Multiple sequence alignment - TraesCS5A01G103400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G103400 chr5A 100.000 3758 0 0 1 3758 159531964 159535721 0.000000e+00 6940.0
1 TraesCS5A01G103400 chr5A 92.945 567 35 4 1 567 25489751 25490312 0.000000e+00 821.0
2 TraesCS5A01G103400 chr5A 90.000 210 10 1 361 559 25606851 25607060 1.040000e-65 261.0
3 TraesCS5A01G103400 chr5B 94.818 2335 76 14 1455 3758 146365832 146368152 0.000000e+00 3600.0
4 TraesCS5A01G103400 chr5B 94.574 645 23 7 804 1447 146364676 146365309 0.000000e+00 987.0
5 TraesCS5A01G103400 chr5D 93.810 937 27 13 1455 2391 134916579 134917484 0.000000e+00 1380.0
6 TraesCS5A01G103400 chr5D 96.384 802 23 2 2420 3218 134917481 134918279 0.000000e+00 1315.0
7 TraesCS5A01G103400 chr5D 95.216 648 17 7 804 1447 134915448 134916085 0.000000e+00 1013.0
8 TraesCS5A01G103400 chr5D 95.137 329 8 5 3212 3534 134918639 134918965 2.590000e-141 512.0
9 TraesCS5A01G103400 chr5D 90.310 258 22 2 567 824 493424563 493424309 6.010000e-88 335.0
10 TraesCS5A01G103400 chr5D 88.584 219 4 5 3561 3758 134918965 134919183 2.900000e-61 246.0
11 TraesCS5A01G103400 chr1D 95.929 565 23 0 2 566 191251894 191251330 0.000000e+00 917.0
12 TraesCS5A01G103400 chr1D 94.724 398 20 1 1 398 191271967 191271571 5.330000e-173 617.0
13 TraesCS5A01G103400 chr1D 95.977 174 7 0 394 567 191258750 191258577 2.210000e-72 283.0
14 TraesCS5A01G103400 chr6A 95.357 560 23 2 1 560 3482081 3482637 0.000000e+00 887.0
15 TraesCS5A01G103400 chr1A 94.599 574 24 2 1 567 82921495 82920922 0.000000e+00 881.0
16 TraesCS5A01G103400 chr1A 92.457 464 30 2 1 464 386246082 386246540 0.000000e+00 658.0
17 TraesCS5A01G103400 chr1A 92.457 464 29 3 1 464 386253603 386254060 0.000000e+00 658.0
18 TraesCS5A01G103400 chr1A 86.780 590 48 17 1 567 495746999 495746417 6.850000e-177 630.0
19 TraesCS5A01G103400 chr7D 95.670 485 17 4 84 566 131796085 131795603 0.000000e+00 776.0
20 TraesCS5A01G103400 chr7D 91.667 408 33 1 64 470 373500021 373500428 7.050000e-157 564.0
21 TraesCS5A01G103400 chr7D 91.020 245 21 1 567 811 543554620 543554377 2.800000e-86 329.0
22 TraesCS5A01G103400 chr7A 91.765 255 21 0 567 821 16625826 16625572 4.620000e-94 355.0
23 TraesCS5A01G103400 chr3A 91.600 250 20 1 567 816 38326028 38326276 9.990000e-91 344.0
24 TraesCS5A01G103400 chr3A 91.393 244 21 0 567 810 62420260 62420017 6.010000e-88 335.0
25 TraesCS5A01G103400 chr3A 89.558 249 26 0 570 818 517776469 517776221 2.180000e-82 316.0
26 TraesCS5A01G103400 chr4A 91.020 245 22 0 567 811 30354390 30354634 7.780000e-87 331.0
27 TraesCS5A01G103400 chr7B 90.361 249 18 3 567 815 541717635 541717393 4.680000e-84 322.0
28 TraesCS5A01G103400 chr6B 88.211 246 26 3 567 811 257330970 257331213 1.320000e-74 291.0
29 TraesCS5A01G103400 chr6B 92.157 51 3 1 1 50 418328738 418328688 1.870000e-08 71.3
30 TraesCS5A01G103400 chr6B 100.000 28 0 0 3709 3736 610300049 610300076 7.000000e-03 52.8
31 TraesCS5A01G103400 chr3D 87.861 173 20 1 388 559 215878112 215877940 6.360000e-48 202.0
32 TraesCS5A01G103400 chr4B 87.117 163 21 0 405 567 556532043 556532205 6.410000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G103400 chr5A 159531964 159535721 3757 False 6940.0 6940 100.0000 1 3758 1 chr5A.!!$F3 3757
1 TraesCS5A01G103400 chr5A 25489751 25490312 561 False 821.0 821 92.9450 1 567 1 chr5A.!!$F1 566
2 TraesCS5A01G103400 chr5B 146364676 146368152 3476 False 2293.5 3600 94.6960 804 3758 2 chr5B.!!$F1 2954
3 TraesCS5A01G103400 chr5D 134915448 134919183 3735 False 893.2 1380 93.8262 804 3758 5 chr5D.!!$F1 2954
4 TraesCS5A01G103400 chr1D 191251330 191251894 564 True 917.0 917 95.9290 2 566 1 chr1D.!!$R1 564
5 TraesCS5A01G103400 chr6A 3482081 3482637 556 False 887.0 887 95.3570 1 560 1 chr6A.!!$F1 559
6 TraesCS5A01G103400 chr1A 82920922 82921495 573 True 881.0 881 94.5990 1 567 1 chr1A.!!$R1 566
7 TraesCS5A01G103400 chr1A 495746417 495746999 582 True 630.0 630 86.7800 1 567 1 chr1A.!!$R2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 763 0.035820 GTGGGATGTTGTTCCGCCTA 60.036 55.0 0.00 0.0 36.58 3.93 F
1314 1348 0.111446 TCTTGCCGGATTGGGTTCAA 59.889 50.0 5.05 0.0 38.63 2.69 F
1452 1486 0.452184 CACTACTCAGACATCGCCGT 59.548 55.0 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 2289 1.884926 GAGCGGCTTGGAATCGGAG 60.885 63.158 2.97 0.0 0.00 4.63 R
2732 3288 1.935873 CCATCTGCCACTGTACAATCG 59.064 52.381 0.00 0.0 0.00 3.34 R
3355 4280 1.514678 GGTGACCAAACTGCATCGCA 61.515 55.000 0.00 0.0 36.92 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 116 0.171903 GGCTGCAGTGTAAATGGCTG 59.828 55.000 16.64 0.00 28.90 4.85
129 137 4.546674 TGAGAGCCCATCTGTACAATAGA 58.453 43.478 0.00 0.00 38.84 1.98
131 139 6.314917 TGAGAGCCCATCTGTACAATAGATA 58.685 40.000 0.00 0.00 38.84 1.98
310 318 8.779303 TGACTCAGCTTGAATTTTTCGTAAATA 58.221 29.630 0.00 0.00 0.00 1.40
562 593 5.247564 ACTGTAGCTTAATTATCCGGGCATA 59.752 40.000 0.00 0.00 0.00 3.14
567 598 5.240844 AGCTTAATTATCCGGGCATAACAAC 59.759 40.000 0.00 0.00 0.00 3.32
568 599 5.240844 GCTTAATTATCCGGGCATAACAACT 59.759 40.000 0.00 0.00 0.00 3.16
569 600 6.627395 TTAATTATCCGGGCATAACAACTG 57.373 37.500 0.00 0.00 0.00 3.16
570 601 2.631160 TATCCGGGCATAACAACTGG 57.369 50.000 0.00 0.00 0.00 4.00
571 602 0.751643 ATCCGGGCATAACAACTGGC 60.752 55.000 0.00 0.00 38.38 4.85
572 603 1.677300 CCGGGCATAACAACTGGCA 60.677 57.895 0.00 0.00 40.70 4.92
573 604 1.656818 CCGGGCATAACAACTGGCAG 61.657 60.000 14.16 14.16 40.70 4.85
574 605 1.512694 GGGCATAACAACTGGCAGC 59.487 57.895 15.89 0.00 40.70 5.25
575 606 1.250154 GGGCATAACAACTGGCAGCA 61.250 55.000 15.89 0.00 40.70 4.41
576 607 0.819582 GGCATAACAACTGGCAGCAT 59.180 50.000 15.89 0.03 38.90 3.79
577 608 2.023673 GGCATAACAACTGGCAGCATA 58.976 47.619 15.89 3.01 38.90 3.14
578 609 2.624838 GGCATAACAACTGGCAGCATAT 59.375 45.455 15.89 5.34 38.90 1.78
579 610 3.820467 GGCATAACAACTGGCAGCATATA 59.180 43.478 15.89 3.76 38.90 0.86
580 611 4.320494 GGCATAACAACTGGCAGCATATAC 60.320 45.833 15.89 3.16 38.90 1.47
581 612 4.516698 GCATAACAACTGGCAGCATATACT 59.483 41.667 15.89 0.00 0.00 2.12
582 613 5.561532 GCATAACAACTGGCAGCATATACTG 60.562 44.000 15.89 5.80 40.80 2.74
604 635 8.696043 ACTGCTATTTTATATGATGCTTTCCA 57.304 30.769 0.00 0.00 0.00 3.53
605 636 9.135189 ACTGCTATTTTATATGATGCTTTCCAA 57.865 29.630 0.00 0.00 0.00 3.53
606 637 9.403110 CTGCTATTTTATATGATGCTTTCCAAC 57.597 33.333 0.00 0.00 0.00 3.77
607 638 9.135189 TGCTATTTTATATGATGCTTTCCAACT 57.865 29.630 0.00 0.00 0.00 3.16
608 639 9.971922 GCTATTTTATATGATGCTTTCCAACTT 57.028 29.630 0.00 0.00 0.00 2.66
613 644 8.800370 TTATATGATGCTTTCCAACTTGTACA 57.200 30.769 0.00 0.00 0.00 2.90
614 645 7.886629 ATATGATGCTTTCCAACTTGTACAT 57.113 32.000 0.00 0.00 0.00 2.29
615 646 8.978874 ATATGATGCTTTCCAACTTGTACATA 57.021 30.769 0.00 0.00 0.00 2.29
616 647 7.701539 ATGATGCTTTCCAACTTGTACATAA 57.298 32.000 0.00 0.00 0.00 1.90
617 648 7.144722 TGATGCTTTCCAACTTGTACATAAG 57.855 36.000 0.00 0.00 0.00 1.73
618 649 6.939730 TGATGCTTTCCAACTTGTACATAAGA 59.060 34.615 0.00 0.00 0.00 2.10
619 650 7.611467 TGATGCTTTCCAACTTGTACATAAGAT 59.389 33.333 0.00 0.00 0.00 2.40
620 651 7.144722 TGCTTTCCAACTTGTACATAAGATG 57.855 36.000 0.00 0.00 32.24 2.90
621 652 6.714810 TGCTTTCCAACTTGTACATAAGATGT 59.285 34.615 0.00 0.00 46.92 3.06
622 653 7.094805 TGCTTTCCAACTTGTACATAAGATGTC 60.095 37.037 0.00 0.00 43.67 3.06
623 654 7.094805 GCTTTCCAACTTGTACATAAGATGTCA 60.095 37.037 0.00 0.00 43.67 3.58
624 655 8.862325 TTTCCAACTTGTACATAAGATGTCAT 57.138 30.769 0.00 0.00 43.67 3.06
625 656 8.492673 TTCCAACTTGTACATAAGATGTCATC 57.507 34.615 4.52 4.52 43.67 2.92
626 657 6.756542 TCCAACTTGTACATAAGATGTCATCG 59.243 38.462 7.18 0.00 43.67 3.84
627 658 6.756542 CCAACTTGTACATAAGATGTCATCGA 59.243 38.462 7.18 0.35 43.67 3.59
628 659 7.439356 CCAACTTGTACATAAGATGTCATCGAT 59.561 37.037 7.18 0.00 43.67 3.59
629 660 8.820933 CAACTTGTACATAAGATGTCATCGATT 58.179 33.333 7.18 0.33 43.67 3.34
630 661 8.581057 ACTTGTACATAAGATGTCATCGATTC 57.419 34.615 7.18 0.00 43.67 2.52
631 662 8.197439 ACTTGTACATAAGATGTCATCGATTCA 58.803 33.333 7.18 0.00 43.67 2.57
632 663 8.579682 TTGTACATAAGATGTCATCGATTCAG 57.420 34.615 7.18 0.39 43.67 3.02
633 664 7.716612 TGTACATAAGATGTCATCGATTCAGT 58.283 34.615 7.18 5.76 43.67 3.41
634 665 8.197439 TGTACATAAGATGTCATCGATTCAGTT 58.803 33.333 7.18 0.00 43.67 3.16
635 666 7.706281 ACATAAGATGTCATCGATTCAGTTC 57.294 36.000 7.18 0.00 39.92 3.01
636 667 6.703607 ACATAAGATGTCATCGATTCAGTTCC 59.296 38.462 7.18 0.00 39.92 3.62
637 668 3.711086 AGATGTCATCGATTCAGTTCCG 58.289 45.455 7.18 0.00 0.00 4.30
638 669 3.131223 AGATGTCATCGATTCAGTTCCGT 59.869 43.478 7.18 0.00 0.00 4.69
639 670 2.876091 TGTCATCGATTCAGTTCCGTC 58.124 47.619 0.00 0.00 0.00 4.79
640 671 2.230266 TGTCATCGATTCAGTTCCGTCA 59.770 45.455 0.00 0.00 0.00 4.35
641 672 3.119137 TGTCATCGATTCAGTTCCGTCAT 60.119 43.478 0.00 0.00 0.00 3.06
642 673 3.865745 GTCATCGATTCAGTTCCGTCATT 59.134 43.478 0.00 0.00 0.00 2.57
643 674 3.865164 TCATCGATTCAGTTCCGTCATTG 59.135 43.478 0.00 0.00 0.00 2.82
644 675 1.999735 TCGATTCAGTTCCGTCATTGC 59.000 47.619 0.00 0.00 0.00 3.56
645 676 1.062587 CGATTCAGTTCCGTCATTGCC 59.937 52.381 0.00 0.00 0.00 4.52
646 677 1.401905 GATTCAGTTCCGTCATTGCCC 59.598 52.381 0.00 0.00 0.00 5.36
647 678 0.400213 TTCAGTTCCGTCATTGCCCT 59.600 50.000 0.00 0.00 0.00 5.19
648 679 1.271856 TCAGTTCCGTCATTGCCCTA 58.728 50.000 0.00 0.00 0.00 3.53
649 680 1.207089 TCAGTTCCGTCATTGCCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
650 681 0.541863 AGTTCCGTCATTGCCCTAGG 59.458 55.000 0.06 0.06 0.00 3.02
651 682 0.539986 GTTCCGTCATTGCCCTAGGA 59.460 55.000 11.48 0.00 0.00 2.94
652 683 1.065709 GTTCCGTCATTGCCCTAGGAA 60.066 52.381 11.48 0.00 35.64 3.36
653 684 1.281419 TCCGTCATTGCCCTAGGAAA 58.719 50.000 11.48 4.70 0.00 3.13
654 685 1.209504 TCCGTCATTGCCCTAGGAAAG 59.790 52.381 11.48 0.00 0.00 2.62
655 686 1.065418 CCGTCATTGCCCTAGGAAAGT 60.065 52.381 11.48 0.00 0.00 2.66
656 687 2.169769 CCGTCATTGCCCTAGGAAAGTA 59.830 50.000 11.48 0.00 0.00 2.24
657 688 3.370103 CCGTCATTGCCCTAGGAAAGTAA 60.370 47.826 11.48 0.00 0.00 2.24
658 689 4.258543 CGTCATTGCCCTAGGAAAGTAAA 58.741 43.478 11.48 0.00 0.00 2.01
659 690 4.881850 CGTCATTGCCCTAGGAAAGTAAAT 59.118 41.667 11.48 0.00 0.00 1.40
660 691 6.053005 CGTCATTGCCCTAGGAAAGTAAATA 58.947 40.000 11.48 0.00 0.00 1.40
661 692 6.540914 CGTCATTGCCCTAGGAAAGTAAATAA 59.459 38.462 11.48 0.00 0.00 1.40
662 693 7.254795 CGTCATTGCCCTAGGAAAGTAAATAAG 60.255 40.741 11.48 0.00 0.00 1.73
663 694 7.556635 GTCATTGCCCTAGGAAAGTAAATAAGT 59.443 37.037 11.48 0.00 0.00 2.24
664 695 8.113462 TCATTGCCCTAGGAAAGTAAATAAGTT 58.887 33.333 11.48 0.00 0.00 2.66
665 696 7.696992 TTGCCCTAGGAAAGTAAATAAGTTG 57.303 36.000 11.48 0.00 0.00 3.16
666 697 6.184789 TGCCCTAGGAAAGTAAATAAGTTGG 58.815 40.000 11.48 0.00 0.00 3.77
667 698 5.067413 GCCCTAGGAAAGTAAATAAGTTGGC 59.933 44.000 11.48 0.00 0.00 4.52
668 699 6.184789 CCCTAGGAAAGTAAATAAGTTGGCA 58.815 40.000 11.48 0.00 0.00 4.92
669 700 6.095021 CCCTAGGAAAGTAAATAAGTTGGCAC 59.905 42.308 11.48 0.00 0.00 5.01
670 701 6.657541 CCTAGGAAAGTAAATAAGTTGGCACA 59.342 38.462 1.05 0.00 0.00 4.57
671 702 7.339466 CCTAGGAAAGTAAATAAGTTGGCACAT 59.661 37.037 1.05 0.00 39.30 3.21
672 703 6.924111 AGGAAAGTAAATAAGTTGGCACATG 58.076 36.000 0.00 0.00 39.30 3.21
673 704 6.493458 AGGAAAGTAAATAAGTTGGCACATGT 59.507 34.615 0.00 0.00 39.30 3.21
674 705 7.015195 AGGAAAGTAAATAAGTTGGCACATGTT 59.985 33.333 0.00 0.00 39.30 2.71
675 706 7.655732 GGAAAGTAAATAAGTTGGCACATGTTT 59.344 33.333 0.00 0.00 39.30 2.83
676 707 8.956533 AAAGTAAATAAGTTGGCACATGTTTT 57.043 26.923 0.00 0.00 39.30 2.43
679 710 9.471084 AGTAAATAAGTTGGCACATGTTTTAAC 57.529 29.630 0.00 1.61 39.30 2.01
680 711 7.401484 AAATAAGTTGGCACATGTTTTAACG 57.599 32.000 0.00 0.00 39.30 3.18
681 712 4.640789 AAGTTGGCACATGTTTTAACGA 57.359 36.364 0.00 0.00 39.30 3.85
682 713 4.223320 AGTTGGCACATGTTTTAACGAG 57.777 40.909 0.00 0.00 39.30 4.18
683 714 3.630312 AGTTGGCACATGTTTTAACGAGT 59.370 39.130 0.00 0.00 39.30 4.18
684 715 3.889196 TGGCACATGTTTTAACGAGTC 57.111 42.857 0.00 0.00 0.00 3.36
685 716 3.206964 TGGCACATGTTTTAACGAGTCA 58.793 40.909 0.00 0.00 0.00 3.41
686 717 3.818210 TGGCACATGTTTTAACGAGTCAT 59.182 39.130 0.00 0.00 0.00 3.06
687 718 4.158384 GGCACATGTTTTAACGAGTCATG 58.842 43.478 0.00 0.00 40.80 3.07
688 719 3.603770 GCACATGTTTTAACGAGTCATGC 59.396 43.478 0.00 0.00 39.27 4.06
689 720 4.613622 GCACATGTTTTAACGAGTCATGCT 60.614 41.667 0.00 0.00 39.27 3.79
690 721 5.451908 CACATGTTTTAACGAGTCATGCTT 58.548 37.500 0.00 0.00 39.27 3.91
691 722 6.598525 CACATGTTTTAACGAGTCATGCTTA 58.401 36.000 0.00 0.00 39.27 3.09
692 723 7.243487 CACATGTTTTAACGAGTCATGCTTAT 58.757 34.615 0.00 0.00 39.27 1.73
693 724 7.216881 CACATGTTTTAACGAGTCATGCTTATG 59.783 37.037 0.00 0.00 39.27 1.90
694 725 7.119116 ACATGTTTTAACGAGTCATGCTTATGA 59.881 33.333 0.00 0.00 39.27 2.15
717 748 7.441017 TGACTCAAAAGAATTAATTTGGTGGG 58.559 34.615 1.43 1.95 37.19 4.61
718 749 7.288852 TGACTCAAAAGAATTAATTTGGTGGGA 59.711 33.333 1.43 0.00 37.19 4.37
719 750 8.206126 ACTCAAAAGAATTAATTTGGTGGGAT 57.794 30.769 1.43 0.00 37.19 3.85
720 751 8.096414 ACTCAAAAGAATTAATTTGGTGGGATG 58.904 33.333 1.43 0.00 37.19 3.51
721 752 7.972301 TCAAAAGAATTAATTTGGTGGGATGT 58.028 30.769 1.43 0.00 37.19 3.06
722 753 8.435982 TCAAAAGAATTAATTTGGTGGGATGTT 58.564 29.630 1.43 0.00 37.19 2.71
723 754 8.505625 CAAAAGAATTAATTTGGTGGGATGTTG 58.494 33.333 1.43 0.00 33.84 3.33
724 755 6.933514 AGAATTAATTTGGTGGGATGTTGT 57.066 33.333 1.43 0.00 0.00 3.32
725 756 7.315066 AGAATTAATTTGGTGGGATGTTGTT 57.685 32.000 1.43 0.00 0.00 2.83
726 757 7.386059 AGAATTAATTTGGTGGGATGTTGTTC 58.614 34.615 1.43 0.00 0.00 3.18
727 758 5.476091 TTAATTTGGTGGGATGTTGTTCC 57.524 39.130 0.00 0.00 34.83 3.62
728 759 1.323412 TTTGGTGGGATGTTGTTCCG 58.677 50.000 0.00 0.00 36.58 4.30
729 760 1.175983 TTGGTGGGATGTTGTTCCGC 61.176 55.000 0.00 0.00 36.58 5.54
730 761 2.340328 GGTGGGATGTTGTTCCGCC 61.340 63.158 0.00 0.00 42.98 6.13
731 762 1.303317 GTGGGATGTTGTTCCGCCT 60.303 57.895 0.00 0.00 36.58 5.52
732 763 0.035820 GTGGGATGTTGTTCCGCCTA 60.036 55.000 0.00 0.00 36.58 3.93
733 764 0.693622 TGGGATGTTGTTCCGCCTAA 59.306 50.000 0.00 0.00 36.58 2.69
734 765 1.283613 TGGGATGTTGTTCCGCCTAAT 59.716 47.619 0.00 0.00 36.58 1.73
735 766 2.291282 TGGGATGTTGTTCCGCCTAATT 60.291 45.455 0.00 0.00 36.58 1.40
736 767 2.758423 GGGATGTTGTTCCGCCTAATTT 59.242 45.455 0.00 0.00 36.58 1.82
737 768 3.194755 GGGATGTTGTTCCGCCTAATTTT 59.805 43.478 0.00 0.00 36.58 1.82
738 769 4.421058 GGATGTTGTTCCGCCTAATTTTC 58.579 43.478 0.00 0.00 0.00 2.29
739 770 4.157840 GGATGTTGTTCCGCCTAATTTTCT 59.842 41.667 0.00 0.00 0.00 2.52
740 771 5.355910 GGATGTTGTTCCGCCTAATTTTCTA 59.644 40.000 0.00 0.00 0.00 2.10
741 772 6.127842 GGATGTTGTTCCGCCTAATTTTCTAA 60.128 38.462 0.00 0.00 0.00 2.10
742 773 6.827586 TGTTGTTCCGCCTAATTTTCTAAT 57.172 33.333 0.00 0.00 0.00 1.73
743 774 7.925043 TGTTGTTCCGCCTAATTTTCTAATA 57.075 32.000 0.00 0.00 0.00 0.98
744 775 7.754625 TGTTGTTCCGCCTAATTTTCTAATAC 58.245 34.615 0.00 0.00 0.00 1.89
745 776 6.930667 TGTTCCGCCTAATTTTCTAATACC 57.069 37.500 0.00 0.00 0.00 2.73
746 777 6.655930 TGTTCCGCCTAATTTTCTAATACCT 58.344 36.000 0.00 0.00 0.00 3.08
747 778 6.764560 TGTTCCGCCTAATTTTCTAATACCTC 59.235 38.462 0.00 0.00 0.00 3.85
748 779 6.488769 TCCGCCTAATTTTCTAATACCTCA 57.511 37.500 0.00 0.00 0.00 3.86
749 780 7.074653 TCCGCCTAATTTTCTAATACCTCAT 57.925 36.000 0.00 0.00 0.00 2.90
750 781 6.934645 TCCGCCTAATTTTCTAATACCTCATG 59.065 38.462 0.00 0.00 0.00 3.07
751 782 6.710744 CCGCCTAATTTTCTAATACCTCATGT 59.289 38.462 0.00 0.00 0.00 3.21
752 783 7.876068 CCGCCTAATTTTCTAATACCTCATGTA 59.124 37.037 0.00 0.00 0.00 2.29
753 784 8.709646 CGCCTAATTTTCTAATACCTCATGTAC 58.290 37.037 0.00 0.00 30.62 2.90
754 785 9.780186 GCCTAATTTTCTAATACCTCATGTACT 57.220 33.333 0.00 0.00 30.62 2.73
762 793 9.987272 TTCTAATACCTCATGTACTGAATGATG 57.013 33.333 0.00 0.00 33.69 3.07
763 794 9.147732 TCTAATACCTCATGTACTGAATGATGT 57.852 33.333 7.44 7.44 36.96 3.06
766 797 9.547753 AATACCTCATGTACTGAATGATGTAAC 57.452 33.333 11.28 0.00 38.10 2.50
767 798 6.946340 ACCTCATGTACTGAATGATGTAACA 58.054 36.000 0.00 0.00 33.02 2.41
768 799 6.818644 ACCTCATGTACTGAATGATGTAACAC 59.181 38.462 0.00 0.00 33.02 3.32
769 800 7.044181 CCTCATGTACTGAATGATGTAACACT 58.956 38.462 0.00 0.00 33.69 3.55
770 801 7.223582 CCTCATGTACTGAATGATGTAACACTC 59.776 40.741 0.00 0.00 33.69 3.51
771 802 7.840931 TCATGTACTGAATGATGTAACACTCT 58.159 34.615 0.00 0.00 0.00 3.24
772 803 7.976175 TCATGTACTGAATGATGTAACACTCTC 59.024 37.037 0.00 0.00 0.00 3.20
773 804 7.227049 TGTACTGAATGATGTAACACTCTCA 57.773 36.000 0.00 0.00 0.00 3.27
774 805 7.666623 TGTACTGAATGATGTAACACTCTCAA 58.333 34.615 0.00 0.00 0.00 3.02
775 806 8.147704 TGTACTGAATGATGTAACACTCTCAAA 58.852 33.333 0.00 0.00 0.00 2.69
776 807 9.155975 GTACTGAATGATGTAACACTCTCAAAT 57.844 33.333 0.00 0.00 0.00 2.32
777 808 8.627208 ACTGAATGATGTAACACTCTCAAATT 57.373 30.769 0.00 0.00 0.00 1.82
778 809 9.071276 ACTGAATGATGTAACACTCTCAAATTT 57.929 29.630 0.00 0.00 0.00 1.82
779 810 9.338291 CTGAATGATGTAACACTCTCAAATTTG 57.662 33.333 12.15 12.15 0.00 2.32
780 811 7.809331 TGAATGATGTAACACTCTCAAATTTGC 59.191 33.333 13.54 0.00 0.00 3.68
781 812 6.631971 TGATGTAACACTCTCAAATTTGCA 57.368 33.333 13.54 2.82 0.00 4.08
782 813 7.036996 TGATGTAACACTCTCAAATTTGCAA 57.963 32.000 13.54 0.00 0.00 4.08
783 814 7.660112 TGATGTAACACTCTCAAATTTGCAAT 58.340 30.769 13.54 0.00 0.00 3.56
784 815 8.791675 TGATGTAACACTCTCAAATTTGCAATA 58.208 29.630 13.54 0.00 0.00 1.90
785 816 9.624697 GATGTAACACTCTCAAATTTGCAATAA 57.375 29.630 13.54 0.00 0.00 1.40
786 817 9.979578 ATGTAACACTCTCAAATTTGCAATAAA 57.020 25.926 13.54 0.00 0.00 1.40
787 818 9.462174 TGTAACACTCTCAAATTTGCAATAAAG 57.538 29.630 13.54 4.77 0.00 1.85
788 819 9.463443 GTAACACTCTCAAATTTGCAATAAAGT 57.537 29.630 13.54 7.10 0.00 2.66
789 820 7.935338 ACACTCTCAAATTTGCAATAAAGTG 57.065 32.000 13.54 18.04 37.13 3.16
790 821 6.925165 ACACTCTCAAATTTGCAATAAAGTGG 59.075 34.615 22.90 12.78 35.80 4.00
791 822 5.928264 ACTCTCAAATTTGCAATAAAGTGGC 59.072 36.000 13.54 0.00 0.00 5.01
792 823 5.851720 TCTCAAATTTGCAATAAAGTGGCA 58.148 33.333 13.54 0.00 35.41 4.92
793 824 6.286758 TCTCAAATTTGCAATAAAGTGGCAA 58.713 32.000 13.54 0.00 44.97 4.52
794 825 6.424509 TCTCAAATTTGCAATAAAGTGGCAAG 59.575 34.615 13.54 0.85 46.82 4.01
795 826 6.286758 TCAAATTTGCAATAAAGTGGCAAGA 58.713 32.000 13.54 0.00 46.82 3.02
796 827 6.424509 TCAAATTTGCAATAAAGTGGCAAGAG 59.575 34.615 13.54 0.00 46.82 2.85
797 828 3.940209 TTGCAATAAAGTGGCAAGAGG 57.060 42.857 0.00 0.00 42.12 3.69
798 829 1.545582 TGCAATAAAGTGGCAAGAGGC 59.454 47.619 0.00 0.00 43.74 4.70
799 830 1.821136 GCAATAAAGTGGCAAGAGGCT 59.179 47.619 0.00 0.00 44.01 4.58
800 831 2.232208 GCAATAAAGTGGCAAGAGGCTT 59.768 45.455 0.00 0.00 44.01 4.35
801 832 3.674410 GCAATAAAGTGGCAAGAGGCTTC 60.674 47.826 0.00 0.00 44.01 3.86
802 833 2.200373 TAAAGTGGCAAGAGGCTTCC 57.800 50.000 0.00 0.00 44.01 3.46
803 834 0.480252 AAAGTGGCAAGAGGCTTCCT 59.520 50.000 0.00 0.00 44.01 3.36
804 835 0.480252 AAGTGGCAAGAGGCTTCCTT 59.520 50.000 0.00 0.00 44.01 3.36
805 836 1.362224 AGTGGCAAGAGGCTTCCTTA 58.638 50.000 0.00 0.00 44.01 2.69
806 837 1.003696 AGTGGCAAGAGGCTTCCTTAC 59.996 52.381 0.00 0.00 44.01 2.34
807 838 1.064003 TGGCAAGAGGCTTCCTTACA 58.936 50.000 0.00 0.00 44.01 2.41
808 839 1.423541 TGGCAAGAGGCTTCCTTACAA 59.576 47.619 0.00 0.00 44.01 2.41
809 840 2.158534 TGGCAAGAGGCTTCCTTACAAA 60.159 45.455 0.00 0.00 44.01 2.83
810 841 2.890945 GGCAAGAGGCTTCCTTACAAAA 59.109 45.455 0.00 0.00 44.01 2.44
811 842 3.511540 GGCAAGAGGCTTCCTTACAAAAT 59.488 43.478 0.00 0.00 44.01 1.82
812 843 4.705023 GGCAAGAGGCTTCCTTACAAAATA 59.295 41.667 0.00 0.00 44.01 1.40
816 847 7.655732 GCAAGAGGCTTCCTTACAAAATAAAAA 59.344 33.333 0.00 0.00 40.25 1.94
836 867 3.635268 CTGACTTGCAGGCCCTCCC 62.635 68.421 0.00 0.00 41.07 4.30
919 953 3.351740 TCGCATATCCCAAAGCAGAAAA 58.648 40.909 0.00 0.00 0.00 2.29
932 966 3.843999 AGCAGAAAACGCAAAAGAAACA 58.156 36.364 0.00 0.00 0.00 2.83
933 967 3.859386 AGCAGAAAACGCAAAAGAAACAG 59.141 39.130 0.00 0.00 0.00 3.16
934 968 3.542097 GCAGAAAACGCAAAAGAAACAGC 60.542 43.478 0.00 0.00 0.00 4.40
935 969 3.611986 CAGAAAACGCAAAAGAAACAGCA 59.388 39.130 0.00 0.00 0.00 4.41
937 971 4.869861 AGAAAACGCAAAAGAAACAGCAAT 59.130 33.333 0.00 0.00 0.00 3.56
938 972 4.777140 AAACGCAAAAGAAACAGCAATC 57.223 36.364 0.00 0.00 0.00 2.67
940 974 2.100584 ACGCAAAAGAAACAGCAATCCA 59.899 40.909 0.00 0.00 0.00 3.41
941 975 3.122297 CGCAAAAGAAACAGCAATCCAA 58.878 40.909 0.00 0.00 0.00 3.53
942 976 3.182972 CGCAAAAGAAACAGCAATCCAAG 59.817 43.478 0.00 0.00 0.00 3.61
946 980 4.612264 AAGAAACAGCAATCCAAGCAAT 57.388 36.364 0.00 0.00 0.00 3.56
978 1012 2.037136 CGAAGCAGCCAAGGACCAG 61.037 63.158 0.00 0.00 0.00 4.00
999 1033 0.840722 GAAGGGGGAGGGAGTTGACA 60.841 60.000 0.00 0.00 0.00 3.58
1136 1170 1.449246 CGCCTTCTGCTCCAAGGAG 60.449 63.158 11.80 11.80 42.94 3.69
1172 1206 4.100498 TCCTAGTTTGTTGGTTCGAACTCT 59.900 41.667 26.32 14.88 40.92 3.24
1173 1207 5.302568 TCCTAGTTTGTTGGTTCGAACTCTA 59.697 40.000 26.32 11.65 40.92 2.43
1174 1208 5.987347 CCTAGTTTGTTGGTTCGAACTCTAA 59.013 40.000 26.32 16.34 40.92 2.10
1176 1210 4.814771 AGTTTGTTGGTTCGAACTCTAAGG 59.185 41.667 26.32 0.00 37.45 2.69
1210 1244 5.578157 AGGTTTGGTTGTTGGATAGTAGT 57.422 39.130 0.00 0.00 0.00 2.73
1211 1245 6.691255 AGGTTTGGTTGTTGGATAGTAGTA 57.309 37.500 0.00 0.00 0.00 1.82
1212 1246 6.708285 AGGTTTGGTTGTTGGATAGTAGTAG 58.292 40.000 0.00 0.00 0.00 2.57
1314 1348 0.111446 TCTTGCCGGATTGGGTTCAA 59.889 50.000 5.05 0.00 38.63 2.69
1332 1366 5.510179 GGTTCAAGGTTTATCGGATCGGATA 60.510 44.000 16.63 16.63 0.00 2.59
1368 1402 2.304180 CAGAGTTCACCAGGTTGGATCT 59.696 50.000 1.40 0.00 40.96 2.75
1370 1404 3.772025 AGAGTTCACCAGGTTGGATCTAG 59.228 47.826 1.40 0.00 40.96 2.43
1430 1464 2.472909 GCCCCTTCTTGAATCGCGG 61.473 63.158 6.13 0.00 0.00 6.46
1447 1481 0.867753 CGGCGCACTACTCAGACATC 60.868 60.000 10.83 0.00 0.00 3.06
1448 1482 0.867753 GGCGCACTACTCAGACATCG 60.868 60.000 10.83 0.00 0.00 3.84
1450 1484 0.867753 CGCACTACTCAGACATCGCC 60.868 60.000 0.00 0.00 0.00 5.54
1451 1485 0.867753 GCACTACTCAGACATCGCCG 60.868 60.000 0.00 0.00 0.00 6.46
1452 1486 0.452184 CACTACTCAGACATCGCCGT 59.548 55.000 0.00 0.00 0.00 5.68
1453 1487 1.669265 CACTACTCAGACATCGCCGTA 59.331 52.381 0.00 0.00 0.00 4.02
1529 2085 6.984474 TGTTTTCTGTACTACCTTGACTTCTG 59.016 38.462 0.00 0.00 0.00 3.02
1556 2112 5.278169 GCAATGGTTCCTATGATGACATCAC 60.278 44.000 20.21 6.60 43.01 3.06
1700 2256 3.057596 GCGGTTCAACCATCTCATTGAAA 60.058 43.478 7.52 0.00 44.24 2.69
1733 2289 6.986817 AGTAGCAATTATATGTGTCTGACCAC 59.013 38.462 5.17 4.59 35.86 4.16
1796 2352 6.248433 TGACTAATTCCATCTTTGGCTCTTT 58.752 36.000 0.00 0.00 43.29 2.52
2014 2570 5.245531 TCTCCTTGTGTACTTTATGCTTGG 58.754 41.667 0.00 0.00 0.00 3.61
2064 2620 9.725019 TCAAGTATACATGTTCAAGATTTCTGT 57.275 29.630 2.30 0.00 0.00 3.41
2226 2782 8.668353 TGCAATATCTTGTTCTGTTTAGATCAC 58.332 33.333 0.00 0.00 33.53 3.06
2233 2789 4.211164 TGTTCTGTTTAGATCACGCACTTG 59.789 41.667 0.00 0.00 31.81 3.16
2325 2881 1.281899 GCGGTACATCAGCTTCAGAC 58.718 55.000 0.00 0.00 34.56 3.51
2416 2972 4.655963 ACATCAGACATGTTGGTAAGCTT 58.344 39.130 3.48 3.48 31.55 3.74
2433 2989 1.068748 GCTTCAATGGTGTCTGCTGTG 60.069 52.381 0.00 0.00 0.00 3.66
2573 3129 2.812609 CGAGCAGCACGAGCACAT 60.813 61.111 6.34 0.00 45.49 3.21
2641 3197 4.879545 GCCGGTTCTGAAGGTATTTTATCA 59.120 41.667 1.90 0.00 0.00 2.15
2664 3220 6.429078 TCATACTTGAGTAGTGACTACGTGTT 59.571 38.462 16.30 0.00 41.37 3.32
2719 3275 9.606631 AGATTCATTTCTCTGTTGGATACTTAC 57.393 33.333 0.00 0.00 37.61 2.34
2732 3288 5.978814 TGGATACTTACCTTCTGAGCTTTC 58.021 41.667 0.00 0.00 37.61 2.62
2781 3337 2.831685 TCGTATGTGTCCTTGCAACT 57.168 45.000 0.00 0.00 0.00 3.16
2818 3374 9.988815 AAGTATGAATACTCACTGAATCATACC 57.011 33.333 16.05 3.84 45.31 2.73
2819 3375 8.300286 AGTATGAATACTCACTGAATCATACCG 58.700 37.037 16.05 0.00 45.31 4.02
2858 3414 8.084985 TCCTATGTGATTGTGTTATCTGGTAA 57.915 34.615 0.00 0.00 0.00 2.85
3002 3558 9.565213 GATAAGAAATGCATTATAATGGTCAGC 57.435 33.333 23.57 11.61 36.90 4.26
3006 3562 4.811555 TGCATTATAATGGTCAGCGTTC 57.188 40.909 23.57 7.15 36.90 3.95
3147 3706 3.725740 GCAGTGTTTGATTTCGTGAACTG 59.274 43.478 0.00 0.00 37.45 3.16
3329 4254 3.384467 CCTTTTCAGGTTGTTGATGGTGT 59.616 43.478 0.00 0.00 35.06 4.16
3331 4256 2.727123 TCAGGTTGTTGATGGTGTGT 57.273 45.000 0.00 0.00 0.00 3.72
3355 4280 6.703165 GTGGAAGCTTGTTTTCTTTTGATCAT 59.297 34.615 2.10 0.00 0.00 2.45
3382 4307 2.808543 GCAGTTTGGTCACCTAACTCAG 59.191 50.000 19.55 11.51 43.77 3.35
3435 4360 3.431922 TTAGTCACTGCTATACACGCC 57.568 47.619 0.00 0.00 0.00 5.68
3447 4372 4.216687 GCTATACACGCCTATTCAGAGAGT 59.783 45.833 0.00 0.00 0.00 3.24
3485 4413 2.030185 TGTCTTCTAGAAGTGTGTCGCC 60.030 50.000 27.59 10.30 39.38 5.54
3498 4426 2.101082 TGTGTCGCCTGTTACTGTACAA 59.899 45.455 0.00 0.00 0.00 2.41
3550 4481 8.573885 GGTAGGTATTTTGCTTACACTTCTTTT 58.426 33.333 0.00 0.00 0.00 2.27
3563 4494 6.044512 ACACTTCTTTTGTACAAAGCTACG 57.955 37.500 19.72 11.30 0.00 3.51
3647 4578 3.864583 TGTTCTTGTTGCATTGAAAGTGC 59.135 39.130 0.00 0.00 42.81 4.40
3743 4695 4.217497 GCATTATCTTGAAGCGATCTTGC 58.783 43.478 0.00 0.00 31.48 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 116 5.736951 ATCTATTGTACAGATGGGCTCTC 57.263 43.478 0.00 0.00 31.49 3.20
289 297 9.825972 TTCTCTATTTACGAAAAATTCAAGCTG 57.174 29.630 5.96 0.00 0.00 4.24
340 348 3.309296 TGCCCTCAAACATTTAAACCCA 58.691 40.909 0.00 0.00 0.00 4.51
404 412 5.724370 TCAAAGTGTGGTAGATAATCCCTGA 59.276 40.000 0.00 0.00 0.00 3.86
470 478 0.808755 GCGATGGTTCAATCCCGTTT 59.191 50.000 0.00 0.00 0.00 3.60
578 609 9.791801 TGGAAAGCATCATATAAAATAGCAGTA 57.208 29.630 0.00 0.00 0.00 2.74
579 610 8.696043 TGGAAAGCATCATATAAAATAGCAGT 57.304 30.769 0.00 0.00 0.00 4.40
580 611 9.403110 GTTGGAAAGCATCATATAAAATAGCAG 57.597 33.333 0.00 0.00 0.00 4.24
581 612 9.135189 AGTTGGAAAGCATCATATAAAATAGCA 57.865 29.630 0.00 0.00 0.00 3.49
582 613 9.971922 AAGTTGGAAAGCATCATATAAAATAGC 57.028 29.630 0.00 0.00 0.00 2.97
587 618 9.237187 TGTACAAGTTGGAAAGCATCATATAAA 57.763 29.630 7.96 0.00 0.00 1.40
588 619 8.800370 TGTACAAGTTGGAAAGCATCATATAA 57.200 30.769 7.96 0.00 0.00 0.98
589 620 8.978874 ATGTACAAGTTGGAAAGCATCATATA 57.021 30.769 7.96 0.00 0.00 0.86
590 621 7.886629 ATGTACAAGTTGGAAAGCATCATAT 57.113 32.000 7.96 0.00 0.00 1.78
591 622 8.800370 TTATGTACAAGTTGGAAAGCATCATA 57.200 30.769 7.96 0.00 0.00 2.15
592 623 7.611467 TCTTATGTACAAGTTGGAAAGCATCAT 59.389 33.333 7.96 0.00 0.00 2.45
593 624 6.939730 TCTTATGTACAAGTTGGAAAGCATCA 59.060 34.615 7.96 0.00 0.00 3.07
594 625 7.377766 TCTTATGTACAAGTTGGAAAGCATC 57.622 36.000 7.96 0.00 0.00 3.91
595 626 7.394359 ACATCTTATGTACAAGTTGGAAAGCAT 59.606 33.333 7.96 1.46 42.78 3.79
596 627 6.714810 ACATCTTATGTACAAGTTGGAAAGCA 59.285 34.615 7.96 0.00 42.78 3.91
597 628 7.094805 TGACATCTTATGTACAAGTTGGAAAGC 60.095 37.037 7.96 0.00 45.03 3.51
598 629 8.322906 TGACATCTTATGTACAAGTTGGAAAG 57.677 34.615 7.96 0.00 45.03 2.62
599 630 8.862325 ATGACATCTTATGTACAAGTTGGAAA 57.138 30.769 7.96 0.00 45.03 3.13
600 631 7.277760 CGATGACATCTTATGTACAAGTTGGAA 59.722 37.037 13.45 0.00 45.03 3.53
601 632 6.756542 CGATGACATCTTATGTACAAGTTGGA 59.243 38.462 13.45 0.00 45.03 3.53
602 633 6.756542 TCGATGACATCTTATGTACAAGTTGG 59.243 38.462 13.45 0.00 45.03 3.77
603 634 7.755582 TCGATGACATCTTATGTACAAGTTG 57.244 36.000 13.45 0.00 45.03 3.16
604 635 8.948631 AATCGATGACATCTTATGTACAAGTT 57.051 30.769 13.45 0.00 45.03 2.66
605 636 8.197439 TGAATCGATGACATCTTATGTACAAGT 58.803 33.333 13.45 0.00 45.03 3.16
606 637 8.579682 TGAATCGATGACATCTTATGTACAAG 57.420 34.615 13.45 0.00 45.03 3.16
607 638 8.197439 ACTGAATCGATGACATCTTATGTACAA 58.803 33.333 13.45 0.00 45.03 2.41
608 639 7.716612 ACTGAATCGATGACATCTTATGTACA 58.283 34.615 13.45 0.00 45.03 2.90
609 640 8.581057 AACTGAATCGATGACATCTTATGTAC 57.419 34.615 13.45 0.00 45.03 2.90
610 641 7.867909 GGAACTGAATCGATGACATCTTATGTA 59.132 37.037 13.45 0.70 45.03 2.29
612 643 6.128982 CGGAACTGAATCGATGACATCTTATG 60.129 42.308 13.45 0.00 0.00 1.90
613 644 5.923114 CGGAACTGAATCGATGACATCTTAT 59.077 40.000 13.45 4.39 0.00 1.73
614 645 5.163550 ACGGAACTGAATCGATGACATCTTA 60.164 40.000 13.45 2.16 0.00 2.10
615 646 4.115516 CGGAACTGAATCGATGACATCTT 58.884 43.478 13.45 1.92 0.00 2.40
616 647 3.131223 ACGGAACTGAATCGATGACATCT 59.869 43.478 13.45 0.00 0.00 2.90
617 648 3.448686 ACGGAACTGAATCGATGACATC 58.551 45.455 5.28 5.28 0.00 3.06
618 649 3.119137 TGACGGAACTGAATCGATGACAT 60.119 43.478 0.00 0.00 0.00 3.06
619 650 2.230266 TGACGGAACTGAATCGATGACA 59.770 45.455 0.00 1.83 0.00 3.58
620 651 2.876091 TGACGGAACTGAATCGATGAC 58.124 47.619 0.00 0.00 0.00 3.06
621 652 3.801114 ATGACGGAACTGAATCGATGA 57.199 42.857 0.00 0.00 0.00 2.92
622 653 3.544834 GCAATGACGGAACTGAATCGATG 60.545 47.826 0.00 0.00 0.00 3.84
623 654 2.609459 GCAATGACGGAACTGAATCGAT 59.391 45.455 0.00 0.00 0.00 3.59
624 655 1.999735 GCAATGACGGAACTGAATCGA 59.000 47.619 0.00 0.00 0.00 3.59
625 656 1.062587 GGCAATGACGGAACTGAATCG 59.937 52.381 0.00 0.00 0.00 3.34
626 657 1.401905 GGGCAATGACGGAACTGAATC 59.598 52.381 0.00 0.00 0.00 2.52
627 658 1.004745 AGGGCAATGACGGAACTGAAT 59.995 47.619 0.00 0.00 0.00 2.57
628 659 0.400213 AGGGCAATGACGGAACTGAA 59.600 50.000 0.00 0.00 0.00 3.02
629 660 1.207089 CTAGGGCAATGACGGAACTGA 59.793 52.381 0.00 0.00 0.00 3.41
630 661 1.656652 CTAGGGCAATGACGGAACTG 58.343 55.000 0.00 0.00 0.00 3.16
631 662 0.541863 CCTAGGGCAATGACGGAACT 59.458 55.000 0.00 0.00 0.00 3.01
632 663 0.539986 TCCTAGGGCAATGACGGAAC 59.460 55.000 9.46 0.00 0.00 3.62
633 664 1.281419 TTCCTAGGGCAATGACGGAA 58.719 50.000 9.46 0.00 0.00 4.30
634 665 1.209504 CTTTCCTAGGGCAATGACGGA 59.790 52.381 9.46 0.00 0.00 4.69
635 666 1.065418 ACTTTCCTAGGGCAATGACGG 60.065 52.381 9.46 0.00 0.00 4.79
636 667 2.403252 ACTTTCCTAGGGCAATGACG 57.597 50.000 9.46 0.00 0.00 4.35
637 668 7.556635 ACTTATTTACTTTCCTAGGGCAATGAC 59.443 37.037 9.46 0.00 0.00 3.06
638 669 7.639378 ACTTATTTACTTTCCTAGGGCAATGA 58.361 34.615 9.46 0.00 0.00 2.57
639 670 7.881775 ACTTATTTACTTTCCTAGGGCAATG 57.118 36.000 9.46 1.84 0.00 2.82
640 671 7.342026 CCAACTTATTTACTTTCCTAGGGCAAT 59.658 37.037 9.46 1.68 0.00 3.56
641 672 6.661805 CCAACTTATTTACTTTCCTAGGGCAA 59.338 38.462 9.46 1.37 0.00 4.52
642 673 6.184789 CCAACTTATTTACTTTCCTAGGGCA 58.815 40.000 9.46 0.00 0.00 5.36
643 674 5.067413 GCCAACTTATTTACTTTCCTAGGGC 59.933 44.000 9.46 0.00 0.00 5.19
644 675 6.095021 GTGCCAACTTATTTACTTTCCTAGGG 59.905 42.308 9.46 0.00 0.00 3.53
645 676 6.657541 TGTGCCAACTTATTTACTTTCCTAGG 59.342 38.462 0.82 0.82 0.00 3.02
646 677 7.681939 TGTGCCAACTTATTTACTTTCCTAG 57.318 36.000 0.00 0.00 0.00 3.02
647 678 7.668052 ACATGTGCCAACTTATTTACTTTCCTA 59.332 33.333 0.00 0.00 0.00 2.94
648 679 6.493458 ACATGTGCCAACTTATTTACTTTCCT 59.507 34.615 0.00 0.00 0.00 3.36
649 680 6.687604 ACATGTGCCAACTTATTTACTTTCC 58.312 36.000 0.00 0.00 0.00 3.13
650 681 8.587952 AAACATGTGCCAACTTATTTACTTTC 57.412 30.769 0.00 0.00 0.00 2.62
651 682 8.956533 AAAACATGTGCCAACTTATTTACTTT 57.043 26.923 0.00 0.00 0.00 2.66
653 684 9.471084 GTTAAAACATGTGCCAACTTATTTACT 57.529 29.630 0.00 0.00 0.00 2.24
654 685 8.421701 CGTTAAAACATGTGCCAACTTATTTAC 58.578 33.333 0.00 0.00 0.00 2.01
655 686 8.350722 TCGTTAAAACATGTGCCAACTTATTTA 58.649 29.630 0.00 0.00 0.00 1.40
656 687 7.203910 TCGTTAAAACATGTGCCAACTTATTT 58.796 30.769 0.00 0.00 0.00 1.40
657 688 6.740110 TCGTTAAAACATGTGCCAACTTATT 58.260 32.000 0.00 0.00 0.00 1.40
658 689 6.016610 ACTCGTTAAAACATGTGCCAACTTAT 60.017 34.615 0.00 0.00 0.00 1.73
659 690 5.297278 ACTCGTTAAAACATGTGCCAACTTA 59.703 36.000 0.00 0.00 0.00 2.24
660 691 4.097286 ACTCGTTAAAACATGTGCCAACTT 59.903 37.500 0.00 0.00 0.00 2.66
661 692 3.630312 ACTCGTTAAAACATGTGCCAACT 59.370 39.130 0.00 0.00 0.00 3.16
662 693 3.959943 ACTCGTTAAAACATGTGCCAAC 58.040 40.909 0.00 2.92 0.00 3.77
663 694 3.628032 TGACTCGTTAAAACATGTGCCAA 59.372 39.130 0.00 0.00 0.00 4.52
664 695 3.206964 TGACTCGTTAAAACATGTGCCA 58.793 40.909 0.00 0.00 0.00 4.92
665 696 3.889196 TGACTCGTTAAAACATGTGCC 57.111 42.857 0.00 0.00 0.00 5.01
666 697 3.603770 GCATGACTCGTTAAAACATGTGC 59.396 43.478 0.00 0.00 39.95 4.57
667 698 5.034554 AGCATGACTCGTTAAAACATGTG 57.965 39.130 0.00 0.00 39.95 3.21
668 699 5.689383 AAGCATGACTCGTTAAAACATGT 57.311 34.783 0.00 0.00 39.95 3.21
669 700 7.463544 TCATAAGCATGACTCGTTAAAACATG 58.536 34.615 0.00 0.00 36.22 3.21
670 701 7.609760 TCATAAGCATGACTCGTTAAAACAT 57.390 32.000 0.00 0.00 36.22 2.71
691 722 8.096414 CCCACCAAATTAATTCTTTTGAGTCAT 58.904 33.333 0.10 0.00 35.34 3.06
692 723 7.288852 TCCCACCAAATTAATTCTTTTGAGTCA 59.711 33.333 0.10 0.00 35.34 3.41
693 724 7.666623 TCCCACCAAATTAATTCTTTTGAGTC 58.333 34.615 0.10 0.00 35.34 3.36
694 725 7.610580 TCCCACCAAATTAATTCTTTTGAGT 57.389 32.000 0.10 7.48 35.34 3.41
695 726 8.096414 ACATCCCACCAAATTAATTCTTTTGAG 58.904 33.333 0.10 7.04 35.34 3.02
696 727 7.972301 ACATCCCACCAAATTAATTCTTTTGA 58.028 30.769 0.10 0.00 35.34 2.69
697 728 8.505625 CAACATCCCACCAAATTAATTCTTTTG 58.494 33.333 0.10 0.00 33.58 2.44
698 729 8.217111 ACAACATCCCACCAAATTAATTCTTTT 58.783 29.630 0.10 0.00 0.00 2.27
699 730 7.744733 ACAACATCCCACCAAATTAATTCTTT 58.255 30.769 0.10 0.00 0.00 2.52
700 731 7.315066 ACAACATCCCACCAAATTAATTCTT 57.685 32.000 0.10 0.00 0.00 2.52
701 732 6.933514 ACAACATCCCACCAAATTAATTCT 57.066 33.333 0.10 0.00 0.00 2.40
702 733 6.593770 GGAACAACATCCCACCAAATTAATTC 59.406 38.462 0.10 0.00 33.05 2.17
703 734 6.472016 GGAACAACATCCCACCAAATTAATT 58.528 36.000 0.00 0.00 33.05 1.40
704 735 5.337169 CGGAACAACATCCCACCAAATTAAT 60.337 40.000 0.00 0.00 36.00 1.40
705 736 4.021894 CGGAACAACATCCCACCAAATTAA 60.022 41.667 0.00 0.00 36.00 1.40
706 737 3.508012 CGGAACAACATCCCACCAAATTA 59.492 43.478 0.00 0.00 36.00 1.40
707 738 2.298729 CGGAACAACATCCCACCAAATT 59.701 45.455 0.00 0.00 36.00 1.82
708 739 1.892474 CGGAACAACATCCCACCAAAT 59.108 47.619 0.00 0.00 36.00 2.32
709 740 1.323412 CGGAACAACATCCCACCAAA 58.677 50.000 0.00 0.00 36.00 3.28
710 741 1.175983 GCGGAACAACATCCCACCAA 61.176 55.000 0.00 0.00 36.00 3.67
711 742 1.602323 GCGGAACAACATCCCACCA 60.602 57.895 0.00 0.00 36.00 4.17
712 743 2.340328 GGCGGAACAACATCCCACC 61.340 63.158 0.00 0.00 36.00 4.61
713 744 0.035820 TAGGCGGAACAACATCCCAC 60.036 55.000 0.00 0.00 36.00 4.61
714 745 0.693622 TTAGGCGGAACAACATCCCA 59.306 50.000 0.00 0.00 36.00 4.37
715 746 2.052782 ATTAGGCGGAACAACATCCC 57.947 50.000 0.00 0.00 36.00 3.85
716 747 4.157840 AGAAAATTAGGCGGAACAACATCC 59.842 41.667 0.00 0.00 36.05 3.51
717 748 5.310720 AGAAAATTAGGCGGAACAACATC 57.689 39.130 0.00 0.00 0.00 3.06
718 749 6.827586 TTAGAAAATTAGGCGGAACAACAT 57.172 33.333 0.00 0.00 0.00 2.71
719 750 6.827586 ATTAGAAAATTAGGCGGAACAACA 57.172 33.333 0.00 0.00 0.00 3.33
720 751 7.066645 AGGTATTAGAAAATTAGGCGGAACAAC 59.933 37.037 0.00 0.00 0.00 3.32
721 752 7.114095 AGGTATTAGAAAATTAGGCGGAACAA 58.886 34.615 0.00 0.00 0.00 2.83
722 753 6.655930 AGGTATTAGAAAATTAGGCGGAACA 58.344 36.000 0.00 0.00 0.00 3.18
723 754 6.764560 TGAGGTATTAGAAAATTAGGCGGAAC 59.235 38.462 0.00 0.00 0.00 3.62
724 755 6.891388 TGAGGTATTAGAAAATTAGGCGGAA 58.109 36.000 0.00 0.00 0.00 4.30
725 756 6.488769 TGAGGTATTAGAAAATTAGGCGGA 57.511 37.500 0.00 0.00 0.00 5.54
726 757 6.710744 ACATGAGGTATTAGAAAATTAGGCGG 59.289 38.462 0.00 0.00 0.00 6.13
727 758 7.730364 ACATGAGGTATTAGAAAATTAGGCG 57.270 36.000 0.00 0.00 0.00 5.52
728 759 9.780186 AGTACATGAGGTATTAGAAAATTAGGC 57.220 33.333 0.00 0.00 33.76 3.93
736 767 9.987272 CATCATTCAGTACATGAGGTATTAGAA 57.013 33.333 0.00 0.00 39.68 2.10
737 768 9.147732 ACATCATTCAGTACATGAGGTATTAGA 57.852 33.333 9.45 0.00 42.38 2.10
740 771 9.547753 GTTACATCATTCAGTACATGAGGTATT 57.452 33.333 15.60 0.00 43.68 1.89
741 772 8.704668 TGTTACATCATTCAGTACATGAGGTAT 58.295 33.333 15.60 0.00 43.68 2.73
742 773 7.979537 GTGTTACATCATTCAGTACATGAGGTA 59.020 37.037 12.52 12.52 42.38 3.08
743 774 6.818644 GTGTTACATCATTCAGTACATGAGGT 59.181 38.462 14.08 14.08 45.25 3.85
744 775 7.044181 AGTGTTACATCATTCAGTACATGAGG 58.956 38.462 0.00 5.16 39.68 3.86
745 776 7.978414 AGAGTGTTACATCATTCAGTACATGAG 59.022 37.037 0.00 0.00 39.68 2.90
746 777 7.840931 AGAGTGTTACATCATTCAGTACATGA 58.159 34.615 0.00 0.00 35.12 3.07
747 778 7.761249 TGAGAGTGTTACATCATTCAGTACATG 59.239 37.037 0.00 0.00 0.00 3.21
748 779 7.840931 TGAGAGTGTTACATCATTCAGTACAT 58.159 34.615 0.00 0.00 0.00 2.29
749 780 7.227049 TGAGAGTGTTACATCATTCAGTACA 57.773 36.000 0.00 0.00 0.00 2.90
750 781 8.534333 TTTGAGAGTGTTACATCATTCAGTAC 57.466 34.615 0.00 0.00 0.00 2.73
751 782 9.725019 AATTTGAGAGTGTTACATCATTCAGTA 57.275 29.630 0.00 0.00 0.00 2.74
752 783 8.627208 AATTTGAGAGTGTTACATCATTCAGT 57.373 30.769 0.00 0.00 0.00 3.41
753 784 9.338291 CAAATTTGAGAGTGTTACATCATTCAG 57.662 33.333 13.08 0.00 0.00 3.02
754 785 7.809331 GCAAATTTGAGAGTGTTACATCATTCA 59.191 33.333 22.31 0.00 0.00 2.57
755 786 7.809331 TGCAAATTTGAGAGTGTTACATCATTC 59.191 33.333 22.31 0.00 0.00 2.67
756 787 7.660112 TGCAAATTTGAGAGTGTTACATCATT 58.340 30.769 22.31 0.00 0.00 2.57
757 788 7.218228 TGCAAATTTGAGAGTGTTACATCAT 57.782 32.000 22.31 0.00 0.00 2.45
758 789 6.631971 TGCAAATTTGAGAGTGTTACATCA 57.368 33.333 22.31 2.53 0.00 3.07
759 790 9.624697 TTATTGCAAATTTGAGAGTGTTACATC 57.375 29.630 22.31 0.00 0.00 3.06
760 791 9.979578 TTTATTGCAAATTTGAGAGTGTTACAT 57.020 25.926 22.31 0.00 0.00 2.29
761 792 9.462174 CTTTATTGCAAATTTGAGAGTGTTACA 57.538 29.630 22.31 3.96 0.00 2.41
762 793 9.463443 ACTTTATTGCAAATTTGAGAGTGTTAC 57.537 29.630 22.31 1.28 0.00 2.50
763 794 9.462174 CACTTTATTGCAAATTTGAGAGTGTTA 57.538 29.630 22.31 0.73 0.00 2.41
764 795 7.439056 CCACTTTATTGCAAATTTGAGAGTGTT 59.561 33.333 22.31 1.62 31.39 3.32
765 796 6.925165 CCACTTTATTGCAAATTTGAGAGTGT 59.075 34.615 22.31 7.86 31.39 3.55
766 797 6.128742 GCCACTTTATTGCAAATTTGAGAGTG 60.129 38.462 22.31 18.24 0.00 3.51
767 798 5.928264 GCCACTTTATTGCAAATTTGAGAGT 59.072 36.000 22.31 8.43 0.00 3.24
768 799 5.927689 TGCCACTTTATTGCAAATTTGAGAG 59.072 36.000 22.31 7.82 30.85 3.20
769 800 5.851720 TGCCACTTTATTGCAAATTTGAGA 58.148 33.333 22.31 9.19 30.85 3.27
770 801 6.424509 TCTTGCCACTTTATTGCAAATTTGAG 59.575 34.615 22.31 11.06 43.69 3.02
771 802 6.286758 TCTTGCCACTTTATTGCAAATTTGA 58.713 32.000 22.31 1.94 43.69 2.69
772 803 6.347888 CCTCTTGCCACTTTATTGCAAATTTG 60.348 38.462 14.03 14.03 43.69 2.32
773 804 5.702209 CCTCTTGCCACTTTATTGCAAATTT 59.298 36.000 1.71 0.00 43.69 1.82
774 805 5.240121 CCTCTTGCCACTTTATTGCAAATT 58.760 37.500 1.71 0.00 43.69 1.82
775 806 4.824289 CCTCTTGCCACTTTATTGCAAAT 58.176 39.130 1.71 0.00 43.69 2.32
776 807 3.554752 GCCTCTTGCCACTTTATTGCAAA 60.555 43.478 1.71 0.00 43.69 3.68
777 808 2.029110 GCCTCTTGCCACTTTATTGCAA 60.029 45.455 0.00 0.00 42.28 4.08
778 809 1.545582 GCCTCTTGCCACTTTATTGCA 59.454 47.619 0.00 0.00 0.00 4.08
779 810 1.821136 AGCCTCTTGCCACTTTATTGC 59.179 47.619 0.00 0.00 42.71 3.56
780 811 3.119352 GGAAGCCTCTTGCCACTTTATTG 60.119 47.826 0.00 0.00 42.71 1.90
781 812 3.092301 GGAAGCCTCTTGCCACTTTATT 58.908 45.455 0.00 0.00 42.71 1.40
782 813 2.310052 AGGAAGCCTCTTGCCACTTTAT 59.690 45.455 0.00 0.00 42.71 1.40
783 814 1.705186 AGGAAGCCTCTTGCCACTTTA 59.295 47.619 0.00 0.00 42.71 1.85
784 815 0.480252 AGGAAGCCTCTTGCCACTTT 59.520 50.000 0.00 0.00 42.71 2.66
785 816 0.480252 AAGGAAGCCTCTTGCCACTT 59.520 50.000 0.00 0.00 42.71 3.16
786 817 1.003696 GTAAGGAAGCCTCTTGCCACT 59.996 52.381 0.00 0.00 42.71 4.00
787 818 1.271379 TGTAAGGAAGCCTCTTGCCAC 60.271 52.381 0.00 0.00 42.71 5.01
788 819 1.064003 TGTAAGGAAGCCTCTTGCCA 58.936 50.000 0.00 0.00 42.71 4.92
789 820 2.200373 TTGTAAGGAAGCCTCTTGCC 57.800 50.000 0.00 0.00 42.71 4.52
790 821 4.790765 ATTTTGTAAGGAAGCCTCTTGC 57.209 40.909 0.00 0.00 41.71 4.01
791 822 9.196552 CTTTTTATTTTGTAAGGAAGCCTCTTG 57.803 33.333 0.00 0.00 30.89 3.02
792 823 7.872993 GCTTTTTATTTTGTAAGGAAGCCTCTT 59.127 33.333 0.00 0.00 33.91 2.85
793 824 7.233553 AGCTTTTTATTTTGTAAGGAAGCCTCT 59.766 33.333 0.00 0.00 39.11 3.69
794 825 7.329471 CAGCTTTTTATTTTGTAAGGAAGCCTC 59.671 37.037 0.00 0.00 39.11 4.70
795 826 7.015195 TCAGCTTTTTATTTTGTAAGGAAGCCT 59.985 33.333 0.00 0.00 39.11 4.58
796 827 7.116376 GTCAGCTTTTTATTTTGTAAGGAAGCC 59.884 37.037 0.00 0.00 39.11 4.35
797 828 7.867909 AGTCAGCTTTTTATTTTGTAAGGAAGC 59.132 33.333 0.00 0.00 38.72 3.86
798 829 9.750125 AAGTCAGCTTTTTATTTTGTAAGGAAG 57.250 29.630 0.00 0.00 0.00 3.46
799 830 9.528018 CAAGTCAGCTTTTTATTTTGTAAGGAA 57.472 29.630 0.00 0.00 31.49 3.36
800 831 7.651704 GCAAGTCAGCTTTTTATTTTGTAAGGA 59.348 33.333 0.00 0.00 31.49 3.36
801 832 7.437862 TGCAAGTCAGCTTTTTATTTTGTAAGG 59.562 33.333 0.00 0.00 31.49 2.69
802 833 8.351495 TGCAAGTCAGCTTTTTATTTTGTAAG 57.649 30.769 0.00 0.00 31.49 2.34
803 834 7.437862 CCTGCAAGTCAGCTTTTTATTTTGTAA 59.562 33.333 0.00 0.00 41.50 2.41
804 835 6.922957 CCTGCAAGTCAGCTTTTTATTTTGTA 59.077 34.615 0.00 0.00 41.50 2.41
805 836 5.754890 CCTGCAAGTCAGCTTTTTATTTTGT 59.245 36.000 0.00 0.00 41.50 2.83
806 837 5.333568 GCCTGCAAGTCAGCTTTTTATTTTG 60.334 40.000 0.00 0.00 41.50 2.44
807 838 4.751600 GCCTGCAAGTCAGCTTTTTATTTT 59.248 37.500 0.00 0.00 41.50 1.82
808 839 4.309933 GCCTGCAAGTCAGCTTTTTATTT 58.690 39.130 0.00 0.00 41.50 1.40
809 840 3.306294 GGCCTGCAAGTCAGCTTTTTATT 60.306 43.478 0.00 0.00 41.50 1.40
810 841 2.232208 GGCCTGCAAGTCAGCTTTTTAT 59.768 45.455 0.00 0.00 41.50 1.40
811 842 1.613437 GGCCTGCAAGTCAGCTTTTTA 59.387 47.619 0.00 0.00 41.50 1.52
812 843 0.390492 GGCCTGCAAGTCAGCTTTTT 59.610 50.000 0.00 0.00 41.50 1.94
816 847 3.255397 AGGGCCTGCAAGTCAGCT 61.255 61.111 4.50 0.00 41.50 4.24
836 867 3.543680 TTGGAGATTCTAGAAAGCCGG 57.456 47.619 9.71 0.00 0.00 6.13
919 953 2.100584 TGGATTGCTGTTTCTTTTGCGT 59.899 40.909 0.00 0.00 0.00 5.24
932 966 0.171903 GCGTGATTGCTTGGATTGCT 59.828 50.000 0.00 0.00 0.00 3.91
933 967 1.135699 CGCGTGATTGCTTGGATTGC 61.136 55.000 0.00 0.00 0.00 3.56
934 968 0.523968 CCGCGTGATTGCTTGGATTG 60.524 55.000 4.92 0.00 0.00 2.67
935 969 1.802636 CCGCGTGATTGCTTGGATT 59.197 52.632 4.92 0.00 0.00 3.01
937 971 3.430862 GCCGCGTGATTGCTTGGA 61.431 61.111 4.92 0.00 0.00 3.53
938 972 3.434319 AGCCGCGTGATTGCTTGG 61.434 61.111 4.92 0.00 29.17 3.61
940 974 3.434319 CCAGCCGCGTGATTGCTT 61.434 61.111 4.92 0.00 31.77 3.91
941 975 4.704833 ACCAGCCGCGTGATTGCT 62.705 61.111 4.92 2.54 35.25 3.91
942 976 4.465512 CACCAGCCGCGTGATTGC 62.466 66.667 4.92 0.00 32.77 3.56
978 1012 3.009714 AACTCCCTCCCCCTTCGC 61.010 66.667 0.00 0.00 0.00 4.70
999 1033 2.440796 CATCCGCACTGCCCCATT 60.441 61.111 0.00 0.00 0.00 3.16
1136 1170 5.189180 ACAAACTAGGATCAGGATTTGAGC 58.811 41.667 14.84 0.00 41.50 4.26
1172 1206 0.263765 ACCTACCTGATCGGCCCTTA 59.736 55.000 0.00 0.00 35.61 2.69
1173 1207 0.620700 AACCTACCTGATCGGCCCTT 60.621 55.000 0.00 0.00 35.61 3.95
1174 1208 0.620700 AAACCTACCTGATCGGCCCT 60.621 55.000 0.00 0.00 35.61 5.19
1176 1210 0.463833 CCAAACCTACCTGATCGGCC 60.464 60.000 0.00 0.00 35.61 6.13
1314 1348 3.775910 ACCTATCCGATCCGATAAACCT 58.224 45.455 5.46 0.00 0.00 3.50
1332 1366 0.605589 CTCTGGCAGTCTCGAAACCT 59.394 55.000 15.27 0.00 0.00 3.50
1368 1402 2.166459 CTGCTTCAGGGACGAACATCTA 59.834 50.000 0.00 0.00 0.00 1.98
1370 1404 1.338200 ACTGCTTCAGGGACGAACATC 60.338 52.381 0.00 0.00 35.51 3.06
1430 1464 1.475441 GCGATGTCTGAGTAGTGCGC 61.475 60.000 0.00 0.00 36.35 6.09
1447 1481 1.154112 GGCCATTGTTGTTACGGCG 60.154 57.895 4.80 4.80 43.93 6.46
1448 1482 0.170339 GAGGCCATTGTTGTTACGGC 59.830 55.000 5.01 0.00 42.21 5.68
1450 1484 2.095768 CAGTGAGGCCATTGTTGTTACG 60.096 50.000 5.01 0.00 0.00 3.18
1451 1485 2.228822 CCAGTGAGGCCATTGTTGTTAC 59.771 50.000 5.01 0.00 0.00 2.50
1452 1486 2.107378 TCCAGTGAGGCCATTGTTGTTA 59.893 45.455 5.01 0.00 37.29 2.41
1453 1487 1.133513 TCCAGTGAGGCCATTGTTGTT 60.134 47.619 5.01 0.00 37.29 2.83
1529 2085 4.883585 TGTCATCATAGGAACCATTGCTTC 59.116 41.667 0.00 0.00 31.99 3.86
1556 2112 6.765036 AGACAGATAAATTGCAGATACCACAG 59.235 38.462 0.00 0.00 0.00 3.66
1733 2289 1.884926 GAGCGGCTTGGAATCGGAG 60.885 63.158 2.97 0.00 0.00 4.63
1888 2444 9.973661 TCTGGGAAATACATCTTCTGAAATTAA 57.026 29.630 0.00 0.00 0.00 1.40
2014 2570 4.034510 CGACTGCATCCTGAACTTTATTCC 59.965 45.833 0.00 0.00 0.00 3.01
2226 2782 3.058983 TGTTGTTAAGAGATGCAAGTGCG 60.059 43.478 0.00 0.00 45.83 5.34
2233 2789 6.109359 ACTGGTAGATGTTGTTAAGAGATGC 58.891 40.000 0.00 0.00 0.00 3.91
2402 2958 4.022068 ACACCATTGAAGCTTACCAACATG 60.022 41.667 0.00 3.07 0.00 3.21
2416 2972 2.636647 TTCACAGCAGACACCATTGA 57.363 45.000 0.00 0.00 0.00 2.57
2573 3129 5.904984 TGGCCTCCTTCATAGCTTTAATA 57.095 39.130 3.32 0.00 0.00 0.98
2641 3197 6.814506 AACACGTAGTCACTACTCAAGTAT 57.185 37.500 13.21 0.00 41.61 2.12
2664 3220 8.558700 CAAGGTTAAACTTTAGGCTTAACGTAA 58.441 33.333 2.08 0.00 36.71 3.18
2671 3227 6.362248 TCTCACAAGGTTAAACTTTAGGCTT 58.638 36.000 2.08 0.00 0.00 4.35
2672 3228 5.937111 TCTCACAAGGTTAAACTTTAGGCT 58.063 37.500 2.08 0.00 0.00 4.58
2673 3229 6.819397 ATCTCACAAGGTTAAACTTTAGGC 57.181 37.500 2.08 0.00 0.00 3.93
2719 3275 4.245660 TGTACAATCGAAAGCTCAGAAGG 58.754 43.478 0.00 0.00 0.00 3.46
2732 3288 1.935873 CCATCTGCCACTGTACAATCG 59.064 52.381 0.00 0.00 0.00 3.34
2781 3337 7.274904 GTGAGTATTCATACTTACACGCTGAAA 59.725 37.037 14.13 0.00 44.55 2.69
2818 3374 3.134804 ACATAGGAAATGGAAGACCCTCG 59.865 47.826 0.00 0.00 35.38 4.63
2819 3375 4.164221 TCACATAGGAAATGGAAGACCCTC 59.836 45.833 0.00 0.00 35.38 4.30
2858 3414 7.227910 ACAGTACAGTTTTTCATCCGTTTACAT 59.772 33.333 0.00 0.00 0.00 2.29
3329 4254 5.398603 TCAAAAGAAAACAAGCTTCCACA 57.601 34.783 0.00 0.00 0.00 4.17
3331 4256 6.219417 TGATCAAAAGAAAACAAGCTTCCA 57.781 33.333 0.00 0.00 0.00 3.53
3355 4280 1.514678 GGTGACCAAACTGCATCGCA 61.515 55.000 0.00 0.00 36.92 5.10
3382 4307 7.524294 ACATTTCACTGACAAAAATCACAAC 57.476 32.000 0.00 0.00 0.00 3.32
3435 4360 7.445121 TGGGCAATACATAACTCTCTGAATAG 58.555 38.462 0.00 0.00 0.00 1.73
3447 4372 6.662755 AGAAGACAGATTGGGCAATACATAA 58.337 36.000 0.00 0.00 0.00 1.90
3485 4413 9.723447 CACTGTCTATAGATTGTACAGTAACAG 57.277 37.037 18.60 13.21 46.69 3.16
3512 4440 4.650972 AATACCTACCTTGCCAGACAAA 57.349 40.909 0.00 0.00 37.96 2.83
3563 4494 1.133976 AGTTGCAGGTATCATGCTCCC 60.134 52.381 7.80 0.00 44.17 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.