>input_sequence_80071
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---------------------------------------------------------------------ATGCCTATGGT
TCTTCTACGCAAGTTTCATCCCAAGGGCGGCACAAGAATGGTTACTCCCAAACATCAGAGTACCAGATGTCTGAGCGTAA
TGTTCC-GCCAGCGACACTTGTTATCCCCTGAGCCAGGTTCCGCTGGAGTGTACGGTGGCACGCAAGGGTACATTCCGGA
GGCGTCGAAGCTGGTTAATTATGGGCAGCAGAGCTACAATCCTCCCGTGGCATCAAATGACCGGAGTTCC-----A----
---------------------------------------GGAAGCAGAGTTACACCCAAGTTGAACCATCAAGGGACTGG
AGTTCTGGGCAGCAGAGTTACACCCCGGCTAAACCATCAAGGGACTTGAGATCCGGGCAGCAAGACTACACTA-----CT
GCCGAGCCTTCAAGCCAGTGGAGCTCGGGGCA---------------ACAGAGCTACACTCTAGTTGAACCTTCAAGGCA
ATGGAGCTCCGAGCAGCAGGGCTAA-------------------------------------------------------
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>chr5A_1_TraesCS5A01G116000
CAAGCTATTTTTTATTTTTATTTTAAACATTTATCCTCTGAACTTTCCCAACTCTACTTTGTTTTTTTAACTTCTATTTT
TGCTCCGCAGAACTCCTCTAATGACGTTTTTAGCATATAGTTTTAGTTGAAATTGGCATACAGCCATAGTAGAACTTCCC
GGTGGCTGGCGTATATGTTCGTTGAACTTCATCGCGACCGACACGTAGCCGTAATACCTGGCTTAATTATTTTTTGAGGG
GTTGGTGTATTTTTGTAGTACAACTTCATTGTACGTCTCTGAACTTGGTGTATAGACGTAGTAGATTTGCAACTATAATT
TCTCAGACATGCTAAATGGGCCTACATGCTATAATTTGTAGTGGTTATCCAACATTTTTGGTCAACACATCAGGGGGGTG
CGCTATGTGCAAATGTCTAAAAAAAA-TTTGACATAATAAAATAACACATTTGTGAACATATCTTATTTTCTAGCACTC-
TTTCTATTGTCGTAGCATCAAAATATTTTCATAAATGCACCCCACACAAATGGGAGTACACACCAGAGC-----------
----GCGCAGCCTCAGACACACGAACACACAAGCAACCACATAGT-AGCAGACACACACGAGTCATCACACCCAGCACGC
ACGCATGCACCAATATACTAATA-TTTTAAATAGTTACGGCATAATCTTGTGATTTTGAACTTCGTTGGAAGCTGTCATT
GAACGGATGGATAT-CTCTTTATAGCAT-GAGGCCATCAGGATCAGTTATCTGAACATAACGGCCGAACATTCGGCTTTC
TGAACTCTGAAATACTACTTTAGTTATAGAGCAACTTCTCTCATTCAGTTATCT-------GGCCCAGGCAGTTCAACCT
TGACAAAAATTGCAGAATTGCTACCTGTTGAGCAGAACTTTGGTACACTATCATACCCTGCCATATGG-TTGGCGTCTGA
TCCTGCTGCAGTGGCCATCCATCAGCAGCTAGAGTGCTTACATCAACTAAAGCATGCAGAGCAAATACGATGCCTATGGT
TCTTCTACGCAAGTTTCATCCCAAGGGCGGCACAAGAATGGTTACTCCCAAACATCAGAGTACCAGATGTCTGAGCGTAA
TGTTCC-GCCAGCGACACTTGTTATCCCCTGAGCCAGGTTCCGCTGGAGTGTACGGTGGCACGCAAGGGTACATTCCGGA
GGCGTCGAAGCTGGTTAATTATGGGCAGCAGAGCTACAATCCTCCCGTGGCATCAAATGACCGGAGTTCC-----A----
---------------------------------------GGAAGCAGAGTTACACCCAAGTTGAACCATCAAGGGACTGG
AGTTCTGGGCAGCAGAGTTACACCCCGGCTAAACCATCAAGGGACTTGAGATCCGGGCAGCAAGACTACACTA-----CT
GCCGAGCCTTCAAGCCAGTGGAGCTCGGGGCA---------------ACAGAGCTACACTCTAGTTGAACCTTCAAGGCA
ATGGAGCTCCGAGCAGCAGGGCTAAACTCCAGCTGGACCATGGGAGAAGGAAGAAATATGATGCCGGGGAAGGTCGAATC
TAGCCATCGCCACAGTCTAGACGCTTACAGGGAGTGCTCTGGTGGTCGCCATCAGTATCCATTGGTCATCACAGACCCAC
AGGGGGTGCATGGATTACCGAATCCGCTGGCCAAAATCTCGACAGAACCCATCCGGCGGGTGA---------------GG
AATGAAGAAGGAAGATGGACATCGCTGCATGGGAAGTTGGG---------------------------------------
-CCGCAACGCGCGGGATGCAGAGCTCAGAGAGGTAGCAGGGCAGAGGCGACGGCGCTGGAGGTATCAGCGGCGGGGTGTG
GGAGAGGTCTTCCGCGGCGGCCAGTGCAGGC-CGTTGCCTCCTCCAGCTAAAGGTCAACGCCTCCTCCAGCTGCAGGATA
ACGTCCATTCCACGCGTGTGCTGGTGGTCGTCGGCGAGTGAAGGGCGGTGAAGGATCCTCGCCGGATCCGGCGA-CCCCC
GAGGTGCTCCGGGAGGAGGTGCGGCGATGTCTCCTCCGGATCCGTTGGGACGGGGGGTGGCGCGCTTCCGGTCGAGGTTG
GGGCTGCGGCACGTCGACGCCTGGGGGCGGGGCGGCTG---------------CGGAGGCGCCGGTCGGGGGTGCGGCGC
CTGCGGTGTCGCCGGTTGGCGGTGGGTGCTGTGTTTGGATCGGGGAGGTGGGTGGTGTCGGGTGCGGGAGTGGAGCTATG
TTTTTTCTTTATTATCTGGATTCTGAAGTTCGGAAACATCGCACGTGCAACGCACGTGTCCATCATCAAATATAAATGTG
AGTATGCTCAGAGGACTTGAAATTTATAATCCAGACCCTAGTATAATTTATAAAAAAGGTCATAAATATGAGTCTATACA
CATATTCTAGAATGAGCTTTCTGAGATAAAATTACAATTGAACATACGAATCATAAAGTTCCTTTCATAAAATGATAAAA
ACATTCAGCAAACCCCATGCCAGGTGTATGTCAAGTGCACCTCACCTAGTTTTATAC
>chr2A_291
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--------------------------------------------------TATAGACGTAATAGATTTGCAACTATAATT
TCTCAGACATGCTAAATGGGCCTGCATGCTATAATTTGTAGTGGTTATCCAACATTTTTGGTCAACGCATCAAGGGGATG
CGCTACGTGCAAATGTCTAAAAAGTTTTTTGACATAATAAAAGAACACATTTGTGAACATATCTTATTTTCTAGCACTC-
TA--TATTTCCGTAGCATCAAAATATTTTCATAAATGCACCCCACACAAATGGGAGTACACAGCAGAGCAG---------
------GCAGCCTCGGACACACGAACACACAAGCACCCACATAGT-AGCAGACACACACGAGTCATCACACCCAGCACGC
ACGCATGCACCAATATACTAATA-TTTTCAATATTTACGTCATAATCTCGTGATTTTGAACTTCTGCGGAAGCCGTCACT
GAACGGATGGATAT-CTCTTTACAGCATCGAGGCCATCAGGATCAGTTATCTGAACATAACGGCCGAACATTCGGCTTTC
TGAACTCTGAAATACTACTTTAGTTATAGAGCAACTTCTCTCATTCAGTTATCT-------GGCCAACGCAGTTCAACCT
TGACAAAAATTACAGAATAGCTACTTGTTGAGCAGAACTTTGGTACACCATCATACCCATCCATATGGCTTGGTGTCTGA
TCCTGCTGCAGTGGCCATCCATCAGCAGCTAGAGTGCTTACAGCAACCAAAGCATGCAGAGCAAATACGATGCATATGGT
TCTTCTACGCAAGTTTCATCCCAGGGGCGGCACAAGAATGGTTACTACCAAACATCAGAGTACCAGATGTCCGGGCGTAA
TGTT-CCGCCAACAACACTCGTTAT-CCTTGAGCCAGGTTCCGCTGGAATGTACAGTGGCACGCAAGGGTACATTCCGGA
GGCGTCGAAGCTGGTTAATTATGGCAAGCAGAGCTACAATCCTCCCGTGGCATCAAATGACTGGAGTTCC-----G----
---------------------------------------GGCAGCAGAGTTACACCCAACCTAAACCATCAAGGGGCTGG
AGTTCTGGGTGGCAGAGTTACACCTCGGCTAAACCATCAAGGGACTTGAGATCCGGGCAGAAAGGCTACACTA-----AT
GCCGAGCCTTCAAGGCAGTGGAACCATCA---------------------------------------------AAGGCA
ATGGAGCTCCGAGCAGCAGGGCTACACTCCAGTTGGACCATGAGAGAAGGAAGAAATATGATGCCGGGGAAGGTCGAATC
TAGCCATCGCTACAGTCCAGACGCAGACAGGGAGTGCTCTGGTGGTCGCCGTCAGTATCCATTGGTCATCAGAGACCCAC
GGGGGGTGTAGGGATTACCGAATCCGCTGGCCAAAATCTCGACAAAACCCATCCGGCGGGCGA---------------GG
AATGAAGAAGGAAGAAGGACAGCGCTGCGTGGGAAGTTGGC---------------------------------------
-CGGCGGCGCGCGGGATGCATATCTCGGAGAGGTGGCAGGGCAGAGGCGACGGCGCTGGAGGTATCAACGGCGGGGTGTG
AGAGAGGTCTTCCACGGCGGCCAGTGCAGGC-TGCTGCCTCCTCGAGCTGAAGGTCAACGCCTCCTCCAGCTGCAGGATA
ACGTCCAATCCACGCATGTGCTGGTGGTCATTTGCGAGTGAAGGGCGGTGAAGGATCCTCGCCGGATTCGGCGACCCCC-
GAGGTGCTCC-GGAAGAGGTGCGGCGGCGTCTCCTCCGGATTTGTTGGGTCGGGGTGCGGCGCGTTGCCGGTTAGGGTTG
GTGCTGCGGTGCATCGACGCCTAGGGGCGGGGCGGCCG---------------CGGAGACGCCGGCCGGGGGCGGGGCGG
CTGCGGTGTCGCCAGTTGGTGGTGGGTGCTGCATTTGGATCGGGGAGGTGGGTGGTCCCGGGTGCGAGAG-----CTATG
TTTTTTCTTTATTATCTGGATTCTGAAGTTCGGAAACATCGC--------------------------------------
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>chr7A_408
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-------TGTAAATGTCTAAAATGTTTTTTGACATAAGCAAACAACACATTTGTGAACATAAGTTATTTTCTAGTAATCT
TTTCTATTGCCCTAGCATCAAAATGTTTTCATAAATGCACCC-ACACAAACGGGAGTACACACTAGAGCACGCACACACA
GAGCGCGCAGCCGCATACACACCAACACAAAAGCACCCACATAGTGAGCGGACACACACGAGTCATCACACTCAGCACAC
ACGCATGCACCAATATAGTAATCTTTTTCAATAGTTACTTCATAACCTCTTGATTTTGAATCCCCGTGGAAGCCGTCATT
GAACAGTTGAATAT-CTTTTTACAACATCAAGGCCATCATGATTAGTTATCTGAACATAATGGCCGAACATCTGTCTTTC
TGAACTCTAAAATACTACTTCAGTCATAGAGCAACTTCTCTCATTCAGTTATCTAAACAGTGGCCAACACAGTTCAACCT
TGATCAAAATTGCAGACCTGCAACCTGTTTAATAGAACTTCGGTAGACCAGCATACCCAGCCATATGGCTTGGCGTATGA
TCCTGCTGTAGTGGCCATCCATCAGCAGCCAGAGTGCTGACA--------------------------------------
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--------------------------------------------------------------GGAGTTCTGGGTAG----
---------------------------------------GGTAGTAGCGTTACACCCCGGTTGAACCATCAAGGGACTGA
AATTCCATGCAGCAAAGGTACACTTCAGCTTAACCATCAAGGGACTTGAGATCCGGGCAGCAGGGCTACACAACACCCCT
GCCGAGCCTTCAA---------------GGCA---------------ACAGAGCTACACTCCAATTCAACTTTCAAGGCA
ATGGAGCTCCGGGCAGCAGGGCTACACTACAGCTGAACCATGAGAGAAGGAAGAAATACAATGCCGGGGAAGGTCGAATC
TAGCCATCGCTACAGTCCACGTGTAGACAGTGAGTGCTCTGGTGGTC------AGCATCCATCGGTCATCAGAGACCCAC
GGGG--TGCAGGGATGACCAGATCCGCCGGACAAAATCCCGGGAGAGCCCATCCGACGGGTGGGGGTGGGGAATGAAGGG
AAGAAGGGAGGAAGCAGGACAACGCTATGTGGGAAGTTCAGCGGCGGCAAGCTAGTTGCGCAGCGGAGGGAGGAAGCAGA
GCGGCGGCGCGTGGGATGCAGAGCTCAGAGAGGTAGCAGGGCAGAGGTGACGGCGCTAGAGGGATCAGCGGCGGGGTGTG
GGAGAGGTCTTTCATGGCGGCCAGCTGCAAGTCGTTGCCTCCTCCGGCTGAAGGTCAATGCCTCCTCCGGGTGAAGGTCG
GA--CCAATCCGCGCGTGTTCTCGTGGTCTCCGGCGAGTGAAGGGCGGCGAAGGATACTCGCCAGATCCGGCGA-CCCC-
GAGGTGGTCCGGGAAGTGGTGCGACGGCGTCTCCTCCGGATCCGTTGGG---------------------------GTCG
GGGCTACGCCGCGTCGGCGGCTGGGGGCAGGGCGGCCGTGGTGGTGCCGGCCACGGAGACGCCGGGCGGGGGCGGGGCGG
CTGTTGTGTCGCTAGTTGGTGGTGGGTGAGGTGGGTGGTGC-GGGAGGTGGGTGG-------------------------
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>chr1B_408
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-------TGCAAATGTCTAAAAGGTTTTTTGACATAAGCAAACAACACATTTGTGAACATAAGTTATTTTATAGTACTCT
T-TCTATTTCCCTAGCATCAAAATGCTTTCATAAATGCACCC-ACACAAACGGGAGTACACAGTAGAGCACGCACACACA
GAGTGCGCAGCCGCGTACACACCAACACACAAGCACCCACATAGTGAGCGAACACACACGAGTCATCACATCCAACACAC
ACGCATGCACCAATATACTAATCTTTTTTAATAGTTACTTCATAACCTCTTGATTTTGAACTCCCGTGGAAGCCGTCATT
GAACGGCTGAATAT-TTTT-TACAACATCGAGGCCATCATGATTAGTTATCTTAACATAACAGCCGAACATCCGTCTTTC
TGAACTCTGAAATAATACTTCAGTTATAGAGCAACTTCTCTCATTCAGTTATATGAACAG-GGCCAACGCAATTCAACCT
TGATTAAAATTGCAGAATTGCAACCTATTTAATAGAACTTCGGTAGACCAGCGTACCCAGCCATGTGGATTGGCGTATGA
TCCTACTACAGTGGCCATCCATCAGCAGCCAGAGTGCTAAAC--------------------------------------
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--------------------------------------------------CATCAACGGACTGGAGTTCTGGGTAG----
---------------------------------------GGTAGCAGAGTTACACCTCGGTTGAATCATCAAGGGACTAG
AGTTCCGTGCAGCAGAGGTACACTTCGACTGAACCATCAAGGGACTTGAGATCTGGGCAGCAGGGCTACACAACACCTCT
GCCAAGTCTTCAA---------------GGCA---------------ACAGAGCTACACTCAAGTTGAACCTTCAAGGCA
ATGGAGCTCCGGGCAGCAGGGCTACACTACAGCTGAACCATGAGAGAAGGAAGAAAGACAATGTCGGGGAAGGTAGAA--
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>chr6B_411
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----------AAATGTCTAAAAGGTTTTTTGACATAAGCAAACAACACATTTGTGAACATAAGTTATTTTTTAGTACTCT
T-TCTATTGCCCTAGCATCAACATGTTTTCATAAATGCACCC-ACACAAACGGGAGTACACACTAGAGCACGCACACACA
GAGCACGCAACCGCGTACACACCAACACACAAGCACCCACATAGTGAGCGG-CACACACGAGTCATCACACCCAACACAC
ACGCATGCACCGATATACTAATCTTTTTCAATAGTTACTTCATAACCCCTTGATTTTGAACTCCCGTGGAAGCCGTCATT
GAATGGTTGAATATCTTTT-TACAACATCAAGGCCATCAAGATTAGTTATCTGAACATAACGGCCGTCCATCCGTCTTTC
TGAACTCTAAAAT-ATACTTCAATTATAGAGCAACTTCTCTCATTCAGCTATCTGAACAG-GGCCAACGCAGTTCAACCT
TGAACAAAATTGCAGAATTGCAACCTGTTTAATAGAACTTCGGTAAACCAGCATACCCA------TGGCTTGGCGTCTGA
TCCTGCTGCAGTGGCCATCCATCAGAAGCCAGAGTGCTGAAC--------------------------------------
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--------------------------------------------------CATCAAAGGACTAGAGTTCTGGGTAG----
---------------------------------------GGTAGCAGAGTTACACCCCGGTTGAATCATCAAGGGACTGG
AGTTCCGTGCAGCAGAGGTATACTTCGACTGAACCATCAAGGGACTTGAGATCTGGGCAGCAGGGCTACGCAACACCCCT
GCCGAGCCTTCAA---------------GGCA---------------ACAGAGCTACACTCCAGTTGAACCTTCAAGGCA
ATGGAGCTCCGGGCAGTAGGGCTACACTACAGCTGAACCATGAGAGAAGCAAGAAAGACGATGCCGGGGAAGGTCGAACC
TAGCCATCGTTGCAGTCCACGCATAGACAGTGAGTGCTTTGGTGGTT------AGCATCAATCGGTCATCAGAGACCCAC
GGGC--TGCAGGGATGACCGGATCCGCCAGCGAAAATCTCGGCAGAGCTCATCCGGCGGGAGGGGGTGGAGAATGAAGAA
GGA-----------------------------------------------------------------------------
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>chr6D_411
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----------AAATGTCTAAAAAGTTTTTTGACATAAGCAAACAACACATTTGTGAACATAAGTTATTTTCTAGCACTCT
T-TCTATTGCCCTAGCATCAAAATGTTTTCAAAAATGCACCC-ACACAAACGGGAGTACACATCAGGGCACGCACACACA
GAGTGCACAGCCGGATACACACCAACACACAAGCACCCACATAATGAGCGG-----------------------ACACAC
ACGCATGCACCAATATACTAATCTTTTTCAATAGTTACTTCATAACCTCTTGATTTCGTACTTCCATGGAAGCCGTCATT
GAATGACTGAATATCTTCT-TACAACATTGAGGCCATCAGGATTAGTTATCTGGACATAACGGTCGAACATTCGTCTTTC
TGAACTCTAAAATATTACTTCAGTTATAGAGCAACCTCTGTCATTCAGTTACCTGAACAGTGGCCA--------CAACCT
TGATCAAAATTGCAGAATTGCAACCTCTTTAATAGAACTTCCGTAGACCAGCATACCCAGCCATATGGCTTGGCGTCTGA
TCCTGCTGCAGTGGCCATCCATCAGCAGCCAGAGTGCTGAAC--------------------------------------
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--------------------------------------------------CATCAA------------------------
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>chr3D_962
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------------------------------AGAGTGCTTACAGCAACCAAGGCTTGCAGAGCACATACGATGCCTATGGT
TCTTCTACGTCAGCCTCATCCCAGGGACTGAACAGAAATGGTTACATCCAAACGTCAGAGTACCAGATGTCGGGGCGTAA
TGTT-C-GCCAGCGACACTCGCTATCCCCTGAGCCAGGTTCCGCTAGAGTGTATGGCGGCACGCAAGGGTACATTCCGGA
GTCGTCGAAGCTGGGGAATTATGGGCAGCAGAGCTACAATCCTCCTGTGGCATCAAGGGACTGGAGTTCTGGGCAGCAGA
GTTACACCCCGGCTGAACCATCAAGGGACTGGAGTTCTGGGCAGCAGAGCTACACCCCGGCTGAACCATCAAGGGACTGG
AGTTCCTTGCAGCAGAGCTACACGTCGGCTGAACCATCAAGGGACCGGAGCTCCGGGCAGCAGGGCT-----ACACCCCA
GCCGAGCCTTCAA---------------GGCAGTGGAGCTCGGGGCAACAGAGCTACACTCCAGCTGAACCTTCAAGGCA
ATGGAGCACCGGACAGCAGGGCTACACTCCAGC-----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-------------------
-----------------------S------------------------------------------S-----S----S--
-----S-----------------SSS----------------S-------------------------------------
---------S----------------------------------------------------------------------
-----------------------------------S--------------------------------------------
----------------------------S----------S--------S---------------SS-------S------
----------------------S---------------------------------------------------------
-----------------------------------------------------------------S-S------------
------------------------------------------------S---------S---------------------
------------------------------------------S----S--------------------------------
-----------------------S----------------------S------------------------S-S------
----S--------------S------------------------------------------------------------
-------------------------------------------------------------S-------------S----
-----------------------------------------S--------------------------------------
------------------------S---------------------------------------S---------------
--------------S-------S-SSSS---------------------------------S------------------
------------------------S-----------------S-------------------------------------
----------S------S------SS------------------------S--------------------S--------
S---------S---------------------------------------------------------------------
---------------S-----S------S---------------------------------------------------
--S--SS-------------------------------------------------------------------------
-------------S-----------------------------------S------------------------------
-------S---------------------S-------------------------------------------------S
--------------S-----------SS---------------------S-----S-S------S-S-----SSS-----
----------S-------------------------S---------------------S------S------S-S----S
-------------S-----S------------------------------------SS--------S---SSSSS-----
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_199
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-------------------CGTTGAACTTCATCGCGACC-----------------------------------------
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>reverse_2368
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-----------------------------------------------CAACGCACGTGTCCATCATC-------------
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