Multiple sequence alignment - TraesCS5A01G116000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G116000 chr5A 100.000 2447 0 0 1 2447 237369026 237371472 0.000000e+00 4519
1 TraesCS5A01G116000 chr2A 90.604 1905 137 11 291 2192 167218370 167220235 0.000000e+00 2488
2 TraesCS5A01G116000 chr2A 94.333 300 11 5 1 295 167211159 167211457 2.870000e-124 455
3 TraesCS5A01G116000 chr3B 87.903 496 59 1 962 1457 738754094 738754588 1.260000e-162 582
4 TraesCS5A01G116000 chr3D 85.629 501 69 3 962 1461 555797725 555798223 7.750000e-145 523
5 TraesCS5A01G116000 chr3D 84.444 270 36 4 1189 1455 555797999 555798265 6.710000e-66 261
6 TraesCS5A01G116000 chr3D 83.598 189 27 4 1269 1455 555797983 555798169 8.990000e-40 174
7 TraesCS5A01G116000 chr7A 82.857 595 71 13 408 973 401651890 401652482 2.810000e-139 505
8 TraesCS5A01G116000 chr7A 80.831 433 64 16 1695 2125 401652987 401653402 3.040000e-84 322
9 TraesCS5A01G116000 chr7A 80.835 407 52 12 1242 1644 401652497 401652881 1.840000e-76 296
10 TraesCS5A01G116000 chr7A 84.716 229 29 5 1726 1951 599116316 599116541 8.810000e-55 224
11 TraesCS5A01G116000 chr1B 82.471 599 75 18 408 978 286232632 286232036 4.700000e-137 497
12 TraesCS5A01G116000 chr1B 85.714 231 30 3 1726 1955 560827298 560827526 8.740000e-60 241
13 TraesCS5A01G116000 chr1B 82.879 257 32 8 1245 1500 286232013 286231768 1.140000e-53 220
14 TraesCS5A01G116000 chr6B 82.185 595 69 19 411 977 311211767 311211182 6.120000e-131 477
15 TraesCS5A01G116000 chr6B 80.282 426 57 14 1245 1666 311211158 311210756 1.840000e-76 296
16 TraesCS5A01G116000 chr7B 99.617 261 0 1 2187 2447 347334243 347333984 2.200000e-130 475
17 TraesCS5A01G116000 chr7B 95.038 262 11 2 2187 2447 658059907 658059647 6.300000e-111 411
18 TraesCS5A01G116000 chr7B 83.178 214 31 5 1726 1937 340257560 340257350 8.930000e-45 191
19 TraesCS5A01G116000 chr6D 81.488 578 82 20 411 977 211094827 211094264 3.710000e-123 451
20 TraesCS5A01G116000 chr5B 84.300 414 56 9 570 977 136742591 136742181 1.760000e-106 396
21 TraesCS5A01G116000 chr4B 91.506 259 19 2 2191 2447 628081521 628081264 1.080000e-93 353
22 TraesCS5A01G116000 chr3A 85.232 237 35 0 1221 1457 692720237 692720473 6.760000e-61 244
23 TraesCS5A01G116000 chr3A 81.148 244 42 3 1878 2118 553956584 553956826 2.480000e-45 193
24 TraesCS5A01G116000 chr3A 85.799 169 23 1 1679 1846 163066352 163066520 6.950000e-41 178
25 TraesCS5A01G116000 chr4A 85.350 157 22 1 1691 1846 563759418 563759262 7.000000e-36 161
26 TraesCS5A01G116000 chr1A 83.140 172 21 7 1784 1951 89121517 89121684 1.520000e-32 150
27 TraesCS5A01G116000 chr6A 87.273 110 12 2 1882 1989 392521930 392521821 9.190000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G116000 chr5A 237369026 237371472 2446 False 4519.000000 4519 100.000000 1 2447 1 chr5A.!!$F1 2446
1 TraesCS5A01G116000 chr2A 167218370 167220235 1865 False 2488.000000 2488 90.604000 291 2192 1 chr2A.!!$F2 1901
2 TraesCS5A01G116000 chr3D 555797725 555798265 540 False 319.333333 523 84.557000 962 1461 3 chr3D.!!$F1 499
3 TraesCS5A01G116000 chr7A 401651890 401653402 1512 False 374.333333 505 81.507667 408 2125 3 chr7A.!!$F2 1717
4 TraesCS5A01G116000 chr1B 286231768 286232632 864 True 358.500000 497 82.675000 408 1500 2 chr1B.!!$R1 1092
5 TraesCS5A01G116000 chr6B 311210756 311211767 1011 True 386.500000 477 81.233500 411 1666 2 chr6B.!!$R1 1255
6 TraesCS5A01G116000 chr6D 211094264 211094827 563 True 451.000000 451 81.488000 411 977 1 chr6D.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.093026 CGTTGAACTTCATCGCGACC 59.907 55.0 12.93 0.0 33.63 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 2368 0.095245 GATGATGGACACGTGCGTTG 59.905 55.0 17.22 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.468141 AAACATTTATCCTCTGAACTTTCCC 57.532 36.000 0.00 0.00 0.00 3.97
49 50 6.139679 ACATTTATCCTCTGAACTTTCCCA 57.860 37.500 0.00 0.00 0.00 4.37
50 51 6.552008 ACATTTATCCTCTGAACTTTCCCAA 58.448 36.000 0.00 0.00 0.00 4.12
51 52 6.434340 ACATTTATCCTCTGAACTTTCCCAAC 59.566 38.462 0.00 0.00 0.00 3.77
52 53 5.843019 TTATCCTCTGAACTTTCCCAACT 57.157 39.130 0.00 0.00 0.00 3.16
53 54 3.771577 TCCTCTGAACTTTCCCAACTC 57.228 47.619 0.00 0.00 0.00 3.01
54 55 3.318313 TCCTCTGAACTTTCCCAACTCT 58.682 45.455 0.00 0.00 0.00 3.24
55 56 4.489737 TCCTCTGAACTTTCCCAACTCTA 58.510 43.478 0.00 0.00 0.00 2.43
56 57 4.283722 TCCTCTGAACTTTCCCAACTCTAC 59.716 45.833 0.00 0.00 0.00 2.59
57 58 4.284746 CCTCTGAACTTTCCCAACTCTACT 59.715 45.833 0.00 0.00 0.00 2.57
58 59 5.221742 CCTCTGAACTTTCCCAACTCTACTT 60.222 44.000 0.00 0.00 0.00 2.24
59 60 6.248569 TCTGAACTTTCCCAACTCTACTTT 57.751 37.500 0.00 0.00 0.00 2.66
60 61 6.055588 TCTGAACTTTCCCAACTCTACTTTG 58.944 40.000 0.00 0.00 0.00 2.77
61 62 5.751586 TGAACTTTCCCAACTCTACTTTGT 58.248 37.500 0.00 0.00 0.00 2.83
62 63 6.184789 TGAACTTTCCCAACTCTACTTTGTT 58.815 36.000 0.00 0.00 0.00 2.83
63 64 6.661805 TGAACTTTCCCAACTCTACTTTGTTT 59.338 34.615 0.00 0.00 0.00 2.83
64 65 7.177744 TGAACTTTCCCAACTCTACTTTGTTTT 59.822 33.333 0.00 0.00 0.00 2.43
65 66 7.476540 ACTTTCCCAACTCTACTTTGTTTTT 57.523 32.000 0.00 0.00 0.00 1.94
87 88 7.631915 TTTTTAACTTCTATTTTTGCTCCGC 57.368 32.000 0.00 0.00 0.00 5.54
88 89 5.950758 TTAACTTCTATTTTTGCTCCGCA 57.049 34.783 0.00 0.00 36.47 5.69
89 90 4.425577 AACTTCTATTTTTGCTCCGCAG 57.574 40.909 0.00 0.00 40.61 5.18
90 91 3.674997 ACTTCTATTTTTGCTCCGCAGA 58.325 40.909 0.00 0.00 40.61 4.26
91 92 4.072131 ACTTCTATTTTTGCTCCGCAGAA 58.928 39.130 0.00 0.00 40.61 3.02
92 93 4.083271 ACTTCTATTTTTGCTCCGCAGAAC 60.083 41.667 0.00 0.00 40.61 3.01
93 94 3.674997 TCTATTTTTGCTCCGCAGAACT 58.325 40.909 0.00 0.00 40.61 3.01
94 95 2.997485 ATTTTTGCTCCGCAGAACTC 57.003 45.000 0.00 0.00 40.61 3.01
95 96 0.951558 TTTTTGCTCCGCAGAACTCC 59.048 50.000 0.00 0.00 40.61 3.85
96 97 0.108585 TTTTGCTCCGCAGAACTCCT 59.891 50.000 0.00 0.00 40.61 3.69
97 98 0.320771 TTTGCTCCGCAGAACTCCTC 60.321 55.000 0.00 0.00 40.61 3.71
98 99 1.188219 TTGCTCCGCAGAACTCCTCT 61.188 55.000 0.00 0.00 40.61 3.69
99 100 0.323451 TGCTCCGCAGAACTCCTCTA 60.323 55.000 0.00 0.00 33.32 2.43
100 101 0.818296 GCTCCGCAGAACTCCTCTAA 59.182 55.000 0.00 0.00 31.12 2.10
101 102 1.410882 GCTCCGCAGAACTCCTCTAAT 59.589 52.381 0.00 0.00 31.12 1.73
102 103 2.801342 GCTCCGCAGAACTCCTCTAATG 60.801 54.545 0.00 0.00 31.12 1.90
103 104 2.690497 CTCCGCAGAACTCCTCTAATGA 59.310 50.000 0.00 0.00 31.12 2.57
104 105 2.427453 TCCGCAGAACTCCTCTAATGAC 59.573 50.000 0.00 0.00 31.12 3.06
105 106 2.455032 CGCAGAACTCCTCTAATGACG 58.545 52.381 0.00 0.00 31.12 4.35
106 107 2.159366 CGCAGAACTCCTCTAATGACGT 60.159 50.000 0.00 0.00 31.12 4.34
107 108 3.673594 CGCAGAACTCCTCTAATGACGTT 60.674 47.826 0.00 0.00 31.12 3.99
108 109 4.246458 GCAGAACTCCTCTAATGACGTTT 58.754 43.478 0.00 0.00 31.12 3.60
109 110 4.691216 GCAGAACTCCTCTAATGACGTTTT 59.309 41.667 0.00 0.00 31.12 2.43
110 111 5.179555 GCAGAACTCCTCTAATGACGTTTTT 59.820 40.000 0.00 0.00 31.12 1.94
111 112 6.367969 GCAGAACTCCTCTAATGACGTTTTTA 59.632 38.462 0.00 0.00 31.12 1.52
112 113 7.412020 GCAGAACTCCTCTAATGACGTTTTTAG 60.412 40.741 10.57 10.57 31.12 1.85
113 114 6.590677 AGAACTCCTCTAATGACGTTTTTAGC 59.409 38.462 11.55 0.00 30.22 3.09
114 115 5.790593 ACTCCTCTAATGACGTTTTTAGCA 58.209 37.500 11.55 0.00 0.00 3.49
115 116 6.407202 ACTCCTCTAATGACGTTTTTAGCAT 58.593 36.000 11.55 0.00 0.00 3.79
116 117 7.553334 ACTCCTCTAATGACGTTTTTAGCATA 58.447 34.615 11.55 2.23 0.00 3.14
117 118 8.204836 ACTCCTCTAATGACGTTTTTAGCATAT 58.795 33.333 11.55 0.00 0.00 1.78
118 119 9.692749 CTCCTCTAATGACGTTTTTAGCATATA 57.307 33.333 11.55 0.00 0.00 0.86
119 120 9.692749 TCCTCTAATGACGTTTTTAGCATATAG 57.307 33.333 11.55 5.78 0.00 1.31
120 121 9.477484 CCTCTAATGACGTTTTTAGCATATAGT 57.523 33.333 11.55 0.00 0.00 2.12
137 138 8.748412 AGCATATAGTTTTAGTTGAAATTGGCA 58.252 29.630 0.00 0.00 0.00 4.92
138 139 9.533253 GCATATAGTTTTAGTTGAAATTGGCAT 57.467 29.630 0.00 0.00 0.00 4.40
143 144 6.868339 AGTTTTAGTTGAAATTGGCATACAGC 59.132 34.615 0.00 0.00 44.65 4.40
158 159 4.991687 GCATACAGCCATAGTAGAACTTCC 59.008 45.833 0.00 0.00 37.23 3.46
159 160 5.542779 CATACAGCCATAGTAGAACTTCCC 58.457 45.833 0.00 0.00 0.00 3.97
160 161 2.431057 ACAGCCATAGTAGAACTTCCCG 59.569 50.000 0.00 0.00 0.00 5.14
161 162 2.040178 AGCCATAGTAGAACTTCCCGG 58.960 52.381 0.00 0.00 0.00 5.73
162 163 1.761198 GCCATAGTAGAACTTCCCGGT 59.239 52.381 0.00 0.00 0.00 5.28
163 164 2.483188 GCCATAGTAGAACTTCCCGGTG 60.483 54.545 0.00 0.00 0.00 4.94
164 165 2.102588 CCATAGTAGAACTTCCCGGTGG 59.897 54.545 0.00 0.00 0.00 4.61
165 166 1.188863 TAGTAGAACTTCCCGGTGGC 58.811 55.000 0.00 0.00 0.00 5.01
166 167 0.544595 AGTAGAACTTCCCGGTGGCT 60.545 55.000 0.00 0.00 0.00 4.75
167 168 0.391263 GTAGAACTTCCCGGTGGCTG 60.391 60.000 0.00 0.00 0.00 4.85
168 169 1.550130 TAGAACTTCCCGGTGGCTGG 61.550 60.000 0.00 0.00 0.00 4.85
169 170 4.660938 AACTTCCCGGTGGCTGGC 62.661 66.667 0.00 0.00 0.00 4.85
174 175 3.542676 CCCGGTGGCTGGCGTATA 61.543 66.667 0.00 0.00 0.00 1.47
175 176 2.741092 CCGGTGGCTGGCGTATAT 59.259 61.111 0.00 0.00 0.00 0.86
176 177 1.667830 CCGGTGGCTGGCGTATATG 60.668 63.158 0.00 0.00 0.00 1.78
177 178 1.069090 CGGTGGCTGGCGTATATGT 59.931 57.895 0.00 0.00 0.00 2.29
178 179 0.531974 CGGTGGCTGGCGTATATGTT 60.532 55.000 0.00 0.00 0.00 2.71
179 180 1.226746 GGTGGCTGGCGTATATGTTC 58.773 55.000 0.00 0.00 0.00 3.18
180 181 0.859232 GTGGCTGGCGTATATGTTCG 59.141 55.000 0.00 0.00 0.00 3.95
181 182 0.462375 TGGCTGGCGTATATGTTCGT 59.538 50.000 0.00 0.00 0.00 3.85
182 183 1.134640 TGGCTGGCGTATATGTTCGTT 60.135 47.619 0.00 0.00 0.00 3.85
183 184 1.260561 GGCTGGCGTATATGTTCGTTG 59.739 52.381 0.00 0.00 0.00 4.10
184 185 2.198406 GCTGGCGTATATGTTCGTTGA 58.802 47.619 0.00 0.00 0.00 3.18
185 186 2.605818 GCTGGCGTATATGTTCGTTGAA 59.394 45.455 0.00 0.00 0.00 2.69
186 187 3.543460 GCTGGCGTATATGTTCGTTGAAC 60.543 47.826 2.80 2.80 42.26 3.18
187 188 3.852286 TGGCGTATATGTTCGTTGAACT 58.148 40.909 10.66 0.44 42.39 3.01
188 189 4.247258 TGGCGTATATGTTCGTTGAACTT 58.753 39.130 10.66 7.17 42.39 2.66
189 190 4.327898 TGGCGTATATGTTCGTTGAACTTC 59.672 41.667 10.66 0.00 42.39 3.01
190 191 4.327898 GGCGTATATGTTCGTTGAACTTCA 59.672 41.667 10.66 0.00 42.39 3.02
191 192 5.006358 GGCGTATATGTTCGTTGAACTTCAT 59.994 40.000 10.66 0.00 42.39 2.57
192 193 6.120812 GCGTATATGTTCGTTGAACTTCATC 58.879 40.000 10.66 0.00 42.39 2.92
193 194 6.337152 CGTATATGTTCGTTGAACTTCATCG 58.663 40.000 13.76 13.76 42.39 3.84
194 195 2.941891 TGTTCGTTGAACTTCATCGC 57.058 45.000 14.75 5.53 42.39 4.58
195 196 1.191425 TGTTCGTTGAACTTCATCGCG 59.809 47.619 14.75 0.00 42.39 5.87
196 197 1.454276 GTTCGTTGAACTTCATCGCGA 59.546 47.619 13.09 13.09 38.90 5.87
197 198 1.057636 TCGTTGAACTTCATCGCGAC 58.942 50.000 12.93 0.00 38.90 5.19
198 199 0.093026 CGTTGAACTTCATCGCGACC 59.907 55.000 12.93 0.00 33.63 4.79
199 200 0.093026 GTTGAACTTCATCGCGACCG 59.907 55.000 12.93 5.87 0.00 4.79
208 209 4.450122 TCGCGACCGACACGTAGC 62.450 66.667 3.71 0.00 38.82 3.58
230 231 6.812879 GCCGTAATACCTGGCTTAATTATT 57.187 37.500 0.00 0.00 45.40 1.40
231 232 7.210718 GCCGTAATACCTGGCTTAATTATTT 57.789 36.000 0.00 0.00 45.40 1.40
232 233 7.654568 GCCGTAATACCTGGCTTAATTATTTT 58.345 34.615 0.00 0.00 45.40 1.82
233 234 8.139350 GCCGTAATACCTGGCTTAATTATTTTT 58.861 33.333 0.00 0.00 45.40 1.94
252 253 5.959583 TTTTTGAGGGGTTGGTGTATTTT 57.040 34.783 0.00 0.00 0.00 1.82
253 254 5.959583 TTTTGAGGGGTTGGTGTATTTTT 57.040 34.783 0.00 0.00 0.00 1.94
254 255 4.946478 TTGAGGGGTTGGTGTATTTTTG 57.054 40.909 0.00 0.00 0.00 2.44
255 256 3.917300 TGAGGGGTTGGTGTATTTTTGT 58.083 40.909 0.00 0.00 0.00 2.83
256 257 5.063017 TGAGGGGTTGGTGTATTTTTGTA 57.937 39.130 0.00 0.00 0.00 2.41
257 258 5.074115 TGAGGGGTTGGTGTATTTTTGTAG 58.926 41.667 0.00 0.00 0.00 2.74
258 259 5.069518 AGGGGTTGGTGTATTTTTGTAGT 57.930 39.130 0.00 0.00 0.00 2.73
259 260 6.183361 TGAGGGGTTGGTGTATTTTTGTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
260 261 6.005823 AGGGGTTGGTGTATTTTTGTAGTAC 58.994 40.000 0.00 0.00 0.00 2.73
261 262 5.769162 GGGGTTGGTGTATTTTTGTAGTACA 59.231 40.000 0.00 0.00 0.00 2.90
262 263 6.264970 GGGGTTGGTGTATTTTTGTAGTACAA 59.735 38.462 11.75 11.75 36.11 2.41
263 264 7.140705 GGGTTGGTGTATTTTTGTAGTACAAC 58.859 38.462 15.31 5.25 37.90 3.32
264 265 7.013559 GGGTTGGTGTATTTTTGTAGTACAACT 59.986 37.037 15.31 6.26 37.90 3.16
265 266 8.407832 GGTTGGTGTATTTTTGTAGTACAACTT 58.592 33.333 15.31 6.09 37.90 2.66
266 267 9.442033 GTTGGTGTATTTTTGTAGTACAACTTC 57.558 33.333 15.31 5.78 37.90 3.01
267 268 8.734218 TGGTGTATTTTTGTAGTACAACTTCA 57.266 30.769 15.31 7.99 37.90 3.02
268 269 9.344772 TGGTGTATTTTTGTAGTACAACTTCAT 57.655 29.630 15.31 7.68 37.90 2.57
283 284 5.905903 CAACTTCATTGTACGTCTCTGAAC 58.094 41.667 0.00 0.00 33.20 3.18
284 285 5.455056 ACTTCATTGTACGTCTCTGAACT 57.545 39.130 0.00 0.00 0.00 3.01
285 286 5.844004 ACTTCATTGTACGTCTCTGAACTT 58.156 37.500 0.00 0.00 0.00 2.66
286 287 5.692204 ACTTCATTGTACGTCTCTGAACTTG 59.308 40.000 0.00 0.00 0.00 3.16
287 288 4.556233 TCATTGTACGTCTCTGAACTTGG 58.444 43.478 0.00 0.00 0.00 3.61
288 289 4.038763 TCATTGTACGTCTCTGAACTTGGT 59.961 41.667 0.00 0.00 0.00 3.67
289 290 3.364889 TGTACGTCTCTGAACTTGGTG 57.635 47.619 0.00 0.00 0.00 4.17
300 301 6.315642 TCTCTGAACTTGGTGTATAGACGTAG 59.684 42.308 0.00 0.00 0.00 3.51
343 344 2.777114 TCAGACATGCTAAATGGGCCTA 59.223 45.455 4.53 0.00 0.00 3.93
386 387 6.127054 TGGTTATCCAACATTTTTGGTCAACA 60.127 34.615 15.98 4.73 41.25 3.33
392 393 5.234757 CCAACATTTTTGGTCAACACATCAG 59.765 40.000 0.00 0.00 34.92 2.90
578 596 1.129624 GACACACGAACACACAAGCAA 59.870 47.619 0.00 0.00 0.00 3.91
685 705 7.008628 GGCATAATCTTGTGATTTTGAACTTCG 59.991 37.037 11.41 0.00 41.18 3.79
686 706 7.538678 GCATAATCTTGTGATTTTGAACTTCGT 59.461 33.333 11.41 0.00 41.18 3.85
722 743 8.597167 TCATTGAACGGATGGATATCTCTTTAT 58.403 33.333 2.05 0.00 33.68 1.40
837 866 3.389329 TCTCTCATTCAGTTATCTGGCCC 59.611 47.826 0.00 0.00 41.59 5.80
839 868 3.135348 TCTCATTCAGTTATCTGGCCCAG 59.865 47.826 3.69 3.69 41.59 4.45
900 929 3.838244 TGAGCAGAACTTTGGTACACT 57.162 42.857 0.00 0.00 39.29 3.55
910 939 6.672657 AGAACTTTGGTACACTATCATACCCT 59.327 38.462 0.00 0.00 40.25 4.34
978 1008 4.753233 CAGCTAGAGTGCTTACATCAACT 58.247 43.478 0.00 0.00 41.98 3.16
1057 1087 1.130561 GCGGCACAAGAATGGTTACTC 59.869 52.381 0.00 0.00 0.00 2.59
1084 1114 4.604156 ACATCAGAGTACCAGATGTCTGA 58.396 43.478 15.65 13.63 46.81 3.27
1095 1125 3.553511 CCAGATGTCTGAGCGTAATGTTC 59.446 47.826 11.47 0.00 46.59 3.18
1109 1140 2.665185 GTTCCGCCAGCGACACTT 60.665 61.111 14.67 0.00 42.83 3.16
1231 1262 0.679640 TCCCGTGGCATCAAATGACC 60.680 55.000 0.00 0.00 37.55 4.02
1240 1276 2.710377 CATCAAATGACCGGAGTTCCA 58.290 47.619 9.46 0.00 35.14 3.53
1243 1322 1.003118 CAAATGACCGGAGTTCCAGGA 59.997 52.381 9.46 0.00 34.97 3.86
1306 1385 1.377333 GGGCAGCAGAGTTACACCC 60.377 63.158 0.00 0.00 0.00 4.61
1346 1425 1.552799 TTGAGATCCGGGCAGCAAGA 61.553 55.000 0.00 0.00 0.00 3.02
1371 1455 1.079127 TACTGCCGAGCCTTCAAGC 60.079 57.895 0.00 0.00 0.00 4.01
1379 1463 0.676151 GAGCCTTCAAGCCAGTGGAG 60.676 60.000 15.20 0.00 0.00 3.86
1381 1465 1.377994 CCTTCAAGCCAGTGGAGCT 59.622 57.895 15.20 0.00 44.19 4.09
1382 1466 0.676151 CCTTCAAGCCAGTGGAGCTC 60.676 60.000 15.20 4.71 40.49 4.09
1383 1467 1.004560 TTCAAGCCAGTGGAGCTCG 60.005 57.895 15.20 0.00 40.49 5.03
1384 1468 2.435586 CAAGCCAGTGGAGCTCGG 60.436 66.667 15.20 4.19 40.49 4.63
1446 1545 2.683572 TCCGAGCAGCAGGGCTAA 60.684 61.111 7.04 0.00 45.99 3.09
1464 1563 0.038744 AAACTCCAGCTGGACCATGG 59.961 55.000 32.00 22.84 39.78 3.66
1512 1611 0.667792 GGTCGAATCTAGCCATCGCC 60.668 60.000 0.00 7.59 36.56 5.54
1519 1618 0.684479 TCTAGCCATCGCCACAGTCT 60.684 55.000 0.00 0.00 34.57 3.24
1526 1625 1.032657 ATCGCCACAGTCTAGACGCT 61.033 55.000 17.07 3.44 36.20 5.07
1527 1626 1.213013 CGCCACAGTCTAGACGCTT 59.787 57.895 17.07 2.80 36.20 4.68
1552 1651 4.314440 GTGCTCTGGTGGTCGCCA 62.314 66.667 3.07 3.07 36.97 5.69
1573 1672 4.758674 CCATCAGTATCCATTGGTCATCAC 59.241 45.833 1.86 0.00 0.00 3.06
1662 1776 4.080072 GGGTGAGGAATGAAGAAGGAAGAT 60.080 45.833 0.00 0.00 0.00 2.40
1668 1782 5.193325 AGGAATGAAGAAGGAAGATGGACAT 59.807 40.000 0.00 0.00 0.00 3.06
1675 1789 0.462581 GGAAGATGGACATCGCTGCA 60.463 55.000 6.65 0.00 42.48 4.41
1689 1843 2.283821 TGCATGGGAAGTTGGGCC 60.284 61.111 0.00 0.00 0.00 5.80
1692 1846 3.978193 ATGGGAAGTTGGGCCGCA 61.978 61.111 0.00 0.00 0.00 5.69
1693 1847 3.521765 ATGGGAAGTTGGGCCGCAA 62.522 57.895 0.00 0.00 0.00 4.85
1780 1934 1.592223 GTGTGGGAGAGGTCTTCCG 59.408 63.158 0.00 0.00 45.01 4.30
1815 1970 2.359169 CCGTTGCCTCCTCCAGCTA 61.359 63.158 0.00 0.00 0.00 3.32
2192 2363 1.798223 CTGAAGTTCGGAAACATCGCA 59.202 47.619 5.73 0.00 36.19 5.10
2193 2364 1.529438 TGAAGTTCGGAAACATCGCAC 59.471 47.619 0.00 0.00 36.19 5.34
2194 2365 0.511221 AAGTTCGGAAACATCGCACG 59.489 50.000 0.00 0.00 37.88 5.34
2195 2366 0.599204 AGTTCGGAAACATCGCACGT 60.599 50.000 0.00 0.00 37.88 4.49
2196 2367 0.450482 GTTCGGAAACATCGCACGTG 60.450 55.000 12.28 12.28 35.36 4.49
2197 2368 2.165362 TTCGGAAACATCGCACGTGC 62.165 55.000 30.42 30.42 37.78 5.34
2198 2369 2.942879 GGAAACATCGCACGTGCA 59.057 55.556 37.03 24.97 42.21 4.57
2199 2370 1.281353 GGAAACATCGCACGTGCAA 59.719 52.632 37.03 23.76 42.21 4.08
2200 2371 0.996727 GGAAACATCGCACGTGCAAC 60.997 55.000 37.03 19.18 42.21 4.17
2212 2383 2.590291 TGCAACGCACGTGTCCAT 60.590 55.556 18.38 0.00 31.71 3.41
2213 2384 2.173382 GCAACGCACGTGTCCATC 59.827 61.111 18.38 0.00 0.00 3.51
2214 2385 2.603247 GCAACGCACGTGTCCATCA 61.603 57.895 18.38 0.00 0.00 3.07
2215 2386 1.911293 GCAACGCACGTGTCCATCAT 61.911 55.000 18.38 0.00 0.00 2.45
2216 2387 0.095245 CAACGCACGTGTCCATCATC 59.905 55.000 18.38 0.00 0.00 2.92
2217 2388 0.320334 AACGCACGTGTCCATCATCA 60.320 50.000 18.38 0.00 0.00 3.07
2218 2389 0.320334 ACGCACGTGTCCATCATCAA 60.320 50.000 18.38 0.00 0.00 2.57
2219 2390 0.795698 CGCACGTGTCCATCATCAAA 59.204 50.000 18.38 0.00 0.00 2.69
2220 2391 1.398041 CGCACGTGTCCATCATCAAAT 59.602 47.619 18.38 0.00 0.00 2.32
2221 2392 2.607180 CGCACGTGTCCATCATCAAATA 59.393 45.455 18.38 0.00 0.00 1.40
2222 2393 3.248363 CGCACGTGTCCATCATCAAATAT 59.752 43.478 18.38 0.00 0.00 1.28
2223 2394 4.447389 CGCACGTGTCCATCATCAAATATA 59.553 41.667 18.38 0.00 0.00 0.86
2224 2395 5.050431 CGCACGTGTCCATCATCAAATATAA 60.050 40.000 18.38 0.00 0.00 0.98
2225 2396 6.510960 CGCACGTGTCCATCATCAAATATAAA 60.511 38.462 18.38 0.00 0.00 1.40
2226 2397 7.362662 GCACGTGTCCATCATCAAATATAAAT 58.637 34.615 18.38 0.00 0.00 1.40
2227 2398 7.324375 GCACGTGTCCATCATCAAATATAAATG 59.676 37.037 18.38 0.00 0.00 2.32
2228 2399 8.344831 CACGTGTCCATCATCAAATATAAATGT 58.655 33.333 7.58 0.00 0.00 2.71
2229 2400 8.344831 ACGTGTCCATCATCAAATATAAATGTG 58.655 33.333 0.00 0.00 0.00 3.21
2230 2401 8.558700 CGTGTCCATCATCAAATATAAATGTGA 58.441 33.333 0.00 0.00 33.77 3.58
2231 2402 9.888878 GTGTCCATCATCAAATATAAATGTGAG 57.111 33.333 0.00 0.00 32.73 3.51
2232 2403 9.631257 TGTCCATCATCAAATATAAATGTGAGT 57.369 29.630 0.00 0.00 32.73 3.41
2249 2420 3.701664 TGAGTATGCTCAGAGGACTTGA 58.298 45.455 9.69 0.00 45.94 3.02
2250 2421 4.089361 TGAGTATGCTCAGAGGACTTGAA 58.911 43.478 9.69 0.00 45.94 2.69
2251 2422 4.528206 TGAGTATGCTCAGAGGACTTGAAA 59.472 41.667 9.69 0.00 45.94 2.69
2252 2423 5.188555 TGAGTATGCTCAGAGGACTTGAAAT 59.811 40.000 9.69 0.00 45.94 2.17
2253 2424 6.059787 AGTATGCTCAGAGGACTTGAAATT 57.940 37.500 0.00 0.00 0.00 1.82
2254 2425 6.479884 AGTATGCTCAGAGGACTTGAAATTT 58.520 36.000 0.00 0.00 0.00 1.82
2255 2426 7.624549 AGTATGCTCAGAGGACTTGAAATTTA 58.375 34.615 0.00 0.00 0.00 1.40
2256 2427 8.270744 AGTATGCTCAGAGGACTTGAAATTTAT 58.729 33.333 0.00 0.00 0.00 1.40
2257 2428 9.547753 GTATGCTCAGAGGACTTGAAATTTATA 57.452 33.333 0.00 0.00 0.00 0.98
2259 2430 9.638176 ATGCTCAGAGGACTTGAAATTTATAAT 57.362 29.630 0.00 0.00 0.00 1.28
2260 2431 9.113838 TGCTCAGAGGACTTGAAATTTATAATC 57.886 33.333 0.00 0.00 0.00 1.75
2261 2432 8.563732 GCTCAGAGGACTTGAAATTTATAATCC 58.436 37.037 0.00 0.00 0.00 3.01
2262 2433 9.618890 CTCAGAGGACTTGAAATTTATAATCCA 57.381 33.333 11.55 0.00 0.00 3.41
2263 2434 9.618890 TCAGAGGACTTGAAATTTATAATCCAG 57.381 33.333 11.55 4.14 0.00 3.86
2264 2435 9.618890 CAGAGGACTTGAAATTTATAATCCAGA 57.381 33.333 11.55 0.00 0.00 3.86
2265 2436 9.620259 AGAGGACTTGAAATTTATAATCCAGAC 57.380 33.333 11.55 5.14 0.00 3.51
2266 2437 8.753497 AGGACTTGAAATTTATAATCCAGACC 57.247 34.615 11.55 2.65 0.00 3.85
2267 2438 7.780271 AGGACTTGAAATTTATAATCCAGACCC 59.220 37.037 11.55 0.00 0.00 4.46
2268 2439 7.780271 GGACTTGAAATTTATAATCCAGACCCT 59.220 37.037 0.00 0.00 0.00 4.34
2269 2440 9.847224 GACTTGAAATTTATAATCCAGACCCTA 57.153 33.333 0.00 0.00 0.00 3.53
2270 2441 9.853177 ACTTGAAATTTATAATCCAGACCCTAG 57.147 33.333 0.00 0.00 0.00 3.02
2271 2442 9.853177 CTTGAAATTTATAATCCAGACCCTAGT 57.147 33.333 0.00 0.00 0.00 2.57
2332 2503 8.659925 ACACATATTCTAGAATGAGCTTTCTG 57.340 34.615 25.22 13.64 36.63 3.02
2333 2504 8.481314 ACACATATTCTAGAATGAGCTTTCTGA 58.519 33.333 25.22 4.20 36.63 3.27
2334 2505 8.980610 CACATATTCTAGAATGAGCTTTCTGAG 58.019 37.037 25.22 5.14 36.63 3.35
2335 2506 8.922237 ACATATTCTAGAATGAGCTTTCTGAGA 58.078 33.333 25.22 3.52 36.63 3.27
2336 2507 9.932207 CATATTCTAGAATGAGCTTTCTGAGAT 57.068 33.333 25.22 5.62 36.63 2.75
2372 2543 8.786826 TTGAACATACGAATCATAAAGTTCCT 57.213 30.769 0.00 0.00 34.73 3.36
2373 2544 8.786826 TGAACATACGAATCATAAAGTTCCTT 57.213 30.769 0.00 0.00 34.73 3.36
2374 2545 9.226606 TGAACATACGAATCATAAAGTTCCTTT 57.773 29.630 0.00 0.00 37.46 3.11
2375 2546 9.704098 GAACATACGAATCATAAAGTTCCTTTC 57.296 33.333 0.00 0.00 35.21 2.62
2376 2547 8.786826 ACATACGAATCATAAAGTTCCTTTCA 57.213 30.769 0.00 0.00 35.21 2.69
2377 2548 9.396022 ACATACGAATCATAAAGTTCCTTTCAT 57.604 29.630 0.00 0.00 35.21 2.57
2404 2575 7.671495 AATGATAAAAACATTCAGCAAACCC 57.329 32.000 0.00 0.00 33.46 4.11
2405 2576 5.546526 TGATAAAAACATTCAGCAAACCCC 58.453 37.500 0.00 0.00 0.00 4.95
2406 2577 3.922171 AAAAACATTCAGCAAACCCCA 57.078 38.095 0.00 0.00 0.00 4.96
2407 2578 4.436113 AAAAACATTCAGCAAACCCCAT 57.564 36.364 0.00 0.00 0.00 4.00
2408 2579 3.405823 AAACATTCAGCAAACCCCATG 57.594 42.857 0.00 0.00 0.00 3.66
2409 2580 0.609662 ACATTCAGCAAACCCCATGC 59.390 50.000 0.00 0.00 44.15 4.06
2410 2581 0.108041 CATTCAGCAAACCCCATGCC 60.108 55.000 0.00 0.00 44.91 4.40
2411 2582 0.544833 ATTCAGCAAACCCCATGCCA 60.545 50.000 0.00 0.00 44.91 4.92
2412 2583 1.186917 TTCAGCAAACCCCATGCCAG 61.187 55.000 0.00 0.00 44.91 4.85
2413 2584 2.284112 AGCAAACCCCATGCCAGG 60.284 61.111 0.00 0.00 44.91 4.45
2414 2585 2.604382 GCAAACCCCATGCCAGGT 60.604 61.111 0.00 0.00 37.85 4.00
2415 2586 2.946346 GCAAACCCCATGCCAGGTG 61.946 63.158 1.50 0.00 37.85 4.00
2416 2587 1.533753 CAAACCCCATGCCAGGTGT 60.534 57.895 1.50 0.00 36.19 4.16
2417 2588 0.251564 CAAACCCCATGCCAGGTGTA 60.252 55.000 1.50 0.00 36.19 2.90
2418 2589 0.709992 AAACCCCATGCCAGGTGTAT 59.290 50.000 1.50 0.00 36.19 2.29
2419 2590 0.033208 AACCCCATGCCAGGTGTATG 60.033 55.000 1.50 0.00 36.19 2.39
2420 2591 1.214305 ACCCCATGCCAGGTGTATGT 61.214 55.000 0.00 0.00 35.49 2.29
2421 2592 0.466189 CCCCATGCCAGGTGTATGTC 60.466 60.000 0.00 0.00 35.49 3.06
2422 2593 0.255604 CCCATGCCAGGTGTATGTCA 59.744 55.000 0.00 0.00 35.49 3.58
2423 2594 1.340893 CCCATGCCAGGTGTATGTCAA 60.341 52.381 0.00 0.00 35.49 3.18
2424 2595 2.019249 CCATGCCAGGTGTATGTCAAG 58.981 52.381 0.00 0.00 35.49 3.02
2425 2596 2.618816 CCATGCCAGGTGTATGTCAAGT 60.619 50.000 0.00 0.00 35.49 3.16
2426 2597 2.183478 TGCCAGGTGTATGTCAAGTG 57.817 50.000 0.00 0.00 0.00 3.16
2427 2598 0.804989 GCCAGGTGTATGTCAAGTGC 59.195 55.000 0.00 0.00 0.00 4.40
2428 2599 1.881925 GCCAGGTGTATGTCAAGTGCA 60.882 52.381 0.00 0.00 0.00 4.57
2429 2600 1.806542 CCAGGTGTATGTCAAGTGCAC 59.193 52.381 9.40 9.40 0.00 4.57
2431 2602 2.185004 GGTGTATGTCAAGTGCACCT 57.815 50.000 14.63 0.00 45.40 4.00
2432 2603 2.076863 GGTGTATGTCAAGTGCACCTC 58.923 52.381 14.63 2.20 45.40 3.85
2433 2604 2.549992 GGTGTATGTCAAGTGCACCTCA 60.550 50.000 14.63 8.21 45.40 3.86
2434 2605 2.480419 GTGTATGTCAAGTGCACCTCAC 59.520 50.000 14.63 7.97 45.98 3.51
2435 2606 2.076863 GTATGTCAAGTGCACCTCACC 58.923 52.381 14.63 0.00 46.81 4.02
2436 2607 0.767375 ATGTCAAGTGCACCTCACCT 59.233 50.000 14.63 0.00 46.81 4.00
2437 2608 1.419381 TGTCAAGTGCACCTCACCTA 58.581 50.000 14.63 0.00 46.81 3.08
2438 2609 1.344438 TGTCAAGTGCACCTCACCTAG 59.656 52.381 14.63 0.00 46.81 3.02
2439 2610 1.344763 GTCAAGTGCACCTCACCTAGT 59.655 52.381 14.63 0.00 46.81 2.57
2440 2611 2.047061 TCAAGTGCACCTCACCTAGTT 58.953 47.619 14.63 0.00 46.81 2.24
2441 2612 2.438021 TCAAGTGCACCTCACCTAGTTT 59.562 45.455 14.63 0.00 46.81 2.66
2442 2613 3.118038 TCAAGTGCACCTCACCTAGTTTT 60.118 43.478 14.63 0.00 46.81 2.43
2443 2614 4.101898 TCAAGTGCACCTCACCTAGTTTTA 59.898 41.667 14.63 0.00 46.81 1.52
2444 2615 4.910458 AGTGCACCTCACCTAGTTTTAT 57.090 40.909 14.63 0.00 46.81 1.40
2445 2616 6.014070 TCAAGTGCACCTCACCTAGTTTTATA 60.014 38.462 14.63 0.00 46.81 0.98
2446 2617 5.731591 AGTGCACCTCACCTAGTTTTATAC 58.268 41.667 14.63 0.00 46.81 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.020731 GGGAAAGTTCAGAGGATAAATGTTTAA 57.979 33.333 0.00 0.00 0.00 1.52
23 24 8.167392 TGGGAAAGTTCAGAGGATAAATGTTTA 58.833 33.333 0.00 0.00 0.00 2.01
24 25 7.010160 TGGGAAAGTTCAGAGGATAAATGTTT 58.990 34.615 0.00 0.00 0.00 2.83
25 26 6.552008 TGGGAAAGTTCAGAGGATAAATGTT 58.448 36.000 0.00 0.00 0.00 2.71
26 27 6.139679 TGGGAAAGTTCAGAGGATAAATGT 57.860 37.500 0.00 0.00 0.00 2.71
27 28 6.660949 AGTTGGGAAAGTTCAGAGGATAAATG 59.339 38.462 0.00 0.00 0.00 2.32
28 29 6.794534 AGTTGGGAAAGTTCAGAGGATAAAT 58.205 36.000 0.00 0.00 0.00 1.40
29 30 6.044404 AGAGTTGGGAAAGTTCAGAGGATAAA 59.956 38.462 0.00 0.00 0.00 1.40
30 31 5.548056 AGAGTTGGGAAAGTTCAGAGGATAA 59.452 40.000 0.00 0.00 0.00 1.75
31 32 5.094387 AGAGTTGGGAAAGTTCAGAGGATA 58.906 41.667 0.00 0.00 0.00 2.59
32 33 3.913163 AGAGTTGGGAAAGTTCAGAGGAT 59.087 43.478 0.00 0.00 0.00 3.24
33 34 3.318313 AGAGTTGGGAAAGTTCAGAGGA 58.682 45.455 0.00 0.00 0.00 3.71
34 35 3.778954 AGAGTTGGGAAAGTTCAGAGG 57.221 47.619 0.00 0.00 0.00 3.69
35 36 5.476091 AGTAGAGTTGGGAAAGTTCAGAG 57.524 43.478 0.00 0.00 0.00 3.35
36 37 5.888982 AAGTAGAGTTGGGAAAGTTCAGA 57.111 39.130 0.00 0.00 0.00 3.27
37 38 5.823045 ACAAAGTAGAGTTGGGAAAGTTCAG 59.177 40.000 0.00 0.00 0.00 3.02
38 39 5.751586 ACAAAGTAGAGTTGGGAAAGTTCA 58.248 37.500 0.00 0.00 0.00 3.18
39 40 6.694877 AACAAAGTAGAGTTGGGAAAGTTC 57.305 37.500 0.00 0.00 0.00 3.01
40 41 7.476540 AAAACAAAGTAGAGTTGGGAAAGTT 57.523 32.000 0.00 0.00 0.00 2.66
41 42 7.476540 AAAAACAAAGTAGAGTTGGGAAAGT 57.523 32.000 0.00 0.00 0.00 2.66
82 83 2.690497 TCATTAGAGGAGTTCTGCGGAG 59.310 50.000 0.00 0.00 36.61 4.63
83 84 2.427453 GTCATTAGAGGAGTTCTGCGGA 59.573 50.000 0.00 0.00 36.61 5.54
84 85 2.796383 CGTCATTAGAGGAGTTCTGCGG 60.796 54.545 0.00 0.00 36.61 5.69
85 86 2.159366 ACGTCATTAGAGGAGTTCTGCG 60.159 50.000 0.00 0.00 36.61 5.18
86 87 3.512033 ACGTCATTAGAGGAGTTCTGC 57.488 47.619 0.00 0.00 36.61 4.26
87 88 6.787085 AAAAACGTCATTAGAGGAGTTCTG 57.213 37.500 0.00 0.00 36.61 3.02
88 89 6.590677 GCTAAAAACGTCATTAGAGGAGTTCT 59.409 38.462 19.07 0.00 40.06 3.01
89 90 6.367969 TGCTAAAAACGTCATTAGAGGAGTTC 59.632 38.462 19.07 5.31 32.10 3.01
90 91 6.228258 TGCTAAAAACGTCATTAGAGGAGTT 58.772 36.000 19.07 0.00 32.10 3.01
91 92 5.790593 TGCTAAAAACGTCATTAGAGGAGT 58.209 37.500 19.07 0.00 32.10 3.85
92 93 6.910536 ATGCTAAAAACGTCATTAGAGGAG 57.089 37.500 19.07 1.64 32.10 3.69
93 94 9.692749 CTATATGCTAAAAACGTCATTAGAGGA 57.307 33.333 19.07 7.96 32.10 3.71
94 95 9.477484 ACTATATGCTAAAAACGTCATTAGAGG 57.523 33.333 19.07 7.93 32.10 3.69
111 112 8.748412 TGCCAATTTCAACTAAAACTATATGCT 58.252 29.630 0.00 0.00 0.00 3.79
112 113 8.925161 TGCCAATTTCAACTAAAACTATATGC 57.075 30.769 0.00 0.00 0.00 3.14
117 118 8.026607 GCTGTATGCCAATTTCAACTAAAACTA 58.973 33.333 0.00 0.00 35.15 2.24
118 119 6.868339 GCTGTATGCCAATTTCAACTAAAACT 59.132 34.615 0.00 0.00 35.15 2.66
119 120 7.049140 GCTGTATGCCAATTTCAACTAAAAC 57.951 36.000 0.00 0.00 35.15 2.43
135 136 4.991687 GGAAGTTCTACTATGGCTGTATGC 59.008 45.833 2.25 0.00 41.94 3.14
136 137 5.542779 GGGAAGTTCTACTATGGCTGTATG 58.457 45.833 2.25 0.00 0.00 2.39
137 138 4.281182 CGGGAAGTTCTACTATGGCTGTAT 59.719 45.833 2.25 0.00 0.00 2.29
138 139 3.635373 CGGGAAGTTCTACTATGGCTGTA 59.365 47.826 2.25 0.00 0.00 2.74
139 140 2.431057 CGGGAAGTTCTACTATGGCTGT 59.569 50.000 2.25 0.00 0.00 4.40
140 141 2.224066 CCGGGAAGTTCTACTATGGCTG 60.224 54.545 2.25 0.00 0.00 4.85
141 142 2.040178 CCGGGAAGTTCTACTATGGCT 58.960 52.381 2.25 0.00 0.00 4.75
142 143 1.761198 ACCGGGAAGTTCTACTATGGC 59.239 52.381 6.32 0.00 0.00 4.40
143 144 2.102588 CCACCGGGAAGTTCTACTATGG 59.897 54.545 6.32 0.00 35.59 2.74
144 145 2.483188 GCCACCGGGAAGTTCTACTATG 60.483 54.545 6.32 0.00 35.59 2.23
145 146 1.761198 GCCACCGGGAAGTTCTACTAT 59.239 52.381 6.32 0.00 35.59 2.12
146 147 1.188863 GCCACCGGGAAGTTCTACTA 58.811 55.000 6.32 0.00 35.59 1.82
147 148 0.544595 AGCCACCGGGAAGTTCTACT 60.545 55.000 6.32 0.00 35.59 2.57
148 149 0.391263 CAGCCACCGGGAAGTTCTAC 60.391 60.000 6.32 0.00 35.59 2.59
149 150 1.550130 CCAGCCACCGGGAAGTTCTA 61.550 60.000 6.32 0.00 35.59 2.10
150 151 2.750350 CAGCCACCGGGAAGTTCT 59.250 61.111 6.32 0.00 35.59 3.01
151 152 2.359975 CCAGCCACCGGGAAGTTC 60.360 66.667 6.32 0.00 35.59 3.01
152 153 4.660938 GCCAGCCACCGGGAAGTT 62.661 66.667 6.32 0.00 35.59 2.66
157 158 2.879233 ATATACGCCAGCCACCGGG 61.879 63.158 6.32 0.00 37.18 5.73
158 159 1.667830 CATATACGCCAGCCACCGG 60.668 63.158 0.00 0.00 0.00 5.28
159 160 0.531974 AACATATACGCCAGCCACCG 60.532 55.000 0.00 0.00 0.00 4.94
160 161 1.226746 GAACATATACGCCAGCCACC 58.773 55.000 0.00 0.00 0.00 4.61
161 162 0.859232 CGAACATATACGCCAGCCAC 59.141 55.000 0.00 0.00 0.00 5.01
162 163 0.462375 ACGAACATATACGCCAGCCA 59.538 50.000 0.00 0.00 0.00 4.75
163 164 1.260561 CAACGAACATATACGCCAGCC 59.739 52.381 0.00 0.00 0.00 4.85
164 165 2.198406 TCAACGAACATATACGCCAGC 58.802 47.619 0.00 0.00 0.00 4.85
165 166 3.863424 AGTTCAACGAACATATACGCCAG 59.137 43.478 9.36 0.00 44.11 4.85
166 167 3.852286 AGTTCAACGAACATATACGCCA 58.148 40.909 9.36 0.00 44.11 5.69
167 168 4.327898 TGAAGTTCAACGAACATATACGCC 59.672 41.667 2.20 0.00 44.11 5.68
168 169 5.444586 TGAAGTTCAACGAACATATACGC 57.555 39.130 2.20 0.00 44.11 4.42
169 170 6.337152 CGATGAAGTTCAACGAACATATACG 58.663 40.000 26.01 7.33 43.94 3.06
170 171 6.120812 GCGATGAAGTTCAACGAACATATAC 58.879 40.000 31.92 12.92 43.94 1.47
171 172 5.051973 CGCGATGAAGTTCAACGAACATATA 60.052 40.000 31.92 0.00 43.94 0.86
172 173 4.259810 CGCGATGAAGTTCAACGAACATAT 60.260 41.667 31.92 4.73 43.94 1.78
173 174 3.060230 CGCGATGAAGTTCAACGAACATA 59.940 43.478 31.92 0.00 43.94 2.29
174 175 2.159841 CGCGATGAAGTTCAACGAACAT 60.160 45.455 31.92 6.18 43.94 2.71
175 176 1.191425 CGCGATGAAGTTCAACGAACA 59.809 47.619 31.92 0.22 43.94 3.18
176 177 1.454276 TCGCGATGAAGTTCAACGAAC 59.546 47.619 31.92 17.77 43.94 3.95
177 178 1.454276 GTCGCGATGAAGTTCAACGAA 59.546 47.619 31.92 19.18 43.94 3.85
178 179 1.057636 GTCGCGATGAAGTTCAACGA 58.942 50.000 31.92 25.15 43.94 3.85
179 180 0.093026 GGTCGCGATGAAGTTCAACG 59.907 55.000 25.87 25.87 44.02 4.10
180 181 0.093026 CGGTCGCGATGAAGTTCAAC 59.907 55.000 14.06 6.34 0.00 3.18
181 182 0.038983 TCGGTCGCGATGAAGTTCAA 60.039 50.000 14.06 0.00 0.00 2.69
182 183 0.731514 GTCGGTCGCGATGAAGTTCA 60.732 55.000 14.06 8.27 0.00 3.18
183 184 0.731514 TGTCGGTCGCGATGAAGTTC 60.732 55.000 14.06 2.50 0.00 3.01
184 185 1.007336 GTGTCGGTCGCGATGAAGTT 61.007 55.000 14.06 0.00 0.00 2.66
185 186 1.443872 GTGTCGGTCGCGATGAAGT 60.444 57.895 14.06 0.00 0.00 3.01
186 187 3.374330 GTGTCGGTCGCGATGAAG 58.626 61.111 14.06 4.29 0.00 3.02
203 204 3.190337 GCCAGGTATTACGGCTACG 57.810 57.895 5.71 0.00 42.78 3.51
207 208 6.812879 AATAATTAAGCCAGGTATTACGGC 57.187 37.500 4.97 4.97 46.62 5.68
230 231 5.959583 AAAATACACCAACCCCTCAAAAA 57.040 34.783 0.00 0.00 0.00 1.94
231 232 5.189934 ACAAAAATACACCAACCCCTCAAAA 59.810 36.000 0.00 0.00 0.00 2.44
232 233 4.717280 ACAAAAATACACCAACCCCTCAAA 59.283 37.500 0.00 0.00 0.00 2.69
233 234 4.290942 ACAAAAATACACCAACCCCTCAA 58.709 39.130 0.00 0.00 0.00 3.02
234 235 3.917300 ACAAAAATACACCAACCCCTCA 58.083 40.909 0.00 0.00 0.00 3.86
235 236 5.074804 ACTACAAAAATACACCAACCCCTC 58.925 41.667 0.00 0.00 0.00 4.30
236 237 5.069518 ACTACAAAAATACACCAACCCCT 57.930 39.130 0.00 0.00 0.00 4.79
237 238 5.769162 TGTACTACAAAAATACACCAACCCC 59.231 40.000 0.00 0.00 0.00 4.95
238 239 6.880942 TGTACTACAAAAATACACCAACCC 57.119 37.500 0.00 0.00 0.00 4.11
239 240 7.933396 AGTTGTACTACAAAAATACACCAACC 58.067 34.615 10.09 0.00 40.15 3.77
240 241 9.442033 GAAGTTGTACTACAAAAATACACCAAC 57.558 33.333 10.09 0.00 40.15 3.77
241 242 9.175312 TGAAGTTGTACTACAAAAATACACCAA 57.825 29.630 10.09 0.00 40.15 3.67
242 243 8.734218 TGAAGTTGTACTACAAAAATACACCA 57.266 30.769 10.09 0.00 40.15 4.17
260 261 5.692204 AGTTCAGAGACGTACAATGAAGTTG 59.308 40.000 5.50 0.00 43.64 3.16
261 262 5.844004 AGTTCAGAGACGTACAATGAAGTT 58.156 37.500 5.50 0.00 31.21 2.66
262 263 5.455056 AGTTCAGAGACGTACAATGAAGT 57.545 39.130 5.50 6.15 30.99 3.01
263 264 5.119279 CCAAGTTCAGAGACGTACAATGAAG 59.881 44.000 5.50 0.00 30.99 3.02
264 265 4.988540 CCAAGTTCAGAGACGTACAATGAA 59.011 41.667 0.00 0.00 0.00 2.57
265 266 4.038763 ACCAAGTTCAGAGACGTACAATGA 59.961 41.667 0.00 0.00 0.00 2.57
266 267 4.150627 CACCAAGTTCAGAGACGTACAATG 59.849 45.833 0.00 0.00 0.00 2.82
267 268 4.202223 ACACCAAGTTCAGAGACGTACAAT 60.202 41.667 0.00 0.00 0.00 2.71
268 269 3.131577 ACACCAAGTTCAGAGACGTACAA 59.868 43.478 0.00 0.00 0.00 2.41
269 270 2.691526 ACACCAAGTTCAGAGACGTACA 59.308 45.455 0.00 0.00 0.00 2.90
270 271 3.366440 ACACCAAGTTCAGAGACGTAC 57.634 47.619 0.00 0.00 0.00 3.67
271 272 6.093219 GTCTATACACCAAGTTCAGAGACGTA 59.907 42.308 0.00 0.00 0.00 3.57
272 273 5.008331 TCTATACACCAAGTTCAGAGACGT 58.992 41.667 0.00 0.00 0.00 4.34
273 274 5.333513 GTCTATACACCAAGTTCAGAGACG 58.666 45.833 0.00 0.00 0.00 4.18
274 275 5.106237 ACGTCTATACACCAAGTTCAGAGAC 60.106 44.000 0.00 0.00 0.00 3.36
275 276 5.008331 ACGTCTATACACCAAGTTCAGAGA 58.992 41.667 0.00 0.00 0.00 3.10
276 277 5.312120 ACGTCTATACACCAAGTTCAGAG 57.688 43.478 0.00 0.00 0.00 3.35
277 278 5.942236 ACTACGTCTATACACCAAGTTCAGA 59.058 40.000 0.00 0.00 0.00 3.27
278 279 6.192234 ACTACGTCTATACACCAAGTTCAG 57.808 41.667 0.00 0.00 0.00 3.02
279 280 7.105588 TCTACTACGTCTATACACCAAGTTCA 58.894 38.462 0.00 0.00 0.00 3.18
280 281 7.545362 TCTACTACGTCTATACACCAAGTTC 57.455 40.000 0.00 0.00 0.00 3.01
281 282 8.517062 AATCTACTACGTCTATACACCAAGTT 57.483 34.615 0.00 0.00 0.00 2.66
282 283 8.404000 CAAATCTACTACGTCTATACACCAAGT 58.596 37.037 0.00 0.00 0.00 3.16
283 284 7.378995 GCAAATCTACTACGTCTATACACCAAG 59.621 40.741 0.00 0.00 0.00 3.61
284 285 7.148035 TGCAAATCTACTACGTCTATACACCAA 60.148 37.037 0.00 0.00 0.00 3.67
285 286 6.319405 TGCAAATCTACTACGTCTATACACCA 59.681 38.462 0.00 0.00 0.00 4.17
286 287 6.732154 TGCAAATCTACTACGTCTATACACC 58.268 40.000 0.00 0.00 0.00 4.16
287 288 7.914346 AGTTGCAAATCTACTACGTCTATACAC 59.086 37.037 0.00 0.00 0.00 2.90
288 289 7.993101 AGTTGCAAATCTACTACGTCTATACA 58.007 34.615 0.00 0.00 0.00 2.29
343 344 9.284968 GGATAACCACTACAAATTATAGCATGT 57.715 33.333 0.00 0.00 35.97 3.21
578 596 2.897326 TGTGTGTCTGCTACTATGTGGT 59.103 45.455 0.00 0.00 0.00 4.16
649 669 8.677148 ATCACAAGATTATGCCGTAACTATTT 57.323 30.769 0.00 0.00 0.00 1.40
660 680 7.538678 ACGAAGTTCAAAATCACAAGATTATGC 59.461 33.333 3.32 0.00 40.35 3.14
685 705 2.350772 CCGTTCAATGACAGCTTCCAAC 60.351 50.000 0.00 0.00 0.00 3.77
686 706 1.879380 CCGTTCAATGACAGCTTCCAA 59.121 47.619 0.00 0.00 0.00 3.53
694 714 5.305386 AGAGATATCCATCCGTTCAATGACA 59.695 40.000 0.00 0.00 0.00 3.58
722 743 1.627329 GATCCTGATGGCCTCATGCTA 59.373 52.381 3.32 0.00 40.92 3.49
837 866 1.679139 TGTCAAGGTTGAACTGCCTG 58.321 50.000 0.00 0.00 39.21 4.85
839 868 3.518634 TTTTGTCAAGGTTGAACTGCC 57.481 42.857 0.00 0.00 39.21 4.85
900 929 4.018506 CCAACCATATGGCAGGGTATGATA 60.019 45.833 22.18 0.00 41.59 2.15
973 1003 2.781923 TGCTCTGCATGCTTTAGTTGA 58.218 42.857 20.33 4.94 31.71 3.18
978 1008 3.938334 TCGTATTTGCTCTGCATGCTTTA 59.062 39.130 20.33 3.08 38.76 1.85
1034 1064 2.361610 CCATTCTTGTGCCGCCCT 60.362 61.111 0.00 0.00 0.00 5.19
1057 1087 3.981071 TCTGGTACTCTGATGTTTGGG 57.019 47.619 0.00 0.00 0.00 4.12
1095 1125 1.019278 ATAACAAGTGTCGCTGGCGG 61.019 55.000 14.94 0.45 40.25 6.13
1231 1262 0.108424 CTCTGCTTCCTGGAACTCCG 60.108 60.000 4.68 0.00 39.43 4.63
1240 1276 1.729586 TGGGTGTAACTCTGCTTCCT 58.270 50.000 0.00 0.00 38.97 3.36
1243 1322 3.118038 TCAACTTGGGTGTAACTCTGCTT 60.118 43.478 0.00 0.00 38.97 3.91
1306 1385 0.254747 TCCCTTGATGGTTTAGCCGG 59.745 55.000 0.00 0.00 41.21 6.13
1346 1425 0.323542 AGGCTCGGCAGTAGTGTAGT 60.324 55.000 0.00 0.00 0.00 2.73
1381 1465 1.911269 TGTAGCTCTGTTGCCCCGA 60.911 57.895 0.00 0.00 0.00 5.14
1382 1466 1.741770 GTGTAGCTCTGTTGCCCCG 60.742 63.158 0.00 0.00 0.00 5.73
1383 1467 0.391793 GAGTGTAGCTCTGTTGCCCC 60.392 60.000 0.00 0.00 40.98 5.80
1384 1468 3.145228 GAGTGTAGCTCTGTTGCCC 57.855 57.895 0.00 0.00 40.98 5.36
1403 1502 3.826157 CCATTGCCTTGAAGGTTCAACTA 59.174 43.478 13.58 0.00 41.88 2.24
1446 1545 1.687612 CCATGGTCCAGCTGGAGTT 59.312 57.895 35.92 19.87 46.49 3.01
1464 1563 4.453819 CGGCATCATATTTCTTCCTTCTCC 59.546 45.833 0.00 0.00 0.00 3.71
1512 1611 2.159366 CCCTGTAAGCGTCTAGACTGTG 60.159 54.545 20.34 6.60 0.00 3.66
1519 1618 0.815734 GCACTCCCTGTAAGCGTCTA 59.184 55.000 0.00 0.00 0.00 2.59
1526 1625 0.976641 CACCAGAGCACTCCCTGTAA 59.023 55.000 0.00 0.00 0.00 2.41
1527 1626 0.904865 CCACCAGAGCACTCCCTGTA 60.905 60.000 0.00 0.00 0.00 2.74
1552 1651 5.367644 TCTGTGATGACCAATGGATACTGAT 59.632 40.000 6.16 0.00 37.61 2.90
1582 1681 1.930520 GGTAATCCATGCACCCCCT 59.069 57.895 0.00 0.00 0.00 4.79
1662 1776 2.124612 CCCATGCAGCGATGTCCA 60.125 61.111 1.22 0.00 0.00 4.02
1668 1782 1.675310 CCAACTTCCCATGCAGCGA 60.675 57.895 0.00 0.00 0.00 4.93
1675 1789 3.521765 TTGCGGCCCAACTTCCCAT 62.522 57.895 0.00 0.00 0.00 4.00
1815 1970 1.375326 GGAGGAGGCGTTGACCTTT 59.625 57.895 0.00 0.00 41.32 3.11
1853 2008 4.539083 ACCAGCACACGCGTGGAA 62.539 61.111 39.21 0.00 43.81 3.53
1939 2095 4.148825 AGACATCGCCGCACCTCC 62.149 66.667 0.00 0.00 0.00 4.30
1989 2145 2.264794 CCCAACCTCGACCGGAAG 59.735 66.667 9.46 0.39 0.00 3.46
2089 2260 2.721231 CAAACACAGCACCCACCG 59.279 61.111 0.00 0.00 0.00 4.94
2195 2366 2.590291 ATGGACACGTGCGTTGCA 60.590 55.556 17.22 8.51 35.60 4.08
2196 2367 1.911293 ATGATGGACACGTGCGTTGC 61.911 55.000 17.22 1.81 0.00 4.17
2197 2368 0.095245 GATGATGGACACGTGCGTTG 59.905 55.000 17.22 0.00 0.00 4.10
2198 2369 0.320334 TGATGATGGACACGTGCGTT 60.320 50.000 17.22 0.00 0.00 4.84
2199 2370 0.320334 TTGATGATGGACACGTGCGT 60.320 50.000 17.22 0.77 0.00 5.24
2200 2371 0.795698 TTTGATGATGGACACGTGCG 59.204 50.000 17.22 0.00 0.00 5.34
2201 2372 4.818534 ATATTTGATGATGGACACGTGC 57.181 40.909 17.22 8.51 0.00 5.34
2202 2373 8.344831 ACATTTATATTTGATGATGGACACGTG 58.655 33.333 15.48 15.48 0.00 4.49
2203 2374 8.344831 CACATTTATATTTGATGATGGACACGT 58.655 33.333 0.00 0.00 0.00 4.49
2204 2375 8.558700 TCACATTTATATTTGATGATGGACACG 58.441 33.333 0.00 0.00 0.00 4.49
2205 2376 9.888878 CTCACATTTATATTTGATGATGGACAC 57.111 33.333 0.00 0.00 0.00 3.67
2206 2377 9.631257 ACTCACATTTATATTTGATGATGGACA 57.369 29.630 0.00 0.00 0.00 4.02
2229 2400 4.727507 TTCAAGTCCTCTGAGCATACTC 57.272 45.455 0.00 0.00 43.76 2.59
2230 2401 5.690464 ATTTCAAGTCCTCTGAGCATACT 57.310 39.130 0.00 0.00 0.00 2.12
2231 2402 6.749923 AAATTTCAAGTCCTCTGAGCATAC 57.250 37.500 0.00 0.00 0.00 2.39
2233 2404 9.638176 ATTATAAATTTCAAGTCCTCTGAGCAT 57.362 29.630 0.00 0.00 0.00 3.79
2234 2405 9.113838 GATTATAAATTTCAAGTCCTCTGAGCA 57.886 33.333 0.00 0.00 0.00 4.26
2235 2406 8.563732 GGATTATAAATTTCAAGTCCTCTGAGC 58.436 37.037 0.00 0.00 0.00 4.26
2236 2407 9.618890 TGGATTATAAATTTCAAGTCCTCTGAG 57.381 33.333 12.55 0.00 0.00 3.35
2237 2408 9.618890 CTGGATTATAAATTTCAAGTCCTCTGA 57.381 33.333 12.55 0.00 0.00 3.27
2238 2409 9.618890 TCTGGATTATAAATTTCAAGTCCTCTG 57.381 33.333 12.55 6.22 0.00 3.35
2239 2410 9.620259 GTCTGGATTATAAATTTCAAGTCCTCT 57.380 33.333 12.55 0.00 0.00 3.69
2240 2411 8.841300 GGTCTGGATTATAAATTTCAAGTCCTC 58.159 37.037 12.55 6.22 0.00 3.71
2241 2412 7.780271 GGGTCTGGATTATAAATTTCAAGTCCT 59.220 37.037 12.55 0.00 0.00 3.85
2242 2413 7.780271 AGGGTCTGGATTATAAATTTCAAGTCC 59.220 37.037 0.00 0.79 0.00 3.85
2243 2414 8.753497 AGGGTCTGGATTATAAATTTCAAGTC 57.247 34.615 0.00 0.00 0.00 3.01
2244 2415 9.853177 CTAGGGTCTGGATTATAAATTTCAAGT 57.147 33.333 0.00 0.00 0.00 3.16
2245 2416 9.853177 ACTAGGGTCTGGATTATAAATTTCAAG 57.147 33.333 0.00 0.00 0.00 3.02
2306 2477 9.755804 CAGAAAGCTCATTCTAGAATATGTGTA 57.244 33.333 17.53 0.00 37.56 2.90
2307 2478 8.481314 TCAGAAAGCTCATTCTAGAATATGTGT 58.519 33.333 17.53 2.51 37.56 3.72
2308 2479 8.883954 TCAGAAAGCTCATTCTAGAATATGTG 57.116 34.615 17.53 10.11 37.56 3.21
2309 2480 8.922237 TCTCAGAAAGCTCATTCTAGAATATGT 58.078 33.333 17.53 0.20 37.56 2.29
2310 2481 9.932207 ATCTCAGAAAGCTCATTCTAGAATATG 57.068 33.333 17.53 13.54 37.56 1.78
2346 2517 9.396022 AGGAACTTTATGATTCGTATGTTCAAT 57.604 29.630 21.04 13.11 35.61 2.57
2347 2518 8.786826 AGGAACTTTATGATTCGTATGTTCAA 57.213 30.769 21.04 2.67 35.61 2.69
2378 2549 8.567104 GGGTTTGCTGAATGTTTTTATCATTTT 58.433 29.630 0.00 0.00 35.94 1.82
2379 2550 7.174772 GGGGTTTGCTGAATGTTTTTATCATTT 59.825 33.333 0.00 0.00 35.94 2.32
2380 2551 6.654582 GGGGTTTGCTGAATGTTTTTATCATT 59.345 34.615 0.00 0.00 38.08 2.57
2381 2552 6.172630 GGGGTTTGCTGAATGTTTTTATCAT 58.827 36.000 0.00 0.00 0.00 2.45
2382 2553 5.070981 TGGGGTTTGCTGAATGTTTTTATCA 59.929 36.000 0.00 0.00 0.00 2.15
2383 2554 5.546526 TGGGGTTTGCTGAATGTTTTTATC 58.453 37.500 0.00 0.00 0.00 1.75
2384 2555 5.559148 TGGGGTTTGCTGAATGTTTTTAT 57.441 34.783 0.00 0.00 0.00 1.40
2385 2556 5.303971 CATGGGGTTTGCTGAATGTTTTTA 58.696 37.500 0.00 0.00 0.00 1.52
2386 2557 3.922171 TGGGGTTTGCTGAATGTTTTT 57.078 38.095 0.00 0.00 0.00 1.94
2387 2558 3.742385 CATGGGGTTTGCTGAATGTTTT 58.258 40.909 0.00 0.00 0.00 2.43
2388 2559 2.550639 GCATGGGGTTTGCTGAATGTTT 60.551 45.455 0.00 0.00 37.14 2.83
2389 2560 1.002315 GCATGGGGTTTGCTGAATGTT 59.998 47.619 0.00 0.00 37.14 2.71
2390 2561 0.609662 GCATGGGGTTTGCTGAATGT 59.390 50.000 0.00 0.00 37.14 2.71
2391 2562 0.108041 GGCATGGGGTTTGCTGAATG 60.108 55.000 0.00 0.00 40.03 2.67
2392 2563 0.544833 TGGCATGGGGTTTGCTGAAT 60.545 50.000 0.00 0.00 40.03 2.57
2393 2564 1.152376 TGGCATGGGGTTTGCTGAA 60.152 52.632 0.00 0.00 40.03 3.02
2394 2565 1.607178 CTGGCATGGGGTTTGCTGA 60.607 57.895 0.00 0.00 40.03 4.26
2395 2566 2.652095 CCTGGCATGGGGTTTGCTG 61.652 63.158 0.00 0.00 40.03 4.41
2396 2567 2.284112 CCTGGCATGGGGTTTGCT 60.284 61.111 0.00 0.00 40.03 3.91
2397 2568 2.604382 ACCTGGCATGGGGTTTGC 60.604 61.111 7.70 0.00 39.41 3.68
2398 2569 0.251564 TACACCTGGCATGGGGTTTG 60.252 55.000 14.63 3.77 41.77 2.93
2399 2570 0.709992 ATACACCTGGCATGGGGTTT 59.290 50.000 14.63 5.98 41.77 3.27
2400 2571 0.033208 CATACACCTGGCATGGGGTT 60.033 55.000 14.63 2.86 41.77 4.11
2401 2572 1.214305 ACATACACCTGGCATGGGGT 61.214 55.000 14.01 14.01 46.86 4.95
2402 2573 0.466189 GACATACACCTGGCATGGGG 60.466 60.000 4.01 4.01 36.37 4.96
2403 2574 0.255604 TGACATACACCTGGCATGGG 59.744 55.000 7.70 0.00 0.00 4.00
2404 2575 2.019249 CTTGACATACACCTGGCATGG 58.981 52.381 0.00 0.00 33.16 3.66
2405 2576 2.421073 CACTTGACATACACCTGGCATG 59.579 50.000 0.00 0.00 33.16 4.06
2406 2577 2.715046 CACTTGACATACACCTGGCAT 58.285 47.619 0.00 0.00 33.16 4.40
2407 2578 1.881925 GCACTTGACATACACCTGGCA 60.882 52.381 0.00 0.00 30.40 4.92
2408 2579 0.804989 GCACTTGACATACACCTGGC 59.195 55.000 0.00 0.00 0.00 4.85
2409 2580 1.806542 GTGCACTTGACATACACCTGG 59.193 52.381 10.32 0.00 0.00 4.45
2410 2581 1.806542 GGTGCACTTGACATACACCTG 59.193 52.381 17.98 0.00 45.86 4.00
2411 2582 2.185004 GGTGCACTTGACATACACCT 57.815 50.000 17.98 0.00 45.86 4.00
2413 2584 2.480419 GTGAGGTGCACTTGACATACAC 59.520 50.000 17.98 8.56 44.27 2.90
2414 2585 2.549992 GGTGAGGTGCACTTGACATACA 60.550 50.000 19.42 1.39 46.86 2.29
2415 2586 2.076863 GGTGAGGTGCACTTGACATAC 58.923 52.381 19.42 8.23 46.86 2.39
2416 2587 1.977854 AGGTGAGGTGCACTTGACATA 59.022 47.619 19.42 0.00 46.86 2.29
2417 2588 0.767375 AGGTGAGGTGCACTTGACAT 59.233 50.000 19.42 10.43 46.86 3.06
2418 2589 1.344438 CTAGGTGAGGTGCACTTGACA 59.656 52.381 19.42 10.48 46.86 3.58
2419 2590 1.344763 ACTAGGTGAGGTGCACTTGAC 59.655 52.381 17.98 13.87 46.86 3.18
2420 2591 1.717032 ACTAGGTGAGGTGCACTTGA 58.283 50.000 17.98 0.00 46.86 3.02
2421 2592 2.550830 AACTAGGTGAGGTGCACTTG 57.449 50.000 17.98 0.00 46.86 3.16
2422 2593 3.577805 AAAACTAGGTGAGGTGCACTT 57.422 42.857 17.98 9.59 46.86 3.16
2423 2594 4.910458 ATAAAACTAGGTGAGGTGCACT 57.090 40.909 17.98 2.27 46.86 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.