>input_sequence_87179
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----------------------------------------------ATGGAGGCAGCGGCGAACAAGCGCAGCGGCATCG
GGTTCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGCAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGTG
GACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCGCCTACCTCGTCGTCTCCCAGATCCTCCCTTCCGCCATCTAG--
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>chr5A_1_TraesCS5A01G111600
TTCGGGATCTCAATGACTGCAAGGTAGCTGAGGTGAAACACACTCCGATTACTAGTTCCGGAGGGAGGCAGCCTAGGTGG
ATAAGGCCACCGGAAAATTTTGCTAAAATCAGGGTCGACGGGGATGTCAACAGAGCAAATGAAGAGGGCTCTTTCAGTGC
AGTTTGCAGGGACGAAGATGGCAATTACTTGGGCTCATCAGCGATCAGATGCGCCGGCCTCACCGATCCGGCAACACTTG
AGGCGCTAGCTTGCCGGGAGGCTCTTGCACTCGCCCAAGATCTTTCATTATCCCATGTTATTGTTGCATCGGATTGTAAG
GGTGTGGTGCAGGATATAAAACTTGGCATTGGTGGGATGTATGCACCTATCGTGAAGGAGATCAGAGAGACAATGGAGAT
TTTCCAACGGTGCACCGTCATCTTTAAAGGACGGGCTACAAATCTAGAGGCACATAGCCTTGCTAAGCATGCTTTTGGTC
TGGACCCGGAGCACCATGTGTGGCTCATAA----A-CCCCCCAGATCTAAATTATATCCCCATGAACATTATCCAATAAA
GTGGAGTGTGTTTAGACTCAAAAAAAACTAGTTACTCCCTCCGTAAACTAATATAAGAGCGTTTAGGATACTAAAGTAGT
GATCTAAATGCTCTTATATTAGTTTACAAAGGGAGTATTATTGAAGAGTGTTTGATACACCAAAAGAAAAACAAAGGAAC
TATCGAAATATCAAAACAAGCT-TAAAAAACACACGCCTGGTGTGGGACTCGAACCCACAATCGTCTGATTAGAAGTCAG
ACGCCTTATCCATTAGGCCACAGGCGCTGTTTTGTCTGCGCCAAACCCACGCATCTCCTTCTTTAGTCTTCTGCGTTGCG
TCTTCTTGGGTTCCGCCGTTCTCTTGTCGCTATATCTAAGACAAGACATAGCCTTCCCCGTCGTCTCCCATCTCATCACA
TCGCCGTCGCCGGAGCGAGGTGCGGAAGAGGTCATCTGCGCGCGGGATGGAGGCAGCGGCGAACAAGCGCAGCGGCATCG
GGTTCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGCAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGTG
GACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCGCCTACCTCGTCGTCTCCCAGATCCTCCCTTCCGCCATCTAGAT
CGGTCGCCCGTCGTCGTTTGCTTCTGGATGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGGTATAGTCACCTCCTC
CTTGTCTCGTTTGATGCAATGGATTCCGCGTCTGTAACAATCAAAATATGAGACGACAAGTAGCTCGGATGCTGTTCCTT
TGCGATTTTGCATGACGAATTGTAATGCCCCAGTCTTGCCGTGTTCTAGAACAATAAAATGCTTCAGTGTTCCTTTGTTC
ATGGCTTGAACTCCTGACTGGATGGTGTCCATTATATACTATCAGATTGATTGTTCATGTTTATGTTATTTATATGTTGA
AGATGGATAATATTTCCAGGAACAAGAAGCTCAGGTGAATCTGAAGCGTCCCTTCTTCAGATGAGACCACAAGGCTTCAT
GCTTTCTGCCTTGGCTTCTTTCAAAATCATGTAATTTTTCAGGCAAAGCAACGAGTTAATTTCGACCAAGATTGACCTTT
TCCATTTCCTTCCCAAGAGGAGGAGACCAAAA-GAACCTTGTTACAACATTTCACATCAATAGTCGCATATCATCTGACT
AGAGATGAGAAACTCTCCATGGGGCTACCAGCTAACAGCTACAGTGGTGATCTGATCAGTTAGCGCATTCATAGCATTCT
CCTGGATAACCAGATATTCACAGCAATGTTTTGCAGTTGAAGTTTACGGCAGTAGCCGGACAGCTGCGATGGATGGGATC
TTCTCTTTGAGCTTCTGTGCTATAGCAACTCGGACGGCCGCCACACCTGCTGCAGGGCCCTTGAGTTGGACTTTCACGAA
GAATTTGTTGATCGCGACAAACCTGAGATTACCGCCTCCTGCACCGGTGAGGTATGGCCTGATCTCATCGAGTACCTGCC
ATTGGGTGAAAGGAAGGAATTTTCAAAGATGTACCTTTATTTGCTCCAGCTACTGGTTTTCGCCCATATTATGGAAAGGG
CCAATAAAAGTTACTCCCTCTGTCCCATAATATAAGAGC
>chr7A_1
TTCGGGAGCTCAATGACTGCAAGGTAGCTGAGGTGAAACACACTCCAGTTACTAGTTCCGGAGGGAGGCAGCCTAGGTGG
ATAAGGCCACTGGAAAATTTTGCTAAAATCAGGGTCGACGGGGCTGTCAACAGAGCAAATGAAGAGGGCTCTTTCAGTGC
AGTTTGCAGGGACGGAGATGGCAATTACTTGGGCTCATCAGCGATCAGATGCGCCGGCCTCACCGATCCGGCAACACTTG
AGGCGCTAGCTTGCCGGGAGGCTCTTGCACTCGCCCAAGATCTTTCATTATCCCATGTTATTGTTGCATCAGATTGTAAG
GGTGTGGTGCAGGATATAAAACTTGGCATTGGTGGGATGTATGCATCTATCGTGAAGGAGATCAGAGAGACAATGGAGAT
TTTCCAACAGTGCACCGTCATCTTTGAAGGACGGGCTACAAATCTAGAGGCACATAGCCTTGCTAAGCATGCTTTTGGTC
TAGACCCAGAGTACCATGTGTGGCTCATAA----A-CCCCCCAGATCTAAATTGTATCCCCATGAACATTATCCAATAAA
GTGAAGTGTGTTTAGACTCAAAAAAA------------------------------------------------------
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>chr6D_3
CGTGAA--CTCAATGACTGTAAGCCAGTTGAGGTGAAGCACAATCCAGTTACCCGATCCAGCGTGAGGAAGCCTAGGTGG
ATAAGGCCACTGGAGAACTTTGCAAATATCCGGGTCGACGGGGCTGTAAATAGAGCAAATGATGAAGGCTCCTTCAGTGC
AGTTTGCAGGGACGGAGACGGCAATCACTTGGGCTCGTCAGTGATCAGATGCGTCGGCCTCACCGATCCTGCTACGCTCG
AGGCATTAGCTTGTCGGGAGGCTCTTGCACTTGCCCAAGATCTATC--TATCTCATGTTATAGTTGCCTCAGACTGCAAG
GGTGTGGTGCAGGATATCAAGCTTGGCATTGGTGGGATGTATGCAACCATTGTGAGGGAGATGAGAGAGACGATGGAGCT
TTTCCAACAATGTACTGTCATCTTTGAAGGACGGGAAACCAATCAAGAGGCACATAGCCTCGCTAAGCATGCTTTTGGTC
TGGACCCGGGGCACCATGTGTGGCCAATAA----ACCCCCCCAGATTTGAATTGTATCCCTATGAACATTATTCAATAAA
GTGAAGTGTGTTTAGACTAAAAAAA-------------------------------------------------------
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>chr4D_65
----------------------------------------------------------------GAGGAAGCCCAGATGG
ATAAGGCCTCCGGAGAACTTTGCAAAAATCCGTGTTGATGGGGCCGTCAATAGAGCAAATGATGAAGGTTCTTACAGTGC
AGTGTGTAGGGACGGAGAAGGCAACTTCTTGGGCGCGTCGGCCATCAGATGTGCCGGCCTCACTGAACCGGCTACGCTTG
AAGCATTAGCTTGCCGGGAAGCTCTTGCGCTTGCTCAAGATCTCTCGTTATCCCATGTTATAGTTGCTTCTGACTCCAAA
GGGGTGGTGCAGGATATCAAGCTAGGCACTGGTGGGATGTATGCAACCATTGTGAAGGAGATTAGAGAGACAATGGAGCT
TTTCCATCAATGTTCCGTCGTCTTTGAAGGACGGGAAACCAATCAAGAGGCACATAGCCTTGCTAAGCATGCTTTTGGTC
TGGATCCGGGGCGCCACATGTGGCTTTTAA----ACCCCCCCAGATTTGAATTGTATCCCTATGAACATTATTCAATAAA
GTAAAGTGTGTTTAGACTCAAAAAAA------------------------------------------------------
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>chr7D_65
----------------------------------------------------------------GAGGAAGCCTAGATGG
ATAAGGCCTCCGGAGAACTTTGTAAAAATCCGTGTTGATGGGGCCGTCAATAGAGCAAATGATGAAGGTTCTTACTGTGC
AGTGTGTAGGGACGGAGAAGGCAACTTCTTGGGCGCGTCGGCCATCAGATGTGCCGGCCTCACTGAACCGGCTACGCTTG
AAGCATTAGCTTGCCGGGAAGCTCTTGCGCTTGCTCAAGATCTCTCGTTATCCCATGTTATAGTTGCTTCTGACTCCAAA
GAGGTGGTGCAGGATATCAAGTTAGGCACTGGTGGGATGTATGCAACCATTGTGAAGGAGATTAGAGAGACAATGGAGCT
TTTCCATCAATGTTCCGTCATCTTTGAAGGACGAGAAACCAATCAAGAGGCACATAGCCTTGCTAAGCATGCTTTTGGTC
TGGATCCGGGGCGCCACTTGTGGCTTTTAA----ACCCCCCCAGATTTGAATTGTATCCCTATGAACATTATTCAATAAA
GTAAAGTGTGTTTAGACCTAAAAAAAC-----------------------------------------------------
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>chr1D_65
----------------------------------------------------------------GAGGAAGCCCAGATGG
ATAAGGCCTCCGGAGAACTTTGTAAAAATCCGTGTTGATGGGGCCGTCAATAGAGCAAATGATGAAGGTTCTTACAGTGC
AGTGTGTAGGGACGGAGAAGGCAACTTCTTGGGCGCGTCGGCCATCAGATGTGCCAGCCTCACTGAACCGGCTACGCTTG
AAGCATTAGCTTGCCGGGAAGCTCTTGCGCTTGCTCAAGATCTCTCGTTATCCCATGTTATAGTTGCTTCTGACTCCAAA
GGGGTGGTGCAGGATATCAAGTTAGGCATTGGTGGGATGTATGCAACCATTGTGAAAGAGATTAGAGAGACAATGGAGCT
TTTCCATCAATGTTTCGTCATCTTTGAAGGACGGGAAACCAATCAAGAGGCACATAGCCTTGCTAAGCATGCTTTTGGTT
TGGATCCGGGGCGCCACTTGTGGCTTTTAAACCCA-CCCCCCAGATTTGAATTGTATCCCTATGAACATTATTCAATAAA
GTAAAGTGTGTTTAGACTAAAAAAAAC-----------------------------------------------------
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>chr5B_672
ATTCAT--------------------------------------------------------------------------
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-----------------------------------------TGAAGAGTGTTTGATATACCAAAAGTAAAACAAAGGAAC
TATCGAAATATCAAAACATG------------CACGCCTG--GTGGGACTCGAACCCACAATCGTCTGATTAGAAGTCAG
ACGCCTTATCCATTAGGCCACAGGCGCTGCTTTGTCTGCGTCCAACCCACGCCTCTCCTTCTTTAGTCTTCTGCGCTGCG
TCTTCTTGCGTTCCGCCGTTCTCTTGTCGTTATATC-----CAAGACACAGCCTTCCCCGTCGTCTCCCATCTCATCACA
TCGCCGTCGCCGGAGCGAGGTGCGGAAGAGGTCATCTGCGCTCGGGATGGAGGCAGTGGCGAACAAGCGCAGCGGCATCG
GATCCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGTAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGTG
GACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCAGATCCTCCCTTCCGCCATCTAGAT
CGG-CGCCCGTCGTCGTTTGCTTCTGGATGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGGTATGGTCACCTCCTC
CTTGTCTCGTTTGATGCAATGGATTCCGCCTCTGTAACAATCAAAATATGAGACGACAAGTAGCTCGGATGCTGTTTCTT
TGCGATTTTGCATGACGAATTGTAATGCCCCAGTCTTGCCGTGTTCTAGAACAATAAAATGCTTCAGTGTTCCTTTGTTC
ATTGCTTGAAC----GACTGGATGGTGTCCATTATATA---TCAGATTGATCGTTCATGTTTACGTTATTAATATGTTGG
AGATGGATAATATTTCCAGGAACAAGAAGCTCAGGTGCATCTGAAGCGTCCCTTCTTCAGATGAGACCACAAGGCTTCCT
GCTTTCTGCCTTGGCTTCTTTCAAAATTG------------------GCAACGACTTAATTTCGACCAAGATTGACC-TT
TCCATTTCCTTCCCAAGAGGAAGAGACCAAAAAGAACCTTGTTACAACATTTCACATCAATAGTCGCATATCATCTGACT
AGAGATGAGAAACTCTCCATGGGGCTACCAGCTACCAGCTACAGTGGTGATCTGATCAGTTAGCACATTCATAGCATTTT
CCTGGATAACCAGATATTCACAGCAGTGTTTTGCAGTTGAAGCTTACGGCAATAGCCGGACAGCTGCGATGGATGGGATC
TTCTCTCTGAGCTTCTGTGCTACAGCAACTCGGACGGCCGCCACACCTGCTGCAGGGCCCTTGAGTTGGACTTTCACGAA
GAATTTGTTGATCGCGACAAACCTGAGATTACCGCCTCCTGCGCCGGTGAGGTATGGCCTGATCTCATCGAGTACCTGCC
ATTGGGTGAAAGGAAGTAATTTTCAAATATGTACCTTTAGTTGCTCCAGCTACTGGTTTTCGCCCATATTATGGAAAGGG
CAAATAAATGTTA--------------------------
>chr5D_672
ATTCAT--------------------------------------------------------------------------
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-----------------------------------------TGAAGAGTGTTTGATACACCAAAAGAAAAACAAAGGAAC
TACCAAAATATCAAAACATTCTGTAAAAAACACACGCCTG--GTGGGACTCGAACCCACAATCGTCTGATTAGAAGTCAG
ACGCCTTATCCATTAGGCCACAGGCGCTATTTTGTCTGCGTCCAACCCACGCCTCTCCTTCTTTAGTCTCCTGCGTTGCG
TCTTCTTGCGTTCCGCCGTTCTCTTGTCGTTATATC-----CAAGACAAACACTTCCCCGTCGTCTCCCATCTCATCACA
TCGCCGTCGCCGGAGCGAGGTGCGGAAGAGGTCATCTGCGCGAGGGATGGAGGCAGCGGCGAACAAGCGCAGCGGCATCG
GGTCCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGCAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGTG
GACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCAGGTCCTCCCTTCCGCCATCTAGAT
CGGTCGCCCGTCGTCGTTTGCTTCTGGATGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGGTATGGTCACCTCCTC
CTTGTCTCGTTTGATGCAATGGATTCCGCGTCTGTAACAATCAAAATATGAGACGACAAGTAGCTCGGATGCTGTTTCTT
TGCGATTTTGCATGACGAATTGTAATGCCCCAGTCTTGCCGTGTTCTAGAACAATAAAATGCTTCAGTGTTCCTTTGTTC
ATGGCTTGG-CTCCTGACTGGATGGTGTCCATTATATA---TCAGATTGATTGTTCATGTTTACGTT--TTATATGTTGA
AGATGGATAATATTTCCAGGAACAAGAAGCTCAGGTGAAT--------------------------------------CT
GCTTTCCGCCTTGGCTTCTTTCAAAATCGTGTAATTTTTCAGGCAAAGCAACGAGTTAATTTCGACCAAGATTGACCTTT
TCCATTTCCTTCCCAAGAGGATGAGACCAAAA-GAACCTTGTTACAACATTTCACATCAATAGTCGCATATCATCTGACT
AGAGATGAGAAACTCTCCATGGGGCTACCAGCTAACAGCTACAGTGGTGATCTGATCAGTTAGCACATTCATAGCATTTT
CCTGGATAACCAGATATTCACAGCAATGCTTTGCAGTTGAAGCTTACGGCAATAGCCGGACAGCTGTGATGGATGGGATC
TTCTCTCTGAGCTTCTTTGCTACAGCAACTCGGACGGCCGCCACACCTGCTGCAGGGCCCTTGAGTTGGACTTTCACGAA
GAATTTGTTGATCGCAACAAACCTGAGATTACCGCCTCCAGCGCCGGTGAGGTATGGCCTGATCTCATCGAGTACCTGCC
ATTGGGTGAAAGGAAGGAATTTTCAAATATGTACCTTTAGTTGCTCTAGCTACTGGTTTTCGCCCATATTATGGTAAGGG
CAAATAAAAGTTA--------------------------
>SNPs
-------S--------------------------------------SS--------------------------------
-------------------------------------------S------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------------------------------------------S---------
---------------------------------------------S----------------------------------
--------S----------------S------------------------------------------------------
-----------------------------------------------------S--------------------------
---S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
------------------S---------------------SS--------------------------------------
----------------------------------------S-S---------S---------------------------
--------S--------------------S------SSSSS-------S-------------------------------
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---S----------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------S-----------
----------------------------------------------------------------------------S---
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--------------------------------------SSS----------------------S----------------
------------------------------------------------------------------------------S-
----------------------------S---------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------------------S-------------S-
------------------------------------------S--------S----------------------------
------S---------------S---------------------------------------------------------
------------------------------------------S-------------------------------------
---------------------------S-----------S----------------------------------------
-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_366
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-------------------------GCATTGGTGGGATGTATGCAC----------------------------------
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>reverse_1357
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----------------------------------------------------------------------------CCTT
TGCGATTTTGCATGACG---------------------------------------------------------------
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