Multiple sequence alignment - TraesCS5A01G085400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G085400 chr5A 100.000 3439 0 0 1 3439 112108530 112105092 0.000000e+00 6351.0
1 TraesCS5A01G085400 chr5A 85.870 92 13 0 3326 3417 490261595 490261504 7.850000e-17 99.0
2 TraesCS5A01G085400 chr5A 79.528 127 24 2 3307 3432 583451589 583451714 4.730000e-14 89.8
3 TraesCS5A01G085400 chr5D 93.193 2086 122 8 1361 3439 108380527 108378455 0.000000e+00 3048.0
4 TraesCS5A01G085400 chr5D 90.944 1049 81 9 4 1045 198441525 198440484 0.000000e+00 1399.0
5 TraesCS5A01G085400 chr5D 91.954 174 10 4 1188 1360 514423753 514423923 1.230000e-59 241.0
6 TraesCS5A01G085400 chr2B 91.962 1045 72 7 4 1037 406539415 406538372 0.000000e+00 1454.0
7 TraesCS5A01G085400 chr2B 91.350 1052 78 6 4 1043 106924820 106923770 0.000000e+00 1426.0
8 TraesCS5A01G085400 chr2B 85.484 186 14 5 1187 1360 757293669 757293485 7.580000e-42 182.0
9 TraesCS5A01G085400 chr2B 92.424 66 5 0 1186 1251 68244401 68244336 1.020000e-15 95.3
10 TraesCS5A01G085400 chr1B 91.459 1042 76 9 1 1033 576027772 576028809 0.000000e+00 1419.0
11 TraesCS5A01G085400 chr5B 93.182 968 60 5 1655 2618 119128410 119127445 0.000000e+00 1417.0
12 TraesCS5A01G085400 chr5B 92.651 762 45 5 2679 3439 119127230 119126479 0.000000e+00 1086.0
13 TraesCS5A01G085400 chr5B 88.462 130 8 2 1491 1616 119128537 119128411 2.140000e-32 150.0
14 TraesCS5A01G085400 chr5B 89.815 108 10 1 1389 1495 119135567 119135460 1.660000e-28 137.0
15 TraesCS5A01G085400 chr5B 94.444 36 1 1 2381 2415 245966829 245966864 2.000000e-03 54.7
16 TraesCS5A01G085400 chr4D 91.275 1043 76 11 1 1033 487160523 487161560 0.000000e+00 1408.0
17 TraesCS5A01G085400 chr7B 91.233 1038 72 12 4 1033 178398651 178399677 0.000000e+00 1395.0
18 TraesCS5A01G085400 chr7B 86.275 51 5 2 2700 2749 125485619 125485570 2.000000e-03 54.7
19 TraesCS5A01G085400 chr2D 90.831 1047 77 14 1 1033 381560642 381561683 0.000000e+00 1384.0
20 TraesCS5A01G085400 chr2D 89.773 176 16 2 1187 1361 118892172 118892346 1.240000e-54 224.0
21 TraesCS5A01G085400 chrUn 90.769 1040 82 10 4 1033 22759059 22758024 0.000000e+00 1376.0
22 TraesCS5A01G085400 chrUn 86.310 168 22 1 1194 1360 263357895 263357728 7.580000e-42 182.0
23 TraesCS5A01G085400 chr3D 90.604 1043 83 11 1 1033 586301636 586300599 0.000000e+00 1369.0
24 TraesCS5A01G085400 chr3D 88.000 175 19 2 1187 1360 552559710 552559537 4.500000e-49 206.0
25 TraesCS5A01G085400 chr3D 92.857 42 3 0 2381 2422 56285097 56285138 1.030000e-05 62.1
26 TraesCS5A01G085400 chr3D 92.857 42 3 0 2381 2422 56299040 56299081 1.030000e-05 62.1
27 TraesCS5A01G085400 chr4A 90.857 175 11 5 1187 1360 67005735 67005905 2.670000e-56 230.0
28 TraesCS5A01G085400 chr4A 86.310 168 22 1 1194 1360 641837841 641837674 7.580000e-42 182.0
29 TraesCS5A01G085400 chr7A 88.701 177 13 4 1187 1357 722765972 722766147 3.480000e-50 209.0
30 TraesCS5A01G085400 chr7A 97.674 43 1 0 2381 2423 651209095 651209137 1.320000e-09 75.0
31 TraesCS5A01G085400 chr3A 90.580 138 11 2 1224 1360 703272013 703272149 7.580000e-42 182.0
32 TraesCS5A01G085400 chr6A 70.185 758 190 33 2692 3432 605854636 605855374 7.800000e-22 115.0
33 TraesCS5A01G085400 chr6A 85.870 92 13 0 3326 3417 48448311 48448220 7.850000e-17 99.0
34 TraesCS5A01G085400 chr6A 84.783 92 14 0 3326 3417 484995214 484995123 3.650000e-15 93.5
35 TraesCS5A01G085400 chr1D 73.476 328 78 8 2598 2920 225007356 225007033 7.800000e-22 115.0
36 TraesCS5A01G085400 chr1A 85.870 92 13 0 3326 3417 112727220 112727311 7.850000e-17 99.0
37 TraesCS5A01G085400 chr2A 81.579 114 19 2 3326 3438 578418329 578418217 3.650000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G085400 chr5A 112105092 112108530 3438 True 6351.000000 6351 100.000000 1 3439 1 chr5A.!!$R1 3438
1 TraesCS5A01G085400 chr5D 108378455 108380527 2072 True 3048.000000 3048 93.193000 1361 3439 1 chr5D.!!$R1 2078
2 TraesCS5A01G085400 chr5D 198440484 198441525 1041 True 1399.000000 1399 90.944000 4 1045 1 chr5D.!!$R2 1041
3 TraesCS5A01G085400 chr2B 406538372 406539415 1043 True 1454.000000 1454 91.962000 4 1037 1 chr2B.!!$R3 1033
4 TraesCS5A01G085400 chr2B 106923770 106924820 1050 True 1426.000000 1426 91.350000 4 1043 1 chr2B.!!$R2 1039
5 TraesCS5A01G085400 chr1B 576027772 576028809 1037 False 1419.000000 1419 91.459000 1 1033 1 chr1B.!!$F1 1032
6 TraesCS5A01G085400 chr5B 119126479 119128537 2058 True 884.333333 1417 91.431667 1491 3439 3 chr5B.!!$R2 1948
7 TraesCS5A01G085400 chr4D 487160523 487161560 1037 False 1408.000000 1408 91.275000 1 1033 1 chr4D.!!$F1 1032
8 TraesCS5A01G085400 chr7B 178398651 178399677 1026 False 1395.000000 1395 91.233000 4 1033 1 chr7B.!!$F1 1029
9 TraesCS5A01G085400 chr2D 381560642 381561683 1041 False 1384.000000 1384 90.831000 1 1033 1 chr2D.!!$F2 1032
10 TraesCS5A01G085400 chrUn 22758024 22759059 1035 True 1376.000000 1376 90.769000 4 1033 1 chrUn.!!$R1 1029
11 TraesCS5A01G085400 chr3D 586300599 586301636 1037 True 1369.000000 1369 90.604000 1 1033 1 chr3D.!!$R2 1032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 958 0.743097 GCAAATCTCAGCCATGTCCC 59.257 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2622 2674 0.562177 TTTGGCCCCCTCATATGCAT 59.438 50.0 3.79 3.79 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 9.911788 ATCTTTGGACATTCTATAAAGTGTGAT 57.088 29.630 0.00 0.00 31.95 3.06
241 250 6.103330 ACCTGAACAAAATTTTAAAGTGCGT 58.897 32.000 2.44 0.00 0.00 5.24
242 251 6.035542 ACCTGAACAAAATTTTAAAGTGCGTG 59.964 34.615 2.44 0.00 0.00 5.34
545 562 4.763793 AGAATATATGTGGCATGTCCTTGC 59.236 41.667 0.00 0.00 42.01 4.01
552 569 1.150827 GGCATGTCCTTGCAAAAAGC 58.849 50.000 0.00 0.00 44.59 3.51
594 611 6.791303 TGTTGAACCATGTAAAAGAGTGTTC 58.209 36.000 0.00 0.00 0.00 3.18
848 884 8.589701 AAGGAAGAAACTAAGAAAAACCAGAA 57.410 30.769 0.00 0.00 0.00 3.02
879 919 4.785950 CGAGCAACTGCGCTACTA 57.214 55.556 9.73 0.00 44.01 1.82
902 946 0.819582 CGGCCCAATTCAGCAAATCT 59.180 50.000 0.00 0.00 0.00 2.40
904 948 1.826720 GGCCCAATTCAGCAAATCTCA 59.173 47.619 0.00 0.00 0.00 3.27
907 951 2.159142 CCCAATTCAGCAAATCTCAGCC 60.159 50.000 0.00 0.00 0.00 4.85
912 956 2.362736 TCAGCAAATCTCAGCCATGTC 58.637 47.619 0.00 0.00 0.00 3.06
914 958 0.743097 GCAAATCTCAGCCATGTCCC 59.257 55.000 0.00 0.00 0.00 4.46
953 997 4.533311 AGACCGGGATTAAAGAGTTTGGTA 59.467 41.667 6.32 0.00 0.00 3.25
966 1010 5.809001 AGAGTTTGGTATGCTGATTTCAGA 58.191 37.500 11.70 0.00 46.59 3.27
982 1026 9.650539 CTGATTTCAGAGATTAAGAGTTTGAGA 57.349 33.333 1.15 0.00 46.59 3.27
1025 1069 9.942850 CCTATAAATTGAAGGTTTGTTTTGGAT 57.057 29.630 0.00 0.00 0.00 3.41
1052 1096 4.754322 TCCAAAAGAAAAACAAGGTCAGC 58.246 39.130 0.00 0.00 0.00 4.26
1053 1097 4.221703 TCCAAAAGAAAAACAAGGTCAGCA 59.778 37.500 0.00 0.00 0.00 4.41
1054 1098 4.329801 CCAAAAGAAAAACAAGGTCAGCAC 59.670 41.667 0.00 0.00 0.00 4.40
1055 1099 3.801114 AAGAAAAACAAGGTCAGCACC 57.199 42.857 0.00 0.00 44.19 5.01
1056 1100 2.031870 AGAAAAACAAGGTCAGCACCC 58.968 47.619 0.00 0.00 45.12 4.61
1057 1101 2.031870 GAAAAACAAGGTCAGCACCCT 58.968 47.619 0.00 0.00 45.12 4.34
1058 1102 1.692411 AAAACAAGGTCAGCACCCTC 58.308 50.000 0.00 0.00 45.12 4.30
1059 1103 0.178990 AAACAAGGTCAGCACCCTCC 60.179 55.000 0.00 0.00 45.12 4.30
1060 1104 2.046892 CAAGGTCAGCACCCTCCG 60.047 66.667 0.00 0.00 45.12 4.63
1061 1105 2.203788 AAGGTCAGCACCCTCCGA 60.204 61.111 0.00 0.00 45.12 4.55
1062 1106 2.584391 AAGGTCAGCACCCTCCGAC 61.584 63.158 0.00 0.00 45.12 4.79
1063 1107 3.311110 GGTCAGCACCCTCCGACA 61.311 66.667 0.00 0.00 36.54 4.35
1064 1108 2.262915 GTCAGCACCCTCCGACAG 59.737 66.667 0.00 0.00 0.00 3.51
1065 1109 2.997315 TCAGCACCCTCCGACAGG 60.997 66.667 0.00 0.00 43.01 4.00
1074 1118 2.044650 TCCGACAGGAGGTACCGG 60.045 66.667 6.18 0.00 42.75 5.28
1075 1119 3.145551 CCGACAGGAGGTACCGGG 61.146 72.222 6.32 0.00 44.74 5.73
1076 1120 3.834799 CGACAGGAGGTACCGGGC 61.835 72.222 6.32 0.00 44.74 6.13
1077 1121 2.682494 GACAGGAGGTACCGGGCA 60.682 66.667 6.32 0.00 41.57 5.36
1078 1122 3.001406 ACAGGAGGTACCGGGCAC 61.001 66.667 6.32 2.59 44.74 5.01
1079 1123 4.143333 CAGGAGGTACCGGGCACG 62.143 72.222 6.32 0.00 44.74 5.34
1080 1124 4.691359 AGGAGGTACCGGGCACGT 62.691 66.667 7.97 4.69 44.74 4.49
1081 1125 2.755469 GGAGGTACCGGGCACGTA 60.755 66.667 7.97 0.00 38.78 3.57
1082 1126 2.350458 GGAGGTACCGGGCACGTAA 61.350 63.158 7.97 0.00 38.78 3.18
1083 1127 1.679559 GGAGGTACCGGGCACGTAAT 61.680 60.000 7.97 0.00 38.78 1.89
1084 1128 0.249197 GAGGTACCGGGCACGTAATC 60.249 60.000 7.97 0.00 38.78 1.75
1085 1129 1.589727 GGTACCGGGCACGTAATCG 60.590 63.158 7.97 0.00 43.34 3.34
1086 1130 1.433064 GTACCGGGCACGTAATCGA 59.567 57.895 7.97 0.00 40.62 3.59
1087 1131 0.867329 GTACCGGGCACGTAATCGAC 60.867 60.000 7.97 0.00 40.62 4.20
1095 1139 2.608204 CGTAATCGACGTGCGCAG 59.392 61.111 12.22 7.95 46.86 5.18
1096 1140 2.150218 CGTAATCGACGTGCGCAGT 61.150 57.895 12.22 11.75 46.86 4.40
1097 1141 1.670971 CGTAATCGACGTGCGCAGTT 61.671 55.000 12.22 0.00 46.86 3.16
1098 1142 0.437295 GTAATCGACGTGCGCAGTTT 59.563 50.000 12.22 2.90 40.61 2.66
1099 1143 1.136446 GTAATCGACGTGCGCAGTTTT 60.136 47.619 12.22 9.14 40.61 2.43
1100 1144 0.384230 AATCGACGTGCGCAGTTTTG 60.384 50.000 12.22 1.43 40.61 2.44
1124 1168 1.523758 GGGAACGCAAAGATGACTGT 58.476 50.000 0.00 0.00 0.00 3.55
1125 1169 1.197721 GGGAACGCAAAGATGACTGTG 59.802 52.381 0.00 0.00 34.68 3.66
1126 1170 1.873591 GGAACGCAAAGATGACTGTGT 59.126 47.619 0.00 0.00 37.88 3.72
1127 1171 2.096218 GGAACGCAAAGATGACTGTGTC 60.096 50.000 0.00 0.00 35.29 3.67
1128 1172 2.533266 ACGCAAAGATGACTGTGTCT 57.467 45.000 0.00 0.00 34.11 3.41
1129 1173 2.838736 ACGCAAAGATGACTGTGTCTT 58.161 42.857 0.00 0.00 36.29 3.01
1130 1174 2.802816 ACGCAAAGATGACTGTGTCTTC 59.197 45.455 5.75 5.74 37.11 2.87
1131 1175 3.062763 CGCAAAGATGACTGTGTCTTCT 58.937 45.455 9.39 9.39 44.96 2.85
1132 1176 3.120752 CGCAAAGATGACTGTGTCTTCTG 60.121 47.826 14.10 7.34 43.19 3.02
1133 1177 3.812053 GCAAAGATGACTGTGTCTTCTGT 59.188 43.478 14.10 8.16 43.19 3.41
1134 1178 4.991056 GCAAAGATGACTGTGTCTTCTGTA 59.009 41.667 14.10 0.00 43.19 2.74
1135 1179 5.641209 GCAAAGATGACTGTGTCTTCTGTAT 59.359 40.000 14.10 4.78 43.19 2.29
1136 1180 6.148480 GCAAAGATGACTGTGTCTTCTGTATT 59.852 38.462 14.10 5.51 43.19 1.89
1137 1181 7.623089 GCAAAGATGACTGTGTCTTCTGTATTC 60.623 40.741 14.10 2.53 43.19 1.75
1138 1182 5.645624 AGATGACTGTGTCTTCTGTATTCG 58.354 41.667 13.04 0.00 42.66 3.34
1139 1183 4.174411 TGACTGTGTCTTCTGTATTCGG 57.826 45.455 0.00 0.00 33.15 4.30
1140 1184 3.572682 TGACTGTGTCTTCTGTATTCGGT 59.427 43.478 0.00 0.00 33.15 4.69
1141 1185 4.167268 GACTGTGTCTTCTGTATTCGGTC 58.833 47.826 0.00 0.00 0.00 4.79
1142 1186 3.172050 CTGTGTCTTCTGTATTCGGTCG 58.828 50.000 0.00 0.00 0.00 4.79
1143 1187 2.555325 TGTGTCTTCTGTATTCGGTCGT 59.445 45.455 0.00 0.00 0.00 4.34
1144 1188 2.915463 GTGTCTTCTGTATTCGGTCGTG 59.085 50.000 0.00 0.00 0.00 4.35
1145 1189 1.918609 GTCTTCTGTATTCGGTCGTGC 59.081 52.381 0.00 0.00 0.00 5.34
1146 1190 1.542472 TCTTCTGTATTCGGTCGTGCA 59.458 47.619 0.00 0.00 0.00 4.57
1147 1191 1.920574 CTTCTGTATTCGGTCGTGCAG 59.079 52.381 0.00 0.00 0.00 4.41
1148 1192 0.885879 TCTGTATTCGGTCGTGCAGT 59.114 50.000 0.00 0.00 0.00 4.40
1149 1193 1.135489 TCTGTATTCGGTCGTGCAGTC 60.135 52.381 0.00 0.00 0.00 3.51
1150 1194 0.599060 TGTATTCGGTCGTGCAGTCA 59.401 50.000 0.00 0.00 0.00 3.41
1151 1195 1.000052 TGTATTCGGTCGTGCAGTCAA 60.000 47.619 0.00 0.00 0.00 3.18
1152 1196 2.063266 GTATTCGGTCGTGCAGTCAAA 58.937 47.619 0.00 0.00 0.00 2.69
1153 1197 1.588674 ATTCGGTCGTGCAGTCAAAA 58.411 45.000 0.00 0.00 0.00 2.44
1154 1198 1.588674 TTCGGTCGTGCAGTCAAAAT 58.411 45.000 0.00 0.00 0.00 1.82
1155 1199 1.144969 TCGGTCGTGCAGTCAAAATC 58.855 50.000 0.00 0.00 0.00 2.17
1156 1200 0.165944 CGGTCGTGCAGTCAAAATCC 59.834 55.000 0.00 0.00 0.00 3.01
1157 1201 1.523758 GGTCGTGCAGTCAAAATCCT 58.476 50.000 0.00 0.00 0.00 3.24
1158 1202 1.197721 GGTCGTGCAGTCAAAATCCTG 59.802 52.381 0.00 0.00 0.00 3.86
1164 1208 3.122937 GCAGTCAAAATCCTGCGTTAG 57.877 47.619 0.00 0.00 43.99 2.34
1165 1209 2.742053 GCAGTCAAAATCCTGCGTTAGA 59.258 45.455 0.00 0.00 43.99 2.10
1166 1210 3.375299 GCAGTCAAAATCCTGCGTTAGAT 59.625 43.478 0.00 0.00 43.99 1.98
1167 1211 4.494855 GCAGTCAAAATCCTGCGTTAGATC 60.495 45.833 0.00 0.00 43.99 2.75
1168 1212 4.872691 CAGTCAAAATCCTGCGTTAGATCT 59.127 41.667 0.00 0.00 0.00 2.75
1169 1213 5.006165 CAGTCAAAATCCTGCGTTAGATCTC 59.994 44.000 0.00 0.00 0.00 2.75
1170 1214 4.271291 GTCAAAATCCTGCGTTAGATCTCC 59.729 45.833 0.00 0.00 0.00 3.71
1171 1215 4.162320 TCAAAATCCTGCGTTAGATCTCCT 59.838 41.667 0.00 0.00 0.00 3.69
1172 1216 3.742433 AATCCTGCGTTAGATCTCCTG 57.258 47.619 0.00 0.00 0.00 3.86
1173 1217 1.403814 TCCTGCGTTAGATCTCCTGG 58.596 55.000 0.00 0.63 0.00 4.45
1174 1218 1.063942 TCCTGCGTTAGATCTCCTGGA 60.064 52.381 0.00 0.00 0.00 3.86
1175 1219 1.067821 CCTGCGTTAGATCTCCTGGAC 59.932 57.143 0.00 0.00 0.00 4.02
1176 1220 1.751351 CTGCGTTAGATCTCCTGGACA 59.249 52.381 0.00 0.00 0.00 4.02
1177 1221 2.363680 CTGCGTTAGATCTCCTGGACAT 59.636 50.000 0.00 0.00 0.00 3.06
1178 1222 2.766263 TGCGTTAGATCTCCTGGACATT 59.234 45.455 0.00 0.00 0.00 2.71
1179 1223 3.958147 TGCGTTAGATCTCCTGGACATTA 59.042 43.478 0.00 0.00 0.00 1.90
1180 1224 4.202121 TGCGTTAGATCTCCTGGACATTAC 60.202 45.833 0.00 0.00 0.00 1.89
1181 1225 4.202121 GCGTTAGATCTCCTGGACATTACA 60.202 45.833 0.00 0.00 0.00 2.41
1182 1226 5.509840 GCGTTAGATCTCCTGGACATTACAT 60.510 44.000 0.00 0.00 0.00 2.29
1183 1227 5.923114 CGTTAGATCTCCTGGACATTACATG 59.077 44.000 0.00 0.00 0.00 3.21
1184 1228 6.239036 CGTTAGATCTCCTGGACATTACATGA 60.239 42.308 0.00 0.00 0.00 3.07
1185 1229 5.804944 AGATCTCCTGGACATTACATGAG 57.195 43.478 0.00 0.00 33.57 2.90
1186 1230 3.827008 TCTCCTGGACATTACATGAGC 57.173 47.619 0.00 0.00 32.71 4.26
1187 1231 3.106827 TCTCCTGGACATTACATGAGCA 58.893 45.455 0.00 0.00 32.71 4.26
1188 1232 3.519107 TCTCCTGGACATTACATGAGCAA 59.481 43.478 0.00 0.00 32.71 3.91
1189 1233 4.019411 TCTCCTGGACATTACATGAGCAAA 60.019 41.667 0.00 0.00 32.71 3.68
1190 1234 4.661222 TCCTGGACATTACATGAGCAAAA 58.339 39.130 0.00 0.00 0.00 2.44
1191 1235 5.076182 TCCTGGACATTACATGAGCAAAAA 58.924 37.500 0.00 0.00 0.00 1.94
1192 1236 5.716228 TCCTGGACATTACATGAGCAAAAAT 59.284 36.000 0.00 0.00 0.00 1.82
1193 1237 5.808540 CCTGGACATTACATGAGCAAAAATG 59.191 40.000 0.00 2.41 34.48 2.32
1194 1238 5.170021 TGGACATTACATGAGCAAAAATGC 58.830 37.500 0.00 0.00 32.10 3.56
1196 1240 6.152492 TGGACATTACATGAGCAAAAATGCTA 59.848 34.615 0.00 0.00 46.36 3.49
1197 1241 6.473455 GGACATTACATGAGCAAAAATGCTAC 59.527 38.462 0.00 0.00 46.36 3.58
1198 1242 6.923012 ACATTACATGAGCAAAAATGCTACA 58.077 32.000 0.00 4.66 46.36 2.74
1199 1243 6.808212 ACATTACATGAGCAAAAATGCTACAC 59.192 34.615 0.00 0.00 46.36 2.90
1200 1244 3.825308 ACATGAGCAAAAATGCTACACG 58.175 40.909 0.00 0.00 46.36 4.49
1201 1245 3.253188 ACATGAGCAAAAATGCTACACGT 59.747 39.130 0.00 0.58 46.36 4.49
1202 1246 4.454161 ACATGAGCAAAAATGCTACACGTA 59.546 37.500 0.00 0.00 46.36 3.57
1203 1247 4.398549 TGAGCAAAAATGCTACACGTAC 57.601 40.909 2.89 0.00 46.36 3.67
1204 1248 3.810386 TGAGCAAAAATGCTACACGTACA 59.190 39.130 2.89 0.00 46.36 2.90
1205 1249 4.084066 TGAGCAAAAATGCTACACGTACAG 60.084 41.667 2.89 0.00 46.36 2.74
1206 1250 4.062293 AGCAAAAATGCTACACGTACAGA 58.938 39.130 0.67 0.00 44.28 3.41
1207 1251 4.084013 AGCAAAAATGCTACACGTACAGAC 60.084 41.667 0.67 0.00 44.28 3.51
1208 1252 4.319190 GCAAAAATGCTACACGTACAGACA 60.319 41.667 0.00 0.00 0.00 3.41
1209 1253 4.985044 AAAATGCTACACGTACAGACAC 57.015 40.909 0.00 0.00 0.00 3.67
1210 1254 3.653539 AATGCTACACGTACAGACACA 57.346 42.857 0.00 0.00 0.00 3.72
1211 1255 3.868757 ATGCTACACGTACAGACACAT 57.131 42.857 0.00 0.00 0.00 3.21
1212 1256 3.653539 TGCTACACGTACAGACACATT 57.346 42.857 0.00 0.00 0.00 2.71
1213 1257 3.313690 TGCTACACGTACAGACACATTG 58.686 45.455 0.00 0.00 0.00 2.82
1214 1258 3.243602 TGCTACACGTACAGACACATTGT 60.244 43.478 0.00 0.00 0.00 2.71
1215 1259 4.023021 TGCTACACGTACAGACACATTGTA 60.023 41.667 0.00 0.00 0.00 2.41
1216 1260 4.322804 GCTACACGTACAGACACATTGTAC 59.677 45.833 5.66 5.66 44.61 2.90
1223 1267 6.613755 GTACAGACACATTGTACAGGTTTT 57.386 37.500 9.87 0.00 46.35 2.43
1224 1268 7.023197 GTACAGACACATTGTACAGGTTTTT 57.977 36.000 9.87 0.00 46.35 1.94
1225 1269 8.145316 GTACAGACACATTGTACAGGTTTTTA 57.855 34.615 9.87 0.00 46.35 1.52
1226 1270 7.023197 ACAGACACATTGTACAGGTTTTTAC 57.977 36.000 0.00 0.00 0.00 2.01
1227 1271 6.600032 ACAGACACATTGTACAGGTTTTTACA 59.400 34.615 0.00 0.00 0.00 2.41
1228 1272 7.132213 CAGACACATTGTACAGGTTTTTACAG 58.868 38.462 0.00 0.00 30.03 2.74
1229 1273 6.262273 AGACACATTGTACAGGTTTTTACAGG 59.738 38.462 0.00 0.00 30.03 4.00
1230 1274 5.889289 ACACATTGTACAGGTTTTTACAGGT 59.111 36.000 0.00 0.00 30.03 4.00
1231 1275 6.378848 ACACATTGTACAGGTTTTTACAGGTT 59.621 34.615 0.00 0.00 30.03 3.50
1232 1276 6.695278 CACATTGTACAGGTTTTTACAGGTTG 59.305 38.462 0.00 0.00 30.03 3.77
1233 1277 6.603997 ACATTGTACAGGTTTTTACAGGTTGA 59.396 34.615 0.00 0.00 30.03 3.18
1234 1278 6.687081 TTGTACAGGTTTTTACAGGTTGAG 57.313 37.500 0.00 0.00 30.03 3.02
1235 1279 5.127491 TGTACAGGTTTTTACAGGTTGAGG 58.873 41.667 0.00 0.00 0.00 3.86
1236 1280 4.513406 ACAGGTTTTTACAGGTTGAGGA 57.487 40.909 0.00 0.00 0.00 3.71
1237 1281 4.204799 ACAGGTTTTTACAGGTTGAGGAC 58.795 43.478 0.00 0.00 0.00 3.85
1238 1282 4.079958 ACAGGTTTTTACAGGTTGAGGACT 60.080 41.667 0.00 0.00 0.00 3.85
1239 1283 4.275936 CAGGTTTTTACAGGTTGAGGACTG 59.724 45.833 0.00 0.00 40.48 3.51
1240 1284 3.004419 GGTTTTTACAGGTTGAGGACTGC 59.996 47.826 0.00 0.00 38.25 4.40
1241 1285 2.163818 TTTACAGGTTGAGGACTGCG 57.836 50.000 0.00 0.00 38.25 5.18
1242 1286 0.320421 TTACAGGTTGAGGACTGCGC 60.320 55.000 0.00 0.00 38.25 6.09
1243 1287 2.486636 TACAGGTTGAGGACTGCGCG 62.487 60.000 0.00 0.00 38.25 6.86
1246 1290 3.482783 GTTGAGGACTGCGCGCTC 61.483 66.667 33.29 22.06 0.00 5.03
1247 1291 3.684990 TTGAGGACTGCGCGCTCT 61.685 61.111 33.29 22.49 0.00 4.09
1248 1292 3.226429 TTGAGGACTGCGCGCTCTT 62.226 57.895 33.29 18.98 0.00 2.85
1249 1293 2.883253 GAGGACTGCGCGCTCTTC 60.883 66.667 33.29 23.13 0.00 2.87
1250 1294 3.349481 GAGGACTGCGCGCTCTTCT 62.349 63.158 33.29 22.85 0.00 2.85
1251 1295 1.994507 GAGGACTGCGCGCTCTTCTA 61.995 60.000 33.29 9.83 0.00 2.10
1252 1296 1.153823 GGACTGCGCGCTCTTCTAA 60.154 57.895 33.29 8.98 0.00 2.10
1253 1297 0.528684 GGACTGCGCGCTCTTCTAAT 60.529 55.000 33.29 0.00 0.00 1.73
1254 1298 1.281899 GACTGCGCGCTCTTCTAATT 58.718 50.000 33.29 3.40 0.00 1.40
1255 1299 1.002366 ACTGCGCGCTCTTCTAATTG 58.998 50.000 33.29 10.90 0.00 2.32
1256 1300 1.280982 CTGCGCGCTCTTCTAATTGA 58.719 50.000 33.29 5.84 0.00 2.57
1257 1301 0.999406 TGCGCGCTCTTCTAATTGAC 59.001 50.000 33.29 0.00 0.00 3.18
1258 1302 0.301987 GCGCGCTCTTCTAATTGACC 59.698 55.000 26.67 0.00 0.00 4.02
1259 1303 0.931005 CGCGCTCTTCTAATTGACCC 59.069 55.000 5.56 0.00 0.00 4.46
1260 1304 1.471676 CGCGCTCTTCTAATTGACCCT 60.472 52.381 5.56 0.00 0.00 4.34
1261 1305 2.205911 GCGCTCTTCTAATTGACCCTC 58.794 52.381 0.00 0.00 0.00 4.30
1262 1306 2.464865 CGCTCTTCTAATTGACCCTCG 58.535 52.381 0.00 0.00 0.00 4.63
1263 1307 2.205911 GCTCTTCTAATTGACCCTCGC 58.794 52.381 0.00 0.00 0.00 5.03
1264 1308 2.159028 GCTCTTCTAATTGACCCTCGCT 60.159 50.000 0.00 0.00 0.00 4.93
1265 1309 3.680196 GCTCTTCTAATTGACCCTCGCTT 60.680 47.826 0.00 0.00 0.00 4.68
1266 1310 4.441634 GCTCTTCTAATTGACCCTCGCTTA 60.442 45.833 0.00 0.00 0.00 3.09
1267 1311 5.661458 CTCTTCTAATTGACCCTCGCTTAA 58.339 41.667 0.00 0.00 0.00 1.85
1268 1312 6.235231 TCTTCTAATTGACCCTCGCTTAAT 57.765 37.500 0.00 0.00 0.00 1.40
1269 1313 6.650120 TCTTCTAATTGACCCTCGCTTAATT 58.350 36.000 0.00 0.00 0.00 1.40
1270 1314 7.110155 TCTTCTAATTGACCCTCGCTTAATTT 58.890 34.615 0.00 0.00 0.00 1.82
1271 1315 7.610305 TCTTCTAATTGACCCTCGCTTAATTTT 59.390 33.333 0.00 0.00 0.00 1.82
1272 1316 7.316544 TCTAATTGACCCTCGCTTAATTTTC 57.683 36.000 0.00 0.00 0.00 2.29
1273 1317 5.975693 AATTGACCCTCGCTTAATTTTCA 57.024 34.783 0.00 0.00 0.00 2.69
1274 1318 6.530019 AATTGACCCTCGCTTAATTTTCAT 57.470 33.333 0.00 0.00 0.00 2.57
1275 1319 5.560966 TTGACCCTCGCTTAATTTTCATC 57.439 39.130 0.00 0.00 0.00 2.92
1276 1320 3.621268 TGACCCTCGCTTAATTTTCATCG 59.379 43.478 0.00 0.00 0.00 3.84
1277 1321 2.943033 ACCCTCGCTTAATTTTCATCGG 59.057 45.455 0.00 0.00 0.00 4.18
1278 1322 2.943033 CCCTCGCTTAATTTTCATCGGT 59.057 45.455 0.00 0.00 0.00 4.69
1279 1323 3.242739 CCCTCGCTTAATTTTCATCGGTG 60.243 47.826 0.00 0.00 0.00 4.94
1280 1324 3.621268 CCTCGCTTAATTTTCATCGGTGA 59.379 43.478 0.00 0.00 0.00 4.02
1281 1325 4.260375 CCTCGCTTAATTTTCATCGGTGAG 60.260 45.833 0.00 0.00 35.39 3.51
1282 1326 3.063452 TCGCTTAATTTTCATCGGTGAGC 59.937 43.478 0.00 0.00 35.39 4.26
1283 1327 3.695816 GCTTAATTTTCATCGGTGAGCC 58.304 45.455 0.00 0.00 35.39 4.70
1284 1328 3.489229 GCTTAATTTTCATCGGTGAGCCC 60.489 47.826 0.00 0.00 35.39 5.19
1293 1337 4.681978 GGTGAGCCCGTGCGTCTT 62.682 66.667 0.00 0.00 44.33 3.01
1294 1338 2.260434 GTGAGCCCGTGCGTCTTA 59.740 61.111 0.00 0.00 44.33 2.10
1295 1339 1.373748 GTGAGCCCGTGCGTCTTAA 60.374 57.895 0.00 0.00 44.33 1.85
1296 1340 0.739813 GTGAGCCCGTGCGTCTTAAT 60.740 55.000 0.00 0.00 44.33 1.40
1297 1341 0.459585 TGAGCCCGTGCGTCTTAATC 60.460 55.000 0.00 0.00 44.33 1.75
1298 1342 0.459585 GAGCCCGTGCGTCTTAATCA 60.460 55.000 0.00 0.00 44.33 2.57
1299 1343 0.036765 AGCCCGTGCGTCTTAATCAA 60.037 50.000 0.00 0.00 44.33 2.57
1300 1344 1.014352 GCCCGTGCGTCTTAATCAAT 58.986 50.000 0.00 0.00 0.00 2.57
1301 1345 1.003866 GCCCGTGCGTCTTAATCAATC 60.004 52.381 0.00 0.00 0.00 2.67
1302 1346 1.597663 CCCGTGCGTCTTAATCAATCC 59.402 52.381 0.00 0.00 0.00 3.01
1303 1347 2.276201 CCGTGCGTCTTAATCAATCCA 58.724 47.619 0.00 0.00 0.00 3.41
1304 1348 2.030457 CCGTGCGTCTTAATCAATCCAC 59.970 50.000 0.00 0.00 0.00 4.02
1305 1349 2.285026 CGTGCGTCTTAATCAATCCACG 60.285 50.000 0.00 0.00 38.76 4.94
1306 1350 2.030457 GTGCGTCTTAATCAATCCACGG 59.970 50.000 0.00 0.00 0.00 4.94
1307 1351 1.003866 GCGTCTTAATCAATCCACGGC 60.004 52.381 0.00 0.00 0.00 5.68
1308 1352 1.597663 CGTCTTAATCAATCCACGGCC 59.402 52.381 0.00 0.00 0.00 6.13
1309 1353 2.639065 GTCTTAATCAATCCACGGCCA 58.361 47.619 2.24 0.00 0.00 5.36
1310 1354 3.013921 GTCTTAATCAATCCACGGCCAA 58.986 45.455 2.24 0.00 0.00 4.52
1311 1355 3.632145 GTCTTAATCAATCCACGGCCAAT 59.368 43.478 2.24 0.00 0.00 3.16
1312 1356 3.882888 TCTTAATCAATCCACGGCCAATC 59.117 43.478 2.24 0.00 0.00 2.67
1313 1357 2.142356 AATCAATCCACGGCCAATCA 57.858 45.000 2.24 0.00 0.00 2.57
1314 1358 2.142356 ATCAATCCACGGCCAATCAA 57.858 45.000 2.24 0.00 0.00 2.57
1315 1359 2.142356 TCAATCCACGGCCAATCAAT 57.858 45.000 2.24 0.00 0.00 2.57
1316 1360 1.750206 TCAATCCACGGCCAATCAATG 59.250 47.619 2.24 0.00 0.00 2.82
1317 1361 1.477700 CAATCCACGGCCAATCAATGT 59.522 47.619 2.24 0.00 0.00 2.71
1318 1362 1.851304 ATCCACGGCCAATCAATGTT 58.149 45.000 2.24 0.00 0.00 2.71
1319 1363 2.498644 TCCACGGCCAATCAATGTTA 57.501 45.000 2.24 0.00 0.00 2.41
1320 1364 2.796557 TCCACGGCCAATCAATGTTAA 58.203 42.857 2.24 0.00 0.00 2.01
1321 1365 2.752354 TCCACGGCCAATCAATGTTAAG 59.248 45.455 2.24 0.00 0.00 1.85
1322 1366 2.529151 CACGGCCAATCAATGTTAAGC 58.471 47.619 2.24 0.00 0.00 3.09
1323 1367 2.094803 CACGGCCAATCAATGTTAAGCA 60.095 45.455 2.24 0.00 0.00 3.91
1324 1368 2.560542 ACGGCCAATCAATGTTAAGCAA 59.439 40.909 2.24 0.00 0.00 3.91
1325 1369 2.923020 CGGCCAATCAATGTTAAGCAAC 59.077 45.455 2.24 0.00 35.06 4.17
1326 1370 3.261580 GGCCAATCAATGTTAAGCAACC 58.738 45.455 0.00 0.00 33.41 3.77
1327 1371 3.055891 GGCCAATCAATGTTAAGCAACCT 60.056 43.478 0.00 0.00 33.41 3.50
1328 1372 3.928375 GCCAATCAATGTTAAGCAACCTG 59.072 43.478 0.00 0.00 33.41 4.00
1329 1373 4.561326 GCCAATCAATGTTAAGCAACCTGT 60.561 41.667 0.00 0.00 33.41 4.00
1330 1374 5.336372 GCCAATCAATGTTAAGCAACCTGTA 60.336 40.000 0.00 0.00 33.41 2.74
1331 1375 6.686630 CCAATCAATGTTAAGCAACCTGTAA 58.313 36.000 0.00 0.00 33.41 2.41
1332 1376 7.151308 CCAATCAATGTTAAGCAACCTGTAAA 58.849 34.615 0.00 0.00 33.41 2.01
1333 1377 7.655328 CCAATCAATGTTAAGCAACCTGTAAAA 59.345 33.333 0.00 0.00 33.41 1.52
1334 1378 8.487176 CAATCAATGTTAAGCAACCTGTAAAAC 58.513 33.333 0.00 0.00 33.41 2.43
1335 1379 6.508777 TCAATGTTAAGCAACCTGTAAAACC 58.491 36.000 0.00 0.00 33.41 3.27
1336 1380 4.922471 TGTTAAGCAACCTGTAAAACCC 57.078 40.909 0.00 0.00 33.41 4.11
1337 1381 3.637694 TGTTAAGCAACCTGTAAAACCCC 59.362 43.478 0.00 0.00 33.41 4.95
1338 1382 1.324383 AAGCAACCTGTAAAACCCCG 58.676 50.000 0.00 0.00 0.00 5.73
1339 1383 0.184211 AGCAACCTGTAAAACCCCGT 59.816 50.000 0.00 0.00 0.00 5.28
1340 1384 1.420891 AGCAACCTGTAAAACCCCGTA 59.579 47.619 0.00 0.00 0.00 4.02
1341 1385 2.040679 AGCAACCTGTAAAACCCCGTAT 59.959 45.455 0.00 0.00 0.00 3.06
1342 1386 3.263937 AGCAACCTGTAAAACCCCGTATA 59.736 43.478 0.00 0.00 0.00 1.47
1343 1387 4.009002 GCAACCTGTAAAACCCCGTATAA 58.991 43.478 0.00 0.00 0.00 0.98
1344 1388 4.142622 GCAACCTGTAAAACCCCGTATAAC 60.143 45.833 0.00 0.00 0.00 1.89
1345 1389 5.247862 CAACCTGTAAAACCCCGTATAACT 58.752 41.667 0.00 0.00 0.00 2.24
1346 1390 5.089970 ACCTGTAAAACCCCGTATAACTC 57.910 43.478 0.00 0.00 0.00 3.01
1347 1391 4.080919 ACCTGTAAAACCCCGTATAACTCC 60.081 45.833 0.00 0.00 0.00 3.85
1348 1392 4.114794 CTGTAAAACCCCGTATAACTCCG 58.885 47.826 0.00 0.00 0.00 4.63
1349 1393 3.513515 TGTAAAACCCCGTATAACTCCGT 59.486 43.478 0.00 0.00 0.00 4.69
1350 1394 4.707448 TGTAAAACCCCGTATAACTCCGTA 59.293 41.667 0.00 0.00 0.00 4.02
1351 1395 3.801114 AAACCCCGTATAACTCCGTAC 57.199 47.619 0.00 0.00 0.00 3.67
1352 1396 1.308998 ACCCCGTATAACTCCGTACG 58.691 55.000 8.69 8.69 42.32 3.67
1353 1397 1.308998 CCCCGTATAACTCCGTACGT 58.691 55.000 15.21 0.00 41.40 3.57
1354 1398 1.264288 CCCCGTATAACTCCGTACGTC 59.736 57.143 15.21 0.00 41.40 4.34
1355 1399 2.213499 CCCGTATAACTCCGTACGTCT 58.787 52.381 15.21 0.00 41.40 4.18
1356 1400 3.390135 CCCGTATAACTCCGTACGTCTA 58.610 50.000 15.21 0.10 41.40 2.59
1357 1401 3.430218 CCCGTATAACTCCGTACGTCTAG 59.570 52.174 15.21 10.84 41.40 2.43
1358 1402 3.120854 CCGTATAACTCCGTACGTCTAGC 60.121 52.174 15.21 0.00 41.40 3.42
1359 1403 3.490896 CGTATAACTCCGTACGTCTAGCA 59.509 47.826 15.21 1.38 38.96 3.49
1364 1408 3.474600 ACTCCGTACGTCTAGCATACAT 58.525 45.455 15.21 0.00 0.00 2.29
1377 1421 1.227263 ATACATCAGCGTGCCCGAC 60.227 57.895 0.00 0.00 35.63 4.79
1424 1468 9.389755 GAGCTTCCTAGAATAAAGAGACAAAAT 57.610 33.333 0.00 0.00 0.00 1.82
1448 1492 1.490490 ACTCCAGTTGAGCCTTGAACA 59.510 47.619 0.00 0.00 45.61 3.18
1455 1499 0.601046 TGAGCCTTGAACACTCTGCG 60.601 55.000 0.00 0.00 0.00 5.18
1523 1567 1.603678 GCTGAACCGAAACCGACTGTA 60.604 52.381 0.00 0.00 0.00 2.74
1532 1576 1.329256 AACCGACTGTACTGCTGTCT 58.671 50.000 0.00 0.00 41.90 3.41
1616 1664 1.699343 CGTTCGTCCCACTCTCTTTC 58.301 55.000 0.00 0.00 0.00 2.62
1842 1891 3.411517 CAAGGGGATCGGGCCTGT 61.412 66.667 12.43 0.00 0.00 4.00
1948 1997 2.962569 CGGAAGTGGAGCGAGTCA 59.037 61.111 0.00 0.00 0.00 3.41
2078 2127 2.741092 GTGACAACCCTCGCCTCA 59.259 61.111 0.00 0.00 0.00 3.86
2083 2132 1.201429 ACAACCCTCGCCTCATCCTT 61.201 55.000 0.00 0.00 0.00 3.36
2260 2309 0.388134 ATTGTTCGTACTGCGTCGCT 60.388 50.000 19.50 0.87 42.13 4.93
2400 2449 9.767684 CAGTTTATATTAATTGTCGCTCAAACA 57.232 29.630 0.00 0.00 39.62 2.83
2473 2525 9.831737 CTTAATAGCAATATGGTTACAATCAGC 57.168 33.333 0.00 0.00 0.00 4.26
2508 2560 4.104183 GGAAATCACGGCGGGGGA 62.104 66.667 10.28 4.77 0.00 4.81
2637 2689 1.565759 TGGATATGCATATGAGGGGGC 59.434 52.381 23.76 7.29 0.00 5.80
2698 2904 9.496710 TTTTTAGATTCTAGTACATCCACCCTA 57.503 33.333 0.00 0.00 0.00 3.53
2730 2936 9.287818 AGGGGATTTTAACCTAGTTAGATACAA 57.712 33.333 0.00 0.00 31.53 2.41
2852 3058 6.482973 CAGAAAATACATTTGGGCAAACAACT 59.517 34.615 0.00 0.00 32.51 3.16
2854 3060 8.207545 AGAAAATACATTTGGGCAAACAACTAA 58.792 29.630 0.00 0.00 32.51 2.24
2928 3134 1.698532 TGGCATTTTCCCACTTGCATT 59.301 42.857 0.00 0.00 36.82 3.56
2944 3150 1.452108 ATTTAGCAGTGCTCGCCCC 60.452 57.895 23.64 0.00 40.44 5.80
3066 3272 2.509964 AGGACTTCAAAACTCTGGTGGT 59.490 45.455 0.00 0.00 0.00 4.16
3108 3315 7.537596 CAGTCTCTGGAATACCTCAATAGAT 57.462 40.000 0.00 0.00 37.04 1.98
3137 3344 7.554476 GTGGCAAGAGAAAGTTAGGAGATTTAT 59.446 37.037 0.00 0.00 0.00 1.40
3138 3345 8.109634 TGGCAAGAGAAAGTTAGGAGATTTATT 58.890 33.333 0.00 0.00 0.00 1.40
3139 3346 9.614792 GGCAAGAGAAAGTTAGGAGATTTATTA 57.385 33.333 0.00 0.00 0.00 0.98
3198 3405 8.414629 AGGCAGATCTAAGAAGAAACAAAAAT 57.585 30.769 0.00 0.00 34.73 1.82
3253 3460 1.327303 AGCTGAGAATAGGGAGCTCG 58.673 55.000 7.83 0.00 37.17 5.03
3254 3461 0.316841 GCTGAGAATAGGGAGCTCGG 59.683 60.000 7.83 0.00 37.93 4.63
3344 3551 6.084326 GGTGAAAGCTAAACAAAGATCCAA 57.916 37.500 0.00 0.00 0.00 3.53
3346 3553 7.154656 GGTGAAAGCTAAACAAAGATCCAAAT 58.845 34.615 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 123 5.146010 AGGTGCTTTTTCAAAGTTGTTGA 57.854 34.783 0.00 0.00 0.00 3.18
320 329 1.821753 CATTTGGATTGGCCCGTACAA 59.178 47.619 0.00 0.00 34.97 2.41
445 459 7.111247 AGACACATCCTTTTGAAAATGTCAA 57.889 32.000 18.11 0.00 44.74 3.18
455 469 9.743057 TTTTTACATTGTAGACACATCCTTTTG 57.257 29.630 0.00 0.00 33.76 2.44
518 535 6.000219 AGGACATGCCACATATATTCTGTTC 59.000 40.000 8.58 0.00 40.02 3.18
902 946 1.296392 CTTGACGGGACATGGCTGA 59.704 57.895 0.00 0.00 0.00 4.26
904 948 1.779061 AACCTTGACGGGACATGGCT 61.779 55.000 0.00 0.00 36.97 4.75
907 951 4.839668 TTTTAAACCTTGACGGGACATG 57.160 40.909 0.00 0.00 36.97 3.21
912 956 4.093850 CGGTCTATTTTAAACCTTGACGGG 59.906 45.833 0.00 0.00 36.97 5.28
914 958 4.093850 CCCGGTCTATTTTAAACCTTGACG 59.906 45.833 0.00 0.00 0.00 4.35
953 997 8.675504 CAAACTCTTAATCTCTGAAATCAGCAT 58.324 33.333 5.53 0.00 43.46 3.79
1045 1089 2.997897 GTCGGAGGGTGCTGACCT 60.998 66.667 0.00 0.00 42.66 3.85
1046 1090 3.302347 CTGTCGGAGGGTGCTGACC 62.302 68.421 0.00 0.00 42.25 4.02
1047 1091 2.262915 CTGTCGGAGGGTGCTGAC 59.737 66.667 0.00 0.00 43.03 3.51
1048 1092 2.997315 CCTGTCGGAGGGTGCTGA 60.997 66.667 0.00 0.00 38.36 4.26
1049 1093 2.997315 TCCTGTCGGAGGGTGCTG 60.997 66.667 2.02 0.00 43.06 4.41
1057 1101 2.044650 CCGGTACCTCCTGTCGGA 60.045 66.667 10.90 0.00 42.94 4.55
1058 1102 3.145551 CCCGGTACCTCCTGTCGG 61.146 72.222 10.90 3.86 40.32 4.79
1059 1103 3.834799 GCCCGGTACCTCCTGTCG 61.835 72.222 10.90 0.00 0.00 4.35
1060 1104 2.682494 TGCCCGGTACCTCCTGTC 60.682 66.667 10.90 0.00 0.00 3.51
1061 1105 3.001406 GTGCCCGGTACCTCCTGT 61.001 66.667 10.90 0.00 0.00 4.00
1062 1106 4.143333 CGTGCCCGGTACCTCCTG 62.143 72.222 10.90 0.00 0.00 3.86
1063 1107 2.786512 TTACGTGCCCGGTACCTCCT 62.787 60.000 10.90 0.00 38.78 3.69
1064 1108 1.679559 ATTACGTGCCCGGTACCTCC 61.680 60.000 10.90 0.00 38.78 4.30
1065 1109 0.249197 GATTACGTGCCCGGTACCTC 60.249 60.000 10.90 0.00 38.78 3.85
1066 1110 1.818555 GATTACGTGCCCGGTACCT 59.181 57.895 10.90 0.00 38.78 3.08
1067 1111 1.589727 CGATTACGTGCCCGGTACC 60.590 63.158 0.16 0.16 38.78 3.34
1068 1112 0.867329 GTCGATTACGTGCCCGGTAC 60.867 60.000 0.00 0.00 40.69 3.34
1069 1113 1.433064 GTCGATTACGTGCCCGGTA 59.567 57.895 0.00 0.00 40.69 4.02
1070 1114 2.182537 GTCGATTACGTGCCCGGT 59.817 61.111 0.00 0.00 40.69 5.28
1071 1115 2.952783 CGTCGATTACGTGCCCGG 60.953 66.667 0.00 0.00 46.72 5.73
1079 1123 0.437295 AAACTGCGCACGTCGATTAC 59.563 50.000 5.66 0.00 41.67 1.89
1080 1124 1.136474 CAAAACTGCGCACGTCGATTA 60.136 47.619 5.66 0.00 41.67 1.75
1081 1125 0.384230 CAAAACTGCGCACGTCGATT 60.384 50.000 5.66 0.00 41.67 3.34
1082 1126 1.204062 CAAAACTGCGCACGTCGAT 59.796 52.632 5.66 0.00 41.67 3.59
1083 1127 2.623718 CAAAACTGCGCACGTCGA 59.376 55.556 5.66 0.00 41.67 4.20
1084 1128 3.085010 GCAAAACTGCGCACGTCG 61.085 61.111 5.66 0.00 42.12 5.12
1085 1129 1.330080 GATGCAAAACTGCGCACGTC 61.330 55.000 5.66 2.46 41.79 4.34
1086 1130 1.370414 GATGCAAAACTGCGCACGT 60.370 52.632 5.66 6.30 41.79 4.49
1087 1131 2.419895 CGATGCAAAACTGCGCACG 61.420 57.895 5.66 5.54 41.79 5.34
1088 1132 2.082366 CCGATGCAAAACTGCGCAC 61.082 57.895 5.66 0.00 41.79 5.34
1089 1133 2.254951 CCGATGCAAAACTGCGCA 59.745 55.556 10.98 10.98 43.45 6.09
1090 1134 2.470801 TTCCCGATGCAAAACTGCGC 62.471 55.000 0.00 0.00 37.69 6.09
1091 1135 0.729140 GTTCCCGATGCAAAACTGCG 60.729 55.000 0.00 0.00 37.69 5.18
1092 1136 0.729140 CGTTCCCGATGCAAAACTGC 60.729 55.000 0.00 0.00 35.63 4.40
1093 1137 0.729140 GCGTTCCCGATGCAAAACTG 60.729 55.000 0.00 0.00 40.14 3.16
1094 1138 1.169661 TGCGTTCCCGATGCAAAACT 61.170 50.000 0.00 0.00 46.90 2.66
1095 1139 1.284408 TGCGTTCCCGATGCAAAAC 59.716 52.632 0.00 0.00 46.90 2.43
1096 1140 3.751342 TGCGTTCCCGATGCAAAA 58.249 50.000 0.00 0.00 46.90 2.44
1100 1144 0.248215 CATCTTTGCGTTCCCGATGC 60.248 55.000 0.00 0.00 40.83 3.91
1101 1145 1.062587 GTCATCTTTGCGTTCCCGATG 59.937 52.381 0.00 0.00 35.63 3.84
1102 1146 1.066143 AGTCATCTTTGCGTTCCCGAT 60.066 47.619 0.00 0.00 35.63 4.18
1103 1147 0.320374 AGTCATCTTTGCGTTCCCGA 59.680 50.000 0.00 0.00 35.63 5.14
1104 1148 0.443869 CAGTCATCTTTGCGTTCCCG 59.556 55.000 0.00 0.00 37.07 5.14
1105 1149 1.197721 CACAGTCATCTTTGCGTTCCC 59.802 52.381 0.00 0.00 0.00 3.97
1106 1150 1.873591 ACACAGTCATCTTTGCGTTCC 59.126 47.619 0.00 0.00 0.00 3.62
1107 1151 2.802816 AGACACAGTCATCTTTGCGTTC 59.197 45.455 0.00 0.00 34.60 3.95
1108 1152 2.838736 AGACACAGTCATCTTTGCGTT 58.161 42.857 0.00 0.00 34.60 4.84
1109 1153 2.533266 AGACACAGTCATCTTTGCGT 57.467 45.000 0.00 0.00 34.60 5.24
1110 1154 3.062763 AGAAGACACAGTCATCTTTGCG 58.937 45.455 0.00 0.00 37.32 4.85
1111 1155 3.812053 ACAGAAGACACAGTCATCTTTGC 59.188 43.478 2.48 0.00 38.33 3.68
1112 1156 7.411264 CGAATACAGAAGACACAGTCATCTTTG 60.411 40.741 2.48 0.00 38.33 2.77
1113 1157 6.587990 CGAATACAGAAGACACAGTCATCTTT 59.412 38.462 2.48 0.21 38.33 2.52
1114 1158 6.096036 CGAATACAGAAGACACAGTCATCTT 58.904 40.000 2.48 0.00 38.33 2.40
1115 1159 5.393569 CCGAATACAGAAGACACAGTCATCT 60.394 44.000 0.00 0.00 40.54 2.90
1116 1160 4.800993 CCGAATACAGAAGACACAGTCATC 59.199 45.833 0.00 0.00 34.60 2.92
1117 1161 4.220821 ACCGAATACAGAAGACACAGTCAT 59.779 41.667 0.00 0.00 34.60 3.06
1118 1162 3.572682 ACCGAATACAGAAGACACAGTCA 59.427 43.478 0.00 0.00 34.60 3.41
1119 1163 4.167268 GACCGAATACAGAAGACACAGTC 58.833 47.826 0.00 0.00 0.00 3.51
1120 1164 3.366070 CGACCGAATACAGAAGACACAGT 60.366 47.826 0.00 0.00 0.00 3.55
1121 1165 3.172050 CGACCGAATACAGAAGACACAG 58.828 50.000 0.00 0.00 0.00 3.66
1122 1166 2.555325 ACGACCGAATACAGAAGACACA 59.445 45.455 0.00 0.00 0.00 3.72
1123 1167 2.915463 CACGACCGAATACAGAAGACAC 59.085 50.000 0.00 0.00 0.00 3.67
1124 1168 2.670229 GCACGACCGAATACAGAAGACA 60.670 50.000 0.00 0.00 0.00 3.41
1125 1169 1.918609 GCACGACCGAATACAGAAGAC 59.081 52.381 0.00 0.00 0.00 3.01
1126 1170 1.542472 TGCACGACCGAATACAGAAGA 59.458 47.619 0.00 0.00 0.00 2.87
1127 1171 1.920574 CTGCACGACCGAATACAGAAG 59.079 52.381 0.00 0.00 0.00 2.85
1128 1172 1.271379 ACTGCACGACCGAATACAGAA 59.729 47.619 0.00 0.00 0.00 3.02
1129 1173 0.885879 ACTGCACGACCGAATACAGA 59.114 50.000 0.00 0.00 0.00 3.41
1130 1174 1.269166 GACTGCACGACCGAATACAG 58.731 55.000 0.00 0.00 0.00 2.74
1131 1175 0.599060 TGACTGCACGACCGAATACA 59.401 50.000 0.00 0.00 0.00 2.29
1132 1176 1.705256 TTGACTGCACGACCGAATAC 58.295 50.000 0.00 0.00 0.00 1.89
1133 1177 2.442212 TTTGACTGCACGACCGAATA 57.558 45.000 0.00 0.00 0.00 1.75
1134 1178 1.588674 TTTTGACTGCACGACCGAAT 58.411 45.000 0.00 0.00 0.00 3.34
1135 1179 1.529438 GATTTTGACTGCACGACCGAA 59.471 47.619 0.00 0.00 0.00 4.30
1136 1180 1.144969 GATTTTGACTGCACGACCGA 58.855 50.000 0.00 0.00 0.00 4.69
1137 1181 0.165944 GGATTTTGACTGCACGACCG 59.834 55.000 0.00 0.00 0.00 4.79
1138 1182 1.197721 CAGGATTTTGACTGCACGACC 59.802 52.381 0.00 0.00 0.00 4.79
1139 1183 2.601481 CAGGATTTTGACTGCACGAC 57.399 50.000 0.00 0.00 0.00 4.34
1145 1189 4.872691 AGATCTAACGCAGGATTTTGACTG 59.127 41.667 0.00 0.00 37.76 3.51
1146 1190 5.091261 AGATCTAACGCAGGATTTTGACT 57.909 39.130 0.00 0.00 0.00 3.41
1147 1191 4.271291 GGAGATCTAACGCAGGATTTTGAC 59.729 45.833 0.00 0.00 0.00 3.18
1148 1192 4.162320 AGGAGATCTAACGCAGGATTTTGA 59.838 41.667 0.00 0.00 0.00 2.69
1149 1193 4.272018 CAGGAGATCTAACGCAGGATTTTG 59.728 45.833 0.00 0.00 0.00 2.44
1150 1194 4.446371 CAGGAGATCTAACGCAGGATTTT 58.554 43.478 0.00 0.00 0.00 1.82
1151 1195 3.181461 CCAGGAGATCTAACGCAGGATTT 60.181 47.826 0.00 0.00 0.00 2.17
1152 1196 2.366916 CCAGGAGATCTAACGCAGGATT 59.633 50.000 0.00 0.00 0.00 3.01
1153 1197 1.967066 CCAGGAGATCTAACGCAGGAT 59.033 52.381 0.00 0.00 0.00 3.24
1154 1198 1.063942 TCCAGGAGATCTAACGCAGGA 60.064 52.381 0.00 0.44 0.00 3.86
1155 1199 1.067821 GTCCAGGAGATCTAACGCAGG 59.932 57.143 0.00 0.00 0.00 4.85
1156 1200 1.751351 TGTCCAGGAGATCTAACGCAG 59.249 52.381 0.00 0.00 0.00 5.18
1157 1201 1.847328 TGTCCAGGAGATCTAACGCA 58.153 50.000 0.00 0.00 0.00 5.24
1158 1202 3.460857 AATGTCCAGGAGATCTAACGC 57.539 47.619 0.00 0.00 0.00 4.84
1159 1203 5.515797 TGTAATGTCCAGGAGATCTAACG 57.484 43.478 0.00 0.00 0.00 3.18
1160 1204 7.055667 TCATGTAATGTCCAGGAGATCTAAC 57.944 40.000 0.00 0.23 46.80 2.34
1161 1205 6.239430 GCTCATGTAATGTCCAGGAGATCTAA 60.239 42.308 0.00 0.00 46.80 2.10
1162 1206 5.244851 GCTCATGTAATGTCCAGGAGATCTA 59.755 44.000 0.00 0.00 46.80 1.98
1163 1207 4.040217 GCTCATGTAATGTCCAGGAGATCT 59.960 45.833 0.00 0.00 46.80 2.75
1164 1208 4.202295 TGCTCATGTAATGTCCAGGAGATC 60.202 45.833 0.00 0.00 46.80 2.75
1165 1209 3.713248 TGCTCATGTAATGTCCAGGAGAT 59.287 43.478 6.28 0.00 46.80 2.75
1166 1210 3.106827 TGCTCATGTAATGTCCAGGAGA 58.893 45.455 6.28 0.00 46.80 3.71
1167 1211 3.548745 TGCTCATGTAATGTCCAGGAG 57.451 47.619 0.00 0.00 46.80 3.69
1168 1212 3.998913 TTGCTCATGTAATGTCCAGGA 57.001 42.857 0.00 0.00 46.80 3.86
1169 1213 5.389859 TTTTTGCTCATGTAATGTCCAGG 57.610 39.130 0.00 0.00 46.80 4.45
1170 1214 5.290158 GCATTTTTGCTCATGTAATGTCCAG 59.710 40.000 0.00 0.00 46.80 3.86
1171 1215 5.047164 AGCATTTTTGCTCATGTAATGTCCA 60.047 36.000 0.00 0.00 46.80 4.02
1172 1216 5.413499 AGCATTTTTGCTCATGTAATGTCC 58.587 37.500 0.00 0.00 46.80 4.02
1173 1217 7.008628 GTGTAGCATTTTTGCTCATGTAATGTC 59.991 37.037 3.35 0.00 46.80 3.06
1174 1218 6.808212 GTGTAGCATTTTTGCTCATGTAATGT 59.192 34.615 3.35 0.00 46.80 2.71
1176 1220 6.029607 CGTGTAGCATTTTTGCTCATGTAAT 58.970 36.000 3.35 0.00 45.00 1.89
1177 1221 5.049060 ACGTGTAGCATTTTTGCTCATGTAA 60.049 36.000 16.45 0.00 45.00 2.41
1178 1222 4.454161 ACGTGTAGCATTTTTGCTCATGTA 59.546 37.500 16.45 0.00 45.00 2.29
1179 1223 3.253188 ACGTGTAGCATTTTTGCTCATGT 59.747 39.130 3.35 10.46 45.00 3.21
1180 1224 3.825308 ACGTGTAGCATTTTTGCTCATG 58.175 40.909 3.35 9.93 45.00 3.07
1181 1225 4.454161 TGTACGTGTAGCATTTTTGCTCAT 59.546 37.500 3.35 0.00 45.00 2.90
1182 1226 3.810386 TGTACGTGTAGCATTTTTGCTCA 59.190 39.130 3.35 0.54 45.00 4.26
1183 1227 4.151689 TCTGTACGTGTAGCATTTTTGCTC 59.848 41.667 3.35 0.00 45.00 4.26
1185 1229 4.148891 GTCTGTACGTGTAGCATTTTTGC 58.851 43.478 0.00 0.00 0.00 3.68
1186 1230 5.137403 GTGTCTGTACGTGTAGCATTTTTG 58.863 41.667 0.00 0.00 0.00 2.44
1187 1231 4.812091 TGTGTCTGTACGTGTAGCATTTTT 59.188 37.500 0.00 0.00 0.00 1.94
1188 1232 4.373527 TGTGTCTGTACGTGTAGCATTTT 58.626 39.130 0.00 0.00 0.00 1.82
1189 1233 3.985008 TGTGTCTGTACGTGTAGCATTT 58.015 40.909 0.00 0.00 0.00 2.32
1190 1234 3.653539 TGTGTCTGTACGTGTAGCATT 57.346 42.857 0.00 0.00 0.00 3.56
1191 1235 3.868757 ATGTGTCTGTACGTGTAGCAT 57.131 42.857 0.00 0.00 0.00 3.79
1192 1236 3.243602 ACAATGTGTCTGTACGTGTAGCA 60.244 43.478 0.00 0.00 0.00 3.49
1193 1237 3.314553 ACAATGTGTCTGTACGTGTAGC 58.685 45.455 0.00 0.00 0.00 3.58
1194 1238 5.987264 GTACAATGTGTCTGTACGTGTAG 57.013 43.478 0.00 0.00 39.69 2.74
1200 1244 6.613755 AAAACCTGTACAATGTGTCTGTAC 57.386 37.500 0.00 6.24 46.16 2.90
1201 1245 7.769507 TGTAAAAACCTGTACAATGTGTCTGTA 59.230 33.333 0.00 0.00 0.00 2.74
1202 1246 6.600032 TGTAAAAACCTGTACAATGTGTCTGT 59.400 34.615 0.00 0.00 0.00 3.41
1203 1247 7.022055 TGTAAAAACCTGTACAATGTGTCTG 57.978 36.000 0.00 0.00 0.00 3.51
1204 1248 6.262273 CCTGTAAAAACCTGTACAATGTGTCT 59.738 38.462 0.00 0.00 30.11 3.41
1205 1249 6.038936 ACCTGTAAAAACCTGTACAATGTGTC 59.961 38.462 0.00 0.00 30.11 3.67
1206 1250 5.889289 ACCTGTAAAAACCTGTACAATGTGT 59.111 36.000 0.00 0.00 30.11 3.72
1207 1251 6.385649 ACCTGTAAAAACCTGTACAATGTG 57.614 37.500 0.00 0.00 30.11 3.21
1208 1252 6.603997 TCAACCTGTAAAAACCTGTACAATGT 59.396 34.615 0.00 0.00 30.11 2.71
1209 1253 7.033530 TCAACCTGTAAAAACCTGTACAATG 57.966 36.000 0.00 0.00 30.11 2.82
1210 1254 6.264518 CCTCAACCTGTAAAAACCTGTACAAT 59.735 38.462 0.00 0.00 30.11 2.71
1211 1255 5.591067 CCTCAACCTGTAAAAACCTGTACAA 59.409 40.000 0.00 0.00 30.11 2.41
1212 1256 5.104444 TCCTCAACCTGTAAAAACCTGTACA 60.104 40.000 0.00 0.00 0.00 2.90
1213 1257 5.237996 GTCCTCAACCTGTAAAAACCTGTAC 59.762 44.000 0.00 0.00 0.00 2.90
1214 1258 5.131475 AGTCCTCAACCTGTAAAAACCTGTA 59.869 40.000 0.00 0.00 0.00 2.74
1215 1259 4.079958 AGTCCTCAACCTGTAAAAACCTGT 60.080 41.667 0.00 0.00 0.00 4.00
1216 1260 4.275936 CAGTCCTCAACCTGTAAAAACCTG 59.724 45.833 0.00 0.00 0.00 4.00
1217 1261 4.461198 CAGTCCTCAACCTGTAAAAACCT 58.539 43.478 0.00 0.00 0.00 3.50
1218 1262 3.004419 GCAGTCCTCAACCTGTAAAAACC 59.996 47.826 0.00 0.00 0.00 3.27
1219 1263 3.303791 CGCAGTCCTCAACCTGTAAAAAC 60.304 47.826 0.00 0.00 0.00 2.43
1220 1264 2.875933 CGCAGTCCTCAACCTGTAAAAA 59.124 45.455 0.00 0.00 0.00 1.94
1221 1265 2.489971 CGCAGTCCTCAACCTGTAAAA 58.510 47.619 0.00 0.00 0.00 1.52
1222 1266 1.876416 GCGCAGTCCTCAACCTGTAAA 60.876 52.381 0.30 0.00 0.00 2.01
1223 1267 0.320421 GCGCAGTCCTCAACCTGTAA 60.320 55.000 0.30 0.00 0.00 2.41
1224 1268 1.292223 GCGCAGTCCTCAACCTGTA 59.708 57.895 0.30 0.00 0.00 2.74
1225 1269 2.031163 GCGCAGTCCTCAACCTGT 59.969 61.111 0.30 0.00 0.00 4.00
1226 1270 3.114616 CGCGCAGTCCTCAACCTG 61.115 66.667 8.75 0.00 0.00 4.00
1229 1273 3.482783 GAGCGCGCAGTCCTCAAC 61.483 66.667 35.10 8.52 0.00 3.18
1230 1274 3.226429 AAGAGCGCGCAGTCCTCAA 62.226 57.895 35.10 0.00 0.00 3.02
1231 1275 3.633094 GAAGAGCGCGCAGTCCTCA 62.633 63.158 35.10 0.00 0.00 3.86
1232 1276 1.994507 TAGAAGAGCGCGCAGTCCTC 61.995 60.000 35.10 21.19 0.00 3.71
1233 1277 1.595993 TTAGAAGAGCGCGCAGTCCT 61.596 55.000 35.10 24.64 0.00 3.85
1234 1278 0.528684 ATTAGAAGAGCGCGCAGTCC 60.529 55.000 35.10 18.94 0.00 3.85
1235 1279 1.005557 CAATTAGAAGAGCGCGCAGTC 60.006 52.381 35.10 25.19 0.00 3.51
1236 1280 1.002366 CAATTAGAAGAGCGCGCAGT 58.998 50.000 35.10 17.48 0.00 4.40
1237 1281 1.005557 GTCAATTAGAAGAGCGCGCAG 60.006 52.381 35.10 9.10 0.00 5.18
1238 1282 0.999406 GTCAATTAGAAGAGCGCGCA 59.001 50.000 35.10 11.28 0.00 6.09
1239 1283 0.301987 GGTCAATTAGAAGAGCGCGC 59.698 55.000 26.66 26.66 0.00 6.86
1240 1284 0.931005 GGGTCAATTAGAAGAGCGCG 59.069 55.000 0.00 0.00 33.28 6.86
1241 1285 2.205911 GAGGGTCAATTAGAAGAGCGC 58.794 52.381 0.00 0.00 33.28 5.92
1242 1286 2.464865 CGAGGGTCAATTAGAAGAGCG 58.535 52.381 0.00 0.00 33.28 5.03
1243 1287 2.159028 AGCGAGGGTCAATTAGAAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
1244 1288 3.810310 AGCGAGGGTCAATTAGAAGAG 57.190 47.619 0.00 0.00 0.00 2.85
1245 1289 5.670792 TTAAGCGAGGGTCAATTAGAAGA 57.329 39.130 0.00 0.00 0.00 2.87
1246 1290 6.927294 AATTAAGCGAGGGTCAATTAGAAG 57.073 37.500 0.00 0.00 0.00 2.85
1247 1291 7.392113 TGAAAATTAAGCGAGGGTCAATTAGAA 59.608 33.333 0.00 0.00 0.00 2.10
1248 1292 6.882140 TGAAAATTAAGCGAGGGTCAATTAGA 59.118 34.615 0.00 0.00 0.00 2.10
1249 1293 7.083875 TGAAAATTAAGCGAGGGTCAATTAG 57.916 36.000 0.00 0.00 0.00 1.73
1250 1294 7.466725 CGATGAAAATTAAGCGAGGGTCAATTA 60.467 37.037 0.00 0.00 0.00 1.40
1251 1295 5.975693 TGAAAATTAAGCGAGGGTCAATT 57.024 34.783 0.00 0.00 0.00 2.32
1252 1296 5.220854 CGATGAAAATTAAGCGAGGGTCAAT 60.221 40.000 0.00 0.00 0.00 2.57
1253 1297 4.094294 CGATGAAAATTAAGCGAGGGTCAA 59.906 41.667 0.00 0.00 0.00 3.18
1254 1298 3.621268 CGATGAAAATTAAGCGAGGGTCA 59.379 43.478 0.00 0.00 0.00 4.02
1255 1299 3.002348 CCGATGAAAATTAAGCGAGGGTC 59.998 47.826 0.00 0.00 0.00 4.46
1256 1300 2.943033 CCGATGAAAATTAAGCGAGGGT 59.057 45.455 0.00 0.00 0.00 4.34
1257 1301 2.943033 ACCGATGAAAATTAAGCGAGGG 59.057 45.455 0.00 0.00 0.00 4.30
1258 1302 3.621268 TCACCGATGAAAATTAAGCGAGG 59.379 43.478 0.00 0.00 0.00 4.63
1259 1303 4.783450 GCTCACCGATGAAAATTAAGCGAG 60.783 45.833 0.00 0.00 33.30 5.03
1260 1304 3.063452 GCTCACCGATGAAAATTAAGCGA 59.937 43.478 0.00 0.00 33.30 4.93
1261 1305 3.354397 GCTCACCGATGAAAATTAAGCG 58.646 45.455 0.00 0.00 33.30 4.68
1262 1306 3.489229 GGGCTCACCGATGAAAATTAAGC 60.489 47.826 0.00 0.00 36.48 3.09
1263 1307 4.292977 GGGCTCACCGATGAAAATTAAG 57.707 45.455 0.00 0.00 36.48 1.85
1276 1320 2.775032 TTAAGACGCACGGGCTCACC 62.775 60.000 8.62 0.00 38.10 4.02
1277 1321 0.739813 ATTAAGACGCACGGGCTCAC 60.740 55.000 8.62 0.00 38.10 3.51
1278 1322 0.459585 GATTAAGACGCACGGGCTCA 60.460 55.000 8.62 0.00 38.10 4.26
1279 1323 0.459585 TGATTAAGACGCACGGGCTC 60.460 55.000 8.62 4.33 38.10 4.70
1280 1324 0.036765 TTGATTAAGACGCACGGGCT 60.037 50.000 8.62 0.00 38.10 5.19
1281 1325 1.003866 GATTGATTAAGACGCACGGGC 60.004 52.381 0.00 0.00 0.00 6.13
1282 1326 1.597663 GGATTGATTAAGACGCACGGG 59.402 52.381 0.00 0.00 0.00 5.28
1283 1327 2.030457 GTGGATTGATTAAGACGCACGG 59.970 50.000 0.00 0.00 0.00 4.94
1284 1328 2.285026 CGTGGATTGATTAAGACGCACG 60.285 50.000 0.00 0.00 0.00 5.34
1285 1329 2.030457 CCGTGGATTGATTAAGACGCAC 59.970 50.000 0.00 0.00 0.00 5.34
1286 1330 2.276201 CCGTGGATTGATTAAGACGCA 58.724 47.619 0.00 0.00 0.00 5.24
1287 1331 1.003866 GCCGTGGATTGATTAAGACGC 60.004 52.381 0.00 0.00 0.00 5.19
1288 1332 1.597663 GGCCGTGGATTGATTAAGACG 59.402 52.381 0.00 0.00 0.00 4.18
1289 1333 2.639065 TGGCCGTGGATTGATTAAGAC 58.361 47.619 0.00 0.00 0.00 3.01
1290 1334 3.358111 TTGGCCGTGGATTGATTAAGA 57.642 42.857 0.00 0.00 0.00 2.10
1291 1335 3.631686 TGATTGGCCGTGGATTGATTAAG 59.368 43.478 0.00 0.00 0.00 1.85
1292 1336 3.625853 TGATTGGCCGTGGATTGATTAA 58.374 40.909 0.00 0.00 0.00 1.40
1293 1337 3.289407 TGATTGGCCGTGGATTGATTA 57.711 42.857 0.00 0.00 0.00 1.75
1294 1338 2.142356 TGATTGGCCGTGGATTGATT 57.858 45.000 0.00 0.00 0.00 2.57
1295 1339 2.142356 TTGATTGGCCGTGGATTGAT 57.858 45.000 0.00 0.00 0.00 2.57
1296 1340 1.750206 CATTGATTGGCCGTGGATTGA 59.250 47.619 0.00 0.00 0.00 2.57
1297 1341 1.477700 ACATTGATTGGCCGTGGATTG 59.522 47.619 0.00 0.00 0.00 2.67
1298 1342 1.851304 ACATTGATTGGCCGTGGATT 58.149 45.000 0.00 0.00 0.00 3.01
1299 1343 1.851304 AACATTGATTGGCCGTGGAT 58.149 45.000 0.00 0.00 0.00 3.41
1300 1344 2.498644 TAACATTGATTGGCCGTGGA 57.501 45.000 0.00 0.00 0.00 4.02
1301 1345 2.735126 GCTTAACATTGATTGGCCGTGG 60.735 50.000 0.00 0.00 0.00 4.94
1302 1346 2.094803 TGCTTAACATTGATTGGCCGTG 60.095 45.455 0.00 0.00 0.00 4.94
1303 1347 2.166829 TGCTTAACATTGATTGGCCGT 58.833 42.857 0.00 0.00 0.00 5.68
1304 1348 2.923020 GTTGCTTAACATTGATTGGCCG 59.077 45.455 0.00 0.00 0.00 6.13
1305 1349 3.055891 AGGTTGCTTAACATTGATTGGCC 60.056 43.478 0.00 0.00 0.00 5.36
1306 1350 3.928375 CAGGTTGCTTAACATTGATTGGC 59.072 43.478 0.00 0.00 0.00 4.52
1307 1351 5.138125 ACAGGTTGCTTAACATTGATTGG 57.862 39.130 0.00 0.00 0.00 3.16
1308 1352 8.487176 GTTTTACAGGTTGCTTAACATTGATTG 58.513 33.333 0.00 0.00 0.00 2.67
1309 1353 7.655732 GGTTTTACAGGTTGCTTAACATTGATT 59.344 33.333 0.00 0.00 0.00 2.57
1310 1354 7.151976 GGTTTTACAGGTTGCTTAACATTGAT 58.848 34.615 0.00 0.00 0.00 2.57
1311 1355 6.461788 GGGTTTTACAGGTTGCTTAACATTGA 60.462 38.462 0.00 0.00 0.00 2.57
1312 1356 5.694458 GGGTTTTACAGGTTGCTTAACATTG 59.306 40.000 0.00 0.00 0.00 2.82
1313 1357 5.221561 GGGGTTTTACAGGTTGCTTAACATT 60.222 40.000 0.00 0.00 0.00 2.71
1314 1358 4.282449 GGGGTTTTACAGGTTGCTTAACAT 59.718 41.667 0.00 0.00 0.00 2.71
1315 1359 3.637694 GGGGTTTTACAGGTTGCTTAACA 59.362 43.478 0.00 0.00 0.00 2.41
1316 1360 3.304861 CGGGGTTTTACAGGTTGCTTAAC 60.305 47.826 0.00 0.00 0.00 2.01
1317 1361 2.885894 CGGGGTTTTACAGGTTGCTTAA 59.114 45.455 0.00 0.00 0.00 1.85
1318 1362 2.158638 ACGGGGTTTTACAGGTTGCTTA 60.159 45.455 0.00 0.00 0.00 3.09
1319 1363 1.324383 CGGGGTTTTACAGGTTGCTT 58.676 50.000 0.00 0.00 0.00 3.91
1320 1364 0.184211 ACGGGGTTTTACAGGTTGCT 59.816 50.000 0.00 0.00 0.00 3.91
1321 1365 1.894881 TACGGGGTTTTACAGGTTGC 58.105 50.000 0.00 0.00 0.00 4.17
1322 1366 5.247862 AGTTATACGGGGTTTTACAGGTTG 58.752 41.667 0.00 0.00 0.00 3.77
1323 1367 5.491070 GAGTTATACGGGGTTTTACAGGTT 58.509 41.667 0.00 0.00 0.00 3.50
1324 1368 4.080919 GGAGTTATACGGGGTTTTACAGGT 60.081 45.833 0.00 0.00 0.00 4.00
1325 1369 4.445453 GGAGTTATACGGGGTTTTACAGG 58.555 47.826 0.00 0.00 0.00 4.00
1326 1370 4.114794 CGGAGTTATACGGGGTTTTACAG 58.885 47.826 0.00 0.00 0.00 2.74
1327 1371 3.513515 ACGGAGTTATACGGGGTTTTACA 59.486 43.478 0.00 0.00 37.78 2.41
1328 1372 4.123497 ACGGAGTTATACGGGGTTTTAC 57.877 45.455 0.00 0.00 37.78 2.01
1329 1373 4.201970 CGTACGGAGTTATACGGGGTTTTA 60.202 45.833 7.57 0.00 37.78 1.52
1330 1374 3.428862 CGTACGGAGTTATACGGGGTTTT 60.429 47.826 7.57 0.00 37.78 2.43
1331 1375 2.099098 CGTACGGAGTTATACGGGGTTT 59.901 50.000 7.57 0.00 37.78 3.27
1332 1376 1.676006 CGTACGGAGTTATACGGGGTT 59.324 52.381 7.57 0.00 37.78 4.11
1333 1377 1.308998 CGTACGGAGTTATACGGGGT 58.691 55.000 7.57 0.00 37.78 4.95
1334 1378 1.264288 GACGTACGGAGTTATACGGGG 59.736 57.143 21.06 0.00 46.59 5.73
1335 1379 2.213499 AGACGTACGGAGTTATACGGG 58.787 52.381 21.06 0.00 46.59 5.28
1336 1380 3.120854 GCTAGACGTACGGAGTTATACGG 60.121 52.174 21.06 0.00 46.59 4.02
1338 1382 5.604010 ATGCTAGACGTACGGAGTTATAC 57.396 43.478 21.06 1.74 37.78 1.47
1339 1383 6.223120 TGTATGCTAGACGTACGGAGTTATA 58.777 40.000 21.06 12.54 37.78 0.98
1340 1384 5.059161 TGTATGCTAGACGTACGGAGTTAT 58.941 41.667 21.06 13.36 37.78 1.89
1341 1385 4.441792 TGTATGCTAGACGTACGGAGTTA 58.558 43.478 21.06 7.71 37.78 2.24
1342 1386 3.273434 TGTATGCTAGACGTACGGAGTT 58.727 45.455 21.06 0.00 37.78 3.01
1343 1387 2.910199 TGTATGCTAGACGTACGGAGT 58.090 47.619 21.06 5.86 42.74 3.85
1344 1388 3.497262 TGATGTATGCTAGACGTACGGAG 59.503 47.826 21.06 14.21 42.74 4.63
1345 1389 3.469739 TGATGTATGCTAGACGTACGGA 58.530 45.455 21.06 3.34 42.74 4.69
1346 1390 3.811514 CTGATGTATGCTAGACGTACGG 58.188 50.000 21.06 2.24 42.74 4.02
1347 1391 3.227147 GCTGATGTATGCTAGACGTACG 58.773 50.000 15.01 15.01 42.74 3.67
1348 1392 3.227147 CGCTGATGTATGCTAGACGTAC 58.773 50.000 0.00 1.89 40.61 3.67
1349 1393 2.876550 ACGCTGATGTATGCTAGACGTA 59.123 45.455 0.00 0.00 0.00 3.57
1350 1394 1.676529 ACGCTGATGTATGCTAGACGT 59.323 47.619 0.00 0.00 0.00 4.34
1351 1395 2.047040 CACGCTGATGTATGCTAGACG 58.953 52.381 0.00 0.00 0.00 4.18
1352 1396 1.789464 GCACGCTGATGTATGCTAGAC 59.211 52.381 0.00 0.00 35.16 2.59
1353 1397 1.269778 GGCACGCTGATGTATGCTAGA 60.270 52.381 0.00 0.00 38.18 2.43
1354 1398 1.143305 GGCACGCTGATGTATGCTAG 58.857 55.000 0.00 0.00 38.18 3.42
1355 1399 0.249868 GGGCACGCTGATGTATGCTA 60.250 55.000 0.00 0.00 38.18 3.49
1356 1400 1.524621 GGGCACGCTGATGTATGCT 60.525 57.895 0.00 0.00 38.18 3.79
1357 1401 2.885676 CGGGCACGCTGATGTATGC 61.886 63.158 0.00 0.00 37.35 3.14
1358 1402 1.227234 TCGGGCACGCTGATGTATG 60.227 57.895 1.67 0.00 40.69 2.39
1359 1403 1.227263 GTCGGGCACGCTGATGTAT 60.227 57.895 1.67 0.00 40.69 2.29
1364 1408 4.717629 CGAAGTCGGGCACGCTGA 62.718 66.667 1.67 0.00 40.69 4.26
1424 1468 5.012664 TGTTCAAGGCTCAACTGGAGTAATA 59.987 40.000 9.86 0.00 45.88 0.98
1425 1469 4.202461 TGTTCAAGGCTCAACTGGAGTAAT 60.202 41.667 9.86 0.00 45.88 1.89
1427 1471 2.703536 TGTTCAAGGCTCAACTGGAGTA 59.296 45.455 9.86 0.00 45.88 2.59
1448 1492 1.153168 AAACTGGTGCACGCAGAGT 60.153 52.632 30.11 18.47 0.00 3.24
1455 1499 1.454847 TGGGGTCAAACTGGTGCAC 60.455 57.895 8.80 8.80 0.00 4.57
1461 1505 0.896940 ATGCAGCTGGGGTCAAACTG 60.897 55.000 17.12 0.00 33.02 3.16
1523 1567 0.831288 ACTGAGCCAGAGACAGCAGT 60.831 55.000 8.91 0.00 35.18 4.40
1532 1576 1.587043 CGGACGAAGACTGAGCCAGA 61.587 60.000 8.91 0.00 35.18 3.86
1616 1664 1.007387 GCACCCAACGAAGGCAAAG 60.007 57.895 0.00 0.00 0.00 2.77
1706 1755 2.539081 GGGCCTCCTTCCCTTGTGT 61.539 63.158 0.84 0.00 40.66 3.72
1708 1757 2.121506 TGGGCCTCCTTCCCTTGT 60.122 61.111 4.53 0.00 44.23 3.16
1881 1930 1.384525 CATCTCGACGTCCTCTTCCT 58.615 55.000 10.58 0.00 0.00 3.36
2083 2132 3.919973 GACGCCGCGGTTGTCCTTA 62.920 63.158 30.44 0.00 0.00 2.69
2116 2165 1.972198 TTCGCCATCACGAAGGAGT 59.028 52.632 0.00 0.00 46.39 3.85
2125 2174 1.153449 GGACACGGATTCGCCATCA 60.153 57.895 0.00 0.00 40.63 3.07
2128 2177 0.953471 CAAAGGACACGGATTCGCCA 60.953 55.000 0.00 0.00 40.63 5.69
2320 2369 6.811253 TGCAAGAAAAGATAACGGTACATT 57.189 33.333 0.00 0.00 0.00 2.71
2371 2420 8.902540 TGAGCGACAATTAATATAAACTGGAT 57.097 30.769 0.00 0.00 0.00 3.41
2450 2499 6.777091 TGGCTGATTGTAACCATATTGCTATT 59.223 34.615 0.00 0.00 0.00 1.73
2454 2503 4.916983 TGGCTGATTGTAACCATATTGC 57.083 40.909 0.00 0.00 0.00 3.56
2455 2504 6.757947 CCTTTTGGCTGATTGTAACCATATTG 59.242 38.462 0.00 0.00 30.85 1.90
2473 2525 2.031120 TCCTTGTTGACAGCCTTTTGG 58.969 47.619 0.00 0.00 44.18 3.28
2562 2614 9.155975 GATTACTTCTCAACTTAAGATTGCAGA 57.844 33.333 10.09 10.95 0.00 4.26
2622 2674 0.562177 TTTGGCCCCCTCATATGCAT 59.438 50.000 3.79 3.79 0.00 3.96
2637 2689 4.819769 CTCAGAGAGAAAGTCCTCTTTGG 58.180 47.826 10.29 0.89 43.11 3.28
2698 2904 6.417503 ACTAGGTTAAAATCCCCTCCAATT 57.582 37.500 0.00 0.00 0.00 2.32
2748 2954 5.036117 TGCCCATCTCTGGTTAGTATTTC 57.964 43.478 0.00 0.00 41.37 2.17
2754 2960 4.963318 TTATCTGCCCATCTCTGGTTAG 57.037 45.455 0.00 0.00 41.37 2.34
2761 2967 6.393171 GGCATTAAAATTATCTGCCCATCTC 58.607 40.000 12.75 0.00 45.26 2.75
2824 3030 5.404466 TTGCCCAAATGTATTTTCTGGAG 57.596 39.130 0.00 0.00 0.00 3.86
2928 3134 3.315142 CTGGGGCGAGCACTGCTAA 62.315 63.158 2.71 0.00 39.88 3.09
2944 3150 7.257790 TGGGATATGATTACTACCCAATCTG 57.742 40.000 0.00 0.00 43.34 2.90
3066 3272 6.100279 AGAGACTGGTGCATTCCAAATATCTA 59.900 38.462 0.00 0.00 37.01 1.98
3094 3300 5.372343 TGCCACACATCTATTGAGGTATT 57.628 39.130 0.00 0.00 35.27 1.89
3096 3302 4.469586 TCTTGCCACACATCTATTGAGGTA 59.530 41.667 0.00 0.00 35.27 3.08
3108 3315 3.135712 TCCTAACTTTCTCTTGCCACACA 59.864 43.478 0.00 0.00 0.00 3.72
3137 3344 1.860906 ACCCCTTGGTGGTTTTCCTAA 59.139 47.619 0.00 0.00 45.58 2.69
3138 3345 1.536644 ACCCCTTGGTGGTTTTCCTA 58.463 50.000 0.00 0.00 45.58 2.94
3139 3346 2.338721 ACCCCTTGGTGGTTTTCCT 58.661 52.632 0.00 0.00 45.58 3.36
3253 3460 1.484240 ACTATCTTGCTCCTGCTCACC 59.516 52.381 0.00 0.00 40.48 4.02
3254 3461 2.977772 ACTATCTTGCTCCTGCTCAC 57.022 50.000 0.00 0.00 40.48 3.51
3346 3553 8.561769 CCTATCTCCCTCCTTAATGTCTCTATA 58.438 40.741 0.00 0.00 0.00 1.31
3351 3558 5.688220 TCCTATCTCCCTCCTTAATGTCT 57.312 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.