AutoCloner

Multiple sequence alignment - TraesCS5A01G111600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G111600	chr5A	100.000	2192	0	0	1	2192	214956624	214954433	0.000000e+00	4048.0
1	TraesCS5A01G111600	chr5A	80.144	277	43	9	405	676	598890845	598891114	1.720000e-46	196.0
2	TraesCS5A01G111600	chr5A	100.000	47	0	0	1	47	214964310	214964264	1.080000e-13	87.9
3	TraesCS5A01G111600	chr5A	92.683	41	1	2	2152	2190	458199141	458199181	8.450000e-05	58.4
4	TraesCS5A01G111600	chr5B	93.988	1497	43	17	672	2166	211739596	211738145	0.000000e+00	2222.0
5	TraesCS5A01G111600	chr5D	96.059	888	20	9	672	1557	200788051	200787177	0.000000e+00	1432.0
6	TraesCS5A01G111600	chr5D	96.510	573	20	0	1594	2166	200787178	200786606	0.000000e+00	948.0
7	TraesCS5A01G111600	chr5D	91.111	45	1	3	2150	2192	275149078	275149035	8.450000e-05	58.4
8	TraesCS5A01G111600	chr7A	97.418	581	15	0	1	581	55336406	55335826	0.000000e+00	990.0
9	TraesCS5A01G111600	chr6D	85.862	580	78	3	3	581	239053026	239053602	4.000000e-172	614.0
10	TraesCS5A01G111600	chr4D	83.591	518	84	1	65	581	425221672	425222189	3.270000e-133	484.0
11	TraesCS5A01G111600	chr4D	97.143	35	1	0	2158	2192	252227699	252227665	2.350000e-05	60.2
12	TraesCS5A01G111600	chr4D	92.308	39	3	0	2154	2192	67234496	67234534	3.040000e-04	56.5
13	TraesCS5A01G111600	chr7D	82.692	520	88	2	65	583	568247060	568247578	5.510000e-126	460.0
14	TraesCS5A01G111600	chr7D	94.845	97	4	1	580	676	481573845	481573750	1.360000e-32	150.0
15	TraesCS5A01G111600	chr7D	93.056	72	4	1	757	828	377604651	377604581	1.070000e-18	104.0
16	TraesCS5A01G111600	chr6B	83.607	488	79	1	96	582	51384067	51384554	7.130000e-125	457.0
17	TraesCS5A01G111600	chr6B	86.792	53	3	3	2141	2192	713878218	713878267	3.040000e-04	56.5
18	TraesCS5A01G111600	chrUn	100.000	242	0	0	1359	1600	471412444	471412685	4.290000e-122	448.0
19	TraesCS5A01G111600	chrUn	96.774	93	2	1	581	673	27476045	27475954	1.050000e-33	154.0
20	TraesCS5A01G111600	chrUn	100.000	47	0	0	1	47	312451884	312451930	1.080000e-13	87.9
21	TraesCS5A01G111600	chr1D	82.218	523	88	2	65	583	57127417	57126896	1.540000e-121	446.0
22	TraesCS5A01G111600	chr1A	80.909	440	82	2	72	510	549411925	549411487	1.610000e-91	346.0
23	TraesCS5A01G111600	chr1A	86.897	145	17	2	441	583	58839197	58839053	6.260000e-36	161.0
24	TraesCS5A01G111600	chr6A	94.512	164	9	0	297	460	466853109	466853272	1.000000e-63	254.0
25	TraesCS5A01G111600	chr2D	73.400	500	119	12	98	589	516703305	516703798	8.040000e-40	174.0
26	TraesCS5A01G111600	chr2D	94.737	38	2	0	2155	2192	1623009	1623046	2.350000e-05	60.2
27	TraesCS5A01G111600	chr2D	97.143	35	1	0	2158	2192	635818440	635818406	2.350000e-05	60.2
28	TraesCS5A01G111600	chr3B	95.876	97	2	2	579	675	54326013	54325919	2.910000e-34	156.0
29	TraesCS5A01G111600	chr3B	95.789	95	3	1	581	675	777762474	777762567	3.770000e-33	152.0
30	TraesCS5A01G111600	chr3B	93.671	79	3	2	747	825	798525845	798525921	1.370000e-22	117.0
31	TraesCS5A01G111600	chr4A	95.833	96	3	1	577	672	603501360	603501454	1.050000e-33	154.0
32	TraesCS5A01G111600	chr3A	93.137	102	6	1	584	684	24718837	24718938	4.880000e-32	148.0
33	TraesCS5A01G111600	chr3A	89.381	113	8	3	560	672	197111112	197111220	2.930000e-29	139.0
34	TraesCS5A01G111600	chr3A	92.405	79	4	2	747	825	726123445	726123521	6.400000e-21	111.0
35	TraesCS5A01G111600	chr3A	90.588	85	5	2	744	828	659020115	659020196	2.300000e-20	110.0
36	TraesCS5A01G111600	chr4B	90.826	109	7	3	567	674	147077020	147076914	2.270000e-30	143.0
37	TraesCS5A01G111600	chr3D	97.015	67	2	0	759	825	595076882	595076948	1.780000e-21	113.0
38	TraesCS5A01G111600	chr3D	93.056	72	4	1	757	828	524718056	524718126	1.070000e-18	104.0
39	TraesCS5A01G111600	chr7B	93.056	72	4	1	757	828	372325634	372325564	1.070000e-18	104.0
40	TraesCS5A01G111600	chr2A	94.737	38	0	2	2155	2192	107387275	107387240	8.450000e-05	58.4
41	TraesCS5A01G111600	chr2A	94.737	38	1	1	2155	2192	458655346	458655382	8.450000e-05	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G111600	chr5A	214954433	214956624	2191	True	4048	4048	100.0000	1	2192	1	chr5A.!!$R1	2191
1	TraesCS5A01G111600	chr5B	211738145	211739596	1451	True	2222	2222	93.9880	672	2166	1	chr5B.!!$R1	1494
2	TraesCS5A01G111600	chr5D	200786606	200788051	1445	True	1190	1432	96.2845	672	2166	2	chr5D.!!$R2	1494
3	TraesCS5A01G111600	chr7A	55335826	55336406	580	True	990	990	97.4180	1	581	1	chr7A.!!$R1	580
4	TraesCS5A01G111600	chr6D	239053026	239053602	576	False	614	614	85.8620	3	581	1	chr6D.!!$F1	578
5	TraesCS5A01G111600	chr4D	425221672	425222189	517	False	484	484	83.5910	65	581	1	chr4D.!!$F2	516
6	TraesCS5A01G111600	chr7D	568247060	568247578	518	False	460	460	82.6920	65	583	1	chr7D.!!$F1	518
7	TraesCS5A01G111600	chr1D	57126896	57127417	521	True	446	446	82.2180	65	583	1	chr1D.!!$R1	518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
365	366	1.067516	GCATTGGTGGGATGTATGCAC	59.932	52.381	0.0	0.0	40.86	4.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1350	1357	1.650153	CGTCATGCAAAATCGCAAAGG	59.35	47.619	0.0	0.0	46.87	3.11	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
123	124	1.196104	AAAATCAGGGTCGACGGGGA	61.196	55.000	9.92	6.80	0.00	4.81
310	311	4.572985	ATCCCATGTTATTGTTGCATCG	57.427	40.909	0.00	0.00	0.00	3.84
365	366	1.067516	GCATTGGTGGGATGTATGCAC	59.932	52.381	0.00	0.00	40.86	4.57
558	564	7.436118	CCCATGAACATTATCCAATAAAGTGG	58.564	38.462	0.00	0.00	40.33	4.00
600	606	6.670695	AAAAACTAGTTACTCCCTCCGTAA	57.329	37.500	8.92	0.00	0.00	3.18
601	607	6.670695	AAAACTAGTTACTCCCTCCGTAAA	57.329	37.500	8.92	0.00	0.00	2.01
602	608	5.651387	AACTAGTTACTCCCTCCGTAAAC	57.349	43.478	6.26	0.00	0.00	2.01
603	609	4.928263	ACTAGTTACTCCCTCCGTAAACT	58.072	43.478	0.00	0.00	0.00	2.66
604	610	6.067217	ACTAGTTACTCCCTCCGTAAACTA	57.933	41.667	0.00	0.00	0.00	2.24
605	611	6.485171	ACTAGTTACTCCCTCCGTAAACTAA	58.515	40.000	0.00	0.00	0.00	2.24
606	612	7.122048	ACTAGTTACTCCCTCCGTAAACTAAT	58.878	38.462	0.00	0.00	0.00	1.73
607	613	8.275040	ACTAGTTACTCCCTCCGTAAACTAATA	58.725	37.037	0.00	0.00	0.00	0.98
608	614	9.294614	CTAGTTACTCCCTCCGTAAACTAATAT	57.705	37.037	0.00	0.00	0.00	1.28
610	616	9.646522	AGTTACTCCCTCCGTAAACTAATATAA	57.353	33.333	0.00	0.00	0.00	0.98
611	617	9.905171	GTTACTCCCTCCGTAAACTAATATAAG	57.095	37.037	0.00	0.00	0.00	1.73
612	618	9.866655	TTACTCCCTCCGTAAACTAATATAAGA	57.133	33.333	0.00	0.00	0.00	2.10
613	619	8.406730	ACTCCCTCCGTAAACTAATATAAGAG	57.593	38.462	0.00	0.00	0.00	2.85
614	620	7.039853	ACTCCCTCCGTAAACTAATATAAGAGC	60.040	40.741	0.00	0.00	0.00	4.09
615	621	6.072286	TCCCTCCGTAAACTAATATAAGAGCG	60.072	42.308	0.00	0.00	0.00	5.03
616	622	6.294397	CCCTCCGTAAACTAATATAAGAGCGT	60.294	42.308	0.00	0.00	0.00	5.07
617	623	7.144000	CCTCCGTAAACTAATATAAGAGCGTT	58.856	38.462	0.00	0.00	0.00	4.84
618	624	7.650903	CCTCCGTAAACTAATATAAGAGCGTTT	59.349	37.037	0.00	0.00	0.00	3.60
619	625	9.669353	CTCCGTAAACTAATATAAGAGCGTTTA	57.331	33.333	0.00	0.00	0.00	2.01
620	626	9.669353	TCCGTAAACTAATATAAGAGCGTTTAG	57.331	33.333	0.00	0.00	30.36	1.85
621	627	8.909671	CCGTAAACTAATATAAGAGCGTTTAGG	58.090	37.037	0.00	0.00	34.83	2.69
622	628	9.669353	CGTAAACTAATATAAGAGCGTTTAGGA	57.331	33.333	0.00	0.00	36.01	2.94
669	675	9.832445	TGCTCTTATATTAGTTTACAAAGGGAG	57.168	33.333	0.00	0.00	0.00	4.30
670	676	9.833917	GCTCTTATATTAGTTTACAAAGGGAGT	57.166	33.333	0.00	0.00	0.00	3.85
836	843	2.721231	GCTGTTTTGTCTGCGCCA	59.279	55.556	4.18	0.00	0.00	5.69
882	889	1.205064	CTGCGTTGCGTCTTCTTGG	59.795	57.895	0.00	0.00	0.00	3.61
903	910	3.479269	CCGCCGTTCTCTTGTCGC	61.479	66.667	0.00	0.00	0.00	5.19
910	917	3.304794	GCCGTTCTCTTGTCGCTATATCT	60.305	47.826	0.00	0.00	0.00	1.98
911	918	4.083431	GCCGTTCTCTTGTCGCTATATCTA	60.083	45.833	0.00	0.00	0.00	1.98
912	919	5.562307	GCCGTTCTCTTGTCGCTATATCTAA	60.562	44.000	0.00	0.00	0.00	2.10
913	920	6.081049	CCGTTCTCTTGTCGCTATATCTAAG	58.919	44.000	0.00	0.00	0.00	2.18
914	921	6.073167	CCGTTCTCTTGTCGCTATATCTAAGA	60.073	42.308	0.00	0.00	0.00	2.10
922	929	7.511959	TGTCGCTATATCTAAGACAAGACAT	57.488	36.000	0.00	0.00	38.66	3.06
1150	1157	4.814294	CCTTCGCCGGGTTCCTCG	62.814	72.222	2.18	0.00	0.00	4.63
1262	1269	2.526432	GAGATCTTGGCTCGGGGTATA	58.474	52.381	0.00	0.00	0.00	1.47
1350	1357	1.929836	CAAGTAGCTCGGATGCTGTTC	59.070	52.381	10.81	3.94	43.87	3.18
1592	1599	1.980765	AGATGAGACCACAAGGCTTCA	59.019	47.619	0.00	0.00	39.06	3.02
1622	1629	3.387374	TGCCTTGGCTTCTTTCAAAATCA	59.613	39.130	13.18	0.00	0.00	2.57
1817	1825	3.119291	GTGGTGATCTGATCAGTTAGCG	58.881	50.000	21.92	0.00	40.53	4.26
1831	1839	4.212004	TCAGTTAGCGCATTCATAGCATTC	59.788	41.667	11.47	0.00	0.00	2.67
1884	1892	1.601903	TGCAGTTGAAGTTTACGGCAG	59.398	47.619	11.03	0.00	39.83	4.85
1919	1927	2.038295	GCGATGGATGGGATCTTCTCTT	59.962	50.000	0.00	0.00	0.00	2.85
1935	1943	4.815533	TCTCTTTGAGCTTCTGTGCTAT	57.184	40.909	0.00	0.00	44.17	2.97
2035	2043	0.975556	TGAGATTACCGCCTCCTGCA	60.976	55.000	0.00	0.00	41.33	4.41
2100	2108	5.991606	GGGTGAAAGGAAGGAATTTTCAAAG	59.008	40.000	0.97	0.00	34.02	2.77
2166	2174	5.731957	TGGAAAGGGCCAATAAAAGTTAC	57.268	39.130	6.18	0.00	34.31	2.50
2167	2175	5.399113	TGGAAAGGGCCAATAAAAGTTACT	58.601	37.500	6.18	0.00	34.31	2.24
2168	2176	5.479027	TGGAAAGGGCCAATAAAAGTTACTC	59.521	40.000	6.18	0.00	34.31	2.59
2169	2177	5.105473	GGAAAGGGCCAATAAAAGTTACTCC	60.105	44.000	6.18	0.00	0.00	3.85
2170	2178	3.977312	AGGGCCAATAAAAGTTACTCCC	58.023	45.455	6.18	0.00	0.00	4.30
2171	2179	3.596500	AGGGCCAATAAAAGTTACTCCCT	59.403	43.478	6.18	0.00	36.79	4.20
2172	2180	3.952323	GGGCCAATAAAAGTTACTCCCTC	59.048	47.826	4.39	0.00	0.00	4.30
2173	2181	4.325109	GGGCCAATAAAAGTTACTCCCTCT	60.325	45.833	4.39	0.00	0.00	3.69
2174	2182	4.640647	GGCCAATAAAAGTTACTCCCTCTG	59.359	45.833	0.00	0.00	0.00	3.35
2175	2183	5.254115	GCCAATAAAAGTTACTCCCTCTGT	58.746	41.667	0.00	0.00	0.00	3.41
2176	2184	5.354513	GCCAATAAAAGTTACTCCCTCTGTC	59.645	44.000	0.00	0.00	0.00	3.51
2177	2185	5.880887	CCAATAAAAGTTACTCCCTCTGTCC	59.119	44.000	0.00	0.00	0.00	4.02
2178	2186	5.695424	ATAAAAGTTACTCCCTCTGTCCC	57.305	43.478	0.00	0.00	0.00	4.46
2179	2187	2.715763	AAGTTACTCCCTCTGTCCCA	57.284	50.000	0.00	0.00	0.00	4.37
2180	2188	2.950990	AGTTACTCCCTCTGTCCCAT	57.049	50.000	0.00	0.00	0.00	4.00
2181	2189	4.348020	AAGTTACTCCCTCTGTCCCATA	57.652	45.455	0.00	0.00	0.00	2.74
2182	2190	4.348020	AGTTACTCCCTCTGTCCCATAA	57.652	45.455	0.00	0.00	0.00	1.90
2183	2191	4.897051	AGTTACTCCCTCTGTCCCATAAT	58.103	43.478	0.00	0.00	0.00	1.28
2184	2192	6.039415	AGTTACTCCCTCTGTCCCATAATA	57.961	41.667	0.00	0.00	0.00	0.98
2185	2193	6.635021	AGTTACTCCCTCTGTCCCATAATAT	58.365	40.000	0.00	0.00	0.00	1.28
2186	2194	7.776745	AGTTACTCCCTCTGTCCCATAATATA	58.223	38.462	0.00	0.00	0.00	0.86
2187	2195	8.239478	AGTTACTCCCTCTGTCCCATAATATAA	58.761	37.037	0.00	0.00	0.00	0.98
2188	2196	8.532819	GTTACTCCCTCTGTCCCATAATATAAG	58.467	40.741	0.00	0.00	0.00	1.73
2189	2197	6.875469	ACTCCCTCTGTCCCATAATATAAGA	58.125	40.000	0.00	0.00	0.00	2.10
2190	2198	6.957020	ACTCCCTCTGTCCCATAATATAAGAG	59.043	42.308	0.00	0.00	0.00	2.85
2191	2199	5.721960	TCCCTCTGTCCCATAATATAAGAGC	59.278	44.000	0.00	0.00	0.00	4.09

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	2.568956	AGCTACCTTGCAGTCATTGAGA	59.431	45.455	0.00	0.00	34.99	3.27
46	47	2.892215	CCTCCCTCCGGAACTAGTAATC	59.108	54.545	5.23	0.00	37.86	1.75
47	48	2.960163	CCTCCCTCCGGAACTAGTAAT	58.040	52.381	5.23	0.00	37.86	1.89
123	124	4.458295	CCTCTTCATTTGCTCTGTTGACAT	59.542	41.667	0.00	0.00	0.00	3.06
174	175	3.026694	GAGCCCAAGTAATTGCCATCTT	58.973	45.455	0.00	0.00	0.00	2.40
310	311	1.173913	GCACCACACCCTTACAATCC	58.826	55.000	0.00	0.00	0.00	3.01
365	366	4.393834	TCTCTGATCTCCTTCACGATAGG	58.606	47.826	0.00	0.00	43.77	2.57
408	409	2.161609	CCTTTAAAGATGACGGTGCACC	59.838	50.000	26.78	26.78	0.00	5.01
425	426	3.773119	TCTAGATTTGTAGCCCGTCCTTT	59.227	43.478	0.00	0.00	0.00	3.11
581	587	4.928263	AGTTTACGGAGGGAGTAACTAGT	58.072	43.478	0.00	0.00	34.25	2.57
582	588	7.579761	ATTAGTTTACGGAGGGAGTAACTAG	57.420	40.000	0.00	0.00	34.25	2.57
584	590	9.646522	TTATATTAGTTTACGGAGGGAGTAACT	57.353	33.333	0.00	0.00	34.25	2.24
585	591	9.905171	CTTATATTAGTTTACGGAGGGAGTAAC	57.095	37.037	0.00	0.00	34.25	2.50
586	592	9.866655	TCTTATATTAGTTTACGGAGGGAGTAA	57.133	33.333	0.00	0.00	32.84	2.24
587	593	9.512588	CTCTTATATTAGTTTACGGAGGGAGTA	57.487	37.037	0.00	0.00	0.00	2.59
588	594	7.039853	GCTCTTATATTAGTTTACGGAGGGAGT	60.040	40.741	0.00	0.00	0.00	3.85
589	595	7.314393	GCTCTTATATTAGTTTACGGAGGGAG	58.686	42.308	0.00	0.00	0.00	4.30
590	596	6.072286	CGCTCTTATATTAGTTTACGGAGGGA	60.072	42.308	0.00	0.00	34.63	4.20
591	597	6.091437	CGCTCTTATATTAGTTTACGGAGGG	58.909	44.000	0.00	0.00	0.00	4.30
592	598	6.675987	ACGCTCTTATATTAGTTTACGGAGG	58.324	40.000	0.00	0.00	0.00	4.30
593	599	8.571461	AAACGCTCTTATATTAGTTTACGGAG	57.429	34.615	0.00	0.00	31.14	4.63
594	600	9.669353	CTAAACGCTCTTATATTAGTTTACGGA	57.331	33.333	0.00	0.00	34.29	4.69
595	601	8.909671	CCTAAACGCTCTTATATTAGTTTACGG	58.090	37.037	0.00	0.00	34.29	4.02
596	602	9.669353	TCCTAAACGCTCTTATATTAGTTTACG	57.331	33.333	0.00	0.00	34.29	3.18
608	614	9.401058	ACTACTTTAGTATCCTAAACGCTCTTA	57.599	33.333	0.00	0.00	38.05	2.10
609	615	8.189460	CACTACTTTAGTATCCTAAACGCTCTT	58.811	37.037	0.00	0.00	38.05	2.85
610	616	7.555554	TCACTACTTTAGTATCCTAAACGCTCT	59.444	37.037	0.00	0.00	38.05	4.09
611	617	7.701445	TCACTACTTTAGTATCCTAAACGCTC	58.299	38.462	0.00	0.00	38.05	5.03
612	618	7.636150	TCACTACTTTAGTATCCTAAACGCT	57.364	36.000	0.00	0.00	38.05	5.07
613	619	8.351461	AGATCACTACTTTAGTATCCTAAACGC	58.649	37.037	0.00	0.00	38.05	4.84
643	649	9.832445	CTCCCTTTGTAAACTAATATAAGAGCA	57.168	33.333	0.00	0.00	0.00	4.26
644	650	9.833917	ACTCCCTTTGTAAACTAATATAAGAGC	57.166	33.333	0.00	0.00	0.00	4.09
658	664	9.667107	CACTCTTCAATAATACTCCCTTTGTAA	57.333	33.333	0.00	0.00	0.00	2.41
659	665	8.822805	ACACTCTTCAATAATACTCCCTTTGTA	58.177	33.333	0.00	0.00	0.00	2.41
660	666	7.690256	ACACTCTTCAATAATACTCCCTTTGT	58.310	34.615	0.00	0.00	0.00	2.83
661	667	8.567285	AACACTCTTCAATAATACTCCCTTTG	57.433	34.615	0.00	0.00	0.00	2.77
662	668	9.014297	CAAACACTCTTCAATAATACTCCCTTT	57.986	33.333	0.00	0.00	0.00	3.11
663	669	8.383175	TCAAACACTCTTCAATAATACTCCCTT	58.617	33.333	0.00	0.00	0.00	3.95
664	670	7.918076	TCAAACACTCTTCAATAATACTCCCT	58.082	34.615	0.00	0.00	0.00	4.20
665	671	8.738645	ATCAAACACTCTTCAATAATACTCCC	57.261	34.615	0.00	0.00	0.00	4.30
834	841	0.609131	AAGGAGATGCGTGGGTTTGG	60.609	55.000	0.00	0.00	0.00	3.28
836	843	0.693049	AGAAGGAGATGCGTGGGTTT	59.307	50.000	0.00	0.00	0.00	3.27
846	853	4.464597	ACGCAGAAGACTAAAGAAGGAGAT	59.535	41.667	0.00	0.00	0.00	2.75
882	889	1.289800	GACAAGAGAACGGCGGAACC	61.290	60.000	13.24	0.00	0.00	3.62
910	917	3.454812	GGGGAAGGCTATGTCTTGTCTTA	59.545	47.826	0.00	0.00	0.00	2.10
911	918	2.239907	GGGGAAGGCTATGTCTTGTCTT	59.760	50.000	0.00	0.00	0.00	3.01
912	919	1.840635	GGGGAAGGCTATGTCTTGTCT	59.159	52.381	0.00	0.00	0.00	3.41
913	920	1.473434	CGGGGAAGGCTATGTCTTGTC	60.473	57.143	0.00	0.00	0.00	3.18
914	921	0.541863	CGGGGAAGGCTATGTCTTGT	59.458	55.000	0.00	0.00	0.00	3.16
922	929	1.751927	GAGACGACGGGGAAGGCTA	60.752	63.158	0.00	0.00	0.00	3.93
1150	1157	2.479750	GGGAGACGACGAGGTAGGC	61.480	68.421	0.00	0.00	0.00	3.93
1350	1357	1.650153	CGTCATGCAAAATCGCAAAGG	59.350	47.619	0.00	0.00	46.87	3.11
1622	1629	5.177327	CGTTGCTTTGCCTGAAAAATTACAT	59.823	36.000	0.00	0.00	0.00	2.29
1695	1702	4.885325	TGTAACAAGGTTCTTTTGGTCTCC	59.115	41.667	0.00	0.00	0.00	3.71
1817	1825	3.748083	TCCAGGAGAATGCTATGAATGC	58.252	45.455	0.00	0.00	29.87	3.56
1884	1892	3.432051	ATCGCAGCTGTCCGGCTAC	62.432	63.158	16.64	0.00	41.00	3.58
2100	2108	4.884164	AGCTGGAGCAAATAAAGGTACATC	59.116	41.667	0.65	0.00	45.16	3.06
2154	2162	5.880887	GGGACAGAGGGAGTAACTTTTATTG	59.119	44.000	0.00	0.00	0.00	1.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.