>input_sequence_79057
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--------------------------------------ATGGACCGCCTCTTGCTGTCCCGCCCCCCGATGCCCACCCCC
GTCCACGGCGCTGCCACGGCCGCAGATGGCGACCTCCTCGAGCTCGACGTCCTCTGGCCCGCCTCTTCAGCTCCGGGACT
CCTCGCCGCGCTTCCCGATGATGAGGCTAAGAAGAAGCAGAAGCGCGCGGGCGGCCCTGCCGTCCGATCCGCCGCGCGCG
CCGTCCCGGAGAAGGCCGCGTTGACCCCGTCTTCGGCGGCGAGGTCGGCTCCGGTGCGCATACCTTCGGATGCTGCGGCG
CGGAGAGGGAGGTGGTCCCACGTCGTCGTCGGCGGCGACGACGGGGACGCCATGGTCCCGCCGCACGAGATCGTCGCGCG
GCGCGCGGCAGCGCACAGCTCCGTGCTGGAGGGAGCCGGGAGGACGCTCAAGGGCCGCGACCTCCGCCGCGTACGCAACA
CCGTCCTGCGCCGCACCGGCTTCCTCGACTGA------------------------------------------------
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>chr5A_1_TraesCS5A01G127300
TTCTGTCGACCCCCTCCTCCTTCCCTCGTGCGCCGCAACAAGAGGGGAGCGTCGCGCCCATCTCCTCTTCATTGAGCCGC
CTCCTGCCCCGAGCAGAGAGCTCGCACTGCGCCCCACCGAAGGCCGGCCTTGACCCGGTGCACCCAAACCAATCCACACA
GCAGGCAGCCACCGAGGAGCCCGAGCTCCTCCCATGGACCCCAGCTGCAGCTCGCTATGAGCGCCACCCCTCCCCTCCTC
TGTTTTTCCTCTAACGGAGTTGCTATTTTTTTGGATCGTAATCAATGAAGCCTGGGAGGAAGCCTATCACCATATCGGCC
CAGTATGGCTGGCGTAGGAAGTACACCTCGCGTATATATTTTAAATTTAAATTGAAAGCGTAAATTTATGAGAAGAAGCG
TATTTGTGATGATGAACCCACAGAGTCAATCCGCGCTTTATTATTGTTAAGGAAAGATATAGACTATATACAA-ACTGAA
ATCAGCAAATAAACACACTAAAACATGTCTATATACCCTTTCTGTTTCTAAATATAAGTCTTTTT-GAGATTTCAATATA
GACTATATTTAAAGCAAAATGAGTGAATCTGCACTCTAAACTATATCTATATACATATGTATGTAGTCAATATTAAAATC
TAAAAAAAAGACTTATAATTAGAAACAGAGGGAG-ACATCCCATTTAGATCAGAACATCTTATATTTATGAACAATAGGG
AGTACCACTGTTATGTGTCCTATGAATAAAGATATTGTATATCTA-----------------------------------
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------------------------------------GTTATAAATTCATGGAGAGAGGGTTAACGATGTATTGAGAAGAA
AAGTAAGGGCTCAAGTGCAAACGAGGAAACCAACCTCCTCCCT----ATAACAACTCCGCCGCGCGCCCACCTCCCCTCG
CCGGTATCGTGTCCTCGTTCACGCCCAACCCACCCCACCCCATTTCCCCGACCTCCGATGCCGGAGCGCCGCAACGTAGC
CGGAGATCCGCCGTACTGGTGATCCCCGGATAACAACGATGGACCGCCTCTTGCTGTCCCGCCCCCCGATGCCCACCCCC
GTCCACGGCGCTGCCACGGCCGCAGATGGCGACCTCCTCGAGCTCGACGTCCTCTGGCCCGCCTCTTCAGCTCCGGGACT
CCTCGCCGCGCTTCCCGATGATGAGGCTAAGAAGAAGCAGAAGCGCGCGGGCGGCCCTGCCGTCCGATCCGCCGCGCGCG
CCGTCCCGGAGAAGGCCGCGTTGACCCCGTCTTCGGCGGCGAGGTCGGCTCCGGTGCGCATACCTTCGGATGCTGCGGCG
CGGAGAGGGAGGTGGTCCCACGTCGTCGTCGGCGGCGACGACGGGGACGCCATGGTCCCGCCGCACGAGATCGTCGCGCG
GCGCGCGGCAGCGCACAGCTCCGTGCTGGAGGGAGCCGGGAGGACGCTCAAGGGCCGCGACCTCCGCCGCGTACGCAACA
CCGTCCTGCGCCGCACCGGCTTCCTCGACTGAGAGGCGGAGGCGAGTCGCCTCGTCGCTTTCGCGATAAAGTTTTGACTT
CTGTTAATTCCCCCCGTTAGTTCCATCCATTGCGTTTCCGGCAGTTTTGATTTCATTCCCCGATGGGAAGGGGATGAAAA
GTAAAGAGGTGAGGTGAGATGAGTGAGCGAGAATTACAACACGACAATAACAGTGCTGTTCCATTCCATCACATTATATA
TATGGAAATTTTGGCCATTATGTTT-GTTCAATCAGTTTGTCTGCTGTGTTTAACGATGAAATGAAAATCTAGACTTGAT
TCCATGGACCGAAGAAATTAGTGCCTGCCTTCTATGCGAAATGCTGTTCCTGACGAATTATGTTGGGCTCCTATCTTCTA
CAGTGCTTGATGCAGA-----------AAGATGCAAAATGAAATTCTTTGGTGGTTGCCTTTTGGACGCCAGAGGATTGT
TGAATTGGCTCTCTGCTCACAGGCTTGTGCTTAGTCTAT--------------TCTAGTTAT--------------GTTT
GGATCATAACATGTTCCCATTTCTAGCTAATGGTGGAGAAAATTCAGCGCTACAAT-GTTATC---------GTACTGGT
TACGTTGTAGTTCTATGTCGTGGAACTTTTATTGC----------TTTGTGCTGGTTATGGGTTATCACATGTGGTAATA
AT------------------------------------------------------------------------------
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--------TAGTTGGTACTTCCTCCGTCTGGAATTAGTTGTCGCTCAAAGTGCTAGATACACCCGTTTGAGCAACAACTA
ATTCCAGATGGAGGGAGTATTTTGTTTCTGTTTCTA-TTTTTTCATGTAAATTCATTCTCACGGAGAAACATAGCACTGG
AATCAAGTGTTGTTTTTCAAACAATGGTTGTGTTCTTGTGGAGATTAGAGATAAATAAGGCTTAGGTCAAAATGTTTTGT
TGATATCTGAACA-------------ATTTGATGTTCACTAAGAAATGATTAACATGGGAACATAAATTCCGATTTCATG
GAAATCCTTTACACTTGTATTTGCTTGGCTTTCCTCTTAGTTTACTTCCTGTTGCAATAGTGCTTTTTTACT
>chr5D_457
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--------------------------------------------------------ATATAGACTGTATACAAGACTGAA
ATTAGCGAACAAACACACTAAAACATGTCTATATATTCCTTTTGTTCCTAAATATAAGTCTTTTTAGATATTCCAATATG
GACTACATTCGGAGCAAAATGAATGAATCTGCACTCTAAACTATGTCTATATACATTCGTATATAGTCAATATTGAAATC
TCT-AAAAAGACTTACATTTAGAAACAAAAGGAGTACATCCCATTTAGATCAGAACATCTTATATTTATGAACAATAGGG
AGTACCACT-----------------------------------A-----------------------------------
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------------------------------------GTTCTAAATTCACGGAGAGAGGGTTAACGATGTATTCAGAAAAC
AAGTAAGGGCCCAAATGCAAACGAGGAAACCAACCTCCTCCTCCCCTGTAACAACTCCGCCGCGCGCCCACCTCCCCTCG
CCGGTATCGTGTCCTCGTTCACGCCCAACCCAACCCACCCCATTTCCCCGACCTCCGATGCCGGAGCGCCGCAACGTAGC
CGGAGACCCGCCGTACTGGTGATCCCCGGATAACAACGATGGACCGCCTCTTGCTGTCCCGCCCCCCGATGCCCACCCCC
GTCCACGGCGCTGCCACGGCCGCAGATGGCGACCTCCTCGAGCTCGACGTCCTCTGGCCCGCCTCTTCAGCTCCGGGACT
CCTCGCCGCGCTTCCCGATGACGAGGCTAAGAAGAAGCAGAAGCGCGCGGGCGGCCCTGCCGTCCGATCCGCCGCCCGCG
CCGTCCCGGAGAAGGCCGCGTTGACCCCGTCTTCGGTGGCGAGGTCGGCTCCGGTGCGCATACCTTCGGATGCTGCGGCG
CGGAGAGGGAGGTGGCCCCACGTCGTCGGTGGCGGCGACGACGGGGACGCCATGGTCCCGCCGCACGAGATCGTCGCGCG
GCGCGCGGCAGCGCACAGCTCGGTGCTGGAGGGAGCCGGGAGGACGCTCAAGGGCCGCGACCTCCGCCGCGTACGCAACA
CCGTCCTGCGCCGCACCGGCTTCCTCGACTGAGAGGCGGAGGCGAGTCGCCTCGTCGCTTTCGCGATAAAGTTTTGACTT
CTGTTAATTCCTCCCTTTAGTTCCATCCGTTGCGTTTCCGGCAGTTTTGATTTCATTCCCCGATGGGAAGGGGATGAAAA
GTAAAGTGGTGAGGTGAGATGAGTGACCGAGGATTATAACACGACAATAACAGTGCTGTTCCATTCCATCACATTATATA
TATGGAATTTTTGGCCATTATATTTTGTTCAATCAGTTCGTCTGCTGTGTTTAACAATGAAGTGAAAATCTATGC-----
-------------GAAATTAGTGCCTGGCTTCTATGCGAAATGCTGTTCCTGACGAATTATGTTGGGCTCCTATCTTCTA
CAGTGCTTGATGCAGAGAATCAGGTTGAAGATGCAAAATGAAATTCTTTGGTGGTTGCATTTTGGACGCCAGAGGATTGT
TGAATTGGCTATCTGCTCACAGGCTTGTGCTTGGTCTAT--------------TCTCGTCAATAACTTGTTGATAAATTT
GGATCATAGCATGTTTCCGTTTCTAGCTAATGGTGGAGAAAATTCAGCGATATAAT-GTTATCAGCATGCTAGTACTGGT
TACGTTGTAGTTCTATGTCGTGGAATTTTTATTGCTGTTACAACATTTGTGCTGGTTATGGGTTACAACAAATGGTGGTA
ATAATTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGACATTTCAAACGGACTACAACATACGGATGTATGTAGACAT
ATTTTAGAGTGCAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATATCTAAAAAGACTTATATTTGGGAAC
GGAGGGAGTAGTTGGTACTTCCTCCGTCCGGAGTTACTTGTCGCTCAAAGT----GATACATCCGTTTGAGCGACAACTA
ATTCCAGATGGAGGGAGTATTTTGTTTCTGTTTCTATTTTTTTCATGTAAATTCACTCTCACGGAGAAACTTAGCACTGG
AATCAAGTGTTGTTTTTCAAACAATGGTCCTGTTCTTGTGGAGATTAGAGATAAATAACGGTTAGGTCAAAATGTTTTGT
TGATATCTGAACA-------------ATTTGATGTTCACTAAGAAATTATTAACATGGGAGCATAAGTTCCCATTCCATG
GAAATGCTTTACACTTGTATTTGCTGGGCTTTCCTCTTAGTTTACTTCCTGTTGCAATAGTGCTTTTTTACT
>chr5B_699
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-------------------------------------------------------------ATATTTATGAACAATAGGG
AGTACCACT-----------------------------------ATTATGTGTCCTATAAATAAAGATAGGGTCGCGCTA
ACTGCCACACGTGTGGCAAAAAGGGAGACGCACCACACGTCTCTAATGTAAACAGATTACCACGTCATCTCATGCATGCA
TGCAGGAATCTTTTTGGATTTTCAGTTTTTAAAATGTTTTATCTCTTAAACGAAAAATCCGATTGAAAATCCGTTTTCAC
CATTAAATCCCTCGCGATGAGATCTTCGAAACTAGATCCCATGTTGATATGTTTTGATGAATTTTTTTTTGGATTAAAAG
TTGCCATGTCTATTGCATATGAATTGCCATGATGTTTACACTGAAATTGCCATGATATGTTTCAGCTATTTTCTTCTACA
TTTAAAAGTAAATTTTGACATTTATAAAACGGGGAATTAAGAAACTAGACTTGCCATGAACCATAAACTAAAATTGCCAT
GATACATGCACGTAAAATTGTCATGGTTCATACAAAAAATAATTTTCATGGTCAAAATACTGGAGTTGCCATCATCAAAG
TACTAAAATTGCCATGATCTACAAACTAAAATTGCCACATGGCAACTTTAGTTTAAGCCCTATGGCAACTGCAGTGTAAA
CTTCGTGGCAACTTTTGTAAAAAAAAATCGTCGAAACATATCAACATGGGGTCTAGTTTTGAAGATCTCGTCGAGACGGA
TTTAATGGTGAAAATGGATTTTTAGTTCTCTTTTTTATTTAGGAGATACAACATTTTTAAGCCGAAAACCAAAAAAAAAT
CTGCTGATGTCATCTATTCATACGTGGCAAAATGAGTGGTGATGGAGGCGTGTGGACGATGTGCAAACGCCCACACATGT
GGGCGTTAACATTTCCGTAAAGATATTGTATAACTAGTTCTAAATTCATGGAGAGAGGGTTAACGATGTATTCAGAAGAC
AAGTAAGGGCCCAAGTGCAAACGAGGAAACCAACCTCCTCCCTCCCTATAACAACTCCGCCGCGCACCCACCTCCCCTCG
CCGGTATCGTGTCCTCGTTCACGCCCAACCCACCCCACCCCATTTCTCCGACCTCCGATGCCGGAGCGCCGCAACGTAGC
CGGAGATCCGCCGTACTGGTGATCCCCGGATAACAACGATGGACCGCCTCTTGCTGTCCCGCCCCCCGATGCCCACCCCC
GTCCGCGCCGCTGCCACGGCCGCAGATGGCGACCTCCTCGAGCTCGACGTCCTCTGGCCCGCCTCTTCAGCTCCCGGACT
CCTCGCCGCGCTTCCCGATGACGAGGCTAAGAAGAAGCAGAAGCGCGCGGGCGGCCCTGCCGTCCGATCCGCCGCCCGCG
CCGTCCCGGAGAAGGCCGCGTTGACCCCGTCGTCGGCGGCGAGGTCGGCTCCGGTGCGCATACCTTCGGATGCTGCGGCG
CGGAGAGGGAGGTGGTCCCACGTCGTCGGCGGCGGCGACGACGGGGACGCCATGGTCCCGCCGCACGAGATCGTCGCGCG
GCGCGCGGCAGCGCACAGCTCGGTGCTGGAGGGAGCCGGGAGGACGCTCAAGGGCCGCGACCTCCGCCGCGTACGCAACG
CCGTCCTGCGCCGCACCGGCTTCCTCGACTGAGAGGCGGAGGCGAGTCGCCTCGTCGCTTTCGCGATAAAGTTTTGACTT
CTGTTAATTCCCCCCTTTAGTTCCATCCGTTGCGTTTCCGGCAGTTTTGATTTCATTCCCCGATGGGAAGGGGATGAAAA
GTAAAGAGGTGAGGTGAGATGAGTGAGCGAGAATTACAACACGACAATAACAGTGCTGTTCCATTCCATCACATTATATA
TATGGAAATTTTGGCCATTATGTTT-GTTCAATCAGTTCGTATGTTGTGTTTCACGATGAAGTGAAAAATCTAGGCCTGG
G----------------------------TTCTATGCGAAATGCTGTTCCTGACGAATTATGTTGGGCTCCTAGCTTCTA
TAGTGCCAGATGCAGAGAATCAGGTCGAAGATGCATAATGAAATTCTTTGGTGGTTGCATTTTGGACGCCAAAGGATTGT
TGAATTGGCTATCTGCTCAGAGGCTTGTGCTTAGTCTACTATCGTTGATCATGTCTTCTTAG--------------ATTT
GGATCATAGCATGTTTCCATTTCTAGCTAATGGTGGAGAAAATTAAGCGCTATAATTGTTATCAGCATAGCAGTACTGGT
TACGTTGTAGTTCTGTGTCGTGGAAATTTTATTGCCGTTAAAACATTTGTATTGGTTATGGGTTATCAAATGTGGTAATA
AT------------------------------------------------------------------------------
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--------TAGTTGGTA---------------------------------------------------------------
-------------------TTTTGTTTCTGTTTCTA-GTTCTTCTTGTAAACTCATTCTCATGGAGAAACTTAGCACAAG
AGGCAAGTGTTATTTTTCAAATAGTGGTTGTGTTCTTGTGGAGATTAGAGATAAGTAACGCTTAGGTCAAAATGTTTTGT
TGACATCTGAATAATTTAATGTTCACATTTGATGTTCACTAAGAAATTATTAACGTGTGAGCATAAATTCAGATTCAATG
GAAATCCTTTATACTTGTGTTTGCTGGGCTTTCCTCTTAGTTTACTTCCTGTTGCAATAGTGATTTTTTACT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--------------
--S---S--S-------------------------SS-S--S----S---------------------S---S------S
-----S---SSS----------S---------------------S-----------SS----S-----------S-----
-SSS-----------S-S---------S-S--------------------------------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
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---------------------------------------S--------------------------------S------S
----------S---------------------------------------------------------------------
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---------------------S-----------------------------------------------------S----
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----------------------------S---------------------------------------------------
---------------------S----------------------------------------------------------
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---------------S------------S---------------------------------------------------
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--------------------------------------S----------------------S----------SS-SSSSS
SSSSSSSSSSSSS--------------S----------------------------------------------------
----------------------------------------------------------S---------------------
----------S---------------------------------------------S----S--------------S---
--------S------S------------------------------------S---------------------------
-------------------------S------------------------------------------------------
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----------------------------S---S---S--------------SSSS------S----------S-------
----------------------------------------------------------------------S---------
----------------------------------------------------------S---------------------
-----------------------------------------------S------------S--------------S----
-------------------------S----------------------------------------------
>forward_157
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---------------------------------------------------------GTGCACCCAAACCAATCCAC---
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>reverse_2649
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--------CCGAAGAAATTAGTGCCTGCC---------------------------------------------------
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