Multiple sequence alignment - TraesCS5A01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G093800 chr5A 100.000 3215 0 0 1 3215 130124579 130121365 0.000000e+00 5938.0
1 TraesCS5A01G093800 chr5B 93.912 1889 89 13 946 2824 132616162 132614290 0.000000e+00 2828.0
2 TraesCS5A01G093800 chr5B 93.878 392 20 3 2823 3213 132614207 132613819 3.570000e-164 588.0
3 TraesCS5A01G093800 chr5B 91.096 146 10 2 1990 2134 135522995 135522852 9.100000e-46 195.0
4 TraesCS5A01G093800 chr5B 95.918 49 2 0 849 897 674469921 674469969 2.660000e-11 80.5
5 TraesCS5A01G093800 chr5D 91.856 1891 81 27 936 2806 119762167 119760330 0.000000e+00 2571.0
6 TraesCS5A01G093800 chr2D 91.060 604 32 10 1 592 419053261 419053854 0.000000e+00 797.0
7 TraesCS5A01G093800 chr2D 86.774 310 13 10 603 897 419053897 419054193 1.440000e-83 320.0
8 TraesCS5A01G093800 chr2D 95.455 44 1 1 733 775 419054068 419054111 5.760000e-08 69.4
9 TraesCS5A01G093800 chr6D 91.206 398 29 5 1 394 240290383 240289988 1.310000e-148 536.0
10 TraesCS5A01G093800 chr6D 90.968 310 13 3 603 897 240289937 240289628 1.390000e-108 403.0
11 TraesCS5A01G093800 chr6D 95.455 44 1 1 733 775 240289753 240289710 5.760000e-08 69.4
12 TraesCS5A01G093800 chr2A 90.683 161 10 3 2102 2258 181737176 181737335 3.250000e-50 209.0
13 TraesCS5A01G093800 chr2A 86.726 113 8 5 788 897 742730393 742730285 5.630000e-23 119.0
14 TraesCS5A01G093800 chr3A 90.411 146 13 1 2102 2247 29706255 29706399 1.180000e-44 191.0
15 TraesCS5A01G093800 chr2B 84.756 164 18 6 619 776 43426430 43426592 1.190000e-34 158.0
16 TraesCS5A01G093800 chr2B 92.000 50 4 0 851 900 696297180 696297131 1.600000e-08 71.3
17 TraesCS5A01G093800 chr7D 88.235 119 7 5 786 900 220504938 220505053 5.590000e-28 135.0
18 TraesCS5A01G093800 chr1B 89.855 69 7 0 829 897 173118986 173118918 4.420000e-14 89.8
19 TraesCS5A01G093800 chr1B 86.957 69 9 0 829 897 11213938 11214006 9.560000e-11 78.7
20 TraesCS5A01G093800 chr7B 82.178 101 10 7 683 776 589462432 589462531 2.660000e-11 80.5
21 TraesCS5A01G093800 chr6B 92.157 51 4 0 851 901 283381594 283381644 4.450000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G093800 chr5A 130121365 130124579 3214 True 5938.000000 5938 100.000000 1 3215 1 chr5A.!!$R1 3214
1 TraesCS5A01G093800 chr5B 132613819 132616162 2343 True 1708.000000 2828 93.895000 946 3213 2 chr5B.!!$R2 2267
2 TraesCS5A01G093800 chr5D 119760330 119762167 1837 True 2571.000000 2571 91.856000 936 2806 1 chr5D.!!$R1 1870
3 TraesCS5A01G093800 chr2D 419053261 419054193 932 False 395.466667 797 91.096333 1 897 3 chr2D.!!$F1 896
4 TraesCS5A01G093800 chr6D 240289628 240290383 755 True 336.133333 536 92.543000 1 897 3 chr6D.!!$R1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 510 0.031449 GAGTGATCTGCGTCTAGGGC 59.969 60.0 0.00 0.0 0.0 5.19 F
921 994 0.106569 TCTCCCGGCCTGACGTTATA 60.107 55.0 0.00 0.0 0.0 0.98 F
956 1029 0.391263 AGAAACGAGACGGCCATTCC 60.391 55.0 2.24 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1896 0.324943 CATGAAGTCGAACCACCCCT 59.675 55.000 0.0 0.0 0.0 4.79 R
1985 2064 0.798776 GTTCATCAGTCCAACAGGCG 59.201 55.000 0.0 0.0 0.0 5.52 R
2911 3124 1.339727 ACCAACATAGTTTCCTCGGGC 60.340 52.381 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 62 2.360949 CTGCTCCTCGTCGGCATCAT 62.361 60.000 0.00 0.00 35.37 2.45
69 72 2.498167 GTCGGCATCATGATTTAGCCT 58.502 47.619 25.05 0.00 43.07 4.58
72 75 2.483106 CGGCATCATGATTTAGCCTCTG 59.517 50.000 25.05 12.01 43.07 3.35
73 76 3.748083 GGCATCATGATTTAGCCTCTGA 58.252 45.455 22.29 0.00 42.01 3.27
75 78 3.188873 GCATCATGATTTAGCCTCTGAGC 59.811 47.826 5.16 0.00 0.00 4.26
83 86 3.769739 TTAGCCTCTGAGCAAAACTGA 57.230 42.857 0.00 0.00 34.23 3.41
91 94 1.202915 TGAGCAAAACTGATCTGGCCA 60.203 47.619 4.71 4.71 0.00 5.36
97 100 0.038599 AACTGATCTGGCCATGCACA 59.961 50.000 5.51 3.80 0.00 4.57
101 104 1.752498 TGATCTGGCCATGCACATTTC 59.248 47.619 5.51 0.00 0.00 2.17
102 105 2.029623 GATCTGGCCATGCACATTTCT 58.970 47.619 5.51 0.00 0.00 2.52
108 111 2.641305 GCCATGCACATTTCTCTCTCT 58.359 47.619 0.00 0.00 0.00 3.10
201 204 0.036671 CCCTACACCTCCAAACGACC 60.037 60.000 0.00 0.00 0.00 4.79
273 277 2.264794 CGTGTACAGCCCCTCACC 59.735 66.667 0.00 0.00 0.00 4.02
293 297 1.355718 ATGATCCACCATCCCGCCTT 61.356 55.000 0.00 0.00 0.00 4.35
300 304 0.041090 ACCATCCCGCCTTTCCATTT 59.959 50.000 0.00 0.00 0.00 2.32
301 305 0.746659 CCATCCCGCCTTTCCATTTC 59.253 55.000 0.00 0.00 0.00 2.17
324 328 3.003173 TCCGGACAAGGCCCTCTG 61.003 66.667 0.00 0.00 0.00 3.35
327 331 1.073199 CGGACAAGGCCCTCTGTTT 59.927 57.895 0.00 0.00 0.00 2.83
373 378 1.002502 CAGGGGAAGGGAACGAACC 60.003 63.158 0.00 0.00 0.00 3.62
382 387 1.593209 GGAACGAACCTGTGACGCA 60.593 57.895 0.00 0.00 0.00 5.24
383 388 0.949105 GGAACGAACCTGTGACGCAT 60.949 55.000 0.00 0.00 0.00 4.73
407 420 1.341531 AGAAGAATAGTGGCGGATCGG 59.658 52.381 0.00 0.00 0.00 4.18
434 447 2.785921 CGAGAGGTGTCGAGGTCG 59.214 66.667 0.00 0.00 42.85 4.79
457 470 2.156051 GAGGTTCGTCTCCTTGCCGT 62.156 60.000 0.00 0.00 35.20 5.68
465 478 1.374758 CTCCTTGCCGTCAGGTCAC 60.375 63.158 0.00 0.00 40.50 3.67
494 507 0.309302 CGGGAGTGATCTGCGTCTAG 59.691 60.000 0.00 0.00 32.69 2.43
495 508 0.671251 GGGAGTGATCTGCGTCTAGG 59.329 60.000 0.00 0.00 32.69 3.02
496 509 0.671251 GGAGTGATCTGCGTCTAGGG 59.329 60.000 0.00 0.00 0.00 3.53
497 510 0.031449 GAGTGATCTGCGTCTAGGGC 59.969 60.000 0.00 0.00 0.00 5.19
498 511 1.299468 GTGATCTGCGTCTAGGGCG 60.299 63.158 0.00 3.77 0.00 6.13
499 512 1.453197 TGATCTGCGTCTAGGGCGA 60.453 57.895 10.89 7.45 0.00 5.54
500 513 1.284408 GATCTGCGTCTAGGGCGAG 59.716 63.158 10.89 6.04 0.00 5.03
501 514 1.448922 GATCTGCGTCTAGGGCGAGT 61.449 60.000 10.89 0.00 0.00 4.18
514 527 8.819974 CGTCTAGGGCGAGTAATTTTATTTTTA 58.180 33.333 2.20 0.00 0.00 1.52
587 600 3.061295 GGATGCGATATGATAACGTGCAG 59.939 47.826 4.12 0.00 33.99 4.41
592 605 4.444388 GCGATATGATAACGTGCAGAGAAA 59.556 41.667 4.12 0.00 0.00 2.52
594 607 6.346919 GCGATATGATAACGTGCAGAGAAATT 60.347 38.462 4.12 0.00 0.00 1.82
596 609 8.699749 CGATATGATAACGTGCAGAGAAATTAA 58.300 33.333 0.00 0.00 0.00 1.40
601 614 8.946085 TGATAACGTGCAGAGAAATTAAAATCT 58.054 29.630 0.00 0.00 0.00 2.40
605 650 6.204688 ACGTGCAGAGAAATTAAAATCTGTGA 59.795 34.615 17.12 4.99 38.78 3.58
616 661 0.698818 AATCTGTGAAGGGGGTGGAC 59.301 55.000 0.00 0.00 0.00 4.02
621 666 1.152204 TGAAGGGGGTGGACGAAGA 60.152 57.895 0.00 0.00 0.00 2.87
643 688 3.703001 AGGAGTTTGATGACCGTCATT 57.297 42.857 15.20 0.00 37.20 2.57
668 713 4.185394 TGAATTGATTGCCATGCATGAAC 58.815 39.130 28.31 18.95 38.76 3.18
709 754 2.488937 TGCGTCTCGTTACCTTATGTGA 59.511 45.455 0.00 0.00 0.00 3.58
710 755 3.057386 TGCGTCTCGTTACCTTATGTGAA 60.057 43.478 0.00 0.00 0.00 3.18
711 756 4.110482 GCGTCTCGTTACCTTATGTGAAT 58.890 43.478 0.00 0.00 0.00 2.57
712 757 4.565564 GCGTCTCGTTACCTTATGTGAATT 59.434 41.667 0.00 0.00 0.00 2.17
713 758 5.745294 GCGTCTCGTTACCTTATGTGAATTA 59.255 40.000 0.00 0.00 0.00 1.40
714 759 6.291479 GCGTCTCGTTACCTTATGTGAATTAC 60.291 42.308 0.00 0.00 0.00 1.89
715 760 6.075728 CGTCTCGTTACCTTATGTGAATTACG 60.076 42.308 0.00 0.00 0.00 3.18
716 761 6.749118 GTCTCGTTACCTTATGTGAATTACGT 59.251 38.462 0.00 0.00 0.00 3.57
717 762 7.274250 GTCTCGTTACCTTATGTGAATTACGTT 59.726 37.037 0.00 0.00 0.00 3.99
718 763 7.814107 TCTCGTTACCTTATGTGAATTACGTTT 59.186 33.333 0.00 0.00 0.00 3.60
719 764 8.978564 TCGTTACCTTATGTGAATTACGTTTA 57.021 30.769 0.00 0.00 0.00 2.01
720 765 8.859156 TCGTTACCTTATGTGAATTACGTTTAC 58.141 33.333 0.00 0.00 0.00 2.01
721 766 8.110002 CGTTACCTTATGTGAATTACGTTTACC 58.890 37.037 0.00 0.00 0.00 2.85
781 839 0.739813 CGCTACAGGGGAGAAAACCG 60.740 60.000 0.00 0.00 0.00 4.44
782 840 0.611714 GCTACAGGGGAGAAAACCGA 59.388 55.000 0.00 0.00 0.00 4.69
793 866 0.393944 GAAAACCGATGGAGGGGGAC 60.394 60.000 0.00 0.00 35.02 4.46
809 882 2.093658 GGGGACAGAAAATCGCTACAGA 60.094 50.000 0.00 0.00 0.00 3.41
818 891 0.178975 ATCGCTACAGAGAGAGGGGG 60.179 60.000 0.00 0.00 34.74 5.40
844 917 2.624838 AGTACGAGAGGTTGGACGAAAA 59.375 45.455 0.00 0.00 0.00 2.29
868 941 0.321034 AACGTAAGAGGGGAAACGGC 60.321 55.000 0.00 0.00 39.57 5.68
897 970 9.289782 ACTACGTTTCTTTTAGGTAGTAGAGAA 57.710 33.333 0.00 0.00 42.28 2.87
898 971 9.771915 CTACGTTTCTTTTAGGTAGTAGAGAAG 57.228 37.037 0.00 0.00 34.06 2.85
899 972 8.401490 ACGTTTCTTTTAGGTAGTAGAGAAGA 57.599 34.615 0.00 0.00 0.00 2.87
900 973 9.022884 ACGTTTCTTTTAGGTAGTAGAGAAGAT 57.977 33.333 0.00 0.00 0.00 2.40
901 974 9.857957 CGTTTCTTTTAGGTAGTAGAGAAGATT 57.142 33.333 0.00 0.00 0.00 2.40
912 985 3.013682 AGAAGATTTCTCCCGGCCT 57.986 52.632 0.00 0.00 34.07 5.19
913 986 0.543749 AGAAGATTTCTCCCGGCCTG 59.456 55.000 0.00 0.00 34.07 4.85
914 987 0.541863 GAAGATTTCTCCCGGCCTGA 59.458 55.000 0.00 0.00 0.00 3.86
915 988 0.253327 AAGATTTCTCCCGGCCTGAC 59.747 55.000 0.00 0.00 0.00 3.51
916 989 1.521681 GATTTCTCCCGGCCTGACG 60.522 63.158 0.00 0.00 0.00 4.35
917 990 2.240162 GATTTCTCCCGGCCTGACGT 62.240 60.000 0.00 0.00 0.00 4.34
918 991 1.838073 ATTTCTCCCGGCCTGACGTT 61.838 55.000 0.00 0.00 0.00 3.99
919 992 1.186917 TTTCTCCCGGCCTGACGTTA 61.187 55.000 0.00 0.00 0.00 3.18
920 993 0.974010 TTCTCCCGGCCTGACGTTAT 60.974 55.000 0.00 0.00 0.00 1.89
921 994 0.106569 TCTCCCGGCCTGACGTTATA 60.107 55.000 0.00 0.00 0.00 0.98
922 995 0.966920 CTCCCGGCCTGACGTTATAT 59.033 55.000 0.00 0.00 0.00 0.86
923 996 2.165167 CTCCCGGCCTGACGTTATATA 58.835 52.381 0.00 0.00 0.00 0.86
924 997 2.559668 CTCCCGGCCTGACGTTATATAA 59.440 50.000 0.00 0.00 0.00 0.98
925 998 2.297033 TCCCGGCCTGACGTTATATAAC 59.703 50.000 14.55 14.55 0.00 1.89
926 999 2.611224 CCCGGCCTGACGTTATATAACC 60.611 54.545 17.91 7.33 32.69 2.85
927 1000 2.611224 CCGGCCTGACGTTATATAACCC 60.611 54.545 17.91 11.66 32.69 4.11
928 1001 2.680577 GGCCTGACGTTATATAACCCG 58.319 52.381 17.91 11.05 32.69 5.28
929 1002 2.297033 GGCCTGACGTTATATAACCCGA 59.703 50.000 17.91 3.25 32.69 5.14
930 1003 3.311966 GCCTGACGTTATATAACCCGAC 58.688 50.000 17.91 9.66 32.69 4.79
931 1004 3.858503 GCCTGACGTTATATAACCCGACC 60.859 52.174 17.91 7.50 32.69 4.79
932 1005 3.305608 CCTGACGTTATATAACCCGACCC 60.306 52.174 17.91 5.60 32.69 4.46
933 1006 2.293122 TGACGTTATATAACCCGACCCG 59.707 50.000 17.91 8.52 32.69 5.28
934 1007 2.293399 GACGTTATATAACCCGACCCGT 59.707 50.000 17.91 11.33 32.69 5.28
956 1029 0.391263 AGAAACGAGACGGCCATTCC 60.391 55.000 2.24 0.00 0.00 3.01
1028 1101 3.486108 CGTATCATCGTGTAGTTTGGCTC 59.514 47.826 0.00 0.00 0.00 4.70
1098 1177 0.467384 ATCCAGGCGACAAGGATCTG 59.533 55.000 9.30 0.00 41.88 2.90
1182 1261 4.821589 CTCCTGCCCGCTTCGTCC 62.822 72.222 0.00 0.00 0.00 4.79
1288 1367 1.152567 AGCATCTCCTCCTCCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
1305 1384 4.176752 GCCTCCCACATCCCCGTC 62.177 72.222 0.00 0.00 0.00 4.79
1310 1389 3.151710 CCACATCCCCGTCCGCTA 61.152 66.667 0.00 0.00 0.00 4.26
1311 1390 2.507854 CCACATCCCCGTCCGCTAT 61.508 63.158 0.00 0.00 0.00 2.97
1725 1804 3.365291 TATCTGGGTCACCGTGCGC 62.365 63.158 0.00 0.00 40.75 6.09
1817 1896 1.067846 CGTCAATGTGAACGAGGAGGA 60.068 52.381 0.00 0.00 0.00 3.71
1818 1897 2.611518 GTCAATGTGAACGAGGAGGAG 58.388 52.381 0.00 0.00 0.00 3.69
1965 2044 1.303309 GGAGATTGGAGGCAACATCG 58.697 55.000 0.00 0.00 41.41 3.84
1968 2047 3.009723 GAGATTGGAGGCAACATCGAAA 58.990 45.455 0.00 0.00 41.41 3.46
1985 2064 2.660236 CGAAAGCAAATTCTTGAGCTGC 59.340 45.455 0.00 0.00 37.41 5.25
2007 2086 3.265791 GCCTGTTGGACTGATGAACTAG 58.734 50.000 0.00 0.00 34.57 2.57
2037 2116 7.761704 CAGTATTAGTGCAGTGTATTCTTGTCT 59.238 37.037 3.69 0.00 0.00 3.41
2135 2216 4.942852 TGCCTGTTTCCATGTAAAAGTTG 58.057 39.130 0.00 0.00 0.00 3.16
2191 2272 2.040947 TGCATGATCTGTGTAACCCCAA 59.959 45.455 0.00 0.00 34.36 4.12
2192 2273 2.684881 GCATGATCTGTGTAACCCCAAG 59.315 50.000 0.00 0.00 34.36 3.61
2227 2308 7.781324 AGATTTGTTTAGTTGTTCATCCCAT 57.219 32.000 0.00 0.00 0.00 4.00
2237 2318 1.065199 GTTCATCCCATGAGTCCAGCA 60.065 52.381 0.00 0.00 40.94 4.41
2301 2382 8.621532 TTATATTTGATCATTGCCTGACCTAC 57.378 34.615 0.00 0.00 36.48 3.18
2334 2424 4.763793 ACCTGATTAATATGGCATGCACTC 59.236 41.667 21.36 2.31 0.00 3.51
2345 2435 1.725641 CATGCACTCTCGGTTGCTAA 58.274 50.000 0.00 0.00 0.00 3.09
2346 2436 1.394917 CATGCACTCTCGGTTGCTAAC 59.605 52.381 0.00 0.00 0.00 2.34
2347 2437 0.679505 TGCACTCTCGGTTGCTAACT 59.320 50.000 0.00 0.00 0.00 2.24
2348 2438 1.070134 TGCACTCTCGGTTGCTAACTT 59.930 47.619 0.00 0.00 0.00 2.66
2349 2439 1.461127 GCACTCTCGGTTGCTAACTTG 59.539 52.381 0.00 0.00 0.00 3.16
2350 2440 1.461127 CACTCTCGGTTGCTAACTTGC 59.539 52.381 0.00 0.00 0.00 4.01
2351 2441 1.344763 ACTCTCGGTTGCTAACTTGCT 59.655 47.619 0.00 0.00 0.00 3.91
2352 2442 2.561419 ACTCTCGGTTGCTAACTTGCTA 59.439 45.455 0.00 0.00 0.00 3.49
2353 2443 3.195825 ACTCTCGGTTGCTAACTTGCTAT 59.804 43.478 0.00 0.00 0.00 2.97
2354 2444 4.401519 ACTCTCGGTTGCTAACTTGCTATA 59.598 41.667 0.00 0.00 0.00 1.31
2419 2517 9.237187 TGCATTCTACCTTTGTGTAATTTATCA 57.763 29.630 0.00 0.00 0.00 2.15
2544 2648 7.537715 TGTAATGCAAATACTGAACTGGATTG 58.462 34.615 12.56 0.00 32.85 2.67
2548 2652 4.218417 GCAAATACTGAACTGGATTGTGGT 59.782 41.667 0.00 0.00 0.00 4.16
2549 2653 5.702865 CAAATACTGAACTGGATTGTGGTG 58.297 41.667 0.00 0.00 0.00 4.17
2550 2654 4.640771 ATACTGAACTGGATTGTGGTGT 57.359 40.909 0.00 0.00 0.00 4.16
2551 2655 3.297134 ACTGAACTGGATTGTGGTGTT 57.703 42.857 0.00 0.00 0.00 3.32
2552 2656 2.951642 ACTGAACTGGATTGTGGTGTTG 59.048 45.455 0.00 0.00 0.00 3.33
2553 2657 2.294233 CTGAACTGGATTGTGGTGTTGG 59.706 50.000 0.00 0.00 0.00 3.77
2554 2658 1.000274 GAACTGGATTGTGGTGTTGGC 60.000 52.381 0.00 0.00 0.00 4.52
2555 2659 0.185901 ACTGGATTGTGGTGTTGGCT 59.814 50.000 0.00 0.00 0.00 4.75
2556 2660 1.331214 CTGGATTGTGGTGTTGGCTT 58.669 50.000 0.00 0.00 0.00 4.35
2557 2661 2.158534 ACTGGATTGTGGTGTTGGCTTA 60.159 45.455 0.00 0.00 0.00 3.09
2558 2662 2.228822 CTGGATTGTGGTGTTGGCTTAC 59.771 50.000 0.00 0.00 0.00 2.34
2559 2663 2.235016 GGATTGTGGTGTTGGCTTACA 58.765 47.619 0.00 0.00 0.00 2.41
2560 2664 2.825532 GGATTGTGGTGTTGGCTTACAT 59.174 45.455 0.00 0.00 0.00 2.29
2561 2665 3.119495 GGATTGTGGTGTTGGCTTACATC 60.119 47.826 0.00 0.00 0.00 3.06
2562 2666 2.949177 TGTGGTGTTGGCTTACATCT 57.051 45.000 5.44 0.00 30.36 2.90
2563 2667 2.503331 TGTGGTGTTGGCTTACATCTG 58.497 47.619 5.44 0.00 30.36 2.90
2564 2668 2.158682 TGTGGTGTTGGCTTACATCTGT 60.159 45.455 5.44 0.00 30.36 3.41
2565 2669 2.226437 GTGGTGTTGGCTTACATCTGTG 59.774 50.000 5.44 0.00 30.36 3.66
2566 2670 1.812571 GGTGTTGGCTTACATCTGTGG 59.187 52.381 0.00 0.00 0.00 4.17
2710 2837 1.772836 ACGGGGGCACTTACTAGTAG 58.227 55.000 2.23 0.00 31.96 2.57
2728 2855 4.897051 AGTAGGGGATGAATGGAACTACT 58.103 43.478 0.00 0.00 0.00 2.57
2770 2898 0.738389 CCTTTGGCTTTCGTGTGTGT 59.262 50.000 0.00 0.00 0.00 3.72
2771 2899 1.533756 CCTTTGGCTTTCGTGTGTGTG 60.534 52.381 0.00 0.00 0.00 3.82
2824 2952 4.133820 TGAATGTGTGTGTTTGGTCCTAG 58.866 43.478 0.00 0.00 0.00 3.02
2825 2953 4.141597 TGAATGTGTGTGTTTGGTCCTAGA 60.142 41.667 0.00 0.00 0.00 2.43
2826 2954 3.916359 TGTGTGTGTTTGGTCCTAGAA 57.084 42.857 0.00 0.00 0.00 2.10
2827 2955 3.804036 TGTGTGTGTTTGGTCCTAGAAG 58.196 45.455 0.00 0.00 0.00 2.85
2828 2956 3.139077 GTGTGTGTTTGGTCCTAGAAGG 58.861 50.000 0.00 0.00 36.46 3.46
2830 2958 3.968649 TGTGTGTTTGGTCCTAGAAGGTA 59.031 43.478 0.00 0.00 36.53 3.08
2870 3083 5.192927 TCAGATGCCACTTGGTAATTTAGG 58.807 41.667 0.00 0.00 37.57 2.69
2871 3084 5.045213 TCAGATGCCACTTGGTAATTTAGGA 60.045 40.000 0.00 0.00 37.57 2.94
2956 3169 1.842562 CCTTCCTCCATGACCATCACT 59.157 52.381 0.00 0.00 0.00 3.41
2967 3180 4.437682 TGACCATCACTTGAGGAAAACT 57.562 40.909 0.00 0.00 0.00 2.66
2972 3185 4.154918 CCATCACTTGAGGAAAACTAGTGC 59.845 45.833 0.00 0.00 39.53 4.40
2992 3205 5.124457 AGTGCTATTAGCTGACAAAATGTGG 59.876 40.000 16.29 0.00 42.97 4.17
2996 3209 4.829064 TTAGCTGACAAAATGTGGACAC 57.171 40.909 0.00 0.00 0.00 3.67
2998 3211 1.925946 GCTGACAAAATGTGGACACGC 60.926 52.381 0.00 0.00 0.00 5.34
3008 3221 1.669437 TGGACACGCGCAATGCTAA 60.669 52.632 5.73 0.00 43.27 3.09
3011 3224 0.165944 GACACGCGCAATGCTAAAGT 59.834 50.000 5.73 0.00 43.27 2.66
3065 3278 2.213499 GGCTACTCATAATGCGCAAGT 58.787 47.619 17.11 16.04 41.68 3.16
3099 3312 4.439305 TGCAAAAATCATGTGTAGGAGC 57.561 40.909 0.00 0.00 0.00 4.70
3108 3321 3.771479 TCATGTGTAGGAGCAACATCTCT 59.229 43.478 0.00 0.00 33.70 3.10
3131 3344 6.821160 TCTCTGTGTTTTGTAGAATGACAACA 59.179 34.615 0.00 0.00 39.02 3.33
3153 3366 5.163519 ACAACTTCAAGTAAAGCAGCACAAT 60.164 36.000 0.00 0.00 0.00 2.71
3164 3377 1.612726 GCAGCACAATCTCCCTGACTT 60.613 52.381 0.00 0.00 0.00 3.01
3205 3418 2.220593 GCATTGCTGTATCTTCGCTCTC 59.779 50.000 0.16 0.00 0.00 3.20
3213 3426 3.612860 TGTATCTTCGCTCTCGCTTTTTC 59.387 43.478 0.00 0.00 35.26 2.29
3214 3427 1.429463 TCTTCGCTCTCGCTTTTTCC 58.571 50.000 0.00 0.00 35.26 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 62 4.456911 CAGTTTTGCTCAGAGGCTAAATCA 59.543 41.667 0.00 0.00 38.61 2.57
69 72 2.430465 GCCAGATCAGTTTTGCTCAGA 58.570 47.619 0.00 0.00 0.00 3.27
72 75 1.538047 TGGCCAGATCAGTTTTGCTC 58.462 50.000 0.00 0.00 0.00 4.26
73 76 1.822990 CATGGCCAGATCAGTTTTGCT 59.177 47.619 13.05 0.00 0.00 3.91
75 78 1.546923 TGCATGGCCAGATCAGTTTTG 59.453 47.619 13.05 1.56 0.00 2.44
83 86 2.029623 GAGAAATGTGCATGGCCAGAT 58.970 47.619 13.05 0.00 0.00 2.90
91 94 2.172293 GGGGAGAGAGAGAAATGTGCAT 59.828 50.000 0.00 0.00 0.00 3.96
97 100 3.235200 CGTATGGGGGAGAGAGAGAAAT 58.765 50.000 0.00 0.00 0.00 2.17
101 104 1.133761 TCACGTATGGGGGAGAGAGAG 60.134 57.143 0.00 0.00 0.00 3.20
102 105 0.924090 TCACGTATGGGGGAGAGAGA 59.076 55.000 0.00 0.00 0.00 3.10
108 111 2.731571 GCTGCTCACGTATGGGGGA 61.732 63.158 0.00 0.00 0.00 4.81
160 163 0.937441 AGAGTAGAGAGGGATGGGCA 59.063 55.000 0.00 0.00 0.00 5.36
165 168 3.089421 AGGGAGAGAGTAGAGAGGGAT 57.911 52.381 0.00 0.00 0.00 3.85
201 204 0.182061 CTGGGGTGATCATGGTGAGG 59.818 60.000 0.00 0.00 0.00 3.86
273 277 1.601759 GGCGGGATGGTGGATCATG 60.602 63.158 0.00 0.00 31.91 3.07
373 378 6.143598 CACTATTCTTCTCATATGCGTCACAG 59.856 42.308 0.00 0.00 0.00 3.66
382 387 5.393569 CGATCCGCCACTATTCTTCTCATAT 60.394 44.000 0.00 0.00 0.00 1.78
383 388 4.082733 CGATCCGCCACTATTCTTCTCATA 60.083 45.833 0.00 0.00 0.00 2.15
457 470 1.591703 GTGCTCCATCGTGACCTGA 59.408 57.895 0.00 0.00 0.00 3.86
465 478 2.021068 ATCACTCCCGTGCTCCATCG 62.021 60.000 0.00 0.00 40.99 3.84
587 600 6.437477 ACCCCCTTCACAGATTTTAATTTCTC 59.563 38.462 0.00 0.00 0.00 2.87
592 605 4.045334 TCCACCCCCTTCACAGATTTTAAT 59.955 41.667 0.00 0.00 0.00 1.40
594 607 2.990284 TCCACCCCCTTCACAGATTTTA 59.010 45.455 0.00 0.00 0.00 1.52
596 609 1.075536 GTCCACCCCCTTCACAGATTT 59.924 52.381 0.00 0.00 0.00 2.17
597 610 0.698818 GTCCACCCCCTTCACAGATT 59.301 55.000 0.00 0.00 0.00 2.40
598 611 1.553690 CGTCCACCCCCTTCACAGAT 61.554 60.000 0.00 0.00 0.00 2.90
599 612 2.214216 CGTCCACCCCCTTCACAGA 61.214 63.158 0.00 0.00 0.00 3.41
601 614 1.764571 CTTCGTCCACCCCCTTCACA 61.765 60.000 0.00 0.00 0.00 3.58
605 650 0.400594 CTTTCTTCGTCCACCCCCTT 59.599 55.000 0.00 0.00 0.00 3.95
616 661 3.123621 CGGTCATCAAACTCCTTTCTTCG 59.876 47.826 0.00 0.00 0.00 3.79
621 666 3.485463 TGACGGTCATCAAACTCCTTT 57.515 42.857 6.76 0.00 0.00 3.11
643 688 6.163135 TCATGCATGGCAATCAATTCATTA 57.837 33.333 25.97 0.00 43.62 1.90
668 713 4.107622 GCAATCAATCCAAACGGAATCAG 58.892 43.478 0.00 0.00 35.74 2.90
709 754 6.546772 TCCCTCTGTTTTTGGTAAACGTAATT 59.453 34.615 0.00 0.00 33.05 1.40
710 755 6.016860 GTCCCTCTGTTTTTGGTAAACGTAAT 60.017 38.462 0.00 0.00 33.05 1.89
711 756 5.296531 GTCCCTCTGTTTTTGGTAAACGTAA 59.703 40.000 0.00 0.00 33.05 3.18
712 757 4.815846 GTCCCTCTGTTTTTGGTAAACGTA 59.184 41.667 0.00 0.00 33.05 3.57
713 758 3.628942 GTCCCTCTGTTTTTGGTAAACGT 59.371 43.478 0.00 0.00 33.05 3.99
714 759 3.628487 TGTCCCTCTGTTTTTGGTAAACG 59.372 43.478 0.00 0.00 33.05 3.60
715 760 5.585820 TTGTCCCTCTGTTTTTGGTAAAC 57.414 39.130 0.00 0.00 0.00 2.01
716 761 6.399743 GTTTTGTCCCTCTGTTTTTGGTAAA 58.600 36.000 0.00 0.00 0.00 2.01
717 762 5.105269 GGTTTTGTCCCTCTGTTTTTGGTAA 60.105 40.000 0.00 0.00 0.00 2.85
718 763 4.403113 GGTTTTGTCCCTCTGTTTTTGGTA 59.597 41.667 0.00 0.00 0.00 3.25
719 764 3.196901 GGTTTTGTCCCTCTGTTTTTGGT 59.803 43.478 0.00 0.00 0.00 3.67
720 765 3.736740 CGGTTTTGTCCCTCTGTTTTTGG 60.737 47.826 0.00 0.00 0.00 3.28
721 766 3.443976 CGGTTTTGTCCCTCTGTTTTTG 58.556 45.455 0.00 0.00 0.00 2.44
781 839 2.746472 CGATTTTCTGTCCCCCTCCATC 60.746 54.545 0.00 0.00 0.00 3.51
782 840 1.212935 CGATTTTCTGTCCCCCTCCAT 59.787 52.381 0.00 0.00 0.00 3.41
793 866 4.358851 CCTCTCTCTGTAGCGATTTTCTG 58.641 47.826 0.00 0.00 0.00 3.02
809 882 0.179936 CGTACTACGACCCCCTCTCT 59.820 60.000 2.17 0.00 46.05 3.10
818 891 2.095053 GTCCAACCTCTCGTACTACGAC 59.905 54.545 7.22 0.00 46.73 4.34
844 917 0.117742 TTCCCCTCTTACGTTCCCCT 59.882 55.000 0.00 0.00 0.00 4.79
868 941 8.292448 TCTACTACCTAAAAGAAACGTAGTGTG 58.708 37.037 8.12 2.68 45.00 3.82
897 970 1.908483 GTCAGGCCGGGAGAAATCT 59.092 57.895 2.18 0.00 0.00 2.40
898 971 1.521681 CGTCAGGCCGGGAGAAATC 60.522 63.158 2.18 0.00 0.00 2.17
899 972 1.838073 AACGTCAGGCCGGGAGAAAT 61.838 55.000 2.18 0.00 0.00 2.17
900 973 1.186917 TAACGTCAGGCCGGGAGAAA 61.187 55.000 2.18 0.00 0.00 2.52
901 974 0.974010 ATAACGTCAGGCCGGGAGAA 60.974 55.000 2.18 0.00 0.00 2.87
902 975 0.106569 TATAACGTCAGGCCGGGAGA 60.107 55.000 2.18 0.00 0.00 3.71
903 976 0.966920 ATATAACGTCAGGCCGGGAG 59.033 55.000 2.18 0.00 0.00 4.30
904 977 2.291209 TATATAACGTCAGGCCGGGA 57.709 50.000 2.18 0.00 0.00 5.14
905 978 2.611224 GGTTATATAACGTCAGGCCGGG 60.611 54.545 17.33 0.00 37.07 5.73
906 979 2.611224 GGGTTATATAACGTCAGGCCGG 60.611 54.545 17.33 0.00 37.07 6.13
907 980 2.680577 GGGTTATATAACGTCAGGCCG 58.319 52.381 17.33 0.00 37.07 6.13
908 981 2.297033 TCGGGTTATATAACGTCAGGCC 59.703 50.000 17.33 11.44 37.07 5.19
909 982 3.311966 GTCGGGTTATATAACGTCAGGC 58.688 50.000 17.33 7.92 37.07 4.85
910 983 3.305608 GGGTCGGGTTATATAACGTCAGG 60.306 52.174 17.33 6.60 37.07 3.86
911 984 3.610114 CGGGTCGGGTTATATAACGTCAG 60.610 52.174 17.33 9.68 37.07 3.51
912 985 2.293122 CGGGTCGGGTTATATAACGTCA 59.707 50.000 17.33 2.93 37.07 4.35
913 986 2.293399 ACGGGTCGGGTTATATAACGTC 59.707 50.000 17.33 11.84 37.07 4.34
914 987 2.306847 ACGGGTCGGGTTATATAACGT 58.693 47.619 17.33 8.86 37.07 3.99
915 988 3.252215 TGTACGGGTCGGGTTATATAACG 59.748 47.826 17.33 8.90 37.07 3.18
916 989 4.518970 TCTGTACGGGTCGGGTTATATAAC 59.481 45.833 15.98 15.98 35.50 1.89
917 990 4.724399 TCTGTACGGGTCGGGTTATATAA 58.276 43.478 0.85 0.00 0.00 0.98
918 991 4.365514 TCTGTACGGGTCGGGTTATATA 57.634 45.455 0.85 0.00 0.00 0.86
919 992 3.228188 TCTGTACGGGTCGGGTTATAT 57.772 47.619 0.85 0.00 0.00 0.86
920 993 2.727123 TCTGTACGGGTCGGGTTATA 57.273 50.000 0.85 0.00 0.00 0.98
921 994 1.851304 TTCTGTACGGGTCGGGTTAT 58.149 50.000 0.85 0.00 0.00 1.89
922 995 1.272212 GTTTCTGTACGGGTCGGGTTA 59.728 52.381 0.85 0.00 0.00 2.85
923 996 0.033920 GTTTCTGTACGGGTCGGGTT 59.966 55.000 0.85 0.00 0.00 4.11
924 997 1.667722 GTTTCTGTACGGGTCGGGT 59.332 57.895 0.85 0.00 0.00 5.28
925 998 1.444895 CGTTTCTGTACGGGTCGGG 60.445 63.158 0.85 0.00 37.86 5.14
926 999 0.455633 CTCGTTTCTGTACGGGTCGG 60.456 60.000 0.85 0.00 41.67 4.79
927 1000 0.518636 TCTCGTTTCTGTACGGGTCG 59.481 55.000 0.85 4.99 42.51 4.79
928 1001 1.727213 CGTCTCGTTTCTGTACGGGTC 60.727 57.143 0.85 0.00 42.51 4.46
929 1002 0.239347 CGTCTCGTTTCTGTACGGGT 59.761 55.000 0.85 0.00 42.51 5.28
930 1003 3.011513 CGTCTCGTTTCTGTACGGG 57.988 57.895 0.85 0.00 43.27 5.28
931 1004 3.011513 CCGTCTCGTTTCTGTACGG 57.988 57.895 0.00 0.00 46.04 4.02
932 1005 1.069378 GGCCGTCTCGTTTCTGTACG 61.069 60.000 0.00 0.00 42.68 3.67
933 1006 0.038892 TGGCCGTCTCGTTTCTGTAC 60.039 55.000 0.00 0.00 0.00 2.90
934 1007 0.892755 ATGGCCGTCTCGTTTCTGTA 59.107 50.000 0.00 0.00 0.00 2.74
1000 1073 3.813443 ACTACACGATGATACGTAGGGT 58.187 45.455 0.08 0.00 44.76 4.34
1288 1367 4.176752 GACGGGGATGTGGGAGGC 62.177 72.222 0.00 0.00 0.00 4.70
1310 1389 1.033574 GACGATCCCGGTGAAGAGAT 58.966 55.000 0.00 0.00 40.78 2.75
1311 1390 1.374343 CGACGATCCCGGTGAAGAGA 61.374 60.000 0.00 0.00 40.78 3.10
1400 1479 4.477975 CGACACCGGGAGCGTCTC 62.478 72.222 6.32 0.00 0.00 3.36
1402 1481 4.773117 GTCGACACCGGGAGCGTC 62.773 72.222 11.55 5.94 36.24 5.19
1725 1804 3.781770 GAGGATCTCTGGCGGTGCG 62.782 68.421 0.00 0.00 0.00 5.34
1728 1807 2.430610 GCTGAGGATCTCTGGCGGT 61.431 63.158 0.00 0.00 34.92 5.68
1817 1896 0.324943 CATGAAGTCGAACCACCCCT 59.675 55.000 0.00 0.00 0.00 4.79
1818 1897 1.305930 GCATGAAGTCGAACCACCCC 61.306 60.000 0.00 0.00 0.00 4.95
1965 2044 2.660236 CGCAGCTCAAGAATTTGCTTTC 59.340 45.455 0.00 0.00 33.82 2.62
1985 2064 0.798776 GTTCATCAGTCCAACAGGCG 59.201 55.000 0.00 0.00 0.00 5.52
2007 2086 9.751542 AAGAATACACTGCACTAATACTGATAC 57.248 33.333 0.00 0.00 0.00 2.24
2223 2304 2.022195 CAGAAATGCTGGACTCATGGG 58.978 52.381 0.00 0.00 41.07 4.00
2237 2318 9.533831 ACTAGTATTCATTTTTGTCCCAGAAAT 57.466 29.630 0.00 0.00 30.06 2.17
2250 2331 6.874134 ACTCAAACGAGCACTAGTATTCATTT 59.126 34.615 0.00 0.00 33.49 2.32
2301 2382 7.448161 TGCCATATTAATCAGGTACCAGAAATG 59.552 37.037 15.94 11.12 0.00 2.32
2334 2424 5.753438 TCAATATAGCAAGTTAGCAACCGAG 59.247 40.000 0.00 0.00 36.85 4.63
2352 2442 9.797556 CACACATCTTCATCACAAATTCAATAT 57.202 29.630 0.00 0.00 0.00 1.28
2353 2443 8.795513 ACACACATCTTCATCACAAATTCAATA 58.204 29.630 0.00 0.00 0.00 1.90
2354 2444 7.663827 ACACACATCTTCATCACAAATTCAAT 58.336 30.769 0.00 0.00 0.00 2.57
2419 2517 4.768448 TCATCTGGCAGAACAAATTCATGT 59.232 37.500 22.84 0.00 37.29 3.21
2520 2623 7.485913 CACAATCCAGTTCAGTATTTGCATTAC 59.514 37.037 0.00 0.00 0.00 1.89
2521 2624 7.362834 CCACAATCCAGTTCAGTATTTGCATTA 60.363 37.037 0.00 0.00 0.00 1.90
2544 2648 2.226437 CACAGATGTAAGCCAACACCAC 59.774 50.000 0.00 0.00 30.75 4.16
2548 2652 2.158682 ACACCACAGATGTAAGCCAACA 60.159 45.455 0.00 0.00 0.00 3.33
2549 2653 2.504367 ACACCACAGATGTAAGCCAAC 58.496 47.619 0.00 0.00 0.00 3.77
2550 2654 2.884012 CAACACCACAGATGTAAGCCAA 59.116 45.455 0.00 0.00 0.00 4.52
2551 2655 2.503331 CAACACCACAGATGTAAGCCA 58.497 47.619 0.00 0.00 0.00 4.75
2552 2656 1.812571 CCAACACCACAGATGTAAGCC 59.187 52.381 0.00 0.00 0.00 4.35
2553 2657 2.484264 GACCAACACCACAGATGTAAGC 59.516 50.000 0.00 0.00 0.00 3.09
2554 2658 4.008074 AGACCAACACCACAGATGTAAG 57.992 45.455 0.00 0.00 0.00 2.34
2555 2659 4.431416 AAGACCAACACCACAGATGTAA 57.569 40.909 0.00 0.00 0.00 2.41
2556 2660 4.133820 CAAAGACCAACACCACAGATGTA 58.866 43.478 0.00 0.00 0.00 2.29
2557 2661 2.951642 CAAAGACCAACACCACAGATGT 59.048 45.455 0.00 0.00 0.00 3.06
2558 2662 2.951642 ACAAAGACCAACACCACAGATG 59.048 45.455 0.00 0.00 0.00 2.90
2559 2663 3.297134 ACAAAGACCAACACCACAGAT 57.703 42.857 0.00 0.00 0.00 2.90
2560 2664 2.799126 ACAAAGACCAACACCACAGA 57.201 45.000 0.00 0.00 0.00 3.41
2561 2665 5.305585 AGTATACAAAGACCAACACCACAG 58.694 41.667 5.50 0.00 0.00 3.66
2562 2666 5.298989 AGTATACAAAGACCAACACCACA 57.701 39.130 5.50 0.00 0.00 4.17
2563 2667 7.227116 TGTTAAGTATACAAAGACCAACACCAC 59.773 37.037 5.50 0.00 0.00 4.16
2564 2668 7.281098 TGTTAAGTATACAAAGACCAACACCA 58.719 34.615 5.50 0.00 0.00 4.17
2565 2669 7.733402 TGTTAAGTATACAAAGACCAACACC 57.267 36.000 5.50 0.00 0.00 4.16
2566 2670 8.995220 TCATGTTAAGTATACAAAGACCAACAC 58.005 33.333 5.50 0.00 29.97 3.32
2643 2766 7.232534 GGCAACTTAATCCAAACATCCCATATA 59.767 37.037 0.00 0.00 0.00 0.86
2644 2767 6.041979 GGCAACTTAATCCAAACATCCCATAT 59.958 38.462 0.00 0.00 0.00 1.78
2710 2837 4.503714 TTCAGTAGTTCCATTCATCCCC 57.496 45.455 0.00 0.00 0.00 4.81
2770 2898 4.518970 GCTAATGTTTCTTCTGGTTCACCA 59.481 41.667 0.00 0.00 45.30 4.17
2771 2899 4.518970 TGCTAATGTTTCTTCTGGTTCACC 59.481 41.667 0.00 0.00 0.00 4.02
2830 2958 9.420118 TGGCATCTGAAATAACCTTACAATATT 57.580 29.630 0.00 0.00 0.00 1.28
2854 3067 7.461182 TCACAATTCCTAAATTACCAAGTGG 57.539 36.000 0.00 0.00 35.59 4.00
2911 3124 1.339727 ACCAACATAGTTTCCTCGGGC 60.340 52.381 0.00 0.00 0.00 6.13
2956 3169 6.818644 CAGCTAATAGCACTAGTTTTCCTCAA 59.181 38.462 15.28 0.00 45.56 3.02
2967 3180 6.316140 CCACATTTTGTCAGCTAATAGCACTA 59.684 38.462 15.28 0.00 45.56 2.74
2972 3185 6.546395 GTGTCCACATTTTGTCAGCTAATAG 58.454 40.000 0.00 0.00 0.00 1.73
2998 3211 5.779806 ACTAACTACACTTTAGCATTGCG 57.220 39.130 2.38 0.00 30.78 4.85
3011 3224 9.212641 GTGGATACTCGACATATACTAACTACA 57.787 37.037 0.00 0.00 37.61 2.74
3034 3247 2.665649 TGAGTAGCCAATACACGTGG 57.334 50.000 21.57 2.00 36.79 4.94
3065 3278 5.785243 TGATTTTTGCATTGCTTCTCATGA 58.215 33.333 10.49 0.00 0.00 3.07
3099 3312 7.482654 TTCTACAAAACACAGAGAGATGTTG 57.517 36.000 0.00 0.00 39.00 3.33
3108 3321 6.993786 TGTTGTCATTCTACAAAACACAGA 57.006 33.333 0.00 0.00 40.85 3.41
3131 3344 4.981806 TTGTGCTGCTTTACTTGAAGTT 57.018 36.364 1.97 0.00 0.00 2.66
3153 3366 3.511934 GCTCTTACAGAAAGTCAGGGAGA 59.488 47.826 0.00 0.00 36.51 3.71
3164 3377 3.888323 TGCACCATTTTGCTCTTACAGAA 59.112 39.130 0.00 0.00 43.41 3.02
3182 3395 1.667724 AGCGAAGATACAGCAATGCAC 59.332 47.619 8.35 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.