Multiple sequence alignment - TraesCS5A01G072000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G072000 chr5A 100.000 3732 0 0 1 3732 82316968 82313237 0.000000e+00 6892
1 TraesCS5A01G072000 chr5A 91.324 438 34 2 3100 3535 82309028 82308593 2.480000e-166 595
2 TraesCS5A01G072000 chr5A 81.818 660 97 17 2038 2692 38744473 38745114 1.970000e-147 532
3 TraesCS5A01G072000 chr5A 84.314 153 11 8 3576 3715 82308387 82308235 1.810000e-28 137
4 TraesCS5A01G072000 chr5D 95.299 2893 90 20 479 3346 88525602 88522731 0.000000e+00 4547
5 TraesCS5A01G072000 chr5D 91.954 435 32 1 3014 3448 88521915 88521484 1.150000e-169 606
6 TraesCS5A01G072000 chr5D 82.256 665 99 13 2033 2692 513903039 513903689 1.170000e-154 556
7 TraesCS5A01G072000 chr5D 83.363 559 61 13 1995 2535 49293185 49293729 4.330000e-134 488
8 TraesCS5A01G072000 chr5D 89.247 93 3 1 3630 3715 88522728 88522636 3.940000e-20 110
9 TraesCS5A01G072000 chr5B 94.463 2691 96 17 460 3137 94101286 94098636 0.000000e+00 4095
10 TraesCS5A01G072000 chr5B 94.545 550 18 4 3074 3617 94098636 94098093 0.000000e+00 839
11 TraesCS5A01G072000 chr5B 85.260 692 78 9 1995 2667 51964498 51965184 0.000000e+00 691
12 TraesCS5A01G072000 chr5B 89.844 512 39 7 3217 3715 94096681 94096170 0.000000e+00 645
13 TraesCS5A01G072000 chr5B 80.048 421 55 15 3128 3546 51965495 51965888 6.100000e-73 285
14 TraesCS5A01G072000 chr5B 88.584 219 21 2 3014 3231 94096947 94096732 2.860000e-66 263
15 TraesCS5A01G072000 chr5B 81.982 222 30 8 1501 1719 93539884 93540098 2.960000e-41 180
16 TraesCS5A01G072000 chr2D 91.931 347 27 1 3055 3401 560757248 560757593 5.600000e-133 484
17 TraesCS5A01G072000 chr2B 91.111 360 28 4 3055 3413 669235855 669235499 5.600000e-133 484
18 TraesCS5A01G072000 chr2B 77.525 396 65 18 1493 1874 106457853 106458238 2.260000e-52 217
19 TraesCS5A01G072000 chr4B 94.444 198 7 2 246 442 569765084 569765278 6.060000e-78 302
20 TraesCS5A01G072000 chr4D 77.696 408 73 16 1478 1874 51287168 51287568 2.240000e-57 233
21 TraesCS5A01G072000 chr4A 78.205 390 67 16 1496 1874 545236913 545236531 2.240000e-57 233
22 TraesCS5A01G072000 chr1B 76.845 393 67 16 1496 1874 458107489 458107107 2.270000e-47 200
23 TraesCS5A01G072000 chr1B 79.730 222 31 11 232 442 595150581 595150363 8.350000e-32 148
24 TraesCS5A01G072000 chr7B 75.845 414 83 12 38 442 613644374 613643969 1.060000e-45 195
25 TraesCS5A01G072000 chr3D 80.498 241 33 11 214 443 557246216 557246453 4.960000e-39 172
26 TraesCS5A01G072000 chr6A 75.904 332 66 11 115 442 301749250 301748929 1.390000e-34 158
27 TraesCS5A01G072000 chr7A 73.702 289 62 11 159 442 714237940 714237661 2.370000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G072000 chr5A 82313237 82316968 3731 True 6892.000000 6892 100.000000 1 3732 1 chr5A.!!$R1 3731
1 TraesCS5A01G072000 chr5A 38744473 38745114 641 False 532.000000 532 81.818000 2038 2692 1 chr5A.!!$F1 654
2 TraesCS5A01G072000 chr5A 82308235 82309028 793 True 366.000000 595 87.819000 3100 3715 2 chr5A.!!$R2 615
3 TraesCS5A01G072000 chr5D 88521484 88525602 4118 True 1754.333333 4547 92.166667 479 3715 3 chr5D.!!$R1 3236
4 TraesCS5A01G072000 chr5D 513903039 513903689 650 False 556.000000 556 82.256000 2033 2692 1 chr5D.!!$F2 659
5 TraesCS5A01G072000 chr5D 49293185 49293729 544 False 488.000000 488 83.363000 1995 2535 1 chr5D.!!$F1 540
6 TraesCS5A01G072000 chr5B 94096170 94101286 5116 True 1460.500000 4095 91.859000 460 3715 4 chr5B.!!$R1 3255
7 TraesCS5A01G072000 chr5B 51964498 51965888 1390 False 488.000000 691 82.654000 1995 3546 2 chr5B.!!$F2 1551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.033366 GTGCGGCCCAAGACATTTTT 59.967 50.0 0.00 0.00 0.0 1.94 F
439 440 0.249955 CCCGCCGTAGTTCCCTAAAA 59.750 55.0 0.00 0.00 0.0 1.52 F
1524 1541 0.029567 CAGACTACATCGAGGCGGTC 59.970 60.0 12.85 12.85 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1477 0.827089 CTGCACACCCCATTTGGACA 60.827 55.000 0.0 0.0 37.39 4.02 R
1793 1810 1.002251 GATCTCCTCGTACTTCCTGCG 60.002 57.143 0.0 0.0 0.00 5.18 R
2742 2789 0.108329 TAGCTTTACAGTGGAGCGGC 60.108 55.000 0.0 0.0 41.19 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.951115 CACATGTTGTTGCACTGCT 57.049 47.368 0.00 0.00 0.00 4.24
19 20 1.762419 CACATGTTGTTGCACTGCTC 58.238 50.000 0.00 0.00 0.00 4.26
20 21 1.065851 CACATGTTGTTGCACTGCTCA 59.934 47.619 0.00 0.00 0.00 4.26
21 22 1.750206 ACATGTTGTTGCACTGCTCAA 59.250 42.857 1.98 5.49 0.00 3.02
22 23 2.121786 CATGTTGTTGCACTGCTCAAC 58.878 47.619 23.18 23.18 42.91 3.18
23 24 0.098552 TGTTGTTGCACTGCTCAACG 59.901 50.000 23.72 0.00 44.88 4.10
24 25 0.592247 GTTGTTGCACTGCTCAACGG 60.592 55.000 18.99 0.00 44.88 4.44
25 26 2.050985 GTTGCACTGCTCAACGGC 60.051 61.111 1.98 0.00 35.14 5.68
26 27 2.203195 TTGCACTGCTCAACGGCT 60.203 55.556 1.98 0.00 0.00 5.52
27 28 1.823470 TTGCACTGCTCAACGGCTT 60.823 52.632 1.98 0.00 0.00 4.35
28 29 1.785041 TTGCACTGCTCAACGGCTTC 61.785 55.000 1.98 0.00 0.00 3.86
29 30 2.970974 GCACTGCTCAACGGCTTCC 61.971 63.158 0.00 0.00 0.00 3.46
46 47 2.030562 CGAAGCCCGGTCAACTGT 59.969 61.111 0.00 0.00 33.91 3.55
47 48 2.317609 CGAAGCCCGGTCAACTGTG 61.318 63.158 0.00 0.00 33.91 3.66
48 49 1.966451 GAAGCCCGGTCAACTGTGG 60.966 63.158 0.00 0.00 0.00 4.17
49 50 2.391724 GAAGCCCGGTCAACTGTGGA 62.392 60.000 0.00 0.00 0.00 4.02
50 51 1.779061 AAGCCCGGTCAACTGTGGAT 61.779 55.000 0.00 0.00 0.00 3.41
51 52 1.303317 GCCCGGTCAACTGTGGATT 60.303 57.895 0.00 0.00 0.00 3.01
52 53 1.305930 GCCCGGTCAACTGTGGATTC 61.306 60.000 0.00 0.00 0.00 2.52
53 54 0.676782 CCCGGTCAACTGTGGATTCC 60.677 60.000 0.00 0.00 0.00 3.01
54 55 0.324943 CCGGTCAACTGTGGATTCCT 59.675 55.000 3.95 0.00 0.00 3.36
55 56 1.271379 CCGGTCAACTGTGGATTCCTT 60.271 52.381 3.95 0.00 0.00 3.36
56 57 2.027561 CCGGTCAACTGTGGATTCCTTA 60.028 50.000 3.95 0.00 0.00 2.69
57 58 3.262420 CGGTCAACTGTGGATTCCTTAG 58.738 50.000 3.95 4.91 0.00 2.18
58 59 3.610911 GGTCAACTGTGGATTCCTTAGG 58.389 50.000 3.95 0.00 0.00 2.69
59 60 3.010420 GTCAACTGTGGATTCCTTAGGC 58.990 50.000 3.95 0.00 0.00 3.93
60 61 2.642311 TCAACTGTGGATTCCTTAGGCA 59.358 45.455 3.95 0.00 0.00 4.75
61 62 3.266772 TCAACTGTGGATTCCTTAGGCAT 59.733 43.478 3.95 0.00 0.00 4.40
62 63 4.019174 CAACTGTGGATTCCTTAGGCATT 58.981 43.478 3.95 0.00 0.00 3.56
63 64 5.045213 TCAACTGTGGATTCCTTAGGCATTA 60.045 40.000 3.95 0.00 0.00 1.90
64 65 5.450818 ACTGTGGATTCCTTAGGCATTAA 57.549 39.130 3.95 0.00 0.00 1.40
65 66 6.018433 ACTGTGGATTCCTTAGGCATTAAT 57.982 37.500 3.95 0.00 0.00 1.40
66 67 6.064717 ACTGTGGATTCCTTAGGCATTAATC 58.935 40.000 3.95 0.00 0.00 1.75
67 68 5.385198 TGTGGATTCCTTAGGCATTAATCC 58.615 41.667 17.63 17.63 43.84 3.01
68 69 5.134339 TGTGGATTCCTTAGGCATTAATCCT 59.866 40.000 22.15 10.20 43.89 3.24
69 70 5.474876 GTGGATTCCTTAGGCATTAATCCTG 59.525 44.000 22.15 0.00 43.89 3.86
70 71 4.460731 GGATTCCTTAGGCATTAATCCTGC 59.539 45.833 17.34 4.29 41.49 4.85
71 72 4.796110 TTCCTTAGGCATTAATCCTGCT 57.204 40.909 13.60 0.00 39.60 4.24
72 73 4.090761 TCCTTAGGCATTAATCCTGCTG 57.909 45.455 13.60 0.00 39.60 4.41
73 74 3.716353 TCCTTAGGCATTAATCCTGCTGA 59.284 43.478 13.60 6.77 39.60 4.26
74 75 4.352001 TCCTTAGGCATTAATCCTGCTGAT 59.648 41.667 13.60 0.00 39.60 2.90
75 76 5.075493 CCTTAGGCATTAATCCTGCTGATT 58.925 41.667 13.60 7.14 45.64 2.57
76 77 5.048224 CCTTAGGCATTAATCCTGCTGATTG 60.048 44.000 13.60 0.00 43.57 2.67
77 78 2.626743 AGGCATTAATCCTGCTGATTGC 59.373 45.455 10.98 7.52 43.57 3.56
88 89 1.977056 GCTGATTGCATCTCCATCCA 58.023 50.000 0.00 0.00 42.31 3.41
89 90 2.515854 GCTGATTGCATCTCCATCCAT 58.484 47.619 0.00 0.00 42.31 3.41
90 91 2.229062 GCTGATTGCATCTCCATCCATG 59.771 50.000 0.00 0.00 42.31 3.66
91 92 3.751518 CTGATTGCATCTCCATCCATGA 58.248 45.455 0.00 0.00 0.00 3.07
92 93 3.483421 TGATTGCATCTCCATCCATGAC 58.517 45.455 0.00 0.00 0.00 3.06
93 94 2.353357 TTGCATCTCCATCCATGACC 57.647 50.000 0.00 0.00 0.00 4.02
94 95 1.514983 TGCATCTCCATCCATGACCT 58.485 50.000 0.00 0.00 0.00 3.85
95 96 2.693210 TGCATCTCCATCCATGACCTA 58.307 47.619 0.00 0.00 0.00 3.08
96 97 2.369860 TGCATCTCCATCCATGACCTAC 59.630 50.000 0.00 0.00 0.00 3.18
97 98 2.369860 GCATCTCCATCCATGACCTACA 59.630 50.000 0.00 0.00 0.00 2.74
98 99 3.556633 GCATCTCCATCCATGACCTACAG 60.557 52.174 0.00 0.00 0.00 2.74
99 100 3.404869 TCTCCATCCATGACCTACAGT 57.595 47.619 0.00 0.00 0.00 3.55
100 101 3.300388 TCTCCATCCATGACCTACAGTC 58.700 50.000 0.00 0.00 46.51 3.51
101 102 3.052566 TCTCCATCCATGACCTACAGTCT 60.053 47.826 0.00 0.00 46.46 3.24
102 103 3.300388 TCCATCCATGACCTACAGTCTC 58.700 50.000 0.00 0.00 46.46 3.36
103 104 3.033909 CCATCCATGACCTACAGTCTCA 58.966 50.000 0.00 0.00 46.46 3.27
104 105 3.069300 CCATCCATGACCTACAGTCTCAG 59.931 52.174 0.00 0.00 46.46 3.35
105 106 2.103373 TCCATGACCTACAGTCTCAGC 58.897 52.381 0.00 0.00 46.46 4.26
106 107 1.827344 CCATGACCTACAGTCTCAGCA 59.173 52.381 0.00 0.00 46.46 4.41
107 108 2.159128 CCATGACCTACAGTCTCAGCAG 60.159 54.545 0.00 0.00 46.46 4.24
108 109 0.891373 TGACCTACAGTCTCAGCAGC 59.109 55.000 0.00 0.00 46.46 5.25
109 110 0.891373 GACCTACAGTCTCAGCAGCA 59.109 55.000 0.00 0.00 42.69 4.41
110 111 0.605589 ACCTACAGTCTCAGCAGCAC 59.394 55.000 0.00 0.00 0.00 4.40
111 112 0.894141 CCTACAGTCTCAGCAGCACT 59.106 55.000 0.00 0.00 0.00 4.40
112 113 1.135141 CCTACAGTCTCAGCAGCACTC 60.135 57.143 0.00 0.00 0.00 3.51
113 114 1.543358 CTACAGTCTCAGCAGCACTCA 59.457 52.381 0.00 0.00 0.00 3.41
114 115 0.975135 ACAGTCTCAGCAGCACTCAT 59.025 50.000 0.00 0.00 0.00 2.90
115 116 1.337917 ACAGTCTCAGCAGCACTCATG 60.338 52.381 0.00 0.00 0.00 3.07
125 126 4.604114 CACTCATGCAAGCTCCGA 57.396 55.556 0.00 0.00 0.00 4.55
126 127 2.845019 CACTCATGCAAGCTCCGAA 58.155 52.632 0.00 0.00 0.00 4.30
127 128 1.159285 CACTCATGCAAGCTCCGAAA 58.841 50.000 0.00 0.00 0.00 3.46
128 129 1.536766 CACTCATGCAAGCTCCGAAAA 59.463 47.619 0.00 0.00 0.00 2.29
129 130 2.030893 CACTCATGCAAGCTCCGAAAAA 60.031 45.455 0.00 0.00 0.00 1.94
130 131 2.030805 ACTCATGCAAGCTCCGAAAAAC 60.031 45.455 0.00 0.00 0.00 2.43
131 132 2.227388 CTCATGCAAGCTCCGAAAAACT 59.773 45.455 0.00 0.00 0.00 2.66
132 133 2.030893 TCATGCAAGCTCCGAAAAACTG 60.031 45.455 0.00 0.00 0.00 3.16
133 134 1.388547 TGCAAGCTCCGAAAAACTGT 58.611 45.000 0.00 0.00 0.00 3.55
134 135 1.065401 TGCAAGCTCCGAAAAACTGTG 59.935 47.619 0.00 0.00 0.00 3.66
135 136 1.333619 GCAAGCTCCGAAAAACTGTGA 59.666 47.619 0.00 0.00 0.00 3.58
136 137 2.030805 GCAAGCTCCGAAAAACTGTGAT 60.031 45.455 0.00 0.00 0.00 3.06
137 138 3.814945 CAAGCTCCGAAAAACTGTGATC 58.185 45.455 0.00 0.00 0.00 2.92
138 139 2.427506 AGCTCCGAAAAACTGTGATCC 58.572 47.619 0.00 0.00 0.00 3.36
139 140 2.039084 AGCTCCGAAAAACTGTGATCCT 59.961 45.455 0.00 0.00 0.00 3.24
140 141 2.160417 GCTCCGAAAAACTGTGATCCTG 59.840 50.000 0.00 0.00 0.00 3.86
141 142 2.744202 CTCCGAAAAACTGTGATCCTGG 59.256 50.000 0.00 0.00 0.00 4.45
142 143 1.200020 CCGAAAAACTGTGATCCTGGC 59.800 52.381 0.00 0.00 0.00 4.85
143 144 1.879380 CGAAAAACTGTGATCCTGGCA 59.121 47.619 0.00 0.00 0.00 4.92
144 145 2.293122 CGAAAAACTGTGATCCTGGCAA 59.707 45.455 0.00 0.00 0.00 4.52
145 146 3.057315 CGAAAAACTGTGATCCTGGCAAT 60.057 43.478 0.00 0.00 0.00 3.56
146 147 4.559300 CGAAAAACTGTGATCCTGGCAATT 60.559 41.667 0.00 0.00 0.00 2.32
147 148 4.525912 AAAACTGTGATCCTGGCAATTC 57.474 40.909 0.00 0.00 0.00 2.17
148 149 3.446442 AACTGTGATCCTGGCAATTCT 57.554 42.857 0.00 0.00 0.00 2.40
149 150 2.996631 ACTGTGATCCTGGCAATTCTC 58.003 47.619 0.00 0.00 0.00 2.87
150 151 2.575279 ACTGTGATCCTGGCAATTCTCT 59.425 45.455 0.00 0.00 0.00 3.10
151 152 2.943690 CTGTGATCCTGGCAATTCTCTG 59.056 50.000 0.00 0.00 0.00 3.35
152 153 2.295885 GTGATCCTGGCAATTCTCTGG 58.704 52.381 0.00 0.00 0.00 3.86
153 154 2.092753 GTGATCCTGGCAATTCTCTGGA 60.093 50.000 5.89 5.89 35.88 3.86
154 155 2.577563 TGATCCTGGCAATTCTCTGGAA 59.422 45.455 7.09 0.00 35.25 3.53
155 156 3.203710 TGATCCTGGCAATTCTCTGGAAT 59.796 43.478 7.09 0.00 43.26 3.01
156 157 4.413189 TGATCCTGGCAATTCTCTGGAATA 59.587 41.667 7.09 0.00 40.86 1.75
157 158 5.074102 TGATCCTGGCAATTCTCTGGAATAT 59.926 40.000 7.09 0.00 40.86 1.28
158 159 5.393068 TCCTGGCAATTCTCTGGAATATT 57.607 39.130 0.00 0.00 40.86 1.28
159 160 5.769835 TCCTGGCAATTCTCTGGAATATTT 58.230 37.500 0.00 0.00 40.86 1.40
160 161 5.595542 TCCTGGCAATTCTCTGGAATATTTG 59.404 40.000 0.00 0.00 40.86 2.32
161 162 5.221382 CCTGGCAATTCTCTGGAATATTTGG 60.221 44.000 0.00 0.00 40.86 3.28
162 163 5.517924 TGGCAATTCTCTGGAATATTTGGA 58.482 37.500 0.00 0.00 40.86 3.53
163 164 5.957168 TGGCAATTCTCTGGAATATTTGGAA 59.043 36.000 0.00 0.00 40.86 3.53
164 165 6.440010 TGGCAATTCTCTGGAATATTTGGAAA 59.560 34.615 0.00 0.00 40.86 3.13
165 166 7.038445 TGGCAATTCTCTGGAATATTTGGAAAA 60.038 33.333 0.00 0.00 40.86 2.29
166 167 7.493645 GGCAATTCTCTGGAATATTTGGAAAAG 59.506 37.037 0.00 0.00 40.86 2.27
167 168 8.253113 GCAATTCTCTGGAATATTTGGAAAAGA 58.747 33.333 0.00 0.00 40.86 2.52
170 171 7.944729 TCTCTGGAATATTTGGAAAAGAAGG 57.055 36.000 0.00 0.00 0.00 3.46
171 172 7.698912 TCTCTGGAATATTTGGAAAAGAAGGA 58.301 34.615 0.00 0.00 0.00 3.36
172 173 8.170061 TCTCTGGAATATTTGGAAAAGAAGGAA 58.830 33.333 0.00 0.00 0.00 3.36
173 174 8.899887 TCTGGAATATTTGGAAAAGAAGGAAT 57.100 30.769 0.00 0.00 0.00 3.01
174 175 8.752187 TCTGGAATATTTGGAAAAGAAGGAATG 58.248 33.333 0.00 0.00 0.00 2.67
175 176 7.330262 TGGAATATTTGGAAAAGAAGGAATGC 58.670 34.615 0.00 0.00 0.00 3.56
176 177 7.038445 TGGAATATTTGGAAAAGAAGGAATGCA 60.038 33.333 0.00 0.00 0.00 3.96
177 178 7.823799 GGAATATTTGGAAAAGAAGGAATGCAA 59.176 33.333 0.00 0.00 0.00 4.08
178 179 9.218440 GAATATTTGGAAAAGAAGGAATGCAAA 57.782 29.630 0.00 0.00 37.48 3.68
179 180 8.782339 ATATTTGGAAAAGAAGGAATGCAAAG 57.218 30.769 0.00 0.00 36.72 2.77
180 181 5.867903 TTGGAAAAGAAGGAATGCAAAGA 57.132 34.783 0.00 0.00 0.00 2.52
181 182 6.423776 TTGGAAAAGAAGGAATGCAAAGAT 57.576 33.333 0.00 0.00 0.00 2.40
182 183 6.423776 TGGAAAAGAAGGAATGCAAAGATT 57.576 33.333 0.00 0.00 0.00 2.40
183 184 6.829849 TGGAAAAGAAGGAATGCAAAGATTT 58.170 32.000 0.00 0.00 0.00 2.17
184 185 7.281841 TGGAAAAGAAGGAATGCAAAGATTTT 58.718 30.769 0.00 0.00 0.00 1.82
185 186 7.442062 TGGAAAAGAAGGAATGCAAAGATTTTC 59.558 33.333 0.00 2.16 34.81 2.29
186 187 7.442062 GGAAAAGAAGGAATGCAAAGATTTTCA 59.558 33.333 16.50 0.00 36.39 2.69
187 188 8.735692 AAAAGAAGGAATGCAAAGATTTTCAA 57.264 26.923 0.00 0.00 0.00 2.69
188 189 7.958053 AAGAAGGAATGCAAAGATTTTCAAG 57.042 32.000 0.00 0.00 0.00 3.02
189 190 5.930569 AGAAGGAATGCAAAGATTTTCAAGC 59.069 36.000 0.00 0.00 0.00 4.01
190 191 5.217978 AGGAATGCAAAGATTTTCAAGCA 57.782 34.783 0.00 0.00 36.34 3.91
191 192 5.613329 AGGAATGCAAAGATTTTCAAGCAA 58.387 33.333 0.00 0.00 35.45 3.91
192 193 5.699458 AGGAATGCAAAGATTTTCAAGCAAG 59.301 36.000 0.00 0.00 35.45 4.01
193 194 5.697633 GGAATGCAAAGATTTTCAAGCAAGA 59.302 36.000 0.00 0.00 35.45 3.02
194 195 6.203338 GGAATGCAAAGATTTTCAAGCAAGAA 59.797 34.615 0.00 0.00 35.45 2.52
195 196 6.780706 ATGCAAAGATTTTCAAGCAAGAAG 57.219 33.333 0.00 0.00 35.45 2.85
196 197 5.663456 TGCAAAGATTTTCAAGCAAGAAGT 58.337 33.333 0.00 0.00 0.00 3.01
197 198 5.521010 TGCAAAGATTTTCAAGCAAGAAGTG 59.479 36.000 0.00 0.00 0.00 3.16
198 199 5.050567 GCAAAGATTTTCAAGCAAGAAGTGG 60.051 40.000 0.00 0.00 0.00 4.00
199 200 6.275335 CAAAGATTTTCAAGCAAGAAGTGGA 58.725 36.000 0.00 0.00 0.00 4.02
200 201 6.469782 AAGATTTTCAAGCAAGAAGTGGAA 57.530 33.333 0.00 0.00 0.00 3.53
201 202 6.661304 AGATTTTCAAGCAAGAAGTGGAAT 57.339 33.333 0.00 0.00 0.00 3.01
202 203 6.685657 AGATTTTCAAGCAAGAAGTGGAATC 58.314 36.000 0.00 0.00 0.00 2.52
203 204 6.492772 AGATTTTCAAGCAAGAAGTGGAATCT 59.507 34.615 8.69 8.69 0.00 2.40
204 205 6.469782 TTTTCAAGCAAGAAGTGGAATCTT 57.530 33.333 0.00 0.00 37.62 2.40
205 206 6.469782 TTTCAAGCAAGAAGTGGAATCTTT 57.530 33.333 0.00 0.00 34.99 2.52
206 207 5.443185 TCAAGCAAGAAGTGGAATCTTTG 57.557 39.130 0.00 0.00 34.99 2.77
207 208 4.279169 TCAAGCAAGAAGTGGAATCTTTGG 59.721 41.667 0.00 0.00 34.99 3.28
208 209 3.160269 AGCAAGAAGTGGAATCTTTGGG 58.840 45.455 0.00 0.00 34.99 4.12
209 210 3.157087 GCAAGAAGTGGAATCTTTGGGA 58.843 45.455 0.00 0.00 34.99 4.37
210 211 3.573967 GCAAGAAGTGGAATCTTTGGGAA 59.426 43.478 0.00 0.00 34.99 3.97
211 212 4.559502 GCAAGAAGTGGAATCTTTGGGAAC 60.560 45.833 0.00 0.00 34.99 3.62
212 213 4.453480 AGAAGTGGAATCTTTGGGAACA 57.547 40.909 0.00 0.00 39.83 3.18
213 214 4.401925 AGAAGTGGAATCTTTGGGAACAG 58.598 43.478 0.00 0.00 44.54 3.16
214 215 3.884037 AGTGGAATCTTTGGGAACAGT 57.116 42.857 0.00 0.00 44.54 3.55
215 216 3.490348 AGTGGAATCTTTGGGAACAGTG 58.510 45.455 0.00 0.00 44.54 3.66
216 217 2.029918 GTGGAATCTTTGGGAACAGTGC 60.030 50.000 0.00 0.00 44.54 4.40
217 218 2.158475 TGGAATCTTTGGGAACAGTGCT 60.158 45.455 0.00 0.00 44.54 4.40
218 219 2.489722 GGAATCTTTGGGAACAGTGCTC 59.510 50.000 0.00 0.00 44.54 4.26
219 220 2.206576 ATCTTTGGGAACAGTGCTCC 57.793 50.000 3.79 3.79 44.54 4.70
220 221 0.250295 TCTTTGGGAACAGTGCTCCG 60.250 55.000 6.48 0.00 44.54 4.63
221 222 1.856265 CTTTGGGAACAGTGCTCCGC 61.856 60.000 6.48 0.95 44.54 5.54
222 223 3.842925 TTGGGAACAGTGCTCCGCC 62.843 63.158 6.48 0.00 44.54 6.13
224 225 4.681978 GGAACAGTGCTCCGCCGT 62.682 66.667 0.00 0.00 0.00 5.68
225 226 3.414700 GAACAGTGCTCCGCCGTG 61.415 66.667 0.00 0.00 0.00 4.94
239 240 3.055719 CGTGCGGCCCAAGACATT 61.056 61.111 0.00 0.00 0.00 2.71
240 241 2.625823 CGTGCGGCCCAAGACATTT 61.626 57.895 0.00 0.00 0.00 2.32
241 242 1.665442 GTGCGGCCCAAGACATTTT 59.335 52.632 0.00 0.00 0.00 1.82
242 243 0.033366 GTGCGGCCCAAGACATTTTT 59.967 50.000 0.00 0.00 0.00 1.94
243 244 0.316841 TGCGGCCCAAGACATTTTTC 59.683 50.000 0.00 0.00 0.00 2.29
244 245 0.603065 GCGGCCCAAGACATTTTTCT 59.397 50.000 0.00 0.00 0.00 2.52
245 246 1.000843 GCGGCCCAAGACATTTTTCTT 59.999 47.619 0.00 0.00 36.18 2.52
246 247 2.547855 GCGGCCCAAGACATTTTTCTTT 60.548 45.455 0.00 0.00 33.31 2.52
247 248 3.059166 CGGCCCAAGACATTTTTCTTTG 58.941 45.455 0.00 0.00 33.31 2.77
248 249 3.402110 GGCCCAAGACATTTTTCTTTGG 58.598 45.455 0.00 0.00 40.10 3.28
249 250 3.181455 GGCCCAAGACATTTTTCTTTGGT 60.181 43.478 0.00 0.00 39.56 3.67
250 251 4.058124 GCCCAAGACATTTTTCTTTGGTC 58.942 43.478 5.23 0.00 39.56 4.02
251 252 4.631131 CCCAAGACATTTTTCTTTGGTCC 58.369 43.478 1.43 0.00 34.88 4.46
252 253 4.100808 CCCAAGACATTTTTCTTTGGTCCA 59.899 41.667 0.00 0.00 34.88 4.02
253 254 5.291971 CCAAGACATTTTTCTTTGGTCCAG 58.708 41.667 0.00 0.00 33.31 3.86
254 255 5.163416 CCAAGACATTTTTCTTTGGTCCAGT 60.163 40.000 0.00 0.00 33.31 4.00
255 256 6.040391 CCAAGACATTTTTCTTTGGTCCAGTA 59.960 38.462 0.00 0.00 33.31 2.74
256 257 6.884280 AGACATTTTTCTTTGGTCCAGTAG 57.116 37.500 0.00 0.00 0.00 2.57
257 258 6.601332 AGACATTTTTCTTTGGTCCAGTAGA 58.399 36.000 0.00 0.00 0.00 2.59
258 259 7.234355 AGACATTTTTCTTTGGTCCAGTAGAT 58.766 34.615 6.61 0.00 0.00 1.98
259 260 7.175641 AGACATTTTTCTTTGGTCCAGTAGATG 59.824 37.037 6.61 5.28 0.00 2.90
260 261 6.777580 ACATTTTTCTTTGGTCCAGTAGATGT 59.222 34.615 6.61 5.76 0.00 3.06
261 262 6.633500 TTTTTCTTTGGTCCAGTAGATGTG 57.367 37.500 6.61 0.00 0.00 3.21
262 263 4.974645 TTCTTTGGTCCAGTAGATGTGT 57.025 40.909 6.61 0.00 0.00 3.72
263 264 6.428083 TTTCTTTGGTCCAGTAGATGTGTA 57.572 37.500 6.61 0.00 0.00 2.90
264 265 6.428083 TTCTTTGGTCCAGTAGATGTGTAA 57.572 37.500 6.61 0.00 0.00 2.41
265 266 6.428083 TCTTTGGTCCAGTAGATGTGTAAA 57.572 37.500 0.00 0.00 0.00 2.01
266 267 6.228258 TCTTTGGTCCAGTAGATGTGTAAAC 58.772 40.000 0.00 0.00 0.00 2.01
267 268 4.182693 TGGTCCAGTAGATGTGTAAACG 57.817 45.455 0.00 0.00 0.00 3.60
268 269 3.827876 TGGTCCAGTAGATGTGTAAACGA 59.172 43.478 0.00 0.00 0.00 3.85
269 270 4.082408 TGGTCCAGTAGATGTGTAAACGAG 60.082 45.833 0.00 0.00 0.00 4.18
270 271 4.421948 GTCCAGTAGATGTGTAAACGAGG 58.578 47.826 0.00 0.00 0.00 4.63
271 272 4.157289 GTCCAGTAGATGTGTAAACGAGGA 59.843 45.833 0.00 0.00 0.00 3.71
272 273 4.157289 TCCAGTAGATGTGTAAACGAGGAC 59.843 45.833 0.00 0.00 0.00 3.85
273 274 4.421948 CAGTAGATGTGTAAACGAGGACC 58.578 47.826 0.00 0.00 0.00 4.46
274 275 4.082408 CAGTAGATGTGTAAACGAGGACCA 60.082 45.833 0.00 0.00 0.00 4.02
275 276 3.594603 AGATGTGTAAACGAGGACCAG 57.405 47.619 0.00 0.00 0.00 4.00
276 277 3.162666 AGATGTGTAAACGAGGACCAGA 58.837 45.455 0.00 0.00 0.00 3.86
277 278 3.576982 AGATGTGTAAACGAGGACCAGAA 59.423 43.478 0.00 0.00 0.00 3.02
278 279 3.823281 TGTGTAAACGAGGACCAGAAA 57.177 42.857 0.00 0.00 0.00 2.52
279 280 3.460103 TGTGTAAACGAGGACCAGAAAC 58.540 45.455 0.00 0.00 0.00 2.78
280 281 3.118702 TGTGTAAACGAGGACCAGAAACA 60.119 43.478 0.00 0.00 0.00 2.83
281 282 3.872771 GTGTAAACGAGGACCAGAAACAA 59.127 43.478 0.00 0.00 0.00 2.83
282 283 4.333372 GTGTAAACGAGGACCAGAAACAAA 59.667 41.667 0.00 0.00 0.00 2.83
283 284 5.008316 GTGTAAACGAGGACCAGAAACAAAT 59.992 40.000 0.00 0.00 0.00 2.32
284 285 4.830826 AAACGAGGACCAGAAACAAATC 57.169 40.909 0.00 0.00 0.00 2.17
285 286 2.779506 ACGAGGACCAGAAACAAATCC 58.220 47.619 0.00 0.00 0.00 3.01
286 287 2.372172 ACGAGGACCAGAAACAAATCCT 59.628 45.455 0.00 0.00 42.62 3.24
287 288 2.744202 CGAGGACCAGAAACAAATCCTG 59.256 50.000 0.00 0.00 39.96 3.86
288 289 3.557054 CGAGGACCAGAAACAAATCCTGA 60.557 47.826 0.00 0.00 39.96 3.86
289 290 4.593956 GAGGACCAGAAACAAATCCTGAT 58.406 43.478 0.00 0.00 39.96 2.90
290 291 5.003096 AGGACCAGAAACAAATCCTGATT 57.997 39.130 0.00 0.00 38.40 2.57
291 292 4.768968 AGGACCAGAAACAAATCCTGATTG 59.231 41.667 0.00 0.00 38.40 2.67
292 293 4.766891 GGACCAGAAACAAATCCTGATTGA 59.233 41.667 0.00 0.00 0.00 2.57
293 294 5.335976 GGACCAGAAACAAATCCTGATTGAC 60.336 44.000 0.00 0.00 0.00 3.18
294 295 4.524328 ACCAGAAACAAATCCTGATTGACC 59.476 41.667 0.00 0.00 0.00 4.02
295 296 4.379813 CCAGAAACAAATCCTGATTGACCG 60.380 45.833 0.00 0.00 0.00 4.79
296 297 3.758554 AGAAACAAATCCTGATTGACCGG 59.241 43.478 0.00 0.00 0.00 5.28
297 298 2.128771 ACAAATCCTGATTGACCGGG 57.871 50.000 6.32 0.00 0.00 5.73
298 299 1.340991 ACAAATCCTGATTGACCGGGG 60.341 52.381 6.32 0.00 33.36 5.73
299 300 0.258774 AAATCCTGATTGACCGGGGG 59.741 55.000 6.32 0.00 33.36 5.40
300 301 0.623324 AATCCTGATTGACCGGGGGA 60.623 55.000 6.32 1.78 33.36 4.81
301 302 0.401979 ATCCTGATTGACCGGGGGAT 60.402 55.000 6.32 4.19 33.36 3.85
302 303 1.054406 TCCTGATTGACCGGGGGATC 61.054 60.000 6.32 6.33 33.36 3.36
303 304 1.344953 CCTGATTGACCGGGGGATCA 61.345 60.000 6.32 10.84 0.00 2.92
304 305 0.767375 CTGATTGACCGGGGGATCAT 59.233 55.000 6.32 0.00 0.00 2.45
305 306 0.473755 TGATTGACCGGGGGATCATG 59.526 55.000 6.32 0.00 0.00 3.07
306 307 0.890996 GATTGACCGGGGGATCATGC 60.891 60.000 6.32 0.00 0.00 4.06
307 308 1.355718 ATTGACCGGGGGATCATGCT 61.356 55.000 6.32 0.00 0.00 3.79
308 309 2.111878 GACCGGGGGATCATGCTG 59.888 66.667 6.32 0.00 0.00 4.41
309 310 2.692368 ACCGGGGGATCATGCTGT 60.692 61.111 6.32 0.00 0.00 4.40
310 311 2.111878 CCGGGGGATCATGCTGTC 59.888 66.667 0.00 0.00 0.00 3.51
311 312 2.111878 CGGGGGATCATGCTGTCC 59.888 66.667 0.00 3.75 0.00 4.02
314 315 2.111878 GGGATCATGCTGTCCCGG 59.888 66.667 12.88 0.00 44.30 5.73
315 316 2.592861 GGATCATGCTGTCCCGGC 60.593 66.667 0.00 0.00 36.10 6.13
316 317 2.507944 GATCATGCTGTCCCGGCT 59.492 61.111 0.00 0.00 36.58 5.52
317 318 1.748403 GATCATGCTGTCCCGGCTA 59.252 57.895 0.00 0.00 36.58 3.93
318 319 0.320247 GATCATGCTGTCCCGGCTAG 60.320 60.000 0.00 0.00 36.58 3.42
319 320 0.760567 ATCATGCTGTCCCGGCTAGA 60.761 55.000 0.00 0.00 36.58 2.43
320 321 0.760567 TCATGCTGTCCCGGCTAGAT 60.761 55.000 0.00 0.00 36.58 1.98
321 322 0.602106 CATGCTGTCCCGGCTAGATG 60.602 60.000 0.00 0.00 36.58 2.90
322 323 1.050988 ATGCTGTCCCGGCTAGATGT 61.051 55.000 0.00 0.00 36.58 3.06
323 324 0.396556 TGCTGTCCCGGCTAGATGTA 60.397 55.000 0.00 0.00 36.58 2.29
324 325 0.315568 GCTGTCCCGGCTAGATGTAG 59.684 60.000 0.00 0.00 32.24 2.74
357 358 8.429237 TTTTCTTCTTCTTCCTCTATCACTCT 57.571 34.615 0.00 0.00 0.00 3.24
358 359 7.403312 TTCTTCTTCTTCCTCTATCACTCTG 57.597 40.000 0.00 0.00 0.00 3.35
359 360 6.726379 TCTTCTTCTTCCTCTATCACTCTGA 58.274 40.000 0.00 0.00 0.00 3.27
360 361 6.601613 TCTTCTTCTTCCTCTATCACTCTGAC 59.398 42.308 0.00 0.00 0.00 3.51
361 362 5.821097 TCTTCTTCCTCTATCACTCTGACA 58.179 41.667 0.00 0.00 0.00 3.58
362 363 6.430864 TCTTCTTCCTCTATCACTCTGACAT 58.569 40.000 0.00 0.00 0.00 3.06
363 364 6.894654 TCTTCTTCCTCTATCACTCTGACATT 59.105 38.462 0.00 0.00 0.00 2.71
364 365 6.707440 TCTTCCTCTATCACTCTGACATTC 57.293 41.667 0.00 0.00 0.00 2.67
365 366 6.430864 TCTTCCTCTATCACTCTGACATTCT 58.569 40.000 0.00 0.00 0.00 2.40
366 367 6.894654 TCTTCCTCTATCACTCTGACATTCTT 59.105 38.462 0.00 0.00 0.00 2.52
367 368 6.462552 TCCTCTATCACTCTGACATTCTTG 57.537 41.667 0.00 0.00 0.00 3.02
368 369 5.954752 TCCTCTATCACTCTGACATTCTTGT 59.045 40.000 0.00 0.00 39.32 3.16
369 370 7.119387 TCCTCTATCACTCTGACATTCTTGTA 58.881 38.462 0.00 0.00 35.79 2.41
370 371 7.615757 TCCTCTATCACTCTGACATTCTTGTAA 59.384 37.037 0.00 0.00 35.79 2.41
371 372 8.253810 CCTCTATCACTCTGACATTCTTGTAAA 58.746 37.037 0.00 0.00 35.79 2.01
372 373 9.814899 CTCTATCACTCTGACATTCTTGTAAAT 57.185 33.333 0.00 0.00 35.79 1.40
376 377 8.988064 TCACTCTGACATTCTTGTAAATACTC 57.012 34.615 0.00 0.00 35.79 2.59
377 378 8.807118 TCACTCTGACATTCTTGTAAATACTCT 58.193 33.333 0.00 0.00 35.79 3.24
378 379 9.081997 CACTCTGACATTCTTGTAAATACTCTC 57.918 37.037 0.00 0.00 35.79 3.20
379 380 9.030452 ACTCTGACATTCTTGTAAATACTCTCT 57.970 33.333 0.00 0.00 35.79 3.10
380 381 9.299963 CTCTGACATTCTTGTAAATACTCTCTG 57.700 37.037 0.00 0.00 35.79 3.35
381 382 8.807118 TCTGACATTCTTGTAAATACTCTCTGT 58.193 33.333 0.00 0.00 35.79 3.41
382 383 9.429359 CTGACATTCTTGTAAATACTCTCTGTT 57.571 33.333 0.00 0.00 35.79 3.16
392 393 9.841295 TGTAAATACTCTCTGTTAAACCAAAGT 57.159 29.630 0.00 0.00 0.00 2.66
410 411 9.981114 AACCAAAGTTAATAAAATGAGTTCAGG 57.019 29.630 0.00 0.00 33.27 3.86
411 412 8.088365 ACCAAAGTTAATAAAATGAGTTCAGGC 58.912 33.333 0.00 0.00 0.00 4.85
412 413 8.306761 CCAAAGTTAATAAAATGAGTTCAGGCT 58.693 33.333 0.00 0.00 0.00 4.58
413 414 9.132521 CAAAGTTAATAAAATGAGTTCAGGCTG 57.867 33.333 8.58 8.58 0.00 4.85
414 415 7.396540 AGTTAATAAAATGAGTTCAGGCTGG 57.603 36.000 15.73 0.00 0.00 4.85
415 416 4.725790 AATAAAATGAGTTCAGGCTGGC 57.274 40.909 15.73 8.24 0.00 4.85
416 417 2.299326 AAAATGAGTTCAGGCTGGCT 57.701 45.000 15.73 13.14 0.00 4.75
417 418 2.299326 AAATGAGTTCAGGCTGGCTT 57.701 45.000 15.73 0.00 0.00 4.35
418 419 2.299326 AATGAGTTCAGGCTGGCTTT 57.701 45.000 15.73 3.28 0.00 3.51
419 420 1.542492 ATGAGTTCAGGCTGGCTTTG 58.458 50.000 15.73 0.00 0.00 2.77
420 421 1.174712 TGAGTTCAGGCTGGCTTTGC 61.175 55.000 15.73 2.96 0.00 3.68
431 432 3.053896 GCTTTGCCCGCCGTAGTT 61.054 61.111 0.00 0.00 0.00 2.24
432 433 3.035576 GCTTTGCCCGCCGTAGTTC 62.036 63.158 0.00 0.00 0.00 3.01
433 434 2.358984 TTTGCCCGCCGTAGTTCC 60.359 61.111 0.00 0.00 0.00 3.62
434 435 3.905437 TTTGCCCGCCGTAGTTCCC 62.905 63.158 0.00 0.00 0.00 3.97
436 437 3.149648 GCCCGCCGTAGTTCCCTA 61.150 66.667 0.00 0.00 0.00 3.53
437 438 2.724273 GCCCGCCGTAGTTCCCTAA 61.724 63.158 0.00 0.00 0.00 2.69
438 439 1.899617 CCCGCCGTAGTTCCCTAAA 59.100 57.895 0.00 0.00 0.00 1.85
439 440 0.249955 CCCGCCGTAGTTCCCTAAAA 59.750 55.000 0.00 0.00 0.00 1.52
440 441 1.338960 CCCGCCGTAGTTCCCTAAAAA 60.339 52.381 0.00 0.00 0.00 1.94
472 473 6.629128 CATAATGTAACCCTGTCATTTTGCA 58.371 36.000 0.00 0.00 34.35 4.08
517 518 6.964934 TCTCGCAAAAAGAAAAAGAACAGTAC 59.035 34.615 0.00 0.00 0.00 2.73
600 609 4.649088 AAAAGAAAGAAAACCCGACCTG 57.351 40.909 0.00 0.00 0.00 4.00
601 610 2.271944 AGAAAGAAAACCCGACCTGG 57.728 50.000 0.00 0.00 37.55 4.45
602 611 1.772453 AGAAAGAAAACCCGACCTGGA 59.228 47.619 0.00 0.00 42.00 3.86
649 658 0.463833 GGGAGGCCCAGTACGATTTG 60.464 60.000 0.00 0.00 44.65 2.32
728 737 0.613777 CTTTTACCGCCCACCTCTCT 59.386 55.000 0.00 0.00 0.00 3.10
729 738 0.611714 TTTTACCGCCCACCTCTCTC 59.388 55.000 0.00 0.00 0.00 3.20
968 979 3.432326 GCACCGAATCTCAAACCCTATCT 60.432 47.826 0.00 0.00 0.00 1.98
969 980 4.770795 CACCGAATCTCAAACCCTATCTT 58.229 43.478 0.00 0.00 0.00 2.40
1361 1378 1.299926 GCACTATGGAGGTACGGCG 60.300 63.158 4.80 4.80 0.00 6.46
1363 1380 2.338984 CTATGGAGGTACGGCGCC 59.661 66.667 19.07 19.07 0.00 6.53
1431 1448 3.672503 GCTGGGGTTGGGTGGGAT 61.673 66.667 0.00 0.00 0.00 3.85
1460 1477 6.484288 TGGTCTGATGTCTAATCATTGGTTT 58.516 36.000 0.00 0.00 0.00 3.27
1465 1482 6.244654 TGATGTCTAATCATTGGTTTGTCCA 58.755 36.000 0.00 0.00 45.60 4.02
1524 1541 0.029567 CAGACTACATCGAGGCGGTC 59.970 60.000 12.85 12.85 0.00 4.79
1728 1745 1.359459 CTTCGTAAGCGCAACCTCCC 61.359 60.000 11.47 0.00 38.14 4.30
1730 1747 2.047560 GTAAGCGCAACCTCCCGT 60.048 61.111 11.47 0.00 0.00 5.28
1791 1808 3.625897 GGGTTGGCTTTGGGGTGC 61.626 66.667 0.00 0.00 0.00 5.01
1793 1810 2.574018 GGTTGGCTTTGGGGTGCTC 61.574 63.158 0.00 0.00 0.00 4.26
1855 1872 3.055819 ACTTCTGCTACATCACGGACAAT 60.056 43.478 0.00 0.00 0.00 2.71
1976 1993 5.425217 TGTCATACTGTCACTGACCCAATAT 59.575 40.000 6.72 0.00 38.79 1.28
1979 1996 6.823182 TCATACTGTCACTGACCCAATATTTG 59.177 38.462 6.72 0.00 0.00 2.32
1990 2007 7.446625 ACTGACCCAATATTTGATAATCTCTGC 59.553 37.037 0.00 0.00 0.00 4.26
2052 2083 2.678336 CCTCACTAATTTCAGGCGGTTC 59.322 50.000 0.00 0.00 0.00 3.62
2310 2352 5.532406 TGCTTCATCACTTTTTCTTGCTAGT 59.468 36.000 0.00 0.00 0.00 2.57
2595 2642 5.648092 GGTATGCTCAACTCCAACAGTTATT 59.352 40.000 0.00 0.00 44.14 1.40
2610 2657 9.313118 CCAACAGTTATTTAATATTCCTTTGGC 57.687 33.333 0.00 0.00 0.00 4.52
2769 2816 5.524281 GCTCCACTGTAAAGCTAATAACTCC 59.476 44.000 6.39 0.00 33.23 3.85
2826 2873 3.567478 ACAGTTTCAGAGCAGGTTCTT 57.433 42.857 0.00 0.00 0.00 2.52
3176 3291 7.812690 AGCTTGCATGAATAATCATACTTGA 57.187 32.000 3.33 0.00 44.53 3.02
3346 3461 5.890334 ACTGGTTATAAATTTGATGGCACG 58.110 37.500 0.00 0.00 0.00 5.34
3361 3476 6.318628 TGATGGCACGTTAAACATCATTTAC 58.681 36.000 13.86 0.00 43.23 2.01
3383 3498 8.514330 TTACTGAGGTTCAAAACACATTTACT 57.486 30.769 0.00 0.00 0.00 2.24
3388 3503 4.675114 GGTTCAAAACACATTTACTGAGCG 59.325 41.667 0.00 0.00 0.00 5.03
3442 3557 6.056236 GGTTCTTGGTTTTCTTCAGTCTACT 58.944 40.000 0.00 0.00 0.00 2.57
3443 3558 6.017852 GGTTCTTGGTTTTCTTCAGTCTACTG 60.018 42.308 3.64 3.64 45.08 2.74
3465 3580 7.530010 ACTGTGCAAAGTTATGCTTATTGTAG 58.470 34.615 2.82 0.00 46.54 2.74
3509 3624 5.667539 AGTGCTGTATAAGACACTGTCAT 57.332 39.130 11.80 1.98 39.93 3.06
3590 3711 2.565834 GGAGTACTTGTGAGGCACCTTA 59.434 50.000 0.00 0.00 32.73 2.69
3591 3712 3.007614 GGAGTACTTGTGAGGCACCTTAA 59.992 47.826 0.00 0.00 32.73 1.85
3592 3713 4.323562 GGAGTACTTGTGAGGCACCTTAAT 60.324 45.833 0.00 0.00 32.73 1.40
3593 3714 5.242795 AGTACTTGTGAGGCACCTTAATT 57.757 39.130 0.00 0.00 32.73 1.40
3594 3715 5.246307 AGTACTTGTGAGGCACCTTAATTC 58.754 41.667 0.00 0.00 32.73 2.17
3595 3716 4.373156 ACTTGTGAGGCACCTTAATTCT 57.627 40.909 0.00 0.00 32.73 2.40
3606 3727 5.348164 GCACCTTAATTCTTTTGTGTGTGT 58.652 37.500 0.00 0.00 0.00 3.72
3617 3738 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3618 3739 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
3619 3740 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
3620 3741 1.377856 TGTGTGTGTGTGTGTGGGG 60.378 57.895 0.00 0.00 0.00 4.96
3621 3742 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
3667 4122 1.130561 GCAACTGATGTAGCCGAAACC 59.869 52.381 0.00 0.00 0.00 3.27
3717 4179 6.611381 TGCTAATGAATGTGCAAGTAAACTC 58.389 36.000 0.00 0.00 32.12 3.01
3720 4182 2.225491 TGAATGTGCAAGTAAACTCCGC 59.775 45.455 0.00 0.00 0.00 5.54
3721 4183 1.165270 ATGTGCAAGTAAACTCCGCC 58.835 50.000 0.00 0.00 0.00 6.13
3722 4184 0.107831 TGTGCAAGTAAACTCCGCCT 59.892 50.000 0.00 0.00 0.00 5.52
3724 4186 2.027561 TGTGCAAGTAAACTCCGCCTAT 60.028 45.455 0.00 0.00 0.00 2.57
3725 4187 2.351726 GTGCAAGTAAACTCCGCCTATG 59.648 50.000 0.00 0.00 0.00 2.23
3726 4188 2.027561 TGCAAGTAAACTCCGCCTATGT 60.028 45.455 0.00 0.00 0.00 2.29
3727 4189 3.007635 GCAAGTAAACTCCGCCTATGTT 58.992 45.455 0.00 0.00 0.00 2.71
3728 4190 3.181510 GCAAGTAAACTCCGCCTATGTTG 60.182 47.826 0.00 0.00 0.00 3.33
3729 4191 3.975168 AGTAAACTCCGCCTATGTTGT 57.025 42.857 0.00 0.00 0.00 3.32
3731 4193 3.514309 AGTAAACTCCGCCTATGTTGTCT 59.486 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.065851 TGAGCAGTGCAACAACATGTG 59.934 47.619 19.20 0.00 41.43 3.21
2 3 2.121786 GTTGAGCAGTGCAACAACATG 58.878 47.619 32.84 0.00 43.77 3.21
3 4 1.268692 CGTTGAGCAGTGCAACAACAT 60.269 47.619 34.46 12.98 44.37 2.71
4 5 0.098552 CGTTGAGCAGTGCAACAACA 59.901 50.000 34.46 19.59 44.37 3.33
5 6 0.592247 CCGTTGAGCAGTGCAACAAC 60.592 55.000 30.45 30.45 44.37 3.32
6 7 1.726865 CCGTTGAGCAGTGCAACAA 59.273 52.632 19.20 19.02 44.37 2.83
7 8 2.833533 GCCGTTGAGCAGTGCAACA 61.834 57.895 19.20 14.07 44.37 3.33
8 9 2.050985 GCCGTTGAGCAGTGCAAC 60.051 61.111 19.20 12.81 41.57 4.17
9 10 1.785041 GAAGCCGTTGAGCAGTGCAA 61.785 55.000 19.20 1.51 34.23 4.08
10 11 2.203195 AAGCCGTTGAGCAGTGCA 60.203 55.556 19.20 0.00 34.23 4.57
11 12 2.558313 GAAGCCGTTGAGCAGTGC 59.442 61.111 7.13 7.13 34.23 4.40
12 13 2.671177 CGGAAGCCGTTGAGCAGTG 61.671 63.158 0.00 0.00 42.73 3.66
13 14 2.357517 CGGAAGCCGTTGAGCAGT 60.358 61.111 0.00 0.00 42.73 4.40
29 30 2.030562 ACAGTTGACCGGGCTTCG 59.969 61.111 9.82 0.00 38.88 3.79
30 31 1.966451 CCACAGTTGACCGGGCTTC 60.966 63.158 9.82 0.52 0.00 3.86
31 32 1.779061 ATCCACAGTTGACCGGGCTT 61.779 55.000 9.82 0.00 0.00 4.35
32 33 1.779061 AATCCACAGTTGACCGGGCT 61.779 55.000 9.82 0.00 0.00 5.19
33 34 1.303317 AATCCACAGTTGACCGGGC 60.303 57.895 6.32 1.57 0.00 6.13
34 35 0.676782 GGAATCCACAGTTGACCGGG 60.677 60.000 6.32 0.00 0.00 5.73
35 36 0.324943 AGGAATCCACAGTTGACCGG 59.675 55.000 0.00 0.00 0.00 5.28
36 37 2.185004 AAGGAATCCACAGTTGACCG 57.815 50.000 0.61 0.00 0.00 4.79
37 38 3.610911 CCTAAGGAATCCACAGTTGACC 58.389 50.000 0.61 0.00 0.00 4.02
38 39 3.010420 GCCTAAGGAATCCACAGTTGAC 58.990 50.000 0.61 0.00 0.00 3.18
39 40 2.642311 TGCCTAAGGAATCCACAGTTGA 59.358 45.455 0.61 0.00 0.00 3.18
40 41 3.071874 TGCCTAAGGAATCCACAGTTG 57.928 47.619 0.61 0.00 0.00 3.16
41 42 4.322057 AATGCCTAAGGAATCCACAGTT 57.678 40.909 0.61 0.00 0.00 3.16
42 43 5.450818 TTAATGCCTAAGGAATCCACAGT 57.549 39.130 0.61 0.00 0.00 3.55
43 44 5.474876 GGATTAATGCCTAAGGAATCCACAG 59.525 44.000 0.61 0.00 43.36 3.66
44 45 5.134339 AGGATTAATGCCTAAGGAATCCACA 59.866 40.000 13.01 0.00 45.35 4.17
45 46 5.474876 CAGGATTAATGCCTAAGGAATCCAC 59.525 44.000 13.01 0.00 45.35 4.02
46 47 5.634118 CAGGATTAATGCCTAAGGAATCCA 58.366 41.667 13.01 0.00 45.35 3.41
47 48 4.460731 GCAGGATTAATGCCTAAGGAATCC 59.539 45.833 2.98 4.15 43.94 3.01
48 49 5.182760 CAGCAGGATTAATGCCTAAGGAATC 59.817 44.000 2.98 0.00 44.97 2.52
49 50 5.075493 CAGCAGGATTAATGCCTAAGGAAT 58.925 41.667 2.98 0.00 44.97 3.01
50 51 4.165950 TCAGCAGGATTAATGCCTAAGGAA 59.834 41.667 2.98 0.00 44.97 3.36
51 52 3.716353 TCAGCAGGATTAATGCCTAAGGA 59.284 43.478 2.98 1.46 44.97 3.36
52 53 4.090761 TCAGCAGGATTAATGCCTAAGG 57.909 45.455 2.98 0.00 44.97 2.69
53 54 5.564259 GCAATCAGCAGGATTAATGCCTAAG 60.564 44.000 2.98 0.00 44.41 2.18
54 55 4.279169 GCAATCAGCAGGATTAATGCCTAA 59.721 41.667 2.98 0.00 44.41 2.69
55 56 3.822735 GCAATCAGCAGGATTAATGCCTA 59.177 43.478 2.98 0.00 44.41 3.93
56 57 2.626743 GCAATCAGCAGGATTAATGCCT 59.373 45.455 2.98 2.30 44.41 4.75
57 58 3.022607 GCAATCAGCAGGATTAATGCC 57.977 47.619 2.98 0.00 44.41 4.40
72 73 2.818432 GGTCATGGATGGAGATGCAATC 59.182 50.000 0.00 0.00 46.04 2.67
73 74 2.445905 AGGTCATGGATGGAGATGCAAT 59.554 45.455 0.00 0.00 33.04 3.56
74 75 1.848388 AGGTCATGGATGGAGATGCAA 59.152 47.619 0.00 0.00 33.04 4.08
75 76 1.514983 AGGTCATGGATGGAGATGCA 58.485 50.000 0.00 0.00 33.95 3.96
76 77 2.369860 TGTAGGTCATGGATGGAGATGC 59.630 50.000 0.00 0.00 0.00 3.91
77 78 3.645212 ACTGTAGGTCATGGATGGAGATG 59.355 47.826 0.00 0.00 0.00 2.90
78 79 3.900601 GACTGTAGGTCATGGATGGAGAT 59.099 47.826 0.00 0.00 43.94 2.75
79 80 3.052566 AGACTGTAGGTCATGGATGGAGA 60.053 47.826 0.00 0.00 46.72 3.71
80 81 3.303938 AGACTGTAGGTCATGGATGGAG 58.696 50.000 0.00 0.00 46.72 3.86
81 82 3.300388 GAGACTGTAGGTCATGGATGGA 58.700 50.000 0.00 0.00 46.72 3.41
82 83 3.033909 TGAGACTGTAGGTCATGGATGG 58.966 50.000 0.00 0.00 46.72 3.51
83 84 3.492309 GCTGAGACTGTAGGTCATGGATG 60.492 52.174 0.00 0.00 46.72 3.51
84 85 2.697751 GCTGAGACTGTAGGTCATGGAT 59.302 50.000 0.00 0.00 46.72 3.41
85 86 2.103373 GCTGAGACTGTAGGTCATGGA 58.897 52.381 0.00 0.00 46.72 3.41
86 87 1.827344 TGCTGAGACTGTAGGTCATGG 59.173 52.381 0.00 0.00 46.72 3.66
87 88 2.738000 GCTGCTGAGACTGTAGGTCATG 60.738 54.545 0.00 0.00 46.72 3.07
88 89 1.480137 GCTGCTGAGACTGTAGGTCAT 59.520 52.381 0.00 0.00 46.72 3.06
89 90 0.891373 GCTGCTGAGACTGTAGGTCA 59.109 55.000 0.00 0.00 46.72 4.02
90 91 0.891373 TGCTGCTGAGACTGTAGGTC 59.109 55.000 0.00 0.00 44.80 3.85
91 92 0.605589 GTGCTGCTGAGACTGTAGGT 59.394 55.000 0.00 0.00 0.00 3.08
92 93 0.894141 AGTGCTGCTGAGACTGTAGG 59.106 55.000 0.00 0.00 0.00 3.18
93 94 1.543358 TGAGTGCTGCTGAGACTGTAG 59.457 52.381 0.00 0.00 0.00 2.74
94 95 1.620822 TGAGTGCTGCTGAGACTGTA 58.379 50.000 0.00 0.00 0.00 2.74
95 96 0.975135 ATGAGTGCTGCTGAGACTGT 59.025 50.000 0.00 0.00 0.00 3.55
96 97 1.360820 CATGAGTGCTGCTGAGACTG 58.639 55.000 0.00 0.00 0.00 3.51
97 98 3.836762 CATGAGTGCTGCTGAGACT 57.163 52.632 0.00 0.00 0.00 3.24
108 109 1.159285 TTTCGGAGCTTGCATGAGTG 58.841 50.000 3.33 0.00 0.00 3.51
109 110 1.896220 TTTTCGGAGCTTGCATGAGT 58.104 45.000 3.33 0.00 0.00 3.41
110 111 2.227388 AGTTTTTCGGAGCTTGCATGAG 59.773 45.455 3.33 0.00 0.00 2.90
111 112 2.030893 CAGTTTTTCGGAGCTTGCATGA 60.031 45.455 3.33 0.00 0.00 3.07
112 113 2.287788 ACAGTTTTTCGGAGCTTGCATG 60.288 45.455 0.00 0.00 0.00 4.06
113 114 1.956477 ACAGTTTTTCGGAGCTTGCAT 59.044 42.857 0.00 0.00 0.00 3.96
114 115 1.065401 CACAGTTTTTCGGAGCTTGCA 59.935 47.619 0.00 0.00 0.00 4.08
115 116 1.333619 TCACAGTTTTTCGGAGCTTGC 59.666 47.619 0.00 0.00 0.00 4.01
116 117 3.365364 GGATCACAGTTTTTCGGAGCTTG 60.365 47.826 0.00 0.00 0.00 4.01
117 118 2.814336 GGATCACAGTTTTTCGGAGCTT 59.186 45.455 0.00 0.00 0.00 3.74
118 119 2.039084 AGGATCACAGTTTTTCGGAGCT 59.961 45.455 0.00 0.00 0.00 4.09
119 120 2.160417 CAGGATCACAGTTTTTCGGAGC 59.840 50.000 0.00 0.00 0.00 4.70
120 121 2.744202 CCAGGATCACAGTTTTTCGGAG 59.256 50.000 0.00 0.00 0.00 4.63
121 122 2.778299 CCAGGATCACAGTTTTTCGGA 58.222 47.619 0.00 0.00 0.00 4.55
122 123 1.200020 GCCAGGATCACAGTTTTTCGG 59.800 52.381 0.00 0.00 0.00 4.30
123 124 1.879380 TGCCAGGATCACAGTTTTTCG 59.121 47.619 0.00 0.00 0.00 3.46
124 125 4.525912 ATTGCCAGGATCACAGTTTTTC 57.474 40.909 0.00 0.00 0.00 2.29
125 126 4.590222 AGAATTGCCAGGATCACAGTTTTT 59.410 37.500 0.00 0.00 0.00 1.94
126 127 4.154942 AGAATTGCCAGGATCACAGTTTT 58.845 39.130 0.00 0.00 0.00 2.43
127 128 3.760684 GAGAATTGCCAGGATCACAGTTT 59.239 43.478 0.00 0.00 0.00 2.66
128 129 3.009916 AGAGAATTGCCAGGATCACAGTT 59.990 43.478 0.00 0.00 0.00 3.16
129 130 2.575279 AGAGAATTGCCAGGATCACAGT 59.425 45.455 0.00 0.00 0.00 3.55
130 131 2.943690 CAGAGAATTGCCAGGATCACAG 59.056 50.000 0.00 0.00 0.00 3.66
131 132 2.356432 CCAGAGAATTGCCAGGATCACA 60.356 50.000 0.00 0.00 0.00 3.58
132 133 2.092753 TCCAGAGAATTGCCAGGATCAC 60.093 50.000 0.00 0.00 0.00 3.06
133 134 2.199208 TCCAGAGAATTGCCAGGATCA 58.801 47.619 0.00 0.00 0.00 2.92
134 135 3.287867 TTCCAGAGAATTGCCAGGATC 57.712 47.619 0.00 0.00 0.00 3.36
135 136 3.967467 ATTCCAGAGAATTGCCAGGAT 57.033 42.857 0.00 0.00 39.83 3.24
136 137 5.393068 AATATTCCAGAGAATTGCCAGGA 57.607 39.130 0.00 0.00 39.83 3.86
137 138 5.221382 CCAAATATTCCAGAGAATTGCCAGG 60.221 44.000 0.00 0.00 39.83 4.45
138 139 5.595542 TCCAAATATTCCAGAGAATTGCCAG 59.404 40.000 0.00 0.00 39.83 4.85
139 140 5.517924 TCCAAATATTCCAGAGAATTGCCA 58.482 37.500 0.00 0.00 39.83 4.92
140 141 6.469782 TTCCAAATATTCCAGAGAATTGCC 57.530 37.500 0.00 0.00 39.83 4.52
141 142 8.253113 TCTTTTCCAAATATTCCAGAGAATTGC 58.747 33.333 0.00 0.00 39.83 3.56
144 145 8.975295 CCTTCTTTTCCAAATATTCCAGAGAAT 58.025 33.333 0.00 0.00 44.95 2.40
145 146 8.170061 TCCTTCTTTTCCAAATATTCCAGAGAA 58.830 33.333 0.00 0.00 36.15 2.87
146 147 7.698912 TCCTTCTTTTCCAAATATTCCAGAGA 58.301 34.615 0.00 0.00 0.00 3.10
147 148 7.944729 TCCTTCTTTTCCAAATATTCCAGAG 57.055 36.000 0.00 0.00 0.00 3.35
148 149 8.752187 CATTCCTTCTTTTCCAAATATTCCAGA 58.248 33.333 0.00 0.00 0.00 3.86
149 150 7.493645 GCATTCCTTCTTTTCCAAATATTCCAG 59.506 37.037 0.00 0.00 0.00 3.86
150 151 7.038445 TGCATTCCTTCTTTTCCAAATATTCCA 60.038 33.333 0.00 0.00 0.00 3.53
151 152 7.330262 TGCATTCCTTCTTTTCCAAATATTCC 58.670 34.615 0.00 0.00 0.00 3.01
152 153 8.776376 TTGCATTCCTTCTTTTCCAAATATTC 57.224 30.769 0.00 0.00 0.00 1.75
153 154 9.223099 CTTTGCATTCCTTCTTTTCCAAATATT 57.777 29.630 0.00 0.00 0.00 1.28
154 155 8.596293 TCTTTGCATTCCTTCTTTTCCAAATAT 58.404 29.630 0.00 0.00 0.00 1.28
155 156 7.961351 TCTTTGCATTCCTTCTTTTCCAAATA 58.039 30.769 0.00 0.00 0.00 1.40
156 157 6.829849 TCTTTGCATTCCTTCTTTTCCAAAT 58.170 32.000 0.00 0.00 0.00 2.32
157 158 6.232581 TCTTTGCATTCCTTCTTTTCCAAA 57.767 33.333 0.00 0.00 0.00 3.28
158 159 5.867903 TCTTTGCATTCCTTCTTTTCCAA 57.132 34.783 0.00 0.00 0.00 3.53
159 160 6.423776 AATCTTTGCATTCCTTCTTTTCCA 57.576 33.333 0.00 0.00 0.00 3.53
160 161 7.442062 TGAAAATCTTTGCATTCCTTCTTTTCC 59.558 33.333 0.00 0.00 32.07 3.13
161 162 8.369218 TGAAAATCTTTGCATTCCTTCTTTTC 57.631 30.769 0.00 0.00 33.12 2.29
162 163 8.735692 TTGAAAATCTTTGCATTCCTTCTTTT 57.264 26.923 0.00 0.00 0.00 2.27
163 164 7.041576 GCTTGAAAATCTTTGCATTCCTTCTTT 60.042 33.333 0.00 0.00 0.00 2.52
164 165 6.426025 GCTTGAAAATCTTTGCATTCCTTCTT 59.574 34.615 0.00 0.00 0.00 2.52
165 166 5.930569 GCTTGAAAATCTTTGCATTCCTTCT 59.069 36.000 0.00 0.00 0.00 2.85
166 167 5.697633 TGCTTGAAAATCTTTGCATTCCTTC 59.302 36.000 0.00 0.00 0.00 3.46
167 168 5.613329 TGCTTGAAAATCTTTGCATTCCTT 58.387 33.333 0.00 0.00 0.00 3.36
168 169 5.217978 TGCTTGAAAATCTTTGCATTCCT 57.782 34.783 0.00 0.00 0.00 3.36
169 170 5.697633 TCTTGCTTGAAAATCTTTGCATTCC 59.302 36.000 0.00 0.00 0.00 3.01
170 171 6.774354 TCTTGCTTGAAAATCTTTGCATTC 57.226 33.333 0.00 0.00 0.00 2.67
171 172 6.764560 ACTTCTTGCTTGAAAATCTTTGCATT 59.235 30.769 0.00 0.00 0.00 3.56
172 173 6.202188 CACTTCTTGCTTGAAAATCTTTGCAT 59.798 34.615 0.00 0.00 0.00 3.96
173 174 5.521010 CACTTCTTGCTTGAAAATCTTTGCA 59.479 36.000 0.00 0.00 0.00 4.08
174 175 5.050567 CCACTTCTTGCTTGAAAATCTTTGC 60.051 40.000 0.00 0.00 0.00 3.68
175 176 6.275335 TCCACTTCTTGCTTGAAAATCTTTG 58.725 36.000 0.00 0.00 0.00 2.77
176 177 6.469782 TCCACTTCTTGCTTGAAAATCTTT 57.530 33.333 0.00 0.00 0.00 2.52
177 178 6.469782 TTCCACTTCTTGCTTGAAAATCTT 57.530 33.333 0.00 0.00 0.00 2.40
178 179 6.492772 AGATTCCACTTCTTGCTTGAAAATCT 59.507 34.615 9.20 9.20 30.90 2.40
179 180 6.685657 AGATTCCACTTCTTGCTTGAAAATC 58.314 36.000 0.00 0.00 0.00 2.17
180 181 6.661304 AGATTCCACTTCTTGCTTGAAAAT 57.339 33.333 0.00 0.00 0.00 1.82
181 182 6.469782 AAGATTCCACTTCTTGCTTGAAAA 57.530 33.333 0.00 0.00 32.30 2.29
182 183 6.275335 CAAAGATTCCACTTCTTGCTTGAAA 58.725 36.000 0.00 0.00 33.79 2.69
183 184 5.221303 CCAAAGATTCCACTTCTTGCTTGAA 60.221 40.000 0.00 0.00 33.79 2.69
184 185 4.279169 CCAAAGATTCCACTTCTTGCTTGA 59.721 41.667 0.00 0.00 33.79 3.02
185 186 4.553323 CCAAAGATTCCACTTCTTGCTTG 58.447 43.478 0.00 0.00 33.79 4.01
186 187 3.575687 CCCAAAGATTCCACTTCTTGCTT 59.424 43.478 0.00 0.00 33.79 3.91
187 188 3.160269 CCCAAAGATTCCACTTCTTGCT 58.840 45.455 0.00 0.00 33.79 3.91
188 189 3.157087 TCCCAAAGATTCCACTTCTTGC 58.843 45.455 0.00 0.00 33.79 4.01
189 190 4.584325 TGTTCCCAAAGATTCCACTTCTTG 59.416 41.667 0.00 0.00 33.79 3.02
190 191 4.803452 TGTTCCCAAAGATTCCACTTCTT 58.197 39.130 0.00 0.00 34.95 2.52
191 192 4.141158 ACTGTTCCCAAAGATTCCACTTCT 60.141 41.667 0.00 0.00 0.00 2.85
192 193 4.022849 CACTGTTCCCAAAGATTCCACTTC 60.023 45.833 0.00 0.00 0.00 3.01
193 194 3.891366 CACTGTTCCCAAAGATTCCACTT 59.109 43.478 0.00 0.00 0.00 3.16
194 195 3.490348 CACTGTTCCCAAAGATTCCACT 58.510 45.455 0.00 0.00 0.00 4.00
195 196 2.029918 GCACTGTTCCCAAAGATTCCAC 60.030 50.000 0.00 0.00 0.00 4.02
196 197 2.158475 AGCACTGTTCCCAAAGATTCCA 60.158 45.455 0.00 0.00 0.00 3.53
197 198 2.489722 GAGCACTGTTCCCAAAGATTCC 59.510 50.000 0.00 0.00 0.00 3.01
198 199 2.489722 GGAGCACTGTTCCCAAAGATTC 59.510 50.000 0.33 0.00 0.00 2.52
199 200 2.519013 GGAGCACTGTTCCCAAAGATT 58.481 47.619 0.33 0.00 0.00 2.40
200 201 1.611673 CGGAGCACTGTTCCCAAAGAT 60.612 52.381 6.35 0.00 0.00 2.40
201 202 0.250295 CGGAGCACTGTTCCCAAAGA 60.250 55.000 6.35 0.00 0.00 2.52
202 203 2.247790 CGGAGCACTGTTCCCAAAG 58.752 57.895 6.35 0.00 0.00 2.77
203 204 4.473643 CGGAGCACTGTTCCCAAA 57.526 55.556 6.35 0.00 0.00 3.28
222 223 2.141122 AAAATGTCTTGGGCCGCACG 62.141 55.000 0.00 0.00 0.00 5.34
223 224 0.033366 AAAAATGTCTTGGGCCGCAC 59.967 50.000 0.00 0.00 0.00 5.34
224 225 0.316841 GAAAAATGTCTTGGGCCGCA 59.683 50.000 0.00 0.00 0.00 5.69
225 226 0.603065 AGAAAAATGTCTTGGGCCGC 59.397 50.000 0.00 0.00 0.00 6.53
226 227 3.059166 CAAAGAAAAATGTCTTGGGCCG 58.941 45.455 0.00 0.00 37.90 6.13
227 228 3.402110 CCAAAGAAAAATGTCTTGGGCC 58.598 45.455 0.00 0.00 40.97 5.80
230 231 5.163416 ACTGGACCAAAGAAAAATGTCTTGG 60.163 40.000 0.00 0.00 37.90 3.61
231 232 5.906073 ACTGGACCAAAGAAAAATGTCTTG 58.094 37.500 0.00 0.00 37.90 3.02
232 233 7.060421 TCTACTGGACCAAAGAAAAATGTCTT 58.940 34.615 0.00 0.00 39.60 3.01
233 234 6.601332 TCTACTGGACCAAAGAAAAATGTCT 58.399 36.000 0.00 0.00 0.00 3.41
234 235 6.877611 TCTACTGGACCAAAGAAAAATGTC 57.122 37.500 0.00 0.00 0.00 3.06
235 236 6.777580 ACATCTACTGGACCAAAGAAAAATGT 59.222 34.615 9.64 7.24 0.00 2.71
236 237 7.086376 CACATCTACTGGACCAAAGAAAAATG 58.914 38.462 9.64 6.74 0.00 2.32
237 238 6.777580 ACACATCTACTGGACCAAAGAAAAAT 59.222 34.615 9.64 0.00 0.00 1.82
238 239 6.126409 ACACATCTACTGGACCAAAGAAAAA 58.874 36.000 9.64 0.00 0.00 1.94
239 240 5.690865 ACACATCTACTGGACCAAAGAAAA 58.309 37.500 9.64 0.00 0.00 2.29
240 241 5.304686 ACACATCTACTGGACCAAAGAAA 57.695 39.130 9.64 0.00 0.00 2.52
241 242 4.974645 ACACATCTACTGGACCAAAGAA 57.025 40.909 9.64 0.00 0.00 2.52
242 243 6.228258 GTTTACACATCTACTGGACCAAAGA 58.772 40.000 8.31 8.31 0.00 2.52
243 244 5.120208 CGTTTACACATCTACTGGACCAAAG 59.880 44.000 0.00 0.00 0.00 2.77
244 245 4.992319 CGTTTACACATCTACTGGACCAAA 59.008 41.667 0.00 0.00 0.00 3.28
245 246 4.281435 TCGTTTACACATCTACTGGACCAA 59.719 41.667 0.00 0.00 0.00 3.67
246 247 3.827876 TCGTTTACACATCTACTGGACCA 59.172 43.478 0.00 0.00 0.00 4.02
247 248 4.421948 CTCGTTTACACATCTACTGGACC 58.578 47.826 0.00 0.00 0.00 4.46
248 249 4.157289 TCCTCGTTTACACATCTACTGGAC 59.843 45.833 0.00 0.00 0.00 4.02
249 250 4.157289 GTCCTCGTTTACACATCTACTGGA 59.843 45.833 0.00 0.00 0.00 3.86
250 251 4.421948 GTCCTCGTTTACACATCTACTGG 58.578 47.826 0.00 0.00 0.00 4.00
251 252 4.082408 TGGTCCTCGTTTACACATCTACTG 60.082 45.833 0.00 0.00 0.00 2.74
252 253 4.084287 TGGTCCTCGTTTACACATCTACT 58.916 43.478 0.00 0.00 0.00 2.57
253 254 4.157289 TCTGGTCCTCGTTTACACATCTAC 59.843 45.833 0.00 0.00 0.00 2.59
254 255 4.338012 TCTGGTCCTCGTTTACACATCTA 58.662 43.478 0.00 0.00 0.00 1.98
255 256 3.162666 TCTGGTCCTCGTTTACACATCT 58.837 45.455 0.00 0.00 0.00 2.90
256 257 3.587797 TCTGGTCCTCGTTTACACATC 57.412 47.619 0.00 0.00 0.00 3.06
257 258 4.062991 GTTTCTGGTCCTCGTTTACACAT 58.937 43.478 0.00 0.00 0.00 3.21
258 259 3.118702 TGTTTCTGGTCCTCGTTTACACA 60.119 43.478 0.00 0.00 0.00 3.72
259 260 3.460103 TGTTTCTGGTCCTCGTTTACAC 58.540 45.455 0.00 0.00 0.00 2.90
260 261 3.823281 TGTTTCTGGTCCTCGTTTACA 57.177 42.857 0.00 0.00 0.00 2.41
261 262 5.334646 GGATTTGTTTCTGGTCCTCGTTTAC 60.335 44.000 0.00 0.00 0.00 2.01
262 263 4.758165 GGATTTGTTTCTGGTCCTCGTTTA 59.242 41.667 0.00 0.00 0.00 2.01
263 264 3.568430 GGATTTGTTTCTGGTCCTCGTTT 59.432 43.478 0.00 0.00 0.00 3.60
264 265 3.146847 GGATTTGTTTCTGGTCCTCGTT 58.853 45.455 0.00 0.00 0.00 3.85
265 266 2.372172 AGGATTTGTTTCTGGTCCTCGT 59.628 45.455 0.00 0.00 34.26 4.18
266 267 2.744202 CAGGATTTGTTTCTGGTCCTCG 59.256 50.000 0.00 0.00 37.20 4.63
267 268 4.021102 TCAGGATTTGTTTCTGGTCCTC 57.979 45.455 0.00 0.00 37.20 3.71
268 269 4.664688 ATCAGGATTTGTTTCTGGTCCT 57.335 40.909 0.00 0.00 39.82 3.85
269 270 4.766891 TCAATCAGGATTTGTTTCTGGTCC 59.233 41.667 0.00 0.00 0.00 4.46
270 271 5.335976 GGTCAATCAGGATTTGTTTCTGGTC 60.336 44.000 0.00 0.00 0.00 4.02
271 272 4.524328 GGTCAATCAGGATTTGTTTCTGGT 59.476 41.667 0.00 0.00 0.00 4.00
272 273 4.379813 CGGTCAATCAGGATTTGTTTCTGG 60.380 45.833 0.00 0.00 0.00 3.86
273 274 4.379813 CCGGTCAATCAGGATTTGTTTCTG 60.380 45.833 0.00 0.00 33.18 3.02
274 275 3.758554 CCGGTCAATCAGGATTTGTTTCT 59.241 43.478 0.00 0.00 33.18 2.52
275 276 3.119495 CCCGGTCAATCAGGATTTGTTTC 60.119 47.826 0.00 0.00 33.18 2.78
276 277 2.825532 CCCGGTCAATCAGGATTTGTTT 59.174 45.455 0.00 0.00 33.18 2.83
277 278 2.446435 CCCGGTCAATCAGGATTTGTT 58.554 47.619 0.00 0.00 33.18 2.83
278 279 1.340991 CCCCGGTCAATCAGGATTTGT 60.341 52.381 0.00 0.00 33.18 2.83
279 280 1.392589 CCCCGGTCAATCAGGATTTG 58.607 55.000 0.00 0.00 33.18 2.32
280 281 0.258774 CCCCCGGTCAATCAGGATTT 59.741 55.000 0.00 0.00 33.18 2.17
281 282 0.623324 TCCCCCGGTCAATCAGGATT 60.623 55.000 0.00 0.00 33.18 3.01
282 283 0.401979 ATCCCCCGGTCAATCAGGAT 60.402 55.000 0.00 0.00 33.18 3.24
283 284 1.004230 ATCCCCCGGTCAATCAGGA 59.996 57.895 0.00 0.00 33.18 3.86
284 285 1.344953 TGATCCCCCGGTCAATCAGG 61.345 60.000 0.00 0.00 0.00 3.86
285 286 0.767375 ATGATCCCCCGGTCAATCAG 59.233 55.000 13.30 0.00 32.09 2.90
286 287 0.473755 CATGATCCCCCGGTCAATCA 59.526 55.000 11.03 11.03 33.04 2.57
287 288 0.890996 GCATGATCCCCCGGTCAATC 60.891 60.000 0.00 0.14 0.00 2.67
288 289 1.151450 GCATGATCCCCCGGTCAAT 59.849 57.895 0.00 0.00 0.00 2.57
289 290 2.000701 AGCATGATCCCCCGGTCAA 61.001 57.895 0.00 0.00 0.00 3.18
290 291 2.366837 AGCATGATCCCCCGGTCA 60.367 61.111 0.00 0.00 0.00 4.02
291 292 2.111878 CAGCATGATCCCCCGGTC 59.888 66.667 0.00 0.00 39.69 4.79
292 293 2.692368 ACAGCATGATCCCCCGGT 60.692 61.111 0.00 0.00 39.69 5.28
293 294 2.111878 GACAGCATGATCCCCCGG 59.888 66.667 0.00 0.00 39.69 5.73
294 295 2.111878 GGACAGCATGATCCCCCG 59.888 66.667 0.00 0.00 39.69 5.73
295 296 2.517919 GGGACAGCATGATCCCCC 59.482 66.667 15.92 9.56 45.14 5.40
296 297 2.111878 CGGGACAGCATGATCCCC 59.888 66.667 19.27 14.01 46.88 4.81
297 298 2.111878 CCGGGACAGCATGATCCC 59.888 66.667 16.54 16.54 46.43 3.85
298 299 1.758440 TAGCCGGGACAGCATGATCC 61.758 60.000 2.18 0.00 39.69 3.36
299 300 0.320247 CTAGCCGGGACAGCATGATC 60.320 60.000 2.18 0.00 39.69 2.92
300 301 0.760567 TCTAGCCGGGACAGCATGAT 60.761 55.000 2.18 0.00 39.69 2.45
301 302 0.760567 ATCTAGCCGGGACAGCATGA 60.761 55.000 2.18 0.00 39.69 3.07
302 303 0.602106 CATCTAGCCGGGACAGCATG 60.602 60.000 2.18 0.00 46.00 4.06
303 304 1.050988 ACATCTAGCCGGGACAGCAT 61.051 55.000 2.18 0.00 0.00 3.79
304 305 0.396556 TACATCTAGCCGGGACAGCA 60.397 55.000 2.18 0.00 0.00 4.41
305 306 0.315568 CTACATCTAGCCGGGACAGC 59.684 60.000 2.18 0.00 0.00 4.40
306 307 0.315568 GCTACATCTAGCCGGGACAG 59.684 60.000 2.18 0.00 39.79 3.51
307 308 0.396556 TGCTACATCTAGCCGGGACA 60.397 55.000 2.18 0.00 44.45 4.02
308 309 0.969894 ATGCTACATCTAGCCGGGAC 59.030 55.000 2.18 0.00 44.45 4.46
309 310 2.225041 ACTATGCTACATCTAGCCGGGA 60.225 50.000 2.18 0.00 44.45 5.14
310 311 2.171840 ACTATGCTACATCTAGCCGGG 58.828 52.381 2.18 0.00 44.45 5.73
311 312 3.944055 AACTATGCTACATCTAGCCGG 57.056 47.619 0.00 0.00 44.45 6.13
331 332 8.875168 AGAGTGATAGAGGAAGAAGAAGAAAAA 58.125 33.333 0.00 0.00 0.00 1.94
332 333 8.310382 CAGAGTGATAGAGGAAGAAGAAGAAAA 58.690 37.037 0.00 0.00 0.00 2.29
333 334 7.671819 TCAGAGTGATAGAGGAAGAAGAAGAAA 59.328 37.037 0.00 0.00 0.00 2.52
334 335 7.122055 GTCAGAGTGATAGAGGAAGAAGAAGAA 59.878 40.741 0.00 0.00 0.00 2.52
335 336 6.601613 GTCAGAGTGATAGAGGAAGAAGAAGA 59.398 42.308 0.00 0.00 0.00 2.87
336 337 6.376864 TGTCAGAGTGATAGAGGAAGAAGAAG 59.623 42.308 0.00 0.00 0.00 2.85
337 338 6.249192 TGTCAGAGTGATAGAGGAAGAAGAA 58.751 40.000 0.00 0.00 0.00 2.52
338 339 5.821097 TGTCAGAGTGATAGAGGAAGAAGA 58.179 41.667 0.00 0.00 0.00 2.87
339 340 6.713762 ATGTCAGAGTGATAGAGGAAGAAG 57.286 41.667 0.00 0.00 0.00 2.85
340 341 6.894654 AGAATGTCAGAGTGATAGAGGAAGAA 59.105 38.462 0.00 0.00 0.00 2.52
341 342 6.430864 AGAATGTCAGAGTGATAGAGGAAGA 58.569 40.000 0.00 0.00 0.00 2.87
342 343 6.713762 AGAATGTCAGAGTGATAGAGGAAG 57.286 41.667 0.00 0.00 0.00 3.46
343 344 6.438741 ACAAGAATGTCAGAGTGATAGAGGAA 59.561 38.462 0.00 0.00 33.41 3.36
344 345 5.954752 ACAAGAATGTCAGAGTGATAGAGGA 59.045 40.000 0.00 0.00 33.41 3.71
345 346 6.219417 ACAAGAATGTCAGAGTGATAGAGG 57.781 41.667 0.00 0.00 33.41 3.69
346 347 9.814899 ATTTACAAGAATGTCAGAGTGATAGAG 57.185 33.333 0.00 0.00 41.05 2.43
350 351 9.593134 GAGTATTTACAAGAATGTCAGAGTGAT 57.407 33.333 0.00 0.00 41.05 3.06
351 352 8.807118 AGAGTATTTACAAGAATGTCAGAGTGA 58.193 33.333 0.00 0.00 41.05 3.41
352 353 8.994429 AGAGTATTTACAAGAATGTCAGAGTG 57.006 34.615 0.00 0.00 41.05 3.51
353 354 9.030452 AGAGAGTATTTACAAGAATGTCAGAGT 57.970 33.333 0.00 0.00 41.05 3.24
354 355 9.299963 CAGAGAGTATTTACAAGAATGTCAGAG 57.700 37.037 0.00 0.00 41.05 3.35
355 356 8.807118 ACAGAGAGTATTTACAAGAATGTCAGA 58.193 33.333 0.00 0.00 41.05 3.27
356 357 8.994429 ACAGAGAGTATTTACAAGAATGTCAG 57.006 34.615 0.00 0.00 41.05 3.51
366 367 9.841295 ACTTTGGTTTAACAGAGAGTATTTACA 57.159 29.630 0.00 0.00 0.00 2.41
384 385 9.981114 CCTGAACTCATTTTATTAACTTTGGTT 57.019 29.630 0.00 0.00 39.26 3.67
385 386 8.088365 GCCTGAACTCATTTTATTAACTTTGGT 58.912 33.333 0.00 0.00 0.00 3.67
386 387 8.306761 AGCCTGAACTCATTTTATTAACTTTGG 58.693 33.333 0.00 0.00 0.00 3.28
387 388 9.132521 CAGCCTGAACTCATTTTATTAACTTTG 57.867 33.333 0.00 0.00 0.00 2.77
388 389 8.306761 CCAGCCTGAACTCATTTTATTAACTTT 58.693 33.333 0.00 0.00 0.00 2.66
389 390 7.577616 GCCAGCCTGAACTCATTTTATTAACTT 60.578 37.037 0.00 0.00 0.00 2.66
390 391 6.127619 GCCAGCCTGAACTCATTTTATTAACT 60.128 38.462 0.00 0.00 0.00 2.24
391 392 6.036470 GCCAGCCTGAACTCATTTTATTAAC 58.964 40.000 0.00 0.00 0.00 2.01
392 393 5.951747 AGCCAGCCTGAACTCATTTTATTAA 59.048 36.000 0.00 0.00 0.00 1.40
393 394 5.509498 AGCCAGCCTGAACTCATTTTATTA 58.491 37.500 0.00 0.00 0.00 0.98
394 395 4.347607 AGCCAGCCTGAACTCATTTTATT 58.652 39.130 0.00 0.00 0.00 1.40
395 396 3.973425 AGCCAGCCTGAACTCATTTTAT 58.027 40.909 0.00 0.00 0.00 1.40
396 397 3.439857 AGCCAGCCTGAACTCATTTTA 57.560 42.857 0.00 0.00 0.00 1.52
397 398 2.299326 AGCCAGCCTGAACTCATTTT 57.701 45.000 0.00 0.00 0.00 1.82
398 399 2.298163 CAAAGCCAGCCTGAACTCATTT 59.702 45.455 0.00 0.00 0.00 2.32
399 400 1.891150 CAAAGCCAGCCTGAACTCATT 59.109 47.619 0.00 0.00 0.00 2.57
400 401 1.542492 CAAAGCCAGCCTGAACTCAT 58.458 50.000 0.00 0.00 0.00 2.90
401 402 1.174712 GCAAAGCCAGCCTGAACTCA 61.175 55.000 0.00 0.00 0.00 3.41
402 403 1.583477 GCAAAGCCAGCCTGAACTC 59.417 57.895 0.00 0.00 0.00 3.01
403 404 3.769201 GCAAAGCCAGCCTGAACT 58.231 55.556 0.00 0.00 0.00 3.01
414 415 3.035576 GAACTACGGCGGGCAAAGC 62.036 63.158 13.24 0.00 0.00 3.51
415 416 2.396157 GGAACTACGGCGGGCAAAG 61.396 63.158 13.24 2.84 0.00 2.77
416 417 2.358984 GGAACTACGGCGGGCAAA 60.359 61.111 13.24 0.00 0.00 3.68
417 418 4.397832 GGGAACTACGGCGGGCAA 62.398 66.667 13.24 0.00 0.00 4.52
418 419 3.961225 TAGGGAACTACGGCGGGCA 62.961 63.158 13.24 0.00 43.67 5.36
419 420 2.242797 TTTAGGGAACTACGGCGGGC 62.243 60.000 13.24 0.00 44.30 6.13
420 421 0.249955 TTTTAGGGAACTACGGCGGG 59.750 55.000 13.24 6.18 44.30 6.13
421 422 2.097680 TTTTTAGGGAACTACGGCGG 57.902 50.000 13.24 0.00 44.30 6.13
437 438 7.124147 ACAGGGTTACATTATGCTAGCATTTTT 59.876 33.333 33.74 18.18 37.82 1.94
438 439 6.607198 ACAGGGTTACATTATGCTAGCATTTT 59.393 34.615 33.74 19.11 37.82 1.82
439 440 6.129179 ACAGGGTTACATTATGCTAGCATTT 58.871 36.000 33.74 19.46 37.82 2.32
440 441 5.694995 ACAGGGTTACATTATGCTAGCATT 58.305 37.500 33.74 18.98 37.82 3.56
441 442 5.163205 TGACAGGGTTACATTATGCTAGCAT 60.163 40.000 31.60 31.60 40.19 3.79
442 443 4.163268 TGACAGGGTTACATTATGCTAGCA 59.837 41.667 21.85 21.85 0.00 3.49
443 444 4.703897 TGACAGGGTTACATTATGCTAGC 58.296 43.478 8.10 8.10 0.00 3.42
444 445 7.807977 AAATGACAGGGTTACATTATGCTAG 57.192 36.000 0.00 0.00 34.48 3.42
445 446 7.416213 GCAAAATGACAGGGTTACATTATGCTA 60.416 37.037 0.00 0.00 34.48 3.49
446 447 6.627953 GCAAAATGACAGGGTTACATTATGCT 60.628 38.462 0.00 0.00 34.48 3.79
447 448 5.519927 GCAAAATGACAGGGTTACATTATGC 59.480 40.000 0.00 0.00 34.48 3.14
448 449 6.629128 TGCAAAATGACAGGGTTACATTATG 58.371 36.000 0.00 0.00 34.48 1.90
449 450 6.663093 TCTGCAAAATGACAGGGTTACATTAT 59.337 34.615 0.00 0.00 34.48 1.28
450 451 6.007076 TCTGCAAAATGACAGGGTTACATTA 58.993 36.000 0.00 0.00 34.48 1.90
451 452 4.832266 TCTGCAAAATGACAGGGTTACATT 59.168 37.500 0.00 0.00 36.07 2.71
452 453 4.406456 TCTGCAAAATGACAGGGTTACAT 58.594 39.130 0.00 0.00 34.57 2.29
453 454 3.826524 TCTGCAAAATGACAGGGTTACA 58.173 40.909 0.00 0.00 34.57 2.41
454 455 4.846779 TTCTGCAAAATGACAGGGTTAC 57.153 40.909 0.00 0.00 34.57 2.50
455 456 7.531857 TTTATTCTGCAAAATGACAGGGTTA 57.468 32.000 0.00 0.00 34.57 2.85
456 457 6.418057 TTTATTCTGCAAAATGACAGGGTT 57.582 33.333 0.00 0.00 34.57 4.11
457 458 6.418057 TTTTATTCTGCAAAATGACAGGGT 57.582 33.333 0.00 0.00 34.57 4.34
483 484 1.864711 CTTTTTGCGAGAGACCGTGAA 59.135 47.619 0.00 0.00 0.00 3.18
517 518 6.397831 TCGGTGTCATCGTTGTTAAAATAG 57.602 37.500 5.22 0.00 0.00 1.73
526 527 4.655440 TTGTATTTCGGTGTCATCGTTG 57.345 40.909 5.22 0.00 0.00 4.10
582 590 1.772453 TCCAGGTCGGGTTTTCTTTCT 59.228 47.619 0.00 0.00 34.36 2.52
583 591 2.152016 CTCCAGGTCGGGTTTTCTTTC 58.848 52.381 0.00 0.00 34.36 2.62
584 592 1.202891 CCTCCAGGTCGGGTTTTCTTT 60.203 52.381 0.00 0.00 34.36 2.52
585 593 0.400594 CCTCCAGGTCGGGTTTTCTT 59.599 55.000 0.00 0.00 34.36 2.52
586 594 0.473117 TCCTCCAGGTCGGGTTTTCT 60.473 55.000 0.00 0.00 36.34 2.52
597 606 0.109342 AAACAGCACACTCCTCCAGG 59.891 55.000 0.00 0.00 0.00 4.45
600 609 1.569479 GCGAAACAGCACACTCCTCC 61.569 60.000 0.00 0.00 37.05 4.30
601 610 1.862806 GCGAAACAGCACACTCCTC 59.137 57.895 0.00 0.00 37.05 3.71
602 611 1.956170 CGCGAAACAGCACACTCCT 60.956 57.895 0.00 0.00 36.85 3.69
632 641 0.463833 CCCAAATCGTACTGGGCCTC 60.464 60.000 4.53 0.00 45.80 4.70
956 966 0.393808 GGCGGCAAGATAGGGTTTGA 60.394 55.000 3.07 0.00 0.00 2.69
1294 1311 2.911143 CCCGCTGAGCTGGGTTAT 59.089 61.111 21.11 0.00 37.51 1.89
1361 1378 1.373059 GAGATCAGGAATCGGGGGC 59.627 63.158 0.00 0.00 39.55 5.80
1363 1380 1.356124 ATGGAGATCAGGAATCGGGG 58.644 55.000 0.00 0.00 39.55 5.73
1431 1448 4.270008 TGATTAGACATCAGACCAGTCGA 58.730 43.478 0.00 0.00 37.36 4.20
1460 1477 0.827089 CTGCACACCCCATTTGGACA 60.827 55.000 0.00 0.00 37.39 4.02
1465 1482 1.533753 CCACCTGCACACCCCATTT 60.534 57.895 0.00 0.00 0.00 2.32
1671 1688 2.993008 CCAAGGAGCTGCAGCCTA 59.007 61.111 34.39 0.00 43.38 3.93
1747 1764 7.588512 ACTCAATCCTCAAAATCTTTTCGAAG 58.411 34.615 0.00 0.00 0.00 3.79
1793 1810 1.002251 GATCTCCTCGTACTTCCTGCG 60.002 57.143 0.00 0.00 0.00 5.18
1954 1971 6.560003 AATATTGGGTCAGTGACAGTATGA 57.440 37.500 24.20 5.64 39.69 2.15
1979 1996 7.389053 ACGGAATCAAAATAGGCAGAGATTATC 59.611 37.037 0.00 0.00 0.00 1.75
1990 2007 6.816640 TCAGTTAGACACGGAATCAAAATAGG 59.183 38.462 0.00 0.00 0.00 2.57
2052 2083 1.280133 TCTTCTGGGCCAGATCTTGTG 59.720 52.381 35.34 20.02 40.39 3.33
2310 2352 1.347707 GTGTCTGGTCCAATGGTCAGA 59.652 52.381 18.43 18.43 34.17 3.27
2414 2459 4.379813 CCTGCAACAACATAATCACAGGAC 60.380 45.833 0.00 0.00 45.00 3.85
2595 2642 6.975772 GCATAACAACGCCAAAGGAATATTAA 59.024 34.615 0.00 0.00 0.00 1.40
2610 2657 5.918011 ACCAAACAATACAAGCATAACAACG 59.082 36.000 0.00 0.00 0.00 4.10
2742 2789 0.108329 TAGCTTTACAGTGGAGCGGC 60.108 55.000 0.00 0.00 41.19 6.53
2826 2873 5.046304 AGCTTCCAGCATTCTAACTTGTCTA 60.046 40.000 0.00 0.00 45.56 2.59
2974 3023 3.821033 AGACCAAGGCACATTGTTCTAAC 59.179 43.478 0.00 0.00 30.99 2.34
3346 3461 9.959749 TTTGAACCTCAGTAAATGATGTTTAAC 57.040 29.630 4.35 0.00 44.01 2.01
3361 3476 7.026631 TCAGTAAATGTGTTTTGAACCTCAG 57.973 36.000 0.00 0.00 0.00 3.35
3383 3498 4.398319 TCATCTGGTCTACATATCGCTCA 58.602 43.478 0.00 0.00 0.00 4.26
3442 3557 7.447374 ACTACAATAAGCATAACTTTGCACA 57.553 32.000 0.00 0.00 45.23 4.57
3443 3558 8.742554 AAACTACAATAAGCATAACTTTGCAC 57.257 30.769 0.00 0.00 45.23 4.57
3465 3580 9.118236 GCACTACTTCAGTAATCAATTGAAAAC 57.882 33.333 13.09 13.11 34.98 2.43
3509 3624 4.321899 GGTAAATGGAAAGCATGTTCAGCA 60.322 41.667 0.00 0.00 0.00 4.41
3563 3684 1.338200 CCTCACAAGTACTCCACTGGC 60.338 57.143 0.00 0.00 37.63 4.85
3590 3711 4.922692 CACACACACACACACAAAAGAATT 59.077 37.500 0.00 0.00 0.00 2.17
3591 3712 4.022416 ACACACACACACACACAAAAGAAT 60.022 37.500 0.00 0.00 0.00 2.40
3592 3713 3.316588 ACACACACACACACACAAAAGAA 59.683 39.130 0.00 0.00 0.00 2.52
3593 3714 2.881513 ACACACACACACACACAAAAGA 59.118 40.909 0.00 0.00 0.00 2.52
3594 3715 2.979151 CACACACACACACACACAAAAG 59.021 45.455 0.00 0.00 0.00 2.27
3595 3716 2.359214 ACACACACACACACACACAAAA 59.641 40.909 0.00 0.00 0.00 2.44
3622 3743 4.086457 TCAGAAAAGAATTAAGCACCCCC 58.914 43.478 0.00 0.00 0.00 5.40
3623 3744 5.394553 CCATCAGAAAAGAATTAAGCACCCC 60.395 44.000 0.00 0.00 0.00 4.95
3624 3745 5.654497 CCATCAGAAAAGAATTAAGCACCC 58.346 41.667 0.00 0.00 0.00 4.61
3625 3746 5.105063 GCCATCAGAAAAGAATTAAGCACC 58.895 41.667 0.00 0.00 0.00 5.01
3626 3747 5.713025 TGCCATCAGAAAAGAATTAAGCAC 58.287 37.500 0.00 0.00 0.00 4.40
3627 3748 5.981088 TGCCATCAGAAAAGAATTAAGCA 57.019 34.783 0.00 0.00 0.00 3.91
3628 3749 6.309737 CAGTTGCCATCAGAAAAGAATTAAGC 59.690 38.462 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.