66.667 15.22 0.00 34.52 3.41
198 199 2.801631 CCGAGCTCCTCCCATGGAC 61.802 68.421 15.22 0.00 31.94 4.02
199 200 2.801631 CGAGCTCCTCCCATGGACC 61.802 68.421 15.22 0.00 31.94 4.46
200 201 2.367512 AGCTCCTCCCATGGACCC 60.368 66.667 15.22 0.00 31.94 4.46
201 202 3.493303 GCTCCTCCCATGGACCCC 61.493 72.222 15.22 0.00 31.94 4.95
202 203 2.042762 CTCCTCCCATGGACCCCA 59.957 66.667 15.22 0.00 38.19 4.96
203 204 2.042762 TCCTCCCATGGACCCCAG 59.957 66.667 15.22 0.46 36.75 4.45
204 205 3.813724 CCTCCCATGGACCCCAGC 61.814 72.222 15.22 0.00 36.75 4.85
205 206 2.693864 CTCCCATGGACCCCAGCT 60.694 66.667 15.22 0.00 36.75 4.24
206 207 3.016971 TCCCATGGACCCCAGCTG 61.017 66.667 15.22 6.78 36.75 4.24
207 208 4.828296 CCCATGGACCCCAGCTGC 62.828 72.222 15.22 0.00 36.75 5.25
208 209 4.051167 CCATGGACCCCAGCTGCA 62.051 66.667 5.56 0.00 36.75 4.41
209 210 2.439701 CATGGACCCCAGCTGCAG 60.440 66.667 10.11 10.11 36.75 4.41
210 211 4.437587 ATGGACCCCAGCTGCAGC 62.438 66.667 31.53 31.53 36.75 5.25
230 231 3.866582 GCTATGAGCGCCACCCCT 61.867 66.667 2.29 0.00 0.00 4.79
231 232 2.423446 CTATGAGCGCCACCCCTC 59.577 66.667 2.29 0.00 0.00 4.30
232 233 3.161450 TATGAGCGCCACCCCTCC 61.161 66.667 2.29 0.00 0.00 4.30
240 241 3.700350 CCACCCCTCCCCTCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
241 242 2.366167 CACCCCTCCCCTCCTCTG 60.366 72.222 0.00 0.00 0.00 3.35
242 243 2.876858 ACCCCTCCCCTCCTCTGT 60.877 66.667 0.00 0.00 0.00 3.41
243 244 2.456840 CCCCTCCCCTCCTCTGTT 59.543 66.667 0.00 0.00 0.00 3.16
244 245 1.229984 CCCCTCCCCTCCTCTGTTT 60.230 63.158 0.00 0.00 0.00 2.83
245 246 0.846870 CCCCTCCCCTCCTCTGTTTT 60.847 60.000 0.00 0.00 0.00 2.43
246 247 1.076438 CCCTCCCCTCCTCTGTTTTT 58.924 55.000 0.00 0.00 0.00 1.94
247 248 1.004862 CCCTCCCCTCCTCTGTTTTTC 59.995 57.143 0.00 0.00 0.00 2.29
248 249 1.004862 CCTCCCCTCCTCTGTTTTTCC 59.995 57.143 0.00 0.00 0.00 3.13
249 250 1.988846 CTCCCCTCCTCTGTTTTTCCT 59.011 52.381 0.00 0.00 0.00 3.36
250 251 1.985895 TCCCCTCCTCTGTTTTTCCTC 59.014 52.381 0.00 0.00 0.00 3.71
251 252 1.988846 CCCCTCCTCTGTTTTTCCTCT 59.011 52.381 0.00 0.00 0.00 3.69
252 253 3.181399 TCCCCTCCTCTGTTTTTCCTCTA 60.181 47.826 0.00 0.00 0.00 2.43
253 254 3.587506 CCCCTCCTCTGTTTTTCCTCTAA 59.412 47.826 0.00 0.00 0.00 2.10
254 255 4.565861 CCCCTCCTCTGTTTTTCCTCTAAC 60.566 50.000 0.00 0.00 0.00 2.34
255 256 4.246458 CCTCCTCTGTTTTTCCTCTAACG 58.754 47.826 0.00 0.00 0.00 3.18
256 257 4.246458 CTCCTCTGTTTTTCCTCTAACGG 58.754 47.826 0.00 0.00 33.02 4.44
257 258 3.899360 TCCTCTGTTTTTCCTCTAACGGA 59.101 43.478 0.00 0.00 37.32 4.69
291 292 5.499139 TTTGGATCGTAATCAATGAAGCC 57.501 39.130 0.00 0.00 33.21 4.35
292 293 4.422073 TGGATCGTAATCAATGAAGCCT 57.578 40.909 0.00 0.00 33.21 4.58
293 294 4.129380 TGGATCGTAATCAATGAAGCCTG 58.871 43.478 0.00 0.00 33.21 4.85
294 295 3.499918 GGATCGTAATCAATGAAGCCTGG 59.500 47.826 0.00 0.00 33.21 4.45
295 296 2.917933 TCGTAATCAATGAAGCCTGGG 58.082 47.619 0.00 0.00 0.00 4.45
296 297 2.503765 TCGTAATCAATGAAGCCTGGGA 59.496 45.455 0.00 0.00 0.00 4.37
297 298 2.874701 CGTAATCAATGAAGCCTGGGAG 59.125 50.000 0.00 0.00 0.00 4.30
298 299 2.449137 AATCAATGAAGCCTGGGAGG 57.551 50.000 0.00 0.00 38.80 4.30
299 300 1.600058 ATCAATGAAGCCTGGGAGGA 58.400 50.000 0.00 0.00 37.67 3.71
300 301 1.371467 TCAATGAAGCCTGGGAGGAA 58.629 50.000 0.00 0.00 37.67 3.36
301 302 1.283029 TCAATGAAGCCTGGGAGGAAG 59.717 52.381 0.00 0.00 37.67 3.46
302 303 0.033699 AATGAAGCCTGGGAGGAAGC 60.034 55.000 0.00 0.00 37.67 3.86
303 304 1.931007 ATGAAGCCTGGGAGGAAGCC 61.931 60.000 0.00 0.00 37.67 4.35
304 305 2.204213 AAGCCTGGGAGGAAGCCT 60.204 61.111 0.00 0.00 37.67 4.58
305 306 0.983378 GAAGCCTGGGAGGAAGCCTA 60.983 60.000 0.00 0.00 37.67 3.93
306 307 0.327964 AAGCCTGGGAGGAAGCCTAT 60.328 55.000 0.00 0.00 37.67 2.57
307 308 0.766288 AGCCTGGGAGGAAGCCTATC 60.766 60.000 0.00 0.00 37.67 2.08
308 309 1.056700 GCCTGGGAGGAAGCCTATCA 61.057 60.000 0.00 0.00 37.67 2.15
309 310 0.761802 CCTGGGAGGAAGCCTATCAC 59.238 60.000 0.00 0.00 37.67 3.06
310 311 0.761802 CTGGGAGGAAGCCTATCACC 59.238 60.000 0.00 0.00 31.76 4.02
311 312 0.044092 TGGGAGGAAGCCTATCACCA 59.956 55.000 0.00 0.00 31.76 4.17
312 313 1.345422 TGGGAGGAAGCCTATCACCAT 60.345 52.381 0.00 0.00 31.76 3.55
313 314 2.090210 TGGGAGGAAGCCTATCACCATA 60.090 50.000 0.00 0.00 31.76 2.74
314 315 3.185455 GGGAGGAAGCCTATCACCATAT 58.815 50.000 0.00 0.00 31.76 1.78
315 316 3.198853 GGGAGGAAGCCTATCACCATATC 59.801 52.174 0.00 0.00 31.76 1.63
316 317 3.118956 GGAGGAAGCCTATCACCATATCG 60.119 52.174 0.00 0.00 31.76 2.92
317 318 2.834549 AGGAAGCCTATCACCATATCGG 59.165 50.000 0.00 0.00 33.89 4.18
318 319 2.622436 GAAGCCTATCACCATATCGGC 58.378 52.381 0.00 0.00 39.03 5.54
319 320 0.905357 AGCCTATCACCATATCGGCC 59.095 55.000 0.00 0.00 39.03 6.13
320 321 0.107654 GCCTATCACCATATCGGCCC 60.108 60.000 0.00 0.00 39.03 5.80
321 322 1.275666 CCTATCACCATATCGGCCCA 58.724 55.000 0.00 0.00 39.03 5.36
322 323 1.208052 CCTATCACCATATCGGCCCAG 59.792 57.143 0.00 0.00 39.03 4.45
323 324 1.902508 CTATCACCATATCGGCCCAGT 59.097 52.381 0.00 0.00 39.03 4.00
324 325 2.024176 ATCACCATATCGGCCCAGTA 57.976 50.000 0.00 0.00 39.03 2.74
325 326 2.024176 TCACCATATCGGCCCAGTAT 57.976 50.000 0.00 0.00 39.03 2.12
326 327 1.623311 TCACCATATCGGCCCAGTATG 59.377 52.381 0.00 3.43 39.03 2.39
337 338 4.758692 CAGTATGGCTGGCGTAGG 57.241 61.111 3.07 0.00 41.42 3.18
338 339 2.124293 CAGTATGGCTGGCGTAGGA 58.876 57.895 3.07 0.00 41.42 2.94
339 340 0.464036 CAGTATGGCTGGCGTAGGAA 59.536 55.000 3.07 0.00 41.42 3.36
340 341 0.753262 AGTATGGCTGGCGTAGGAAG 59.247 55.000 3.07 0.00 0.00 3.46
341 342 0.464452 GTATGGCTGGCGTAGGAAGT 59.536 55.000 3.07 0.00 0.00 3.01
342 343 1.684983 GTATGGCTGGCGTAGGAAGTA 59.315 52.381 3.07 0.00 0.00 2.24
343 344 0.464452 ATGGCTGGCGTAGGAAGTAC 59.536 55.000 0.00 0.00 0.00 2.73
344 345 0.901114 TGGCTGGCGTAGGAAGTACA 60.901 55.000 0.00 0.00 0.00 2.90
345 346 0.459759 GGCTGGCGTAGGAAGTACAC 60.460 60.000 0.00 0.00 0.00 2.90
346 347 0.459759 GCTGGCGTAGGAAGTACACC 60.460 60.000 0.00 0.00 34.75 4.16
347 348 1.183549 CTGGCGTAGGAAGTACACCT 58.816 55.000 14.40 14.40 35.17 4.00
348 349 1.134560 CTGGCGTAGGAAGTACACCTC 59.865 57.143 13.57 6.68 35.17 3.85
349 350 0.100146 GGCGTAGGAAGTACACCTCG 59.900 60.000 13.57 15.87 38.76 4.63
350 351 0.525029 GCGTAGGAAGTACACCTCGC 60.525 60.000 23.77 23.77 41.96 5.03
351 352 0.247974 CGTAGGAAGTACACCTCGCG 60.248 60.000 13.57 0.00 38.76 5.87
352 353 0.807496 GTAGGAAGTACACCTCGCGT 59.193 55.000 5.77 0.00 38.76 6.01
353 354 2.009774 GTAGGAAGTACACCTCGCGTA 58.990 52.381 5.77 0.00 38.76 4.42
354 355 1.760192 AGGAAGTACACCTCGCGTAT 58.240 50.000 5.77 0.00 31.43 3.06
355 356 2.923121 AGGAAGTACACCTCGCGTATA 58.077 47.619 5.77 0.00 31.43 1.47
356 357 3.484407 AGGAAGTACACCTCGCGTATAT 58.516 45.455 5.77 0.00 31.43 0.86
357 358 4.645535 AGGAAGTACACCTCGCGTATATA 58.354 43.478 5.77 0.00 31.43 0.86
358 359 5.251764 AGGAAGTACACCTCGCGTATATAT 58.748 41.667 5.77 0.00 31.43 0.86
359 360 5.709164 AGGAAGTACACCTCGCGTATATATT 59.291 40.000 5.77 0.00 31.43 1.28
360 361 6.208204 AGGAAGTACACCTCGCGTATATATTT 59.792 38.462 5.77 0.00 31.43 1.40
361 362 6.865205 GGAAGTACACCTCGCGTATATATTTT 59.135 38.462 5.77 0.00 0.00 1.82
362 363 8.023128 GGAAGTACACCTCGCGTATATATTTTA 58.977 37.037 5.77 0.00 0.00 1.52
363 364 9.398170 GAAGTACACCTCGCGTATATATTTTAA 57.602 33.333 5.77 0.00 0.00 1.52
364 365 9.748708 AAGTACACCTCGCGTATATATTTTAAA 57.251 29.630 5.77 0.00 0.00 1.52
365 366 9.918630 AGTACACCTCGCGTATATATTTTAAAT 57.081 29.630 5.77 0.00 0.00 1.40
397 398 9.825972 TTGAAAGCGTAAATTTATGAGAAGAAG 57.174 29.630 19.46 0.00 0.00 2.85
398 399 7.962918 TGAAAGCGTAAATTTATGAGAAGAAGC 59.037 33.333 19.46 2.84 0.00 3.86
399 400 6.037423 AGCGTAAATTTATGAGAAGAAGCG 57.963 37.500 19.46 7.25 0.00 4.68
400 401 5.581085 AGCGTAAATTTATGAGAAGAAGCGT 59.419 36.000 19.46 0.00 0.00 5.07
401 402 6.755141 AGCGTAAATTTATGAGAAGAAGCGTA 59.245 34.615 19.46 0.00 0.00 4.42
402 403 7.438459 AGCGTAAATTTATGAGAAGAAGCGTAT 59.562 33.333 19.46 0.00 0.00 3.06
403 404 8.062448 GCGTAAATTTATGAGAAGAAGCGTATT 58.938 33.333 19.46 0.00 0.00 1.89
404 405 9.916397 CGTAAATTTATGAGAAGAAGCGTATTT 57.084 29.630 11.35 0.00 0.00 1.40
407 408 9.559958 AAATTTATGAGAAGAAGCGTATTTGTG 57.440 29.630 0.00 0.00 0.00 3.33
408 409 7.899178 TTTATGAGAAGAAGCGTATTTGTGA 57.101 32.000 0.00 0.00 0.00 3.58
409 410 8.492673 TTTATGAGAAGAAGCGTATTTGTGAT 57.507 30.769 0.00 0.00 0.00 3.06
410 411 5.784750 TGAGAAGAAGCGTATTTGTGATG 57.215 39.130 0.00 0.00 0.00 3.07
411 412 5.478407 TGAGAAGAAGCGTATTTGTGATGA 58.522 37.500 0.00 0.00 0.00 2.92
412 413 6.108687 TGAGAAGAAGCGTATTTGTGATGAT 58.891 36.000 0.00 0.00 0.00 2.45
413 414 6.036408 TGAGAAGAAGCGTATTTGTGATGATG 59.964 38.462 0.00 0.00 0.00 3.07
414 415 6.108687 AGAAGAAGCGTATTTGTGATGATGA 58.891 36.000 0.00 0.00 0.00 2.92
415 416 6.595326 AGAAGAAGCGTATTTGTGATGATGAA 59.405 34.615 0.00 0.00 0.00 2.57
416 417 6.111768 AGAAGCGTATTTGTGATGATGAAC 57.888 37.500 0.00 0.00 0.00 3.18
417 418 4.882671 AGCGTATTTGTGATGATGAACC 57.117 40.909 0.00 0.00 0.00 3.62
418 419 3.627577 AGCGTATTTGTGATGATGAACCC 59.372 43.478 0.00 0.00 0.00 4.11
419 420 3.376859 GCGTATTTGTGATGATGAACCCA 59.623 43.478 0.00 0.00 0.00 4.51
420 421 4.730613 GCGTATTTGTGATGATGAACCCAC 60.731 45.833 0.00 0.00 0.00 4.61
421 422 4.394610 CGTATTTGTGATGATGAACCCACA 59.605 41.667 0.00 0.00 37.70 4.17
422 423 5.447683 CGTATTTGTGATGATGAACCCACAG 60.448 44.000 0.00 0.00 40.14 3.66
423 424 3.786368 TTGTGATGATGAACCCACAGA 57.214 42.857 0.00 0.00 40.14 3.41
424 425 3.339253 TGTGATGATGAACCCACAGAG 57.661 47.619 0.00 0.00 34.96 3.35
425 426 2.639347 TGTGATGATGAACCCACAGAGT 59.361 45.455 0.00 0.00 34.96 3.24
426 427 3.265791 GTGATGATGAACCCACAGAGTC 58.734 50.000 0.00 0.00 0.00 3.36
427 428 2.905736 TGATGATGAACCCACAGAGTCA 59.094 45.455 0.00 0.00 0.00 3.41
428 429 3.327464 TGATGATGAACCCACAGAGTCAA 59.673 43.478 0.00 0.00 0.00 3.18
429 430 4.019051 TGATGATGAACCCACAGAGTCAAT 60.019 41.667 0.00 0.00 0.00 2.57
430 431 3.942829 TGATGAACCCACAGAGTCAATC 58.057 45.455 0.00 0.00 0.00 2.67
431 432 2.859165 TGAACCCACAGAGTCAATCC 57.141 50.000 0.00 0.00 0.00 3.01
432 433 1.001974 TGAACCCACAGAGTCAATCCG 59.998 52.381 0.00 0.00 0.00 4.18
433 434 0.321653 AACCCACAGAGTCAATCCGC 60.322 55.000 0.00 0.00 0.00 5.54
434 435 1.811266 CCCACAGAGTCAATCCGCG 60.811 63.158 0.00 0.00 0.00 6.46
435 436 2.456119 CCACAGAGTCAATCCGCGC 61.456 63.158 0.00 0.00 0.00 6.86
436 437 1.446792 CACAGAGTCAATCCGCGCT 60.447 57.895 5.56 0.00 0.00 5.92
437 438 1.016130 CACAGAGTCAATCCGCGCTT 61.016 55.000 5.56 0.00 0.00 4.68
438 439 0.320771 ACAGAGTCAATCCGCGCTTT 60.321 50.000 5.56 0.00 0.00 3.51
439 440 1.067142 ACAGAGTCAATCCGCGCTTTA 60.067 47.619 5.56 0.00 0.00 1.85
440 441 2.205074 CAGAGTCAATCCGCGCTTTAT 58.795 47.619 5.56 0.00 0.00 1.40
441 442 2.609459 CAGAGTCAATCCGCGCTTTATT 59.391 45.455 5.56 0.00 0.00 1.40
442 443 3.802139 CAGAGTCAATCCGCGCTTTATTA 59.198 43.478 5.56 0.00 0.00 0.98
443 444 4.449068 CAGAGTCAATCCGCGCTTTATTAT 59.551 41.667 5.56 0.00 0.00 1.28
444 445 5.050091 CAGAGTCAATCCGCGCTTTATTATT 60.050 40.000 5.56 0.00 0.00 1.40
445 446 5.050091 AGAGTCAATCCGCGCTTTATTATTG 60.050 40.000 5.56 6.39 0.00 1.90
446 447 4.574828 AGTCAATCCGCGCTTTATTATTGT 59.425 37.500 5.56 0.00 0.00 2.71
447 448 5.065988 AGTCAATCCGCGCTTTATTATTGTT 59.934 36.000 5.56 0.00 0.00 2.83
448 449 6.259167 AGTCAATCCGCGCTTTATTATTGTTA 59.741 34.615 5.56 0.00 0.00 2.41
449 450 6.908284 GTCAATCCGCGCTTTATTATTGTTAA 59.092 34.615 5.56 0.00 0.00 2.01
450 451 7.111593 GTCAATCCGCGCTTTATTATTGTTAAG 59.888 37.037 5.56 0.00 0.00 1.85
451 452 5.412526 TCCGCGCTTTATTATTGTTAAGG 57.587 39.130 5.56 0.00 0.00 2.69
452 453 5.117584 TCCGCGCTTTATTATTGTTAAGGA 58.882 37.500 5.56 0.00 0.00 3.36
453 454 5.585445 TCCGCGCTTTATTATTGTTAAGGAA 59.415 36.000 5.56 0.00 0.00 3.36
454 455 6.093771 TCCGCGCTTTATTATTGTTAAGGAAA 59.906 34.615 5.56 0.00 0.00 3.13
455 456 6.413818 CCGCGCTTTATTATTGTTAAGGAAAG 59.586 38.462 5.56 0.00 32.48 2.62
517 519 8.989131 ACACACTAAAACATGTCTATATACCCT 58.011 33.333 0.00 0.00 0.00 4.34
525 527 9.975218 AAACATGTCTATATACCCTTTCTGTTT 57.025 29.630 0.00 0.00 0.00 2.83
726 730 4.819105 TGAACAATAGGGAGTACCACTG 57.181 45.455 0.00 0.00 43.89 3.66
727 731 4.164981 TGAACAATAGGGAGTACCACTGT 58.835 43.478 0.00 0.00 43.89 3.55
728 732 4.595781 TGAACAATAGGGAGTACCACTGTT 59.404 41.667 5.66 5.66 43.89 3.16
729 733 5.781306 TGAACAATAGGGAGTACCACTGTTA 59.219 40.000 5.91 0.00 43.89 2.41
730 734 6.442564 TGAACAATAGGGAGTACCACTGTTAT 59.557 38.462 5.91 0.00 43.89 1.89
731 735 6.235231 ACAATAGGGAGTACCACTGTTATG 57.765 41.667 0.00 0.00 43.89 1.90
732 736 5.724854 ACAATAGGGAGTACCACTGTTATGT 59.275 40.000 0.00 0.00 43.89 2.29
733 737 5.871396 ATAGGGAGTACCACTGTTATGTG 57.129 43.478 0.00 0.00 43.89 3.21
734 738 3.517612 AGGGAGTACCACTGTTATGTGT 58.482 45.455 0.00 0.00 43.89 3.72
735 739 3.514309 AGGGAGTACCACTGTTATGTGTC 59.486 47.826 0.00 0.00 43.89 3.67
736 740 3.369157 GGGAGTACCACTGTTATGTGTCC 60.369 52.174 0.00 0.00 39.85 4.02
737 741 3.514309 GGAGTACCACTGTTATGTGTCCT 59.486 47.826 0.00 0.00 36.30 3.85
738 742 4.708421 GGAGTACCACTGTTATGTGTCCTA 59.292 45.833 0.00 0.00 36.30 2.94
739 743 5.363005 GGAGTACCACTGTTATGTGTCCTAT 59.637 44.000 0.00 0.00 36.30 2.57
740 744 6.222038 AGTACCACTGTTATGTGTCCTATG 57.778 41.667 0.00 0.00 36.30 2.23
741 745 5.955959 AGTACCACTGTTATGTGTCCTATGA 59.044 40.000 0.00 0.00 36.30 2.15
742 746 5.755409 ACCACTGTTATGTGTCCTATGAA 57.245 39.130 0.00 0.00 36.30 2.57
743 747 6.313519 ACCACTGTTATGTGTCCTATGAAT 57.686 37.500 0.00 0.00 36.30 2.57
744 748 7.432148 ACCACTGTTATGTGTCCTATGAATA 57.568 36.000 0.00 0.00 36.30 1.75
745 749 7.857456 ACCACTGTTATGTGTCCTATGAATAA 58.143 34.615 0.00 0.00 36.30 1.40
746 750 8.325787 ACCACTGTTATGTGTCCTATGAATAAA 58.674 33.333 0.00 0.00 36.30 1.40
747 751 8.830580 CCACTGTTATGTGTCCTATGAATAAAG 58.169 37.037 0.00 0.00 36.30 1.85
748 752 9.599866 CACTGTTATGTGTCCTATGAATAAAGA 57.400 33.333 0.00 0.00 33.61 2.52
798 1673 5.163447 TGGAGAGAGGGTTAACGATGTATTG 60.163 44.000 0.00 0.00 0.00 1.90
805 1680 6.942976 AGGGTTAACGATGTATTGAGAAGAA 58.057 36.000 0.00 0.00 0.00 2.52
816 1691 6.779860 TGTATTGAGAAGAAAAGTAAGGGCT 58.220 36.000 0.00 0.00 0.00 5.19
1550 2429 2.303043 CCCCCGTTAGTTCCATCCA 58.697 57.895 0.00 0.00 0.00 3.41
1719 2599 6.650390 GGCCATTATGTTTGTTCAATCAGTTT 59.350 34.615 0.00 0.00 0.00 2.66
1742 2622 4.572795 TGTCTGCTGTGTTTAACGATGAAA 59.427 37.500 0.00 0.00 0.00 2.69
1759 2639 8.777865 ACGATGAAATGAAAATCTAGACTTGA 57.222 30.769 0.00 0.00 0.00 3.02
1760 2640 9.388506 ACGATGAAATGAAAATCTAGACTTGAT 57.611 29.630 0.00 0.00 0.00 2.57
1764 2644 9.519191 TGAAATGAAAATCTAGACTTGATTCCA 57.481 29.630 11.75 12.48 33.54 3.53
1767 2647 7.870509 TGAAAATCTAGACTTGATTCCATGG 57.129 36.000 4.97 4.97 33.54 3.66
1768 2648 7.632861 TGAAAATCTAGACTTGATTCCATGGA 58.367 34.615 11.44 11.44 33.54 3.41
1769 2649 7.554118 TGAAAATCTAGACTTGATTCCATGGAC 59.446 37.037 15.91 4.42 33.54 4.02
1770 2650 5.559148 ATCTAGACTTGATTCCATGGACC 57.441 43.478 15.91 10.21 0.00 4.46
1771 2651 2.698855 AGACTTGATTCCATGGACCG 57.301 50.000 15.91 3.70 0.00 4.79
1772 2652 2.187958 AGACTTGATTCCATGGACCGA 58.812 47.619 15.91 8.46 0.00 4.69
1773 2653 2.571653 AGACTTGATTCCATGGACCGAA 59.428 45.455 15.91 6.14 0.00 4.30
1788 2668 2.084546 ACCGAAGAAATTAGTGCCTGC 58.915 47.619 0.00 0.00 0.00 4.85
1888 2779 3.467374 TGAAATTCTTTGGTGGTTGCC 57.533 42.857 0.00 0.00 0.00 4.52
1920 2811 3.129988 CCAGAGGATTGTTGAATTGGCTC 59.870 47.826 0.00 0.00 0.00 4.70
1952 2857 5.422331 ACAGGCTTGTGCTTAGTCTATTCTA 59.578 40.000 0.00 0.00 39.59 2.10
1957 2862 8.145122 GGCTTGTGCTTAGTCTATTCTAGTTAT 58.855 37.037 0.00 0.00 39.59 1.89
1958 2877 8.973378 GCTTGTGCTTAGTCTATTCTAGTTATG 58.027 37.037 0.00 0.00 36.03 1.90
2014 2933 2.096013 GGTGGAGAAAATTCAGCGCTAC 59.904 50.000 10.99 0.00 0.00 3.58
2057 2986 4.322804 CGTTGTAGTTCTATGTCGTGGAAC 59.677 45.833 12.17 12.17 45.64 3.62
2124 3229 2.305858 AGTTGGTACTTCCTCCGTCT 57.694 50.000 0.00 0.00 37.07 4.18
2128 3233 1.203087 TGGTACTTCCTCCGTCTGGAA 60.203 52.381 0.00 0.00 45.87 3.53
2132 3237 4.202131 GGTACTTCCTCCGTCTGGAATTAG 60.202 50.000 0.00 0.00 45.87 1.73
2147 3252 4.213270 TGGAATTAGTTGTCGCTCAAAGTG 59.787 41.667 0.00 0.00 37.81 3.16
2148 3253 3.813529 ATTAGTTGTCGCTCAAAGTGC 57.186 42.857 0.00 0.00 37.81 4.40
2149 3254 2.526304 TAGTTGTCGCTCAAAGTGCT 57.474 45.000 0.00 0.00 37.81 4.40
2150 3255 2.526304 AGTTGTCGCTCAAAGTGCTA 57.474 45.000 0.00 0.00 37.81 3.49
2157 3262 3.548268 GTCGCTCAAAGTGCTAGATACAC 59.452 47.826 0.00 0.00 38.35 2.90
2168 3273 2.418197 GCTAGATACACCCGTTTGAGCA 60.418 50.000 0.00 0.00 0.00 4.26
2382 3501 9.527157 TTCACTAAGAAATGATTAACATGGGAA 57.473 29.630 0.00 0.00 39.39 3.97
2427 3546 8.088365 GGAAATCCTTTACACTTGTATTTGCTT 58.912 33.333 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.305046 GAGGAGGGGGTCGACAGAA 60.305 63.158 18.91 0.00 0.00 3.02
1 2 2.359404 GAGGAGGGGGTCGACAGA 59.641 66.667 18.91 0.00 0.00 3.41
2 3 2.760385 GGAGGAGGGGGTCGACAG 60.760 72.222 18.91 0.00 0.00 3.51
3 4 2.800159 GAAGGAGGAGGGGGTCGACA 62.800 65.000 18.91 0.00 0.00 4.35
4 5 2.039137 AAGGAGGAGGGGGTCGAC 59.961 66.667 7.13 7.13 0.00 4.20
5 6 2.363361 GAAGGAGGAGGGGGTCGA 59.637 66.667 0.00 0.00 0.00 4.20
6 7 2.764547 GGAAGGAGGAGGGGGTCG 60.765 72.222 0.00 0.00 0.00 4.79
7 8 2.367107 GGGAAGGAGGAGGGGGTC 60.367 72.222 0.00 0.00 0.00 4.46
8 9 2.882143 AGGGAAGGAGGAGGGGGT 60.882 66.667 0.00 0.00 0.00 4.95
9 10 2.040359 GAGGGAAGGAGGAGGGGG 60.040 72.222 0.00 0.00 0.00 5.40
10 11 2.444895 CGAGGGAAGGAGGAGGGG 60.445 72.222 0.00 0.00 0.00 4.79
11 12 2.060980 CACGAGGGAAGGAGGAGGG 61.061 68.421 0.00 0.00 0.00 4.30
12 13 2.726351 GCACGAGGGAAGGAGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
13 14 2.896443 GCACGAGGGAAGGAGGAG 59.104 66.667 0.00 0.00 0.00 3.69
14 15 3.068691 CGCACGAGGGAAGGAGGA 61.069 66.667 0.00 0.00 0.00 3.71
15 16 4.821589 GCGCACGAGGGAAGGAGG 62.822 72.222 0.30 0.00 0.00 4.30
16 17 4.821589 GGCGCACGAGGGAAGGAG 62.822 72.222 10.83 0.00 0.00 3.69
27 28 4.389576 CCTCTTGTTGCGGCGCAC 62.390 66.667 36.57 27.65 38.71 5.34
30 31 4.697756 TCCCCTCTTGTTGCGGCG 62.698 66.667 0.51 0.51 0.00 6.46
31 32 2.747855 CTCCCCTCTTGTTGCGGC 60.748 66.667 0.00 0.00 0.00 6.53
32 33 2.747855 GCTCCCCTCTTGTTGCGG 60.748 66.667 0.00 0.00 0.00 5.69
33 34 3.121030 CGCTCCCCTCTTGTTGCG 61.121 66.667 0.00 0.00 37.57 4.85
34 35 2.032681 ACGCTCCCCTCTTGTTGC 59.967 61.111 0.00 0.00 0.00 4.17
35 36 1.738099 CGACGCTCCCCTCTTGTTG 60.738 63.158 0.00 0.00 0.00 3.33
36 37 2.657237 CGACGCTCCCCTCTTGTT 59.343 61.111 0.00 0.00 0.00 2.83
37 38 4.070552 GCGACGCTCCCCTCTTGT 62.071 66.667 13.73 0.00 0.00 3.16
49 50 4.933064 GAGGAGATGGGCGCGACG 62.933 72.222 12.10 0.00 0.00 5.12
50 51 2.962697 GAAGAGGAGATGGGCGCGAC 62.963 65.000 12.10 6.99 0.00 5.19
51 52 2.759973 AAGAGGAGATGGGCGCGA 60.760 61.111 12.10 0.00 0.00 5.87
52 53 2.279784 GAAGAGGAGATGGGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
53 54 0.179034 AATGAAGAGGAGATGGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
54 55 1.139654 TCAATGAAGAGGAGATGGGCG 59.860 52.381 0.00 0.00 0.00 6.13
55 56 2.848691 CTCAATGAAGAGGAGATGGGC 58.151 52.381 0.00 0.00 31.94 5.36
56 57 2.486907 GGCTCAATGAAGAGGAGATGGG 60.487 54.545 0.00 0.00 36.15 4.00
57 58 2.806019 CGGCTCAATGAAGAGGAGATGG 60.806 54.545 0.00 0.00 36.15 3.51
58 59 2.481854 CGGCTCAATGAAGAGGAGATG 58.518 52.381 0.00 0.00 36.15 2.90
59 60 1.202627 GCGGCTCAATGAAGAGGAGAT 60.203 52.381 0.00 0.00 36.15 2.75
60 61 0.176680 GCGGCTCAATGAAGAGGAGA 59.823 55.000 0.00 0.00 36.15 3.71
61 62 0.813210 GGCGGCTCAATGAAGAGGAG 60.813 60.000 0.00 0.00 36.15 3.69
62 63 1.221840 GGCGGCTCAATGAAGAGGA 59.778 57.895 0.00 0.00 36.15 3.71
63 64 0.813210 GAGGCGGCTCAATGAAGAGG 60.813 60.000 31.94 0.00 36.15 3.69
64 65 0.813210 GGAGGCGGCTCAATGAAGAG 60.813 60.000 36.07 0.00 38.68 2.85
65 66 1.221840 GGAGGCGGCTCAATGAAGA 59.778 57.895 36.07 0.00 0.00 2.87
66 67 1.094073 CAGGAGGCGGCTCAATGAAG 61.094 60.000 36.07 16.86 0.00 3.02
67 68 1.078214 CAGGAGGCGGCTCAATGAA 60.078 57.895 36.07 0.00 0.00 2.57
68 69 2.586245 CAGGAGGCGGCTCAATGA 59.414 61.111 36.07 0.00 0.00 2.57
69 70 3.207669 GCAGGAGGCGGCTCAATG 61.208 66.667 36.07 31.73 0.00 2.82
70 71 4.496336 GGCAGGAGGCGGCTCAAT 62.496 66.667 36.07 23.24 46.16 2.57
92 93 3.187414 GCAGTGCGAGCTCTCTGC 61.187 66.667 26.71 26.71 44.50 4.26
128 129 3.783362 TTGGGTGCACCGGGTCAAG 62.783 63.158 29.08 0.00 44.64 3.02
129 130 3.360423 TTTGGGTGCACCGGGTCAA 62.360 57.895 29.08 22.97 44.64 3.18
130 131 3.810188 TTTGGGTGCACCGGGTCA 61.810 61.111 29.08 18.44 44.64 4.02
131 132 3.292159 GTTTGGGTGCACCGGGTC 61.292 66.667 29.08 15.92 44.64 4.46
132 133 4.906537 GGTTTGGGTGCACCGGGT 62.907 66.667 29.08 0.00 44.64 5.28
133 134 4.904590 TGGTTTGGGTGCACCGGG 62.905 66.667 29.08 0.00 44.64 5.73
134 135 2.153547 GATTGGTTTGGGTGCACCGG 62.154 60.000 29.08 0.00 44.64 5.28
135 136 1.288752 GATTGGTTTGGGTGCACCG 59.711 57.895 29.08 0.00 44.64 4.94
136 137 1.118356 TGGATTGGTTTGGGTGCACC 61.118 55.000 28.57 28.57 40.81 5.01
137 138 0.033366 GTGGATTGGTTTGGGTGCAC 59.967 55.000 8.80 8.80 0.00 4.57
138 139 0.397675 TGTGGATTGGTTTGGGTGCA 60.398 50.000 0.00 0.00 0.00 4.57
139 140 0.033366 GTGTGGATTGGTTTGGGTGC 59.967 55.000 0.00 0.00 0.00 5.01
140 141 1.340889 CTGTGTGGATTGGTTTGGGTG 59.659 52.381 0.00 0.00 0.00 4.61
141 142 1.703411 CTGTGTGGATTGGTTTGGGT 58.297 50.000 0.00 0.00 0.00 4.51
142 143 0.318120 GCTGTGTGGATTGGTTTGGG 59.682 55.000 0.00 0.00 0.00 4.12
143 144 1.000060 CTGCTGTGTGGATTGGTTTGG 60.000 52.381 0.00 0.00 0.00 3.28
144 145 1.000060 CCTGCTGTGTGGATTGGTTTG 60.000 52.381 0.00 0.00 0.00 2.93
145 146 1.331214 CCTGCTGTGTGGATTGGTTT 58.669 50.000 0.00 0.00 0.00 3.27
146 147 1.181098 GCCTGCTGTGTGGATTGGTT 61.181 55.000 0.00 0.00 0.00 3.67
147 148 1.604593 GCCTGCTGTGTGGATTGGT 60.605 57.895 0.00 0.00 0.00 3.67
148 149 1.592400 CTGCCTGCTGTGTGGATTGG 61.592 60.000 0.00 0.00 0.00 3.16
149 150 1.880894 CTGCCTGCTGTGTGGATTG 59.119 57.895 0.00 0.00 0.00 2.67
150 151 1.975407 GCTGCCTGCTGTGTGGATT 60.975 57.895 0.00 0.00 38.95 3.01
151 152 2.360852 GCTGCCTGCTGTGTGGAT 60.361 61.111 0.00 0.00 38.95 3.41
152 153 4.648626 GGCTGCCTGCTGTGTGGA 62.649 66.667 12.43 0.00 42.39 4.02
153 154 4.960866 TGGCTGCCTGCTGTGTGG 62.961 66.667 21.03 0.00 42.39 4.17
154 155 3.667282 GTGGCTGCCTGCTGTGTG 61.667 66.667 21.03 0.00 42.39 3.82
155 156 4.962836 GGTGGCTGCCTGCTGTGT 62.963 66.667 21.03 0.00 42.39 3.72
161 162 4.463879 CTCCTCGGTGGCTGCCTG 62.464 72.222 21.03 9.90 35.26 4.85
178 179 4.247380 CATGGGAGGAGCTCGGGC 62.247 72.222 7.83 0.00 39.06 6.13
179 180 3.554342 CCATGGGAGGAGCTCGGG 61.554 72.222 7.83 0.00 0.00 5.14
180 181 2.444706 TCCATGGGAGGAGCTCGG 60.445 66.667 13.02 1.09 32.77 4.63
181 182 2.818132 GTCCATGGGAGGAGCTCG 59.182 66.667 13.02 0.00 38.64 5.03
185 186 2.042762 TGGGGTCCATGGGAGGAG 59.957 66.667 13.02 0.00 38.64 3.69
186 187 2.042762 CTGGGGTCCATGGGAGGA 59.957 66.667 13.02 0.00 30.82 3.71
187 188 3.813724 GCTGGGGTCCATGGGAGG 61.814 72.222 13.02 0.00 30.82 4.30
188 189 2.693864 AGCTGGGGTCCATGGGAG 60.694 66.667 13.02 1.79 30.82 4.30
189 190 3.016971 CAGCTGGGGTCCATGGGA 61.017 66.667 13.02 0.00 30.82 4.37
190 191 4.828296 GCAGCTGGGGTCCATGGG 62.828 72.222 17.12 0.00 30.82 4.00
191 192 4.051167 TGCAGCTGGGGTCCATGG 62.051 66.667 17.12 4.97 30.82 3.66
192 193 2.439701 CTGCAGCTGGGGTCCATG 60.440 66.667 17.12 0.00 30.82 3.66
193 194 4.437587 GCTGCAGCTGGGGTCCAT 62.438 66.667 31.33 0.00 38.21 3.41
213 214 3.816367 GAGGGGTGGCGCTCATAGC 62.816 68.421 7.64 1.07 38.02 2.97
214 215 2.423446 GAGGGGTGGCGCTCATAG 59.577 66.667 7.64 0.00 0.00 2.23
215 216 3.161450 GGAGGGGTGGCGCTCATA 61.161 66.667 7.64 0.00 0.00 2.15
223 224 3.700350 AGAGGAGGGGAGGGGTGG 61.700 72.222 0.00 0.00 0.00 4.61
224 225 2.366167 CAGAGGAGGGGAGGGGTG 60.366 72.222 0.00 0.00 0.00 4.61
225 226 2.062448 AAACAGAGGAGGGGAGGGGT 62.062 60.000 0.00 0.00 0.00 4.95
226 227 0.846870 AAAACAGAGGAGGGGAGGGG 60.847 60.000 0.00 0.00 0.00 4.79
227 228 1.004862 GAAAAACAGAGGAGGGGAGGG 59.995 57.143 0.00 0.00 0.00 4.30
228 229 1.004862 GGAAAAACAGAGGAGGGGAGG 59.995 57.143 0.00 0.00 0.00 4.30
229 230 1.988846 AGGAAAAACAGAGGAGGGGAG 59.011 52.381 0.00 0.00 0.00 4.30
230 231 1.985895 GAGGAAAAACAGAGGAGGGGA 59.014 52.381 0.00 0.00 0.00 4.81
231 232 1.988846 AGAGGAAAAACAGAGGAGGGG 59.011 52.381 0.00 0.00 0.00 4.79
232 233 4.580868 GTTAGAGGAAAAACAGAGGAGGG 58.419 47.826 0.00 0.00 0.00 4.30
233 234 4.246458 CGTTAGAGGAAAAACAGAGGAGG 58.754 47.826 0.00 0.00 0.00 4.30
234 235 4.021368 TCCGTTAGAGGAAAAACAGAGGAG 60.021 45.833 0.00 0.00 37.36 3.69
235 236 3.899360 TCCGTTAGAGGAAAAACAGAGGA 59.101 43.478 0.00 0.00 37.36 3.71
236 237 4.246458 CTCCGTTAGAGGAAAAACAGAGG 58.754 47.826 0.00 0.00 40.25 3.69
267 268 6.152661 AGGCTTCATTGATTACGATCCAAAAA 59.847 34.615 0.00 0.00 0.00 1.94
268 269 5.652014 AGGCTTCATTGATTACGATCCAAAA 59.348 36.000 0.00 0.00 0.00 2.44
269 270 5.066375 CAGGCTTCATTGATTACGATCCAAA 59.934 40.000 0.00 0.00 0.00 3.28
270 271 4.576053 CAGGCTTCATTGATTACGATCCAA 59.424 41.667 0.00 0.00 0.00 3.53
271 272 4.129380 CAGGCTTCATTGATTACGATCCA 58.871 43.478 0.00 0.00 0.00 3.41
272 273 3.499918 CCAGGCTTCATTGATTACGATCC 59.500 47.826 0.00 0.00 0.00 3.36
273 274 3.499918 CCCAGGCTTCATTGATTACGATC 59.500 47.826 0.00 0.00 0.00 3.69
274 275 3.136443 TCCCAGGCTTCATTGATTACGAT 59.864 43.478 0.00 0.00 0.00 3.73
275 276 2.503765 TCCCAGGCTTCATTGATTACGA 59.496 45.455 0.00 0.00 0.00 3.43
276 277 2.874701 CTCCCAGGCTTCATTGATTACG 59.125 50.000 0.00 0.00 0.00 3.18
277 278 3.117888 TCCTCCCAGGCTTCATTGATTAC 60.118 47.826 0.00 0.00 34.61 1.89
278 279 3.122480 TCCTCCCAGGCTTCATTGATTA 58.878 45.455 0.00 0.00 34.61 1.75
279 280 1.925255 TCCTCCCAGGCTTCATTGATT 59.075 47.619 0.00 0.00 34.61 2.57
280 281 1.600058 TCCTCCCAGGCTTCATTGAT 58.400 50.000 0.00 0.00 34.61 2.57
281 282 1.283029 CTTCCTCCCAGGCTTCATTGA 59.717 52.381 0.00 0.00 34.61 2.57
282 283 1.760192 CTTCCTCCCAGGCTTCATTG 58.240 55.000 0.00 0.00 34.61 2.82
283 284 0.033699 GCTTCCTCCCAGGCTTCATT 60.034 55.000 0.00 0.00 34.61 2.57
284 285 1.611965 GCTTCCTCCCAGGCTTCAT 59.388 57.895 0.00 0.00 34.61 2.57
285 286 2.606587 GGCTTCCTCCCAGGCTTCA 61.607 63.158 0.00 0.00 34.61 3.02
286 287 0.983378 TAGGCTTCCTCCCAGGCTTC 60.983 60.000 0.91 0.00 44.50 3.86
287 288 0.327964 ATAGGCTTCCTCCCAGGCTT 60.328 55.000 0.91 0.00 44.50 4.35
289 290 1.056700 TGATAGGCTTCCTCCCAGGC 61.057 60.000 0.00 0.00 34.61 4.85
290 291 0.761802 GTGATAGGCTTCCTCCCAGG 59.238 60.000 0.00 0.00 34.61 4.45
291 292 0.761802 GGTGATAGGCTTCCTCCCAG 59.238 60.000 0.00 0.00 34.61 4.45
292 293 0.044092 TGGTGATAGGCTTCCTCCCA 59.956 55.000 0.00 0.00 34.61 4.37
293 294 1.439543 ATGGTGATAGGCTTCCTCCC 58.560 55.000 0.00 0.00 34.61 4.30
294 295 3.118956 CGATATGGTGATAGGCTTCCTCC 60.119 52.174 0.00 0.00 34.61 4.30
295 296 3.118956 CCGATATGGTGATAGGCTTCCTC 60.119 52.174 0.00 0.00 34.61 3.71
296 297 2.834549 CCGATATGGTGATAGGCTTCCT 59.165 50.000 0.00 0.00 37.71 3.36
297 298 2.678190 GCCGATATGGTGATAGGCTTCC 60.678 54.545 0.00 0.00 42.54 3.46
298 299 2.622436 GCCGATATGGTGATAGGCTTC 58.378 52.381 0.00 0.00 42.54 3.86
299 300 1.279271 GGCCGATATGGTGATAGGCTT 59.721 52.381 7.35 0.00 44.54 4.35
300 301 0.905357 GGCCGATATGGTGATAGGCT 59.095 55.000 7.35 0.00 44.54 4.58
301 302 0.107654 GGGCCGATATGGTGATAGGC 60.108 60.000 0.00 0.00 44.44 3.93
302 303 1.208052 CTGGGCCGATATGGTGATAGG 59.792 57.143 0.00 0.00 41.21 2.57
303 304 1.902508 ACTGGGCCGATATGGTGATAG 59.097 52.381 0.00 0.00 41.21 2.08
304 305 2.024176 ACTGGGCCGATATGGTGATA 57.976 50.000 0.00 0.00 41.21 2.15
305 306 2.024176 TACTGGGCCGATATGGTGAT 57.976 50.000 0.00 0.00 41.21 3.06
306 307 1.623311 CATACTGGGCCGATATGGTGA 59.377 52.381 15.70 0.00 41.21 4.02
307 308 1.339055 CCATACTGGGCCGATATGGTG 60.339 57.143 26.70 11.17 40.29 4.17
308 309 0.984230 CCATACTGGGCCGATATGGT 59.016 55.000 26.70 10.90 40.29 3.55
309 310 3.861341 CCATACTGGGCCGATATGG 57.139 57.895 23.92 23.92 39.48 2.74
320 321 0.464036 TTCCTACGCCAGCCATACTG 59.536 55.000 0.00 0.00 46.77 2.74
321 322 0.753262 CTTCCTACGCCAGCCATACT 59.247 55.000 0.00 0.00 0.00 2.12
322 323 0.464452 ACTTCCTACGCCAGCCATAC 59.536 55.000 0.00 0.00 0.00 2.39
323 324 1.684983 GTACTTCCTACGCCAGCCATA 59.315 52.381 0.00 0.00 0.00 2.74
324 325 0.464452 GTACTTCCTACGCCAGCCAT 59.536 55.000 0.00 0.00 0.00 4.40
325 326 0.901114 TGTACTTCCTACGCCAGCCA 60.901 55.000 0.00 0.00 0.00 4.75
326 327 0.459759 GTGTACTTCCTACGCCAGCC 60.460 60.000 0.00 0.00 30.58 4.85
327 328 3.046280 GTGTACTTCCTACGCCAGC 57.954 57.895 0.00 0.00 30.58 4.85
331 332 0.525029 GCGAGGTGTACTTCCTACGC 60.525 60.000 22.69 22.69 40.80 4.42
332 333 0.247974 CGCGAGGTGTACTTCCTACG 60.248 60.000 0.00 13.66 35.20 3.51
333 334 0.807496 ACGCGAGGTGTACTTCCTAC 59.193 55.000 15.93 5.55 35.20 3.18
334 335 2.401583 TACGCGAGGTGTACTTCCTA 57.598 50.000 15.93 0.00 35.20 2.94
335 336 1.760192 ATACGCGAGGTGTACTTCCT 58.240 50.000 15.93 9.34 38.09 3.36
336 337 3.911661 ATATACGCGAGGTGTACTTCC 57.088 47.619 15.93 0.00 31.18 3.46
337 338 7.864307 AAAATATATACGCGAGGTGTACTTC 57.136 36.000 15.93 0.00 31.18 3.01
338 339 9.748708 TTTAAAATATATACGCGAGGTGTACTT 57.251 29.630 15.93 0.00 31.18 2.24
339 340 9.918630 ATTTAAAATATATACGCGAGGTGTACT 57.081 29.630 15.93 0.00 31.18 2.73
371 372 9.825972 CTTCTTCTCATAAATTTACGCTTTCAA 57.174 29.630 0.00 0.00 0.00 2.69
372 373 7.962918 GCTTCTTCTCATAAATTTACGCTTTCA 59.037 33.333 0.00 0.00 0.00 2.69
373 374 7.162708 CGCTTCTTCTCATAAATTTACGCTTTC 59.837 37.037 0.00 0.00 0.00 2.62
374 375 6.961554 CGCTTCTTCTCATAAATTTACGCTTT 59.038 34.615 0.00 0.00 0.00 3.51
375 376 6.092259 ACGCTTCTTCTCATAAATTTACGCTT 59.908 34.615 0.00 0.00 0.00 4.68
376 377 5.581085 ACGCTTCTTCTCATAAATTTACGCT 59.419 36.000 0.00 0.00 0.00 5.07
377 378 5.796813 ACGCTTCTTCTCATAAATTTACGC 58.203 37.500 0.00 0.00 0.00 4.42
378 379 9.916397 AAATACGCTTCTTCTCATAAATTTACG 57.084 29.630 0.00 0.00 0.00 3.18
381 382 9.559958 CACAAATACGCTTCTTCTCATAAATTT 57.440 29.630 0.00 0.00 0.00 1.82
382 383 8.946085 TCACAAATACGCTTCTTCTCATAAATT 58.054 29.630 0.00 0.00 0.00 1.82
383 384 8.492673 TCACAAATACGCTTCTTCTCATAAAT 57.507 30.769 0.00 0.00 0.00 1.40
384 385 7.899178 TCACAAATACGCTTCTTCTCATAAA 57.101 32.000 0.00 0.00 0.00 1.40
385 386 7.763985 TCATCACAAATACGCTTCTTCTCATAA 59.236 33.333 0.00 0.00 0.00 1.90
386 387 7.264947 TCATCACAAATACGCTTCTTCTCATA 58.735 34.615 0.00 0.00 0.00 2.15
387 388 6.108687 TCATCACAAATACGCTTCTTCTCAT 58.891 36.000 0.00 0.00 0.00 2.90
388 389 5.478407 TCATCACAAATACGCTTCTTCTCA 58.522 37.500 0.00 0.00 0.00 3.27
389 390 6.256539 TCATCATCACAAATACGCTTCTTCTC 59.743 38.462 0.00 0.00 0.00 2.87
390 391 6.108687 TCATCATCACAAATACGCTTCTTCT 58.891 36.000 0.00 0.00 0.00 2.85
391 392 6.349973 TCATCATCACAAATACGCTTCTTC 57.650 37.500 0.00 0.00 0.00 2.87
392 393 6.403636 GGTTCATCATCACAAATACGCTTCTT 60.404 38.462 0.00 0.00 0.00 2.52
393 394 5.065218 GGTTCATCATCACAAATACGCTTCT 59.935 40.000 0.00 0.00 0.00 2.85
394 395 5.266242 GGTTCATCATCACAAATACGCTTC 58.734 41.667 0.00 0.00 0.00 3.86
395 396 4.096382 GGGTTCATCATCACAAATACGCTT 59.904 41.667 0.00 0.00 0.00 4.68
396 397 3.627577 GGGTTCATCATCACAAATACGCT 59.372 43.478 0.00 0.00 0.00 5.07
397 398 3.376859 TGGGTTCATCATCACAAATACGC 59.623 43.478 0.00 0.00 0.00 4.42
398 399 4.394610 TGTGGGTTCATCATCACAAATACG 59.605 41.667 0.00 0.00 37.22 3.06
399 400 5.647658 TCTGTGGGTTCATCATCACAAATAC 59.352 40.000 0.00 0.00 39.26 1.89
400 401 5.814481 TCTGTGGGTTCATCATCACAAATA 58.186 37.500 0.00 0.00 39.26 1.40
401 402 4.665451 TCTGTGGGTTCATCATCACAAAT 58.335 39.130 0.00 0.00 39.26 2.32
402 403 4.074259 CTCTGTGGGTTCATCATCACAAA 58.926 43.478 0.00 0.00 39.26 2.83
403 404 3.072915 ACTCTGTGGGTTCATCATCACAA 59.927 43.478 0.00 0.00 39.26 3.33
404 405 2.639347 ACTCTGTGGGTTCATCATCACA 59.361 45.455 0.00 0.00 37.73 3.58
405 406 3.265791 GACTCTGTGGGTTCATCATCAC 58.734 50.000 0.00 0.00 0.00 3.06
406 407 2.905736 TGACTCTGTGGGTTCATCATCA 59.094 45.455 0.00 0.00 0.00 3.07
407 408 3.616956 TGACTCTGTGGGTTCATCATC 57.383 47.619 0.00 0.00 0.00 2.92
408 409 4.521146 GATTGACTCTGTGGGTTCATCAT 58.479 43.478 0.00 0.00 0.00 2.45
409 410 3.307691 GGATTGACTCTGTGGGTTCATCA 60.308 47.826 0.00 0.00 0.00 3.07
410 411 3.274288 GGATTGACTCTGTGGGTTCATC 58.726 50.000 0.00 0.00 0.00 2.92
411 412 2.355108 CGGATTGACTCTGTGGGTTCAT 60.355 50.000 0.00 0.00 0.00 2.57
412 413 1.001974 CGGATTGACTCTGTGGGTTCA 59.998 52.381 0.00 0.00 0.00 3.18
413 414 1.726853 CGGATTGACTCTGTGGGTTC 58.273 55.000 0.00 0.00 0.00 3.62
414 415 0.321653 GCGGATTGACTCTGTGGGTT 60.322 55.000 0.00 0.00 32.34 4.11
415 416 1.296715 GCGGATTGACTCTGTGGGT 59.703 57.895 0.00 0.00 32.34 4.51
416 417 1.811266 CGCGGATTGACTCTGTGGG 60.811 63.158 0.00 0.00 37.15 4.61
417 418 2.456119 GCGCGGATTGACTCTGTGG 61.456 63.158 8.83 0.00 40.50 4.17
418 419 1.016130 AAGCGCGGATTGACTCTGTG 61.016 55.000 8.83 0.00 42.62 3.66
419 420 0.320771 AAAGCGCGGATTGACTCTGT 60.321 50.000 8.83 0.00 32.34 3.41
420 421 1.640428 TAAAGCGCGGATTGACTCTG 58.360 50.000 8.83 0.00 0.00 3.35
421 422 2.604046 ATAAAGCGCGGATTGACTCT 57.396 45.000 8.83 0.00 0.00 3.24
422 423 4.992381 ATAATAAAGCGCGGATTGACTC 57.008 40.909 8.83 0.00 0.00 3.36
423 424 4.574828 ACAATAATAAAGCGCGGATTGACT 59.425 37.500 8.83 0.00 0.00 3.41
424 425 4.844267 ACAATAATAAAGCGCGGATTGAC 58.156 39.130 8.83 0.00 0.00 3.18
425 426 5.493133 AACAATAATAAAGCGCGGATTGA 57.507 34.783 8.83 0.00 0.00 2.57
426 427 6.359617 CCTTAACAATAATAAAGCGCGGATTG 59.640 38.462 8.83 9.26 0.00 2.67
427 428 6.261381 TCCTTAACAATAATAAAGCGCGGATT 59.739 34.615 8.83 5.71 0.00 3.01
428 429 5.761234 TCCTTAACAATAATAAAGCGCGGAT 59.239 36.000 8.83 0.00 0.00 4.18
429 430 5.117584 TCCTTAACAATAATAAAGCGCGGA 58.882 37.500 8.83 0.00 0.00 5.54
430 431 5.412526 TCCTTAACAATAATAAAGCGCGG 57.587 39.130 8.83 0.00 0.00 6.46
431 432 7.184106 TCTTTCCTTAACAATAATAAAGCGCG 58.816 34.615 0.00 0.00 30.95 6.86
481 483 8.351495 ACATGTTTTAGTGTGTTTATTTGCTG 57.649 30.769 0.00 0.00 0.00 4.41
563 566 9.357652 GCAGATTCACTCATTTTGCTTTAAATA 57.642 29.630 0.00 0.00 0.00 1.40
567 570 6.016024 AGTGCAGATTCACTCATTTTGCTTTA 60.016 34.615 0.00 0.00 43.28 1.85
568 571 4.986659 GTGCAGATTCACTCATTTTGCTTT 59.013 37.500 0.00 0.00 34.29 3.51
569 572 4.280174 AGTGCAGATTCACTCATTTTGCTT 59.720 37.500 0.00 0.00 43.28 3.91
653 656 7.125792 GGATGTCTCCCTCTGTTTCTAATTA 57.874 40.000 0.00 0.00 35.28 1.40
655 658 5.622346 GGATGTCTCCCTCTGTTTCTAAT 57.378 43.478 0.00 0.00 35.28 1.73
758 762 9.094578 CCCTCTCTCCATGAATTTATAACTAGA 57.905 37.037 0.00 0.00 0.00 2.43
759 763 8.875168 ACCCTCTCTCCATGAATTTATAACTAG 58.125 37.037 0.00 0.00 0.00 2.57
760 764 8.798975 ACCCTCTCTCCATGAATTTATAACTA 57.201 34.615 0.00 0.00 0.00 2.24
765 1640 6.992715 CGTTAACCCTCTCTCCATGAATTTAT 59.007 38.462 0.00 0.00 0.00 1.40
798 1673 5.180304 CACTTGAGCCCTTACTTTTCTTCTC 59.820 44.000 0.00 0.00 0.00 2.87
805 1680 2.656947 TGCACTTGAGCCCTTACTTT 57.343 45.000 0.00 0.00 0.00 2.66
816 1691 1.673920 GGTTTCCTCGTTTGCACTTGA 59.326 47.619 0.00 0.00 0.00 3.02
1143 2022 3.618507 GCTTCTGCTTCTTCTTAGCCTCA 60.619 47.826 0.00 0.00 37.85 3.86
1537 2416 4.412207 GAAACGCAATGGATGGAACTAAC 58.588 43.478 0.00 0.00 0.00 2.34
1719 2599 3.723260 TCATCGTTAAACACAGCAGACA 58.277 40.909 0.00 0.00 0.00 3.41
1742 2622 8.277197 TCCATGGAATCAAGTCTAGATTTTCAT 58.723 33.333 13.46 0.00 35.93 2.57
1753 2633 2.691409 TCGGTCCATGGAATCAAGTC 57.309 50.000 18.20 1.29 0.00 3.01
1754 2634 2.571653 TCTTCGGTCCATGGAATCAAGT 59.428 45.455 18.20 0.00 0.00 3.16
1756 2636 3.712016 TTCTTCGGTCCATGGAATCAA 57.288 42.857 18.20 8.13 0.00 2.57
1757 2637 3.712016 TTTCTTCGGTCCATGGAATCA 57.288 42.857 18.20 0.00 0.00 2.57
1758 2638 5.823045 ACTAATTTCTTCGGTCCATGGAATC 59.177 40.000 18.20 11.11 0.00 2.52
1759 2639 5.590259 CACTAATTTCTTCGGTCCATGGAAT 59.410 40.000 18.20 0.00 0.00 3.01
1760 2640 4.941263 CACTAATTTCTTCGGTCCATGGAA 59.059 41.667 18.20 0.00 0.00 3.53
1761 2641 4.513442 CACTAATTTCTTCGGTCCATGGA 58.487 43.478 11.44 11.44 0.00 3.41
1762 2642 3.065371 GCACTAATTTCTTCGGTCCATGG 59.935 47.826 4.97 4.97 0.00 3.66
1763 2643 3.065371 GGCACTAATTTCTTCGGTCCATG 59.935 47.826 0.00 0.00 0.00 3.66
1764 2644 3.054361 AGGCACTAATTTCTTCGGTCCAT 60.054 43.478 0.00 0.00 36.02 3.41
1765 2645 2.304761 AGGCACTAATTTCTTCGGTCCA 59.695 45.455 0.00 0.00 36.02 4.02
1766 2646 2.678336 CAGGCACTAATTTCTTCGGTCC 59.322 50.000 0.00 0.00 36.02 4.46
1767 2647 2.096013 GCAGGCACTAATTTCTTCGGTC 59.904 50.000 0.00 0.00 36.02 4.79
1768 2648 2.084546 GCAGGCACTAATTTCTTCGGT 58.915 47.619 0.00 0.00 36.02 4.69
1769 2649 1.401905 GGCAGGCACTAATTTCTTCGG 59.598 52.381 0.00 0.00 36.02 4.30
1770 2650 2.359900 AGGCAGGCACTAATTTCTTCG 58.640 47.619 0.00 0.00 36.02 3.79
1771 2651 4.013050 AGAAGGCAGGCACTAATTTCTTC 58.987 43.478 0.00 0.00 36.02 2.87
1772 2652 4.039603 AGAAGGCAGGCACTAATTTCTT 57.960 40.909 0.00 0.00 36.02 2.52
1773 2653 3.728385 AGAAGGCAGGCACTAATTTCT 57.272 42.857 0.00 0.00 36.02 2.52
1788 2668 3.242870 GGAACAGCATTTCGCATAGAAGG 60.243 47.826 0.00 0.00 46.13 3.46
1888 2779 1.470098 CAATCCTCTGGCGTCCAAAAG 59.530 52.381 0.35 1.76 30.80 2.27
2124 3229 4.213270 CACTTTGAGCGACAACTAATTCCA 59.787 41.667 0.00 0.00 38.29 3.53
2128 3233 3.403038 AGCACTTTGAGCGACAACTAAT 58.597 40.909 0.00 0.00 38.29 1.73
2132 3237 2.404215 TCTAGCACTTTGAGCGACAAC 58.596 47.619 0.00 0.00 38.29 3.32
2147 3252 2.202566 GCTCAAACGGGTGTATCTAGC 58.797 52.381 0.00 0.00 0.00 3.42
2148 3253 3.520290 TGCTCAAACGGGTGTATCTAG 57.480 47.619 0.00 0.00 0.00 2.43
2149 3254 3.007074 TGTTGCTCAAACGGGTGTATCTA 59.993 43.478 0.00 0.00 42.10 1.98
2150 3255 2.224426 TGTTGCTCAAACGGGTGTATCT 60.224 45.455 0.00 0.00 42.10 1.98
2157 3262 3.915437 ATTAGTTGTTGCTCAAACGGG 57.085 42.857 0.00 0.00 42.10 5.28
2168 3273 4.540099 TCCCTCCATCTGGAATTAGTTGTT 59.460 41.667 0.00 0.00 44.91 2.83
2245 3351 4.655963 ACAACACTTGATTCCAGTGCTAT 58.344 39.130 15.74 2.68 37.08 2.97
2369 3488 7.936584 TCGGAATTTATGTTCCCATGTTAATC 58.063 34.615 0.44 0.00 43.86 1.75
2397 3516 8.877864 AATACAAGTGTAAAGGATTTCCATGA 57.122 30.769 0.00 0.00 40.09 3.07
2427 3546 5.309806 AGGAAGTAAACTAAGAGGAAAGCCA 59.690 40.000 0.00 0.00 36.29 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.