Multiple sequence alignment - TraesCS5A01G063100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G063100 chr5A 100.000 2674 0 0 1 2674 68612322 68614995 0.000000e+00 4939.0
1 TraesCS5A01G063100 chr5A 88.596 114 11 2 2267 2379 68614532 68614644 1.290000e-28 137.0
2 TraesCS5A01G063100 chr5A 88.596 114 11 2 2211 2323 68614588 68614700 1.290000e-28 137.0
3 TraesCS5A01G063100 chr5D 87.609 1606 90 49 636 2194 73500482 73502025 0.000000e+00 1762.0
4 TraesCS5A01G063100 chr5D 87.559 426 38 9 2185 2607 73502144 73502557 1.860000e-131 479.0
5 TraesCS5A01G063100 chr5D 89.840 187 11 3 4 188 73500091 73500271 1.600000e-57 233.0
6 TraesCS5A01G063100 chr5D 90.291 103 9 1 2222 2323 73502229 73502331 1.670000e-27 134.0
7 TraesCS5A01G063100 chr5D 92.958 71 4 1 3 72 73500170 73500240 4.710000e-18 102.0
8 TraesCS5A01G063100 chr5B 87.402 1524 94 46 575 2058 79082552 79081087 0.000000e+00 1661.0
9 TraesCS5A01G063100 chr5B 95.161 186 8 1 4 188 79082866 79082681 2.600000e-75 292.0
10 TraesCS5A01G063100 chr3A 94.286 210 11 1 330 538 697028260 697028469 1.190000e-83 320.0
11 TraesCS5A01G063100 chr3A 94.581 203 11 0 336 538 746884415 746884617 5.560000e-82 315.0
12 TraesCS5A01G063100 chr7A 95.050 202 10 0 337 538 515976622 515976823 4.300000e-83 318.0
13 TraesCS5A01G063100 chr7A 94.554 202 11 0 337 538 250982952 250982751 2.000000e-81 313.0
14 TraesCS5A01G063100 chr7A 94.554 202 11 0 337 538 618665781 618665580 2.000000e-81 313.0
15 TraesCS5A01G063100 chr7A 85.401 137 19 1 1185 1320 191826939 191827075 9.980000e-30 141.0
16 TraesCS5A01G063100 chr7A 82.759 116 17 3 2324 2437 350545630 350545744 1.690000e-17 100.0
17 TraesCS5A01G063100 chr7A 82.301 113 17 3 2327 2437 328033895 328033784 7.880000e-16 95.3
18 TraesCS5A01G063100 chr3B 94.581 203 11 0 336 538 12174774 12174976 5.560000e-82 315.0
19 TraesCS5A01G063100 chr2A 94.146 205 12 0 334 538 101884505 101884709 2.000000e-81 313.0
20 TraesCS5A01G063100 chr2A 94.118 204 12 0 335 538 84977771 84977568 7.190000e-81 311.0
21 TraesCS5A01G063100 chr2A 83.621 116 16 3 2324 2437 432431125 432431011 3.640000e-19 106.0
22 TraesCS5A01G063100 chr6A 94.059 202 12 0 337 538 5356258 5356057 9.300000e-80 307.0
23 TraesCS5A01G063100 chr6A 87.805 205 25 0 334 538 160367341 160367545 9.570000e-60 241.0
24 TraesCS5A01G063100 chr7B 92.647 204 11 3 337 538 191501529 191501730 9.360000e-75 291.0
25 TraesCS5A01G063100 chr7B 86.260 131 17 1 1185 1314 154552774 154552904 9.980000e-30 141.0
26 TraesCS5A01G063100 chr4A 88.889 207 18 4 336 539 556015188 556014984 1.590000e-62 250.0
27 TraesCS5A01G063100 chr4A 83.019 106 15 3 2324 2427 496108594 496108698 2.830000e-15 93.5
28 TraesCS5A01G063100 chr7D 85.827 127 18 0 1185 1311 184857146 184857272 4.640000e-28 135.0
29 TraesCS5A01G063100 chr7D 77.612 201 27 12 386 572 631756607 631756803 3.640000e-19 106.0
30 TraesCS5A01G063100 chr1D 77.381 252 39 12 337 574 399066668 399066421 1.670000e-27 134.0
31 TraesCS5A01G063100 chr4B 84.733 131 19 1 1185 1314 144284932 144285062 2.160000e-26 130.0
32 TraesCS5A01G063100 chr3D 83.621 116 16 3 2324 2437 529836662 529836548 3.640000e-19 106.0
33 TraesCS5A01G063100 chr6B 85.714 91 11 2 2347 2436 521511758 521511669 7.880000e-16 95.3
34 TraesCS5A01G063100 chr1B 80.165 121 19 4 2324 2442 402352098 402352215 4.740000e-13 86.1
35 TraesCS5A01G063100 chr2D 94.286 35 1 1 541 575 638340636 638340603 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G063100 chr5A 68612322 68614995 2673 False 1737.666667 4939 92.397333 1 2674 3 chr5A.!!$F1 2673
1 TraesCS5A01G063100 chr5D 73500091 73502557 2466 False 542.000000 1762 89.651400 3 2607 5 chr5D.!!$F1 2604
2 TraesCS5A01G063100 chr5B 79081087 79082866 1779 True 976.500000 1661 91.281500 4 2058 2 chr5B.!!$R1 2054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 436 0.030101 CAACTGCGGCGGAAGAAAAA 59.97 50.0 17.15 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1880 0.036022 GGGCCTCATCTATGGAGTGC 59.964 60.0 0.84 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 43 4.035102 GGTGGGGTGAGGTGAGCC 62.035 72.222 0.00 0.00 0.00 4.70
67 70 0.519961 CGGTTTCCGGTGAACAATCC 59.480 55.000 19.80 7.55 44.15 3.01
126 130 2.134287 GGGGTGAGGCGAGCTGATA 61.134 63.158 0.00 0.00 0.00 2.15
188 192 1.529244 GCTTGGTGCCAACTCCACT 60.529 57.895 0.00 0.00 39.13 4.00
189 193 1.518903 GCTTGGTGCCAACTCCACTC 61.519 60.000 0.00 0.00 39.13 3.51
190 194 0.109342 CTTGGTGCCAACTCCACTCT 59.891 55.000 0.00 0.00 39.13 3.24
191 195 0.108585 TTGGTGCCAACTCCACTCTC 59.891 55.000 0.00 0.00 39.13 3.20
192 196 1.003233 GGTGCCAACTCCACTCTCC 60.003 63.158 0.00 0.00 33.78 3.71
193 197 1.754745 GTGCCAACTCCACTCTCCA 59.245 57.895 0.00 0.00 0.00 3.86
194 198 0.603975 GTGCCAACTCCACTCTCCAC 60.604 60.000 0.00 0.00 0.00 4.02
205 209 2.564504 CCACTCTCCACATGTCTCTTCA 59.435 50.000 0.00 0.00 0.00 3.02
209 213 3.500343 TCTCCACATGTCTCTTCACTGA 58.500 45.455 0.00 0.00 0.00 3.41
222 226 6.701841 GTCTCTTCACTGACATTTGAACTACA 59.298 38.462 0.00 0.00 33.75 2.74
223 227 7.224753 GTCTCTTCACTGACATTTGAACTACAA 59.775 37.037 0.00 0.00 33.78 2.41
224 228 7.933577 TCTCTTCACTGACATTTGAACTACAAT 59.066 33.333 0.00 0.00 38.36 2.71
225 229 8.450578 TCTTCACTGACATTTGAACTACAATT 57.549 30.769 0.00 0.00 38.36 2.32
227 231 8.854979 TTCACTGACATTTGAACTACAATTTG 57.145 30.769 0.00 0.00 38.36 2.32
228 232 7.995289 TCACTGACATTTGAACTACAATTTGT 58.005 30.769 7.30 7.30 38.36 2.83
229 233 8.465999 TCACTGACATTTGAACTACAATTTGTT 58.534 29.630 7.45 0.00 38.36 2.83
230 234 9.729023 CACTGACATTTGAACTACAATTTGTTA 57.271 29.630 7.45 0.00 38.36 2.41
231 235 9.950680 ACTGACATTTGAACTACAATTTGTTAG 57.049 29.630 7.45 6.02 40.32 2.34
239 243 8.161699 TGAACTACAATTTGTTAGAGAAACCC 57.838 34.615 7.45 0.00 37.27 4.11
240 244 7.996644 TGAACTACAATTTGTTAGAGAAACCCT 59.003 33.333 7.45 0.00 37.27 4.34
241 245 7.745620 ACTACAATTTGTTAGAGAAACCCTG 57.254 36.000 7.45 0.00 37.27 4.45
243 247 6.884280 ACAATTTGTTAGAGAAACCCTGAG 57.116 37.500 0.00 0.00 37.27 3.35
244 248 6.365520 ACAATTTGTTAGAGAAACCCTGAGT 58.634 36.000 0.00 0.00 37.27 3.41
245 249 6.833933 ACAATTTGTTAGAGAAACCCTGAGTT 59.166 34.615 0.00 0.00 41.81 3.01
246 250 6.884280 ATTTGTTAGAGAAACCCTGAGTTG 57.116 37.500 0.00 0.00 39.19 3.16
248 252 5.825593 TGTTAGAGAAACCCTGAGTTGAT 57.174 39.130 0.00 0.00 39.19 2.57
249 253 6.928348 TGTTAGAGAAACCCTGAGTTGATA 57.072 37.500 0.00 0.00 39.19 2.15
251 255 7.556844 TGTTAGAGAAACCCTGAGTTGATATC 58.443 38.462 0.00 0.00 39.19 1.63
252 256 7.400339 TGTTAGAGAAACCCTGAGTTGATATCT 59.600 37.037 3.98 0.00 39.19 1.98
253 257 6.478512 AGAGAAACCCTGAGTTGATATCTC 57.521 41.667 3.98 0.00 39.19 2.75
257 261 8.324191 AGAAACCCTGAGTTGATATCTCATTA 57.676 34.615 3.98 0.00 40.46 1.90
260 264 7.921041 ACCCTGAGTTGATATCTCATTAAGA 57.079 36.000 3.98 0.00 40.46 2.10
262 266 8.428063 ACCCTGAGTTGATATCTCATTAAGAAG 58.572 37.037 3.98 0.00 40.46 2.85
266 270 9.993454 TGAGTTGATATCTCATTAAGAAGATGG 57.007 33.333 3.98 0.00 37.61 3.51
268 272 7.882271 AGTTGATATCTCATTAAGAAGATGGCC 59.118 37.037 3.98 0.00 37.61 5.36
270 274 7.982252 TGATATCTCATTAAGAAGATGGCCTT 58.018 34.615 3.32 0.00 37.61 4.35
271 275 8.443176 TGATATCTCATTAAGAAGATGGCCTTT 58.557 33.333 3.32 0.00 37.61 3.11
273 277 9.956640 ATATCTCATTAAGAAGATGGCCTTTAG 57.043 33.333 3.32 0.00 37.61 1.85
274 278 7.200434 TCTCATTAAGAAGATGGCCTTTAGT 57.800 36.000 3.32 0.00 34.68 2.24
275 279 7.633789 TCTCATTAAGAAGATGGCCTTTAGTT 58.366 34.615 3.32 0.00 34.68 2.24
276 280 8.768397 TCTCATTAAGAAGATGGCCTTTAGTTA 58.232 33.333 3.32 0.00 34.68 2.24
277 281 8.964476 TCATTAAGAAGATGGCCTTTAGTTAG 57.036 34.615 3.32 0.00 34.68 2.34
278 282 8.548877 TCATTAAGAAGATGGCCTTTAGTTAGT 58.451 33.333 3.32 0.00 34.68 2.24
279 283 9.832445 CATTAAGAAGATGGCCTTTAGTTAGTA 57.168 33.333 3.32 0.00 34.68 1.82
284 288 4.345547 AGATGGCCTTTAGTTAGTAGGAGC 59.654 45.833 3.32 0.00 0.00 4.70
285 289 3.446968 TGGCCTTTAGTTAGTAGGAGCA 58.553 45.455 3.32 0.00 0.00 4.26
286 290 3.451178 TGGCCTTTAGTTAGTAGGAGCAG 59.549 47.826 3.32 0.00 0.00 4.24
287 291 3.459145 GCCTTTAGTTAGTAGGAGCAGC 58.541 50.000 0.00 0.00 0.00 5.25
288 292 3.741700 GCCTTTAGTTAGTAGGAGCAGCC 60.742 52.174 0.00 0.00 0.00 4.85
300 304 2.827652 GGAGCAGCCTAGATGTACAAC 58.172 52.381 0.00 0.00 0.00 3.32
301 305 2.483889 GGAGCAGCCTAGATGTACAACC 60.484 54.545 0.00 0.00 0.00 3.77
302 306 2.168521 GAGCAGCCTAGATGTACAACCA 59.831 50.000 0.00 0.00 0.00 3.67
303 307 2.571653 AGCAGCCTAGATGTACAACCAA 59.428 45.455 0.00 0.00 0.00 3.67
304 308 2.678336 GCAGCCTAGATGTACAACCAAC 59.322 50.000 0.00 0.00 0.00 3.77
305 309 3.619979 GCAGCCTAGATGTACAACCAACT 60.620 47.826 0.00 0.00 0.00 3.16
306 310 4.184629 CAGCCTAGATGTACAACCAACTC 58.815 47.826 0.00 0.00 0.00 3.01
307 311 3.838317 AGCCTAGATGTACAACCAACTCA 59.162 43.478 0.00 0.00 0.00 3.41
308 312 3.933332 GCCTAGATGTACAACCAACTCAC 59.067 47.826 0.00 0.00 0.00 3.51
309 313 4.322801 GCCTAGATGTACAACCAACTCACT 60.323 45.833 0.00 0.00 0.00 3.41
310 314 5.105473 GCCTAGATGTACAACCAACTCACTA 60.105 44.000 0.00 0.00 0.00 2.74
311 315 6.573680 GCCTAGATGTACAACCAACTCACTAA 60.574 42.308 0.00 0.00 0.00 2.24
312 316 6.812160 CCTAGATGTACAACCAACTCACTAAC 59.188 42.308 0.00 0.00 0.00 2.34
313 317 5.548406 AGATGTACAACCAACTCACTAACC 58.452 41.667 0.00 0.00 0.00 2.85
314 318 4.757019 TGTACAACCAACTCACTAACCA 57.243 40.909 0.00 0.00 0.00 3.67
315 319 5.100344 TGTACAACCAACTCACTAACCAA 57.900 39.130 0.00 0.00 0.00 3.67
316 320 5.498393 TGTACAACCAACTCACTAACCAAA 58.502 37.500 0.00 0.00 0.00 3.28
317 321 4.976224 ACAACCAACTCACTAACCAAAC 57.024 40.909 0.00 0.00 0.00 2.93
318 322 3.697542 ACAACCAACTCACTAACCAAACC 59.302 43.478 0.00 0.00 0.00 3.27
327 331 2.554032 CACTAACCAAACCCTGAAGCAG 59.446 50.000 0.00 0.00 0.00 4.24
361 365 9.799106 ATACTCCCTCCATTTCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
362 366 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
363 367 6.672593 TCCCTCCATTTCAAAATATAGTGCT 58.327 36.000 0.00 0.00 0.00 4.40
364 368 6.772716 TCCCTCCATTTCAAAATATAGTGCTC 59.227 38.462 0.00 0.00 0.00 4.26
365 369 6.015940 CCCTCCATTTCAAAATATAGTGCTCC 60.016 42.308 0.00 0.00 0.00 4.70
366 370 6.774656 CCTCCATTTCAAAATATAGTGCTCCT 59.225 38.462 0.00 0.00 0.00 3.69
367 371 7.255381 CCTCCATTTCAAAATATAGTGCTCCTG 60.255 40.741 0.00 0.00 0.00 3.86
368 372 6.039717 TCCATTTCAAAATATAGTGCTCCTGC 59.960 38.462 0.00 0.00 40.20 4.85
379 383 1.167851 TGCTCCTGCATTTTTCGAGG 58.832 50.000 0.00 0.00 45.31 4.63
380 384 1.168714 GCTCCTGCATTTTTCGAGGT 58.831 50.000 0.00 0.00 39.41 3.85
381 385 1.541588 GCTCCTGCATTTTTCGAGGTT 59.458 47.619 0.00 0.00 39.41 3.50
382 386 2.414691 GCTCCTGCATTTTTCGAGGTTC 60.415 50.000 0.00 0.00 39.41 3.62
383 387 2.813754 CTCCTGCATTTTTCGAGGTTCA 59.186 45.455 0.00 0.00 0.00 3.18
384 388 3.218453 TCCTGCATTTTTCGAGGTTCAA 58.782 40.909 0.00 0.00 0.00 2.69
385 389 3.004315 TCCTGCATTTTTCGAGGTTCAAC 59.996 43.478 0.00 0.00 0.00 3.18
386 390 3.004734 CCTGCATTTTTCGAGGTTCAACT 59.995 43.478 0.00 0.00 0.00 3.16
387 391 4.499696 CCTGCATTTTTCGAGGTTCAACTT 60.500 41.667 0.00 0.00 0.00 2.66
388 392 5.004922 TGCATTTTTCGAGGTTCAACTTT 57.995 34.783 0.00 0.00 0.00 2.66
389 393 4.803088 TGCATTTTTCGAGGTTCAACTTTG 59.197 37.500 0.00 0.00 0.00 2.77
390 394 5.040635 GCATTTTTCGAGGTTCAACTTTGA 58.959 37.500 0.00 0.00 34.92 2.69
391 395 5.051708 GCATTTTTCGAGGTTCAACTTTGAC 60.052 40.000 0.00 0.00 36.83 3.18
392 396 4.625972 TTTTCGAGGTTCAACTTTGACC 57.374 40.909 0.00 0.00 36.83 4.02
393 397 2.992124 TCGAGGTTCAACTTTGACCA 57.008 45.000 11.01 0.00 36.83 4.02
394 398 3.485463 TCGAGGTTCAACTTTGACCAT 57.515 42.857 11.01 0.00 36.83 3.55
395 399 4.610605 TCGAGGTTCAACTTTGACCATA 57.389 40.909 11.01 0.00 36.83 2.74
396 400 4.963373 TCGAGGTTCAACTTTGACCATAA 58.037 39.130 11.01 0.00 36.83 1.90
397 401 5.369833 TCGAGGTTCAACTTTGACCATAAA 58.630 37.500 11.01 0.00 36.83 1.40
398 402 6.001460 TCGAGGTTCAACTTTGACCATAAAT 58.999 36.000 11.01 0.00 36.83 1.40
399 403 6.488683 TCGAGGTTCAACTTTGACCATAAATT 59.511 34.615 11.01 0.00 36.83 1.82
400 404 7.013846 TCGAGGTTCAACTTTGACCATAAATTT 59.986 33.333 0.00 0.00 36.83 1.82
401 405 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
402 406 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
403 407 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
404 408 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
405 409 9.535878 GTTCAACTTTGACCATAAATTTAACCA 57.464 29.630 1.21 0.00 36.83 3.67
407 411 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
408 412 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
409 413 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
410 414 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
411 415 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
412 416 7.931578 TGACCATAAATTTAACCAACGAGAT 57.068 32.000 1.21 0.00 0.00 2.75
413 417 7.981142 TGACCATAAATTTAACCAACGAGATC 58.019 34.615 1.21 0.00 0.00 2.75
414 418 7.608376 TGACCATAAATTTAACCAACGAGATCA 59.392 33.333 1.21 0.00 0.00 2.92
415 419 8.343168 ACCATAAATTTAACCAACGAGATCAA 57.657 30.769 1.21 0.00 0.00 2.57
416 420 8.241367 ACCATAAATTTAACCAACGAGATCAAC 58.759 33.333 1.21 0.00 0.00 3.18
417 421 8.458843 CCATAAATTTAACCAACGAGATCAACT 58.541 33.333 1.21 0.00 0.00 3.16
418 422 9.277565 CATAAATTTAACCAACGAGATCAACTG 57.722 33.333 1.21 0.00 0.00 3.16
419 423 4.742438 TTTAACCAACGAGATCAACTGC 57.258 40.909 0.00 0.00 0.00 4.40
420 424 1.148310 AACCAACGAGATCAACTGCG 58.852 50.000 0.00 0.00 0.00 5.18
421 425 0.670546 ACCAACGAGATCAACTGCGG 60.671 55.000 0.00 0.00 0.00 5.69
422 426 1.421485 CAACGAGATCAACTGCGGC 59.579 57.895 0.00 0.00 0.00 6.53
423 427 2.094659 AACGAGATCAACTGCGGCG 61.095 57.895 0.51 0.51 0.00 6.46
424 428 3.257561 CGAGATCAACTGCGGCGG 61.258 66.667 9.78 7.39 0.00 6.13
425 429 2.184322 GAGATCAACTGCGGCGGA 59.816 61.111 17.15 4.40 0.00 5.54
426 430 1.447838 GAGATCAACTGCGGCGGAA 60.448 57.895 17.15 0.62 0.00 4.30
427 431 1.424493 GAGATCAACTGCGGCGGAAG 61.424 60.000 17.15 7.35 0.00 3.46
428 432 1.447838 GATCAACTGCGGCGGAAGA 60.448 57.895 17.15 12.65 0.00 2.87
429 433 1.003839 ATCAACTGCGGCGGAAGAA 60.004 52.632 17.15 0.00 0.00 2.52
430 434 0.605319 ATCAACTGCGGCGGAAGAAA 60.605 50.000 17.15 0.00 0.00 2.52
431 435 0.816018 TCAACTGCGGCGGAAGAAAA 60.816 50.000 17.15 0.00 0.00 2.29
432 436 0.030101 CAACTGCGGCGGAAGAAAAA 59.970 50.000 17.15 0.00 0.00 1.94
487 491 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
488 492 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
489 493 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
490 494 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
491 495 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
492 496 5.009010 CACTGATATAATTTTTGCTCCCGCT 59.991 40.000 0.00 0.00 36.97 5.52
493 497 6.204688 CACTGATATAATTTTTGCTCCCGCTA 59.795 38.462 0.00 0.00 36.97 4.26
494 498 6.204882 ACTGATATAATTTTTGCTCCCGCTAC 59.795 38.462 0.00 0.00 36.97 3.58
495 499 6.058833 TGATATAATTTTTGCTCCCGCTACA 58.941 36.000 0.00 0.00 36.97 2.74
496 500 6.544197 TGATATAATTTTTGCTCCCGCTACAA 59.456 34.615 0.00 0.00 36.97 2.41
497 501 5.852282 ATAATTTTTGCTCCCGCTACAAT 57.148 34.783 0.00 0.00 36.97 2.71
498 502 3.782889 ATTTTTGCTCCCGCTACAATC 57.217 42.857 0.00 0.00 36.97 2.67
499 503 1.083489 TTTTGCTCCCGCTACAATCG 58.917 50.000 0.00 0.00 36.97 3.34
500 504 0.742990 TTTGCTCCCGCTACAATCGG 60.743 55.000 0.00 0.00 46.05 4.18
501 505 1.895020 TTGCTCCCGCTACAATCGGT 61.895 55.000 0.66 0.00 45.09 4.69
502 506 1.591863 GCTCCCGCTACAATCGGTC 60.592 63.158 0.66 0.00 45.09 4.79
503 507 2.017559 GCTCCCGCTACAATCGGTCT 62.018 60.000 0.66 0.00 45.09 3.85
504 508 0.460311 CTCCCGCTACAATCGGTCTT 59.540 55.000 0.66 0.00 45.09 3.01
505 509 0.174845 TCCCGCTACAATCGGTCTTG 59.825 55.000 0.66 0.00 45.09 3.02
506 510 0.174845 CCCGCTACAATCGGTCTTGA 59.825 55.000 0.66 0.00 45.09 3.02
507 511 1.202533 CCCGCTACAATCGGTCTTGAT 60.203 52.381 0.66 0.00 45.09 2.57
508 512 2.035449 CCCGCTACAATCGGTCTTGATA 59.965 50.000 0.66 0.00 45.09 2.15
509 513 3.309388 CCGCTACAATCGGTCTTGATAG 58.691 50.000 0.00 0.00 41.85 2.08
510 514 3.243434 CCGCTACAATCGGTCTTGATAGT 60.243 47.826 0.00 0.00 41.85 2.12
511 515 4.360563 CGCTACAATCGGTCTTGATAGTT 58.639 43.478 1.23 0.00 0.00 2.24
512 516 5.506815 CCGCTACAATCGGTCTTGATAGTTA 60.507 44.000 0.00 0.00 41.85 2.24
513 517 5.975344 CGCTACAATCGGTCTTGATAGTTAA 59.025 40.000 1.23 0.00 0.00 2.01
514 518 6.474427 CGCTACAATCGGTCTTGATAGTTAAA 59.526 38.462 1.23 0.00 0.00 1.52
515 519 7.169308 CGCTACAATCGGTCTTGATAGTTAAAT 59.831 37.037 1.23 0.00 0.00 1.40
516 520 8.827677 GCTACAATCGGTCTTGATAGTTAAATT 58.172 33.333 1.23 0.00 0.00 1.82
520 524 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
521 525 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
522 526 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
523 527 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
524 528 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
525 529 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
534 538 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
535 539 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
536 540 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
537 541 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
538 542 0.934496 CGGTCAAAGTTGAAGCACGA 59.066 50.000 0.00 0.00 39.21 4.35
539 543 1.332904 CGGTCAAAGTTGAAGCACGAC 60.333 52.381 0.00 0.00 39.21 4.34
540 544 1.002792 GGTCAAAGTTGAAGCACGACC 60.003 52.381 0.00 0.00 39.21 4.79
541 545 1.668751 GTCAAAGTTGAAGCACGACCA 59.331 47.619 0.00 0.00 39.21 4.02
542 546 1.668751 TCAAAGTTGAAGCACGACCAC 59.331 47.619 0.00 0.00 33.55 4.16
543 547 1.670811 CAAAGTTGAAGCACGACCACT 59.329 47.619 0.00 0.00 33.59 4.00
544 548 2.869801 CAAAGTTGAAGCACGACCACTA 59.130 45.455 0.00 0.00 33.59 2.74
545 549 3.402628 AAGTTGAAGCACGACCACTAT 57.597 42.857 0.00 0.00 33.59 2.12
546 550 4.530710 AAGTTGAAGCACGACCACTATA 57.469 40.909 0.00 0.00 33.59 1.31
547 551 4.737855 AGTTGAAGCACGACCACTATAT 57.262 40.909 0.00 0.00 33.59 0.86
548 552 5.086104 AGTTGAAGCACGACCACTATATT 57.914 39.130 0.00 0.00 33.59 1.28
549 553 4.870426 AGTTGAAGCACGACCACTATATTG 59.130 41.667 0.00 0.00 33.59 1.90
550 554 4.465632 TGAAGCACGACCACTATATTGT 57.534 40.909 0.00 0.00 0.00 2.71
551 555 4.180817 TGAAGCACGACCACTATATTGTG 58.819 43.478 9.98 9.98 37.66 3.33
562 566 5.567037 CACTATATTGTGGAATGGAGGGA 57.433 43.478 9.17 0.00 34.56 4.20
563 567 5.555017 CACTATATTGTGGAATGGAGGGAG 58.445 45.833 9.17 0.00 34.56 4.30
564 568 5.072329 CACTATATTGTGGAATGGAGGGAGT 59.928 44.000 9.17 0.00 34.56 3.85
565 569 6.270000 CACTATATTGTGGAATGGAGGGAGTA 59.730 42.308 9.17 0.00 34.56 2.59
566 570 5.832539 ATATTGTGGAATGGAGGGAGTAG 57.167 43.478 0.00 0.00 0.00 2.57
567 571 2.642171 TGTGGAATGGAGGGAGTAGT 57.358 50.000 0.00 0.00 0.00 2.73
568 572 2.915869 TGTGGAATGGAGGGAGTAGTT 58.084 47.619 0.00 0.00 0.00 2.24
569 573 4.069312 TGTGGAATGGAGGGAGTAGTTA 57.931 45.455 0.00 0.00 0.00 2.24
570 574 4.030913 TGTGGAATGGAGGGAGTAGTTAG 58.969 47.826 0.00 0.00 0.00 2.34
571 575 4.031611 GTGGAATGGAGGGAGTAGTTAGT 58.968 47.826 0.00 0.00 0.00 2.24
572 576 4.470304 GTGGAATGGAGGGAGTAGTTAGTT 59.530 45.833 0.00 0.00 0.00 2.24
573 577 5.659971 GTGGAATGGAGGGAGTAGTTAGTTA 59.340 44.000 0.00 0.00 0.00 2.24
590 594 3.022406 AGTTATATATCGGCCGTCCTCC 58.978 50.000 27.15 6.84 0.00 4.30
591 595 2.062971 TATATATCGGCCGTCCTCCC 57.937 55.000 27.15 0.00 0.00 4.30
605 609 1.315257 CCTCCCAACGAATTGCAGGG 61.315 60.000 0.00 0.00 40.98 4.45
621 625 1.745264 GGGAGAATCTGCCTCTCGG 59.255 63.158 13.89 0.00 40.29 4.63
648 673 4.458989 CACTTCCGATTCCAATCCAAAGAA 59.541 41.667 12.17 3.54 32.27 2.52
650 675 5.538433 ACTTCCGATTCCAATCCAAAGAAAA 59.462 36.000 12.17 0.00 32.27 2.29
653 678 7.710676 TCCGATTCCAATCCAAAGAAAATAA 57.289 32.000 0.00 0.00 31.68 1.40
654 679 8.128322 TCCGATTCCAATCCAAAGAAAATAAA 57.872 30.769 0.00 0.00 31.68 1.40
694 719 4.944962 TTTCGATGCATCACAAAGTAGG 57.055 40.909 25.70 6.79 0.00 3.18
695 720 3.885724 TCGATGCATCACAAAGTAGGA 57.114 42.857 25.70 9.03 0.00 2.94
696 721 3.785486 TCGATGCATCACAAAGTAGGAG 58.215 45.455 25.70 5.58 0.00 3.69
697 722 3.195610 TCGATGCATCACAAAGTAGGAGT 59.804 43.478 25.70 0.00 0.00 3.85
698 723 4.401202 TCGATGCATCACAAAGTAGGAGTA 59.599 41.667 25.70 0.00 0.00 2.59
699 724 5.069119 TCGATGCATCACAAAGTAGGAGTAT 59.931 40.000 25.70 0.00 0.00 2.12
700 725 6.264518 TCGATGCATCACAAAGTAGGAGTATA 59.735 38.462 25.70 0.00 0.00 1.47
701 726 6.584184 CGATGCATCACAAAGTAGGAGTATAG 59.416 42.308 25.70 0.00 0.00 1.31
859 887 3.296628 GCCACGGCATTGTTATAAATCG 58.703 45.455 2.36 0.00 41.49 3.34
881 909 2.612746 CTTTCCCCTCCCCCGGAA 60.613 66.667 0.73 0.00 36.35 4.30
902 930 5.409826 GGAACAACAACAACAACATCCAAAA 59.590 36.000 0.00 0.00 0.00 2.44
903 931 6.093357 GGAACAACAACAACAACATCCAAAAT 59.907 34.615 0.00 0.00 0.00 1.82
911 950 4.350368 ACAACATCCAAAATCCAAACCC 57.650 40.909 0.00 0.00 0.00 4.11
914 953 4.622260 ACATCCAAAATCCAAACCCAAG 57.378 40.909 0.00 0.00 0.00 3.61
922 961 1.408969 TCCAAACCCAAGCCAAGAAC 58.591 50.000 0.00 0.00 0.00 3.01
927 966 1.101049 ACCCAAGCCAAGAACACACG 61.101 55.000 0.00 0.00 0.00 4.49
940 979 2.533266 ACACACGCTGTTCTGAATCT 57.467 45.000 0.00 0.00 0.00 2.40
941 980 2.138320 ACACACGCTGTTCTGAATCTG 58.862 47.619 0.00 0.00 0.00 2.90
957 996 0.323816 TCTGTCCATCAGTCTCCGCT 60.324 55.000 0.00 0.00 43.97 5.52
974 1013 1.363744 GCTTCCACTGATTCGTCCAG 58.636 55.000 0.00 0.00 37.64 3.86
977 1016 1.811266 CCACTGATTCGTCCAGCCG 60.811 63.158 0.00 0.00 35.14 5.52
993 1032 1.204467 AGCCGAGAAGAAGAAGAGCTG 59.796 52.381 0.00 0.00 0.00 4.24
1057 1101 2.910688 CCTCGCAGGGTATGTTATGT 57.089 50.000 0.00 0.00 0.00 2.29
1058 1102 2.483876 CCTCGCAGGGTATGTTATGTG 58.516 52.381 0.00 0.00 0.00 3.21
1059 1103 1.867233 CTCGCAGGGTATGTTATGTGC 59.133 52.381 0.00 0.00 0.00 4.57
1060 1104 1.208293 TCGCAGGGTATGTTATGTGCA 59.792 47.619 0.00 0.00 0.00 4.57
1061 1105 1.599071 CGCAGGGTATGTTATGTGCAG 59.401 52.381 0.00 0.00 0.00 4.41
1062 1106 1.334869 GCAGGGTATGTTATGTGCAGC 59.665 52.381 0.00 0.00 0.00 5.25
1063 1107 2.642427 CAGGGTATGTTATGTGCAGCA 58.358 47.619 0.00 0.00 0.00 4.41
1064 1108 2.615447 CAGGGTATGTTATGTGCAGCAG 59.385 50.000 0.00 0.00 0.00 4.24
1065 1109 2.505407 AGGGTATGTTATGTGCAGCAGA 59.495 45.455 0.00 0.00 0.00 4.26
1066 1110 3.137176 AGGGTATGTTATGTGCAGCAGAT 59.863 43.478 10.38 10.38 0.00 2.90
1067 1111 3.885297 GGGTATGTTATGTGCAGCAGATT 59.115 43.478 10.85 0.00 0.00 2.40
1068 1112 4.261322 GGGTATGTTATGTGCAGCAGATTG 60.261 45.833 10.85 0.00 0.00 2.67
1069 1113 4.576053 GGTATGTTATGTGCAGCAGATTGA 59.424 41.667 10.85 0.00 0.00 2.57
1132 1185 3.405831 CTGAGCTCAACTGACCATTTCA 58.594 45.455 18.85 0.00 0.00 2.69
1315 1374 7.362802 AGTCCCTCATCTACTGGTAATTAAC 57.637 40.000 0.00 0.00 0.00 2.01
1355 1414 1.167851 CTCATGGCCGCTTTTCTTGA 58.832 50.000 0.00 0.00 0.00 3.02
1358 1417 2.562298 TCATGGCCGCTTTTCTTGATTT 59.438 40.909 0.00 0.00 0.00 2.17
1359 1418 2.723124 TGGCCGCTTTTCTTGATTTC 57.277 45.000 0.00 0.00 0.00 2.17
1361 1420 2.030007 TGGCCGCTTTTCTTGATTTCTG 60.030 45.455 0.00 0.00 0.00 3.02
1362 1421 1.988467 GCCGCTTTTCTTGATTTCTGC 59.012 47.619 0.00 0.00 0.00 4.26
1364 1423 2.030007 CCGCTTTTCTTGATTTCTGCCA 60.030 45.455 0.00 0.00 0.00 4.92
1365 1424 3.367703 CCGCTTTTCTTGATTTCTGCCAT 60.368 43.478 0.00 0.00 0.00 4.40
1366 1425 3.611113 CGCTTTTCTTGATTTCTGCCATG 59.389 43.478 0.00 0.00 0.00 3.66
1367 1426 3.930848 GCTTTTCTTGATTTCTGCCATGG 59.069 43.478 7.63 7.63 0.00 3.66
1368 1427 4.562143 GCTTTTCTTGATTTCTGCCATGGT 60.562 41.667 14.67 0.00 0.00 3.55
1369 1428 5.544650 CTTTTCTTGATTTCTGCCATGGTT 58.455 37.500 14.67 0.00 0.00 3.67
1370 1429 5.549742 TTTCTTGATTTCTGCCATGGTTT 57.450 34.783 14.67 0.00 0.00 3.27
1371 1430 5.549742 TTCTTGATTTCTGCCATGGTTTT 57.450 34.783 14.67 0.00 0.00 2.43
1372 1431 4.885413 TCTTGATTTCTGCCATGGTTTTG 58.115 39.130 14.67 1.40 0.00 2.44
1373 1432 4.588106 TCTTGATTTCTGCCATGGTTTTGA 59.412 37.500 14.67 3.90 0.00 2.69
1374 1433 5.246656 TCTTGATTTCTGCCATGGTTTTGAT 59.753 36.000 14.67 2.68 0.00 2.57
1375 1434 4.823157 TGATTTCTGCCATGGTTTTGATG 58.177 39.130 14.67 0.00 0.00 3.07
1376 1435 4.283978 TGATTTCTGCCATGGTTTTGATGT 59.716 37.500 14.67 0.00 0.00 3.06
1377 1436 4.686191 TTTCTGCCATGGTTTTGATGTT 57.314 36.364 14.67 0.00 0.00 2.71
1378 1437 5.798125 TTTCTGCCATGGTTTTGATGTTA 57.202 34.783 14.67 0.00 0.00 2.41
1379 1438 5.798125 TTCTGCCATGGTTTTGATGTTAA 57.202 34.783 14.67 0.00 0.00 2.01
1380 1439 5.132897 TCTGCCATGGTTTTGATGTTAAC 57.867 39.130 14.67 0.00 0.00 2.01
1381 1440 4.021544 TCTGCCATGGTTTTGATGTTAACC 60.022 41.667 14.67 0.00 43.28 2.85
1569 1631 2.044555 GGCATCAGCAGCAGCAAGA 61.045 57.895 3.17 0.87 45.49 3.02
1651 1722 1.219393 GCAGGTTCCTCTCCTTCGG 59.781 63.158 0.00 0.00 32.37 4.30
1676 1747 2.777692 TCCCAAGAAAGACCACTGAAGT 59.222 45.455 0.00 0.00 0.00 3.01
1684 1755 4.559862 AAGACCACTGAAGTAGATTGGG 57.440 45.455 0.00 0.00 29.06 4.12
1689 1760 2.026822 CACTGAAGTAGATTGGGGCAGT 60.027 50.000 0.00 0.00 35.70 4.40
1703 1774 1.501582 GGCAGTAACCAGAGATCCCT 58.498 55.000 0.00 0.00 0.00 4.20
1706 1777 1.115467 AGTAACCAGAGATCCCTGCG 58.885 55.000 0.00 0.00 32.97 5.18
1734 1809 3.518634 TCTTGGCTTGTGGTGTTTTTC 57.481 42.857 0.00 0.00 0.00 2.29
1763 1838 6.072112 TGTTTGAGATTTTAGCTTGTGGTC 57.928 37.500 0.00 0.00 0.00 4.02
1779 1855 5.097742 TGTGGTCTTGGGAGTATTACATG 57.902 43.478 0.00 0.00 0.00 3.21
1813 1890 7.907214 AAAAAGTTGTACTAGCACTCCATAG 57.093 36.000 0.00 0.00 0.00 2.23
1869 1950 5.646360 GTGGCTTGTGGTGTTGTAGTATTAT 59.354 40.000 0.00 0.00 0.00 1.28
1870 1951 6.150474 GTGGCTTGTGGTGTTGTAGTATTATT 59.850 38.462 0.00 0.00 0.00 1.40
1871 1952 7.334921 GTGGCTTGTGGTGTTGTAGTATTATTA 59.665 37.037 0.00 0.00 0.00 0.98
1897 1978 9.561069 ACATATATCTGTCCAGAAAAATGTACC 57.439 33.333 14.78 0.00 41.36 3.34
1941 2025 6.363167 AGATTTCATCTCATCTCATCCCTC 57.637 41.667 0.00 0.00 33.42 4.30
1970 2054 3.503748 AGCTAGCTTGTGGTGTTCATTTC 59.496 43.478 12.68 0.00 0.00 2.17
2042 2128 7.780008 TCAAGTTGAACTTTTCATAAGACGA 57.220 32.000 8.03 0.00 36.03 4.20
2045 2131 6.945072 AGTTGAACTTTTCATAAGACGACAC 58.055 36.000 0.00 0.00 39.84 3.67
2051 2137 7.956420 ACTTTTCATAAGACGACACATGTAA 57.044 32.000 0.00 0.00 0.00 2.41
2052 2138 8.018677 ACTTTTCATAAGACGACACATGTAAG 57.981 34.615 0.00 0.00 0.00 2.34
2053 2139 6.961359 TTTCATAAGACGACACATGTAAGG 57.039 37.500 0.00 0.00 0.00 2.69
2054 2140 4.430007 TCATAAGACGACACATGTAAGGC 58.570 43.478 0.00 0.00 0.00 4.35
2055 2141 2.094762 AAGACGACACATGTAAGGCC 57.905 50.000 0.00 0.00 0.00 5.19
2056 2142 0.973632 AGACGACACATGTAAGGCCA 59.026 50.000 5.01 0.00 0.00 5.36
2057 2143 1.066858 AGACGACACATGTAAGGCCAG 60.067 52.381 5.01 0.00 0.00 4.85
2058 2144 0.685097 ACGACACATGTAAGGCCAGT 59.315 50.000 5.01 0.00 0.00 4.00
2087 2173 7.572724 GCCACTACCTCTGTACACTAATATACG 60.573 44.444 0.00 0.00 0.00 3.06
2088 2174 7.094890 CCACTACCTCTGTACACTAATATACGG 60.095 44.444 0.00 0.00 0.00 4.02
2103 2198 3.775661 ATACGGCATTTTTGCAGTACC 57.224 42.857 12.01 0.00 45.17 3.34
2118 2213 3.976306 GCAGTACCGCAAAAACGTTATTT 59.024 39.130 0.00 1.92 0.00 1.40
2121 2216 6.183359 GCAGTACCGCAAAAACGTTATTTAAG 60.183 38.462 0.00 2.87 0.00 1.85
2123 2218 7.267600 CAGTACCGCAAAAACGTTATTTAAGAG 59.732 37.037 0.00 0.00 0.00 2.85
2176 2272 8.592105 TTAGACCCAAAATAAACGATATACCG 57.408 34.615 0.00 0.00 0.00 4.02
2206 2430 2.037251 TGGTGTAGAGGCAGTCAACTTC 59.963 50.000 0.00 0.00 0.00 3.01
2234 2458 4.489810 CGAAGTACACTCTGAGATGCTTT 58.510 43.478 12.44 0.29 0.00 3.51
2237 2461 5.590530 AGTACACTCTGAGATGCTTTAGG 57.409 43.478 12.44 0.00 0.00 2.69
2238 2462 5.265191 AGTACACTCTGAGATGCTTTAGGA 58.735 41.667 12.44 0.00 0.00 2.94
2269 2494 1.185315 AATGGCCAAATCCAGAACCG 58.815 50.000 10.96 0.00 39.89 4.44
2270 2495 0.331278 ATGGCCAAATCCAGAACCGA 59.669 50.000 10.96 0.00 39.89 4.69
2271 2496 0.111446 TGGCCAAATCCAGAACCGAA 59.889 50.000 0.61 0.00 0.00 4.30
2272 2497 0.811281 GGCCAAATCCAGAACCGAAG 59.189 55.000 0.00 0.00 0.00 3.79
2273 2498 1.534729 GCCAAATCCAGAACCGAAGT 58.465 50.000 0.00 0.00 0.00 3.01
2274 2499 2.617021 GGCCAAATCCAGAACCGAAGTA 60.617 50.000 0.00 0.00 0.00 2.24
2275 2500 2.418976 GCCAAATCCAGAACCGAAGTAC 59.581 50.000 0.00 0.00 0.00 2.73
2276 2501 3.670625 CCAAATCCAGAACCGAAGTACA 58.329 45.455 0.00 0.00 0.00 2.90
2277 2502 3.435671 CCAAATCCAGAACCGAAGTACAC 59.564 47.826 0.00 0.00 0.00 2.90
2280 2505 1.891150 TCCAGAACCGAAGTACACTCC 59.109 52.381 0.00 0.00 0.00 3.85
2290 2515 3.064958 CGAAGTACACTCCGAGATGCTTA 59.935 47.826 1.33 0.00 0.00 3.09
2292 2517 4.640789 AGTACACTCCGAGATGCTTAAG 57.359 45.455 1.33 0.00 0.00 1.85
2294 2519 2.457598 ACACTCCGAGATGCTTAAGGA 58.542 47.619 4.29 0.78 0.00 3.36
2299 2524 4.878397 ACTCCGAGATGCTTAAGGAAATTG 59.122 41.667 0.00 0.00 0.00 2.32
2337 2562 1.891150 TCCAGAACCGAAGTACACTCC 59.109 52.381 0.00 0.00 0.00 3.85
2340 2565 2.030540 CAGAACCGAAGTACACTCCGAA 60.031 50.000 0.00 0.00 0.00 4.30
2345 2570 1.659098 CGAAGTACACTCCGAAATGCC 59.341 52.381 0.00 0.00 0.00 4.40
2349 2575 1.066430 GTACACTCCGAAATGCCCAGA 60.066 52.381 0.00 0.00 0.00 3.86
2358 2584 4.709397 TCCGAAATGCCCAGAAAATTACAT 59.291 37.500 0.00 0.00 0.00 2.29
2386 2612 6.461110 AATGGCCAATTCTAGATTCAGTTG 57.539 37.500 10.96 0.00 0.00 3.16
2404 2630 5.972107 AGTTGCACTGATAAAGCTGATTT 57.028 34.783 0.00 0.00 34.72 2.17
2422 2648 7.383300 AGCTGATTTCAAATAGCTGTTTGTTTC 59.617 33.333 28.31 22.82 44.23 2.78
2425 2651 7.652909 TGATTTCAAATAGCTGTTTGTTTCCAG 59.347 33.333 28.31 8.03 39.50 3.86
2427 2653 6.072112 TCAAATAGCTGTTTGTTTCCAGAC 57.928 37.500 28.31 0.00 39.50 3.51
2441 2667 5.477291 TGTTTCCAGACTCTAGATTCGACTT 59.523 40.000 4.59 0.00 0.00 3.01
2454 2680 1.896220 TCGACTTTGCCAGCTGATTT 58.104 45.000 17.39 0.00 0.00 2.17
2479 2705 7.725251 TCAAATAGCTGGTTGTTTTCAGATTT 58.275 30.769 0.00 0.00 31.67 2.17
2487 2713 6.437928 TGGTTGTTTTCAGATTTCAGATTCG 58.562 36.000 0.00 0.00 0.00 3.34
2488 2714 5.858581 GGTTGTTTTCAGATTTCAGATTCGG 59.141 40.000 0.00 0.00 0.00 4.30
2492 2718 5.964958 TTTCAGATTTCAGATTCGGCTTT 57.035 34.783 0.00 0.00 0.00 3.51
2521 2747 4.201822 GCAAAGTTGAATCTCGTCCCATAC 60.202 45.833 0.00 0.00 0.00 2.39
2524 2750 3.133003 AGTTGAATCTCGTCCCATACCAG 59.867 47.826 0.00 0.00 0.00 4.00
2537 2763 5.422012 GTCCCATACCAGAATCCAAACAAAT 59.578 40.000 0.00 0.00 0.00 2.32
2540 2766 6.459573 CCCATACCAGAATCCAAACAAATACG 60.460 42.308 0.00 0.00 0.00 3.06
2541 2767 6.317642 CCATACCAGAATCCAAACAAATACGA 59.682 38.462 0.00 0.00 0.00 3.43
2542 2768 5.622770 ACCAGAATCCAAACAAATACGAC 57.377 39.130 0.00 0.00 0.00 4.34
2555 2781 5.476614 ACAAATACGACCTTAGACTTCCAC 58.523 41.667 0.00 0.00 0.00 4.02
2567 2793 4.273148 AGACTTCCACTTGGACATACAC 57.727 45.455 0.00 0.00 45.39 2.90
2578 2804 4.380843 TGGACATACACCTTCAAACCAT 57.619 40.909 0.00 0.00 0.00 3.55
2583 2809 1.238439 ACACCTTCAAACCATCTGCG 58.762 50.000 0.00 0.00 0.00 5.18
2587 2813 1.522668 CTTCAAACCATCTGCGTCCA 58.477 50.000 0.00 0.00 0.00 4.02
2604 2830 3.721868 ATCCGGACCGTGGATGTT 58.278 55.556 6.12 0.00 44.51 2.71
2605 2831 2.904835 ATCCGGACCGTGGATGTTA 58.095 52.632 6.12 0.00 44.51 2.41
2606 2832 1.420430 ATCCGGACCGTGGATGTTAT 58.580 50.000 6.12 0.00 44.51 1.89
2607 2833 1.196911 TCCGGACCGTGGATGTTATT 58.803 50.000 13.94 0.00 0.00 1.40
2608 2834 2.386779 TCCGGACCGTGGATGTTATTA 58.613 47.619 13.94 0.00 0.00 0.98
2609 2835 2.363038 TCCGGACCGTGGATGTTATTAG 59.637 50.000 13.94 0.00 0.00 1.73
2610 2836 2.132762 CGGACCGTGGATGTTATTAGC 58.867 52.381 5.48 0.00 0.00 3.09
2611 2837 2.132762 GGACCGTGGATGTTATTAGCG 58.867 52.381 0.00 0.00 0.00 4.26
2612 2838 1.525619 GACCGTGGATGTTATTAGCGC 59.474 52.381 0.00 0.00 0.00 5.92
2613 2839 0.865769 CCGTGGATGTTATTAGCGCC 59.134 55.000 2.29 0.00 0.00 6.53
2614 2840 0.506932 CGTGGATGTTATTAGCGCCG 59.493 55.000 2.29 0.00 0.00 6.46
2615 2841 1.860676 GTGGATGTTATTAGCGCCGA 58.139 50.000 2.29 0.00 0.00 5.54
2616 2842 2.206750 GTGGATGTTATTAGCGCCGAA 58.793 47.619 2.29 0.00 0.00 4.30
2617 2843 2.033151 GTGGATGTTATTAGCGCCGAAC 60.033 50.000 2.29 3.95 0.00 3.95
2618 2844 2.159014 TGGATGTTATTAGCGCCGAACT 60.159 45.455 2.29 0.00 0.00 3.01
2619 2845 2.221055 GGATGTTATTAGCGCCGAACTG 59.779 50.000 2.29 0.00 0.00 3.16
2620 2846 1.003851 TGTTATTAGCGCCGAACTGC 58.996 50.000 2.29 0.00 0.00 4.40
2621 2847 1.003851 GTTATTAGCGCCGAACTGCA 58.996 50.000 2.29 0.00 0.00 4.41
2622 2848 1.004927 GTTATTAGCGCCGAACTGCAG 60.005 52.381 13.48 13.48 0.00 4.41
2623 2849 0.529773 TATTAGCGCCGAACTGCAGG 60.530 55.000 19.93 1.24 0.00 4.85
2624 2850 3.824028 TATTAGCGCCGAACTGCAGGG 62.824 57.143 19.93 11.00 0.00 4.45
2628 2854 4.643387 GCCGAACTGCAGGGTGGT 62.643 66.667 19.93 0.00 0.00 4.16
2629 2855 2.113139 CCGAACTGCAGGGTGGTT 59.887 61.111 19.93 2.89 0.00 3.67
2630 2856 1.966451 CCGAACTGCAGGGTGGTTC 60.966 63.158 19.93 11.90 36.83 3.62
2631 2857 1.071471 CGAACTGCAGGGTGGTTCT 59.929 57.895 19.93 0.00 37.69 3.01
2632 2858 1.230635 CGAACTGCAGGGTGGTTCTG 61.231 60.000 19.93 6.05 37.69 3.02
2633 2859 0.108585 GAACTGCAGGGTGGTTCTGA 59.891 55.000 19.93 0.00 37.11 3.27
2634 2860 0.179018 AACTGCAGGGTGGTTCTGAC 60.179 55.000 19.93 0.00 34.36 3.51
2635 2861 1.344953 ACTGCAGGGTGGTTCTGACA 61.345 55.000 19.93 0.00 34.36 3.58
2636 2862 0.886490 CTGCAGGGTGGTTCTGACAC 60.886 60.000 5.57 0.00 38.10 3.67
2637 2863 1.148273 GCAGGGTGGTTCTGACACA 59.852 57.895 0.00 0.00 40.54 3.72
2638 2864 0.250901 GCAGGGTGGTTCTGACACAT 60.251 55.000 0.00 0.00 40.54 3.21
2639 2865 1.819305 GCAGGGTGGTTCTGACACATT 60.819 52.381 0.00 0.00 40.54 2.71
2640 2866 2.586425 CAGGGTGGTTCTGACACATTT 58.414 47.619 0.00 0.00 40.54 2.32
2641 2867 2.958355 CAGGGTGGTTCTGACACATTTT 59.042 45.455 0.00 0.00 40.54 1.82
2642 2868 3.384467 CAGGGTGGTTCTGACACATTTTT 59.616 43.478 0.00 0.00 40.54 1.94
2665 2891 7.778470 TTTTTCACAAACCGAAAATAAGCAT 57.222 28.000 0.00 0.00 40.87 3.79
2666 2892 6.761731 TTTCACAAACCGAAAATAAGCATG 57.238 33.333 0.00 0.00 29.63 4.06
2667 2893 5.697473 TCACAAACCGAAAATAAGCATGA 57.303 34.783 0.00 0.00 0.00 3.07
2668 2894 5.698832 TCACAAACCGAAAATAAGCATGAG 58.301 37.500 0.00 0.00 0.00 2.90
2669 2895 4.858692 CACAAACCGAAAATAAGCATGAGG 59.141 41.667 0.00 0.00 0.00 3.86
2670 2896 4.764823 ACAAACCGAAAATAAGCATGAGGA 59.235 37.500 0.00 0.00 0.00 3.71
2671 2897 4.965119 AACCGAAAATAAGCATGAGGAC 57.035 40.909 0.00 0.00 0.00 3.85
2672 2898 4.222124 ACCGAAAATAAGCATGAGGACT 57.778 40.909 0.00 0.00 0.00 3.85
2673 2899 4.589908 ACCGAAAATAAGCATGAGGACTT 58.410 39.130 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 66 0.105246 TTGGGCACAAAGTGGGGATT 60.105 50.000 0.00 0.00 33.64 3.01
67 70 2.206635 TTGTTGGGCACAAAGTGGG 58.793 52.632 1.02 0.00 42.76 4.61
122 126 2.766263 ACCTGATGAAACCGAGCTATCA 59.234 45.455 0.00 0.00 0.00 2.15
126 130 0.976641 TCACCTGATGAAACCGAGCT 59.023 50.000 0.00 0.00 33.02 4.09
188 192 3.256879 GTCAGTGAAGAGACATGTGGAGA 59.743 47.826 1.15 0.00 34.93 3.71
189 193 3.006217 TGTCAGTGAAGAGACATGTGGAG 59.994 47.826 1.15 0.00 39.65 3.86
190 194 2.965147 TGTCAGTGAAGAGACATGTGGA 59.035 45.455 1.15 0.00 39.65 4.02
191 195 3.391506 TGTCAGTGAAGAGACATGTGG 57.608 47.619 1.15 0.00 39.65 4.17
205 209 9.950680 CTAACAAATTGTAGTTCAAATGTCAGT 57.049 29.630 0.00 0.00 38.38 3.41
215 219 8.290325 CAGGGTTTCTCTAACAAATTGTAGTTC 58.710 37.037 0.00 0.00 38.55 3.01
222 226 7.060421 TCAACTCAGGGTTTCTCTAACAAATT 58.940 34.615 0.00 0.00 38.55 1.82
223 227 6.601332 TCAACTCAGGGTTTCTCTAACAAAT 58.399 36.000 0.00 0.00 38.55 2.32
224 228 5.996644 TCAACTCAGGGTTTCTCTAACAAA 58.003 37.500 0.00 0.00 38.55 2.83
225 229 5.623956 TCAACTCAGGGTTTCTCTAACAA 57.376 39.130 0.00 0.00 38.55 2.83
227 231 7.787028 AGATATCAACTCAGGGTTTCTCTAAC 58.213 38.462 5.32 0.00 35.74 2.34
228 232 7.619698 TGAGATATCAACTCAGGGTTTCTCTAA 59.380 37.037 12.07 0.00 38.19 2.10
229 233 7.126061 TGAGATATCAACTCAGGGTTTCTCTA 58.874 38.462 12.07 0.00 38.19 2.43
230 234 5.960811 TGAGATATCAACTCAGGGTTTCTCT 59.039 40.000 12.07 0.31 38.19 3.10
231 235 6.227298 TGAGATATCAACTCAGGGTTTCTC 57.773 41.667 5.32 5.84 39.10 2.87
233 237 8.964476 TTAATGAGATATCAACTCAGGGTTTC 57.036 34.615 5.32 0.00 45.49 2.78
234 238 8.772250 TCTTAATGAGATATCAACTCAGGGTTT 58.228 33.333 5.32 0.00 45.49 3.27
235 239 8.324191 TCTTAATGAGATATCAACTCAGGGTT 57.676 34.615 5.32 0.00 45.49 4.11
236 240 7.921041 TCTTAATGAGATATCAACTCAGGGT 57.079 36.000 5.32 0.00 45.49 4.34
240 244 9.993454 CCATCTTCTTAATGAGATATCAACTCA 57.007 33.333 5.32 0.36 46.17 3.41
241 245 8.934825 GCCATCTTCTTAATGAGATATCAACTC 58.065 37.037 5.32 0.00 33.49 3.01
243 247 7.882271 AGGCCATCTTCTTAATGAGATATCAAC 59.118 37.037 5.01 0.00 33.49 3.18
244 248 7.982252 AGGCCATCTTCTTAATGAGATATCAA 58.018 34.615 5.01 0.00 33.49 2.57
245 249 7.565190 AGGCCATCTTCTTAATGAGATATCA 57.435 36.000 5.01 0.00 33.49 2.15
246 250 8.860780 AAAGGCCATCTTCTTAATGAGATATC 57.139 34.615 5.01 0.00 33.94 1.63
248 252 8.938883 ACTAAAGGCCATCTTCTTAATGAGATA 58.061 33.333 5.01 0.00 33.94 1.98
249 253 7.810260 ACTAAAGGCCATCTTCTTAATGAGAT 58.190 34.615 5.01 0.00 33.94 2.75
251 255 7.872113 AACTAAAGGCCATCTTCTTAATGAG 57.128 36.000 5.01 0.00 33.94 2.90
252 256 8.548877 ACTAACTAAAGGCCATCTTCTTAATGA 58.451 33.333 5.01 0.00 33.94 2.57
253 257 8.738645 ACTAACTAAAGGCCATCTTCTTAATG 57.261 34.615 5.01 0.00 33.94 1.90
257 261 6.672657 TCCTACTAACTAAAGGCCATCTTCTT 59.327 38.462 5.01 0.00 33.94 2.52
260 264 5.163290 GCTCCTACTAACTAAAGGCCATCTT 60.163 44.000 5.01 0.00 37.28 2.40
262 266 4.101119 TGCTCCTACTAACTAAAGGCCATC 59.899 45.833 5.01 0.00 0.00 3.51
264 268 3.446968 TGCTCCTACTAACTAAAGGCCA 58.553 45.455 5.01 0.00 0.00 5.36
265 269 3.741700 GCTGCTCCTACTAACTAAAGGCC 60.742 52.174 0.00 0.00 0.00 5.19
266 270 3.459145 GCTGCTCCTACTAACTAAAGGC 58.541 50.000 0.00 0.00 0.00 4.35
268 272 5.828859 TCTAGGCTGCTCCTACTAACTAAAG 59.171 44.000 0.00 0.00 45.41 1.85
270 274 5.384145 TCTAGGCTGCTCCTACTAACTAA 57.616 43.478 0.00 0.00 45.41 2.24
271 275 5.163077 ACATCTAGGCTGCTCCTACTAACTA 60.163 44.000 0.00 0.00 45.41 2.24
273 277 3.892588 ACATCTAGGCTGCTCCTACTAAC 59.107 47.826 0.00 0.00 45.41 2.34
274 278 4.186077 ACATCTAGGCTGCTCCTACTAA 57.814 45.455 0.00 0.00 45.41 2.24
275 279 3.885976 ACATCTAGGCTGCTCCTACTA 57.114 47.619 0.00 0.00 45.41 1.82
276 280 2.765689 ACATCTAGGCTGCTCCTACT 57.234 50.000 0.00 0.00 45.41 2.57
277 281 3.223435 TGTACATCTAGGCTGCTCCTAC 58.777 50.000 0.00 0.00 45.41 3.18
278 282 3.595190 TGTACATCTAGGCTGCTCCTA 57.405 47.619 0.00 5.42 45.41 2.94
284 288 4.184629 GAGTTGGTTGTACATCTAGGCTG 58.815 47.826 0.00 0.00 0.00 4.85
285 289 3.838317 TGAGTTGGTTGTACATCTAGGCT 59.162 43.478 0.00 0.00 0.00 4.58
286 290 3.933332 GTGAGTTGGTTGTACATCTAGGC 59.067 47.826 0.00 0.00 0.00 3.93
287 291 5.407407 AGTGAGTTGGTTGTACATCTAGG 57.593 43.478 0.00 0.00 0.00 3.02
288 292 6.812160 GGTTAGTGAGTTGGTTGTACATCTAG 59.188 42.308 0.00 0.00 0.00 2.43
289 293 6.268158 TGGTTAGTGAGTTGGTTGTACATCTA 59.732 38.462 0.00 0.00 0.00 1.98
291 295 5.302360 TGGTTAGTGAGTTGGTTGTACATC 58.698 41.667 0.00 0.00 0.00 3.06
292 296 5.298989 TGGTTAGTGAGTTGGTTGTACAT 57.701 39.130 0.00 0.00 0.00 2.29
295 299 4.883006 GGTTTGGTTAGTGAGTTGGTTGTA 59.117 41.667 0.00 0.00 0.00 2.41
296 300 3.697542 GGTTTGGTTAGTGAGTTGGTTGT 59.302 43.478 0.00 0.00 0.00 3.32
297 301 3.067601 GGGTTTGGTTAGTGAGTTGGTTG 59.932 47.826 0.00 0.00 0.00 3.77
298 302 3.053170 AGGGTTTGGTTAGTGAGTTGGTT 60.053 43.478 0.00 0.00 0.00 3.67
299 303 2.512476 AGGGTTTGGTTAGTGAGTTGGT 59.488 45.455 0.00 0.00 0.00 3.67
300 304 2.884639 CAGGGTTTGGTTAGTGAGTTGG 59.115 50.000 0.00 0.00 0.00 3.77
301 305 3.815809 TCAGGGTTTGGTTAGTGAGTTG 58.184 45.455 0.00 0.00 0.00 3.16
302 306 4.461198 CTTCAGGGTTTGGTTAGTGAGTT 58.539 43.478 0.00 0.00 0.00 3.01
303 307 3.747708 GCTTCAGGGTTTGGTTAGTGAGT 60.748 47.826 0.00 0.00 0.00 3.41
304 308 2.814336 GCTTCAGGGTTTGGTTAGTGAG 59.186 50.000 0.00 0.00 0.00 3.51
305 309 2.173782 TGCTTCAGGGTTTGGTTAGTGA 59.826 45.455 0.00 0.00 0.00 3.41
306 310 2.554032 CTGCTTCAGGGTTTGGTTAGTG 59.446 50.000 0.00 0.00 0.00 2.74
307 311 2.863809 CTGCTTCAGGGTTTGGTTAGT 58.136 47.619 0.00 0.00 0.00 2.24
308 312 1.541588 GCTGCTTCAGGGTTTGGTTAG 59.458 52.381 0.00 0.00 31.21 2.34
309 313 1.133637 TGCTGCTTCAGGGTTTGGTTA 60.134 47.619 0.00 0.00 31.21 2.85
310 314 0.396974 TGCTGCTTCAGGGTTTGGTT 60.397 50.000 0.00 0.00 31.21 3.67
311 315 0.396974 TTGCTGCTTCAGGGTTTGGT 60.397 50.000 0.00 0.00 31.21 3.67
312 316 0.752054 TTTGCTGCTTCAGGGTTTGG 59.248 50.000 0.00 0.00 31.21 3.28
313 317 2.600470 TTTTGCTGCTTCAGGGTTTG 57.400 45.000 0.00 0.00 31.21 2.93
336 340 7.719633 GCACTATATTTTGAAATGGAGGGAGTA 59.280 37.037 0.00 0.00 0.00 2.59
338 342 6.774656 AGCACTATATTTTGAAATGGAGGGAG 59.225 38.462 0.00 0.00 0.00 4.30
340 344 6.015940 GGAGCACTATATTTTGAAATGGAGGG 60.016 42.308 0.00 0.00 0.00 4.30
341 345 6.774656 AGGAGCACTATATTTTGAAATGGAGG 59.225 38.462 0.00 0.00 0.00 4.30
361 365 1.168714 ACCTCGAAAAATGCAGGAGC 58.831 50.000 0.00 0.00 42.57 4.70
362 366 2.813754 TGAACCTCGAAAAATGCAGGAG 59.186 45.455 0.00 0.00 0.00 3.69
363 367 2.857483 TGAACCTCGAAAAATGCAGGA 58.143 42.857 0.00 0.00 0.00 3.86
364 368 3.004734 AGTTGAACCTCGAAAAATGCAGG 59.995 43.478 0.00 0.00 0.00 4.85
365 369 4.228912 AGTTGAACCTCGAAAAATGCAG 57.771 40.909 0.00 0.00 0.00 4.41
366 370 4.647424 AAGTTGAACCTCGAAAAATGCA 57.353 36.364 0.00 0.00 0.00 3.96
367 371 5.040635 TCAAAGTTGAACCTCGAAAAATGC 58.959 37.500 0.00 0.00 33.55 3.56
368 372 5.458779 GGTCAAAGTTGAACCTCGAAAAATG 59.541 40.000 0.00 0.00 38.96 2.32
369 373 5.126384 TGGTCAAAGTTGAACCTCGAAAAAT 59.874 36.000 6.62 0.00 44.20 1.82
370 374 4.459685 TGGTCAAAGTTGAACCTCGAAAAA 59.540 37.500 6.62 0.00 44.20 1.94
371 375 4.011023 TGGTCAAAGTTGAACCTCGAAAA 58.989 39.130 6.62 0.00 44.20 2.29
372 376 3.611970 TGGTCAAAGTTGAACCTCGAAA 58.388 40.909 6.62 0.00 44.20 3.46
373 377 3.269538 TGGTCAAAGTTGAACCTCGAA 57.730 42.857 6.62 0.00 44.20 3.71
374 378 2.992124 TGGTCAAAGTTGAACCTCGA 57.008 45.000 6.62 0.00 44.20 4.04
375 379 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
376 380 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
377 381 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
378 382 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
379 383 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
381 385 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
382 386 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
383 387 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
384 388 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
385 389 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
386 390 8.167605 TCTCGTTGGTTAAATTTATGGTCAAA 57.832 30.769 0.00 0.00 0.00 2.69
387 391 7.747155 TCTCGTTGGTTAAATTTATGGTCAA 57.253 32.000 0.00 0.00 0.00 3.18
388 392 7.608376 TGATCTCGTTGGTTAAATTTATGGTCA 59.392 33.333 0.00 0.00 0.00 4.02
389 393 7.981142 TGATCTCGTTGGTTAAATTTATGGTC 58.019 34.615 0.00 0.00 0.00 4.02
390 394 7.931578 TGATCTCGTTGGTTAAATTTATGGT 57.068 32.000 0.00 0.00 0.00 3.55
391 395 8.458843 AGTTGATCTCGTTGGTTAAATTTATGG 58.541 33.333 0.00 0.00 0.00 2.74
392 396 9.277565 CAGTTGATCTCGTTGGTTAAATTTATG 57.722 33.333 0.00 0.00 0.00 1.90
393 397 7.968405 GCAGTTGATCTCGTTGGTTAAATTTAT 59.032 33.333 0.00 0.00 0.00 1.40
394 398 7.302524 GCAGTTGATCTCGTTGGTTAAATTTA 58.697 34.615 0.00 0.00 0.00 1.40
395 399 6.149633 GCAGTTGATCTCGTTGGTTAAATTT 58.850 36.000 0.00 0.00 0.00 1.82
396 400 5.616866 CGCAGTTGATCTCGTTGGTTAAATT 60.617 40.000 0.00 0.00 0.00 1.82
397 401 4.142902 CGCAGTTGATCTCGTTGGTTAAAT 60.143 41.667 0.00 0.00 0.00 1.40
398 402 3.185594 CGCAGTTGATCTCGTTGGTTAAA 59.814 43.478 0.00 0.00 0.00 1.52
399 403 2.734606 CGCAGTTGATCTCGTTGGTTAA 59.265 45.455 0.00 0.00 0.00 2.01
400 404 2.333926 CGCAGTTGATCTCGTTGGTTA 58.666 47.619 0.00 0.00 0.00 2.85
401 405 1.148310 CGCAGTTGATCTCGTTGGTT 58.852 50.000 0.00 0.00 0.00 3.67
402 406 0.670546 CCGCAGTTGATCTCGTTGGT 60.671 55.000 0.00 0.00 0.00 3.67
403 407 1.970917 GCCGCAGTTGATCTCGTTGG 61.971 60.000 0.00 0.00 0.00 3.77
404 408 1.421485 GCCGCAGTTGATCTCGTTG 59.579 57.895 0.00 0.00 0.00 4.10
405 409 2.094659 CGCCGCAGTTGATCTCGTT 61.095 57.895 0.00 0.00 0.00 3.85
406 410 2.507102 CGCCGCAGTTGATCTCGT 60.507 61.111 0.00 0.00 0.00 4.18
407 411 3.257561 CCGCCGCAGTTGATCTCG 61.258 66.667 0.00 0.00 0.00 4.04
408 412 1.424493 CTTCCGCCGCAGTTGATCTC 61.424 60.000 0.00 0.00 0.00 2.75
409 413 1.448540 CTTCCGCCGCAGTTGATCT 60.449 57.895 0.00 0.00 0.00 2.75
410 414 1.019278 TTCTTCCGCCGCAGTTGATC 61.019 55.000 0.00 0.00 0.00 2.92
411 415 0.605319 TTTCTTCCGCCGCAGTTGAT 60.605 50.000 0.00 0.00 0.00 2.57
412 416 0.816018 TTTTCTTCCGCCGCAGTTGA 60.816 50.000 0.00 0.00 0.00 3.18
413 417 0.030101 TTTTTCTTCCGCCGCAGTTG 59.970 50.000 0.00 0.00 0.00 3.16
414 418 2.410466 TTTTTCTTCCGCCGCAGTT 58.590 47.368 0.00 0.00 0.00 3.16
415 419 4.150994 TTTTTCTTCCGCCGCAGT 57.849 50.000 0.00 0.00 0.00 4.40
461 465 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
462 466 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
463 467 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
464 468 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
465 469 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
466 470 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
467 471 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
489 493 3.966154 ACTATCAAGACCGATTGTAGCG 58.034 45.455 0.00 0.00 30.99 4.26
490 494 7.766219 TTTAACTATCAAGACCGATTGTAGC 57.234 36.000 0.00 0.00 32.22 3.58
494 498 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
495 499 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
496 500 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
497 501 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
498 502 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
499 503 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
508 512 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
509 513 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
510 514 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
511 515 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
512 516 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
513 517 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
514 518 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
515 519 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
516 520 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
517 521 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
518 522 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
519 523 0.934496 TCGTGCTTCAACTTTGACCG 59.066 50.000 0.00 0.00 36.83 4.79
520 524 1.002792 GGTCGTGCTTCAACTTTGACC 60.003 52.381 0.00 0.00 36.83 4.02
521 525 1.668751 TGGTCGTGCTTCAACTTTGAC 59.331 47.619 0.00 0.00 36.83 3.18
522 526 1.668751 GTGGTCGTGCTTCAACTTTGA 59.331 47.619 0.00 0.00 34.92 2.69
523 527 1.670811 AGTGGTCGTGCTTCAACTTTG 59.329 47.619 0.00 0.00 0.00 2.77
524 528 2.038387 AGTGGTCGTGCTTCAACTTT 57.962 45.000 0.00 0.00 0.00 2.66
525 529 2.902705 TAGTGGTCGTGCTTCAACTT 57.097 45.000 0.00 0.00 0.00 2.66
526 530 4.737855 ATATAGTGGTCGTGCTTCAACT 57.262 40.909 0.00 0.00 0.00 3.16
527 531 4.630069 ACAATATAGTGGTCGTGCTTCAAC 59.370 41.667 5.03 0.00 0.00 3.18
528 532 4.629634 CACAATATAGTGGTCGTGCTTCAA 59.370 41.667 5.03 0.00 35.88 2.69
529 533 4.180817 CACAATATAGTGGTCGTGCTTCA 58.819 43.478 5.03 0.00 35.88 3.02
530 534 4.778842 CACAATATAGTGGTCGTGCTTC 57.221 45.455 5.03 0.00 35.88 3.86
540 544 5.072329 ACTCCCTCCATTCCACAATATAGTG 59.928 44.000 0.00 0.00 39.21 2.74
541 545 5.227593 ACTCCCTCCATTCCACAATATAGT 58.772 41.667 0.00 0.00 0.00 2.12
542 546 5.832539 ACTCCCTCCATTCCACAATATAG 57.167 43.478 0.00 0.00 0.00 1.31
543 547 6.390504 ACTACTCCCTCCATTCCACAATATA 58.609 40.000 0.00 0.00 0.00 0.86
544 548 5.227593 ACTACTCCCTCCATTCCACAATAT 58.772 41.667 0.00 0.00 0.00 1.28
545 549 4.631234 ACTACTCCCTCCATTCCACAATA 58.369 43.478 0.00 0.00 0.00 1.90
546 550 3.464828 ACTACTCCCTCCATTCCACAAT 58.535 45.455 0.00 0.00 0.00 2.71
547 551 2.915869 ACTACTCCCTCCATTCCACAA 58.084 47.619 0.00 0.00 0.00 3.33
548 552 2.642171 ACTACTCCCTCCATTCCACA 57.358 50.000 0.00 0.00 0.00 4.17
549 553 4.031611 ACTAACTACTCCCTCCATTCCAC 58.968 47.826 0.00 0.00 0.00 4.02
550 554 4.348020 ACTAACTACTCCCTCCATTCCA 57.652 45.455 0.00 0.00 0.00 3.53
551 555 6.997942 ATAACTAACTACTCCCTCCATTCC 57.002 41.667 0.00 0.00 0.00 3.01
554 558 9.629878 CGATATATAACTAACTACTCCCTCCAT 57.370 37.037 0.00 0.00 0.00 3.41
555 559 8.051535 CCGATATATAACTAACTACTCCCTCCA 58.948 40.741 0.00 0.00 0.00 3.86
556 560 7.013178 GCCGATATATAACTAACTACTCCCTCC 59.987 44.444 0.00 0.00 0.00 4.30
557 561 7.013178 GGCCGATATATAACTAACTACTCCCTC 59.987 44.444 0.00 0.00 0.00 4.30
558 562 6.832900 GGCCGATATATAACTAACTACTCCCT 59.167 42.308 0.00 0.00 0.00 4.20
559 563 6.238593 CGGCCGATATATAACTAACTACTCCC 60.239 46.154 24.07 0.00 0.00 4.30
560 564 6.317391 ACGGCCGATATATAACTAACTACTCC 59.683 42.308 35.90 0.00 0.00 3.85
561 565 7.313951 ACGGCCGATATATAACTAACTACTC 57.686 40.000 35.90 0.00 0.00 2.59
562 566 6.317391 GGACGGCCGATATATAACTAACTACT 59.683 42.308 35.90 0.91 0.00 2.57
563 567 6.317391 AGGACGGCCGATATATAACTAACTAC 59.683 42.308 35.90 4.06 39.96 2.73
564 568 6.418101 AGGACGGCCGATATATAACTAACTA 58.582 40.000 35.90 0.00 39.96 2.24
565 569 5.259632 AGGACGGCCGATATATAACTAACT 58.740 41.667 35.90 2.70 39.96 2.24
566 570 5.449725 GGAGGACGGCCGATATATAACTAAC 60.450 48.000 35.90 9.66 39.96 2.34
567 571 4.641989 GGAGGACGGCCGATATATAACTAA 59.358 45.833 35.90 0.00 39.96 2.24
568 572 4.202441 GGAGGACGGCCGATATATAACTA 58.798 47.826 35.90 0.00 39.96 2.24
569 573 3.022406 GGAGGACGGCCGATATATAACT 58.978 50.000 35.90 16.38 39.96 2.24
570 574 2.100418 GGGAGGACGGCCGATATATAAC 59.900 54.545 35.90 13.30 39.96 1.89
571 575 2.291735 TGGGAGGACGGCCGATATATAA 60.292 50.000 35.90 9.55 39.96 0.98
572 576 1.285667 TGGGAGGACGGCCGATATATA 59.714 52.381 35.90 9.43 39.96 0.86
573 577 0.040646 TGGGAGGACGGCCGATATAT 59.959 55.000 35.90 9.07 39.96 0.86
590 594 1.533625 TTCTCCCTGCAATTCGTTGG 58.466 50.000 0.00 0.00 0.00 3.77
591 595 3.012518 AGATTCTCCCTGCAATTCGTTG 58.987 45.455 0.00 0.00 0.00 4.10
621 625 1.943340 GATTGGAATCGGAAGTGAGGC 59.057 52.381 0.00 0.00 0.00 4.70
695 720 3.792684 AGGTCAGGTGGGAGTACTATACT 59.207 47.826 0.00 0.00 42.86 2.12
696 721 3.890147 CAGGTCAGGTGGGAGTACTATAC 59.110 52.174 0.00 0.00 0.00 1.47
697 722 3.690438 GCAGGTCAGGTGGGAGTACTATA 60.690 52.174 0.00 0.00 0.00 1.31
698 723 2.955461 GCAGGTCAGGTGGGAGTACTAT 60.955 54.545 0.00 0.00 0.00 2.12
699 724 1.618888 GCAGGTCAGGTGGGAGTACTA 60.619 57.143 0.00 0.00 0.00 1.82
700 725 0.905337 GCAGGTCAGGTGGGAGTACT 60.905 60.000 0.00 0.00 0.00 2.73
701 726 1.597461 GCAGGTCAGGTGGGAGTAC 59.403 63.158 0.00 0.00 0.00 2.73
845 872 6.912591 GGGAAAGCTGTCGATTTATAACAATG 59.087 38.462 0.00 0.00 0.00 2.82
859 887 2.677848 GGGGAGGGGAAAGCTGTC 59.322 66.667 0.00 0.00 0.00 3.51
879 907 6.473397 TTTTGGATGTTGTTGTTGTTGTTC 57.527 33.333 0.00 0.00 0.00 3.18
880 908 6.093357 GGATTTTGGATGTTGTTGTTGTTGTT 59.907 34.615 0.00 0.00 0.00 2.83
881 909 5.584251 GGATTTTGGATGTTGTTGTTGTTGT 59.416 36.000 0.00 0.00 0.00 3.32
902 930 1.970640 GTTCTTGGCTTGGGTTTGGAT 59.029 47.619 0.00 0.00 0.00 3.41
903 931 1.342474 TGTTCTTGGCTTGGGTTTGGA 60.342 47.619 0.00 0.00 0.00 3.53
911 950 0.317269 CAGCGTGTGTTCTTGGCTTG 60.317 55.000 0.00 0.00 0.00 4.01
914 953 3.420943 ACAGCGTGTGTTCTTGGC 58.579 55.556 0.00 0.00 34.94 4.52
922 961 2.138320 ACAGATTCAGAACAGCGTGTG 58.862 47.619 0.00 0.00 0.00 3.82
927 966 3.603532 TGATGGACAGATTCAGAACAGC 58.396 45.455 0.00 0.00 0.00 4.40
940 979 0.532573 GAAGCGGAGACTGATGGACA 59.467 55.000 0.00 0.00 0.00 4.02
941 980 0.179097 GGAAGCGGAGACTGATGGAC 60.179 60.000 0.00 0.00 0.00 4.02
957 996 0.036388 GGCTGGACGAATCAGTGGAA 60.036 55.000 0.00 0.00 34.89 3.53
974 1013 1.639280 CAGCTCTTCTTCTTCTCGGC 58.361 55.000 0.00 0.00 0.00 5.54
977 1016 3.591196 TCTGCAGCTCTTCTTCTTCTC 57.409 47.619 9.47 0.00 0.00 2.87
993 1032 1.666700 CAGAGCTTGCTCATCTTCTGC 59.333 52.381 22.44 0.00 0.00 4.26
1053 1097 6.127563 ACAAATTCATCAATCTGCTGCACATA 60.128 34.615 0.00 0.00 0.00 2.29
1054 1098 5.109210 CAAATTCATCAATCTGCTGCACAT 58.891 37.500 0.00 0.00 0.00 3.21
1055 1099 4.021807 ACAAATTCATCAATCTGCTGCACA 60.022 37.500 0.00 0.00 0.00 4.57
1057 1101 4.794278 ACAAATTCATCAATCTGCTGCA 57.206 36.364 0.88 0.88 0.00 4.41
1058 1102 6.401796 GGAAAACAAATTCATCAATCTGCTGC 60.402 38.462 0.00 0.00 0.00 5.25
1059 1103 6.091713 GGGAAAACAAATTCATCAATCTGCTG 59.908 38.462 0.00 0.00 0.00 4.41
1060 1104 6.013984 AGGGAAAACAAATTCATCAATCTGCT 60.014 34.615 0.00 0.00 0.00 4.24
1061 1105 6.168389 AGGGAAAACAAATTCATCAATCTGC 58.832 36.000 0.00 0.00 0.00 4.26
1062 1106 7.062605 CGAAGGGAAAACAAATTCATCAATCTG 59.937 37.037 0.00 0.00 0.00 2.90
1063 1107 7.092716 CGAAGGGAAAACAAATTCATCAATCT 58.907 34.615 0.00 0.00 0.00 2.40
1064 1108 7.281991 CGAAGGGAAAACAAATTCATCAATC 57.718 36.000 0.00 0.00 0.00 2.67
1132 1185 0.745128 GCAGCAGCAGAGAAGAGCAT 60.745 55.000 0.00 0.00 41.58 3.79
1315 1374 3.062042 GCTTGGTTGATTTTCTTGCTGG 58.938 45.455 0.00 0.00 0.00 4.85
1317 1376 3.638160 TGAGCTTGGTTGATTTTCTTGCT 59.362 39.130 0.00 0.00 0.00 3.91
1318 1377 3.981211 TGAGCTTGGTTGATTTTCTTGC 58.019 40.909 0.00 0.00 0.00 4.01
1323 1382 2.027837 GGCCATGAGCTTGGTTGATTTT 60.028 45.455 6.32 0.00 43.05 1.82
1355 1414 4.895668 ACATCAAAACCATGGCAGAAAT 57.104 36.364 13.04 0.00 0.00 2.17
1358 1417 4.021544 GGTTAACATCAAAACCATGGCAGA 60.022 41.667 13.04 5.00 43.84 4.26
1359 1418 4.244862 GGTTAACATCAAAACCATGGCAG 58.755 43.478 13.04 0.00 43.84 4.85
1361 1420 3.249917 CGGTTAACATCAAAACCATGGC 58.750 45.455 13.04 0.00 44.49 4.40
1362 1421 4.233789 CACGGTTAACATCAAAACCATGG 58.766 43.478 11.19 11.19 44.49 3.66
1364 1423 3.892588 ACCACGGTTAACATCAAAACCAT 59.107 39.130 8.10 0.00 44.49 3.55
1365 1424 3.066900 CACCACGGTTAACATCAAAACCA 59.933 43.478 8.10 0.00 44.49 3.67
1366 1425 3.551250 CCACCACGGTTAACATCAAAACC 60.551 47.826 8.10 0.00 41.48 3.27
1367 1426 3.634283 CCACCACGGTTAACATCAAAAC 58.366 45.455 8.10 0.00 0.00 2.43
1368 1427 2.034812 GCCACCACGGTTAACATCAAAA 59.965 45.455 8.10 0.00 36.97 2.44
1369 1428 1.609555 GCCACCACGGTTAACATCAAA 59.390 47.619 8.10 0.00 36.97 2.69
1370 1429 1.202830 AGCCACCACGGTTAACATCAA 60.203 47.619 8.10 0.00 36.97 2.57
1371 1430 0.398696 AGCCACCACGGTTAACATCA 59.601 50.000 8.10 0.00 36.97 3.07
1372 1431 1.530323 AAGCCACCACGGTTAACATC 58.470 50.000 8.10 0.00 36.97 3.06
1373 1432 2.863132 TAAGCCACCACGGTTAACAT 57.137 45.000 8.10 0.00 36.97 2.71
1374 1433 2.863132 ATAAGCCACCACGGTTAACA 57.137 45.000 8.10 0.00 36.97 2.41
1375 1434 3.340928 AGAATAAGCCACCACGGTTAAC 58.659 45.455 0.00 0.00 36.97 2.01
1376 1435 3.706600 AGAATAAGCCACCACGGTTAA 57.293 42.857 0.00 0.00 36.97 2.01
1377 1436 3.262405 AGAAGAATAAGCCACCACGGTTA 59.738 43.478 0.00 0.00 36.97 2.85
1378 1437 2.039879 AGAAGAATAAGCCACCACGGTT 59.960 45.455 0.00 0.00 36.97 4.44
1379 1438 1.628846 AGAAGAATAAGCCACCACGGT 59.371 47.619 0.00 0.00 36.97 4.83
1380 1439 2.403252 AGAAGAATAAGCCACCACGG 57.597 50.000 0.00 0.00 38.11 4.94
1381 1440 3.600388 AGAAGAAGAATAAGCCACCACG 58.400 45.455 0.00 0.00 0.00 4.94
1569 1631 2.358737 CTTGCCGCCGTTCTCCTT 60.359 61.111 0.00 0.00 0.00 3.36
1607 1678 0.250513 CGTTCTCCTTCTCCTTGGGG 59.749 60.000 0.00 0.00 0.00 4.96
1651 1722 1.302511 TGGTCTTTCTTGGGAGCGC 60.303 57.895 0.00 0.00 33.30 5.92
1676 1747 2.771943 CTCTGGTTACTGCCCCAATCTA 59.228 50.000 0.00 0.00 0.00 1.98
1684 1755 1.139853 CAGGGATCTCTGGTTACTGCC 59.860 57.143 15.38 0.00 0.00 4.85
1703 1774 2.436646 GCCAAGAAGCTAGCCGCA 60.437 61.111 12.13 0.00 42.61 5.69
1706 1777 0.807496 CACAAGCCAAGAAGCTAGCC 59.193 55.000 12.13 0.00 44.11 3.93
1734 1809 6.980397 ACAAGCTAAAATCTCAAACAAACCAG 59.020 34.615 0.00 0.00 0.00 4.00
1763 1838 5.817816 GGACAAGACATGTAATACTCCCAAG 59.182 44.000 0.00 0.00 44.12 3.61
1794 1871 6.392625 TCATCTATGGAGTGCTAGTACAAC 57.607 41.667 13.75 5.92 0.00 3.32
1803 1880 0.036022 GGGCCTCATCTATGGAGTGC 59.964 60.000 0.84 0.00 0.00 4.40
1804 1881 1.622811 GAGGGCCTCATCTATGGAGTG 59.377 57.143 28.55 0.00 0.00 3.51
1813 1890 2.514824 GCAACCGAGGGCCTCATC 60.515 66.667 31.69 12.23 0.00 2.92
1871 1952 9.561069 GGTACATTTTTCTGGACAGATATATGT 57.439 33.333 21.84 21.84 40.73 2.29
1886 1967 4.394920 TGCTCCAATCTCGGTACATTTTTC 59.605 41.667 0.00 0.00 0.00 2.29
1897 1978 2.166459 TCTGGTTACTGCTCCAATCTCG 59.834 50.000 0.00 0.00 33.06 4.04
1970 2054 7.441760 ACATCAAATCAGCTAGCTAAATCTCAG 59.558 37.037 18.86 7.76 0.00 3.35
2012 2096 9.565213 CTTATGAAAAGTTCAACTTGATCCATC 57.435 33.333 2.78 0.00 43.95 3.51
2054 2140 1.115467 CAGAGGTAGTGGCCTACTGG 58.885 60.000 15.55 0.00 42.71 4.00
2055 2141 1.853963 ACAGAGGTAGTGGCCTACTG 58.146 55.000 15.55 10.81 42.71 2.74
2056 2142 2.310945 TGTACAGAGGTAGTGGCCTACT 59.689 50.000 3.32 8.73 42.71 2.57
2057 2143 2.426381 GTGTACAGAGGTAGTGGCCTAC 59.574 54.545 3.32 0.00 42.44 3.18
2058 2144 2.310945 AGTGTACAGAGGTAGTGGCCTA 59.689 50.000 3.32 0.00 39.34 3.93
2087 2173 0.038709 TGCGGTACTGCAAAAATGCC 60.039 50.000 26.91 0.00 43.02 4.40
2088 2174 3.488048 TGCGGTACTGCAAAAATGC 57.512 47.368 26.91 0.00 43.02 3.56
2103 2198 5.691815 TCCCTCTTAAATAACGTTTTTGCG 58.308 37.500 5.91 3.71 37.94 4.85
2118 2213 9.656323 TCTTAGCTAATCAACTATTCCCTCTTA 57.344 33.333 6.64 0.00 0.00 2.10
2121 2216 9.614792 TTTTCTTAGCTAATCAACTATTCCCTC 57.385 33.333 6.64 0.00 0.00 4.30
2186 2282 2.689646 GAAGTTGACTGCCTCTACACC 58.310 52.381 0.00 0.00 0.00 4.16
2234 2458 8.423906 TTTGGCCATTTTAGTGTAATTTCCTA 57.576 30.769 6.09 0.00 0.00 2.94
2237 2461 7.821846 TGGATTTGGCCATTTTAGTGTAATTTC 59.178 33.333 6.09 0.00 31.66 2.17
2238 2462 7.684529 TGGATTTGGCCATTTTAGTGTAATTT 58.315 30.769 6.09 0.00 31.66 1.82
2269 2494 3.512033 AAGCATCTCGGAGTGTACTTC 57.488 47.619 4.69 0.00 0.00 3.01
2270 2495 4.142138 CCTTAAGCATCTCGGAGTGTACTT 60.142 45.833 4.69 7.53 0.00 2.24
2271 2496 3.381908 CCTTAAGCATCTCGGAGTGTACT 59.618 47.826 4.69 0.00 0.00 2.73
2272 2497 3.380637 TCCTTAAGCATCTCGGAGTGTAC 59.619 47.826 4.69 0.00 0.00 2.90
2273 2498 3.628008 TCCTTAAGCATCTCGGAGTGTA 58.372 45.455 4.69 0.00 0.00 2.90
2274 2499 2.457598 TCCTTAAGCATCTCGGAGTGT 58.542 47.619 4.69 0.00 0.00 3.55
2275 2500 3.526931 TTCCTTAAGCATCTCGGAGTG 57.473 47.619 4.69 4.29 0.00 3.51
2276 2501 4.762289 ATTTCCTTAAGCATCTCGGAGT 57.238 40.909 4.69 0.00 0.00 3.85
2277 2502 4.260948 GCAATTTCCTTAAGCATCTCGGAG 60.261 45.833 0.00 0.00 0.00 4.63
2280 2505 4.095483 AGTGCAATTTCCTTAAGCATCTCG 59.905 41.667 0.00 0.00 37.56 4.04
2290 2515 5.003160 GGCCATTTTTAGTGCAATTTCCTT 58.997 37.500 0.00 0.00 0.00 3.36
2292 2517 4.322567 TGGCCATTTTTAGTGCAATTTCC 58.677 39.130 0.00 0.00 0.00 3.13
2294 2519 6.072008 GGATTTGGCCATTTTTAGTGCAATTT 60.072 34.615 6.09 0.00 0.00 1.82
2299 2524 3.934579 CTGGATTTGGCCATTTTTAGTGC 59.065 43.478 6.09 0.00 37.30 4.40
2337 2562 8.472683 TTTAATGTAATTTTCTGGGCATTTCG 57.527 30.769 0.00 0.00 37.87 3.46
2345 2570 8.558973 TGGCCATTTTTAATGTAATTTTCTGG 57.441 30.769 0.00 0.00 37.87 3.86
2358 2584 9.034800 ACTGAATCTAGAATTGGCCATTTTTAA 57.965 29.630 6.09 0.00 0.00 1.52
2365 2591 3.696051 GCAACTGAATCTAGAATTGGCCA 59.304 43.478 0.00 0.00 0.00 5.36
2383 2609 5.702865 TGAAATCAGCTTTATCAGTGCAAC 58.297 37.500 0.00 0.00 0.00 4.17
2386 2612 7.167136 GCTATTTGAAATCAGCTTTATCAGTGC 59.833 37.037 0.00 0.00 0.00 4.40
2404 2630 5.827797 AGTCTGGAAACAAACAGCTATTTGA 59.172 36.000 23.71 0.05 41.28 2.69
2422 2648 4.109050 GCAAAGTCGAATCTAGAGTCTGG 58.891 47.826 17.40 0.00 0.00 3.86
2425 2651 4.109050 CTGGCAAAGTCGAATCTAGAGTC 58.891 47.826 10.17 10.17 0.00 3.36
2427 2653 2.863137 GCTGGCAAAGTCGAATCTAGAG 59.137 50.000 0.00 0.00 0.00 2.43
2441 2667 3.765511 AGCTATTTGAAATCAGCTGGCAA 59.234 39.130 15.13 10.57 42.60 4.52
2454 2680 6.899393 ATCTGAAAACAACCAGCTATTTGA 57.101 33.333 12.31 0.00 0.00 2.69
2479 2705 1.406887 GCCCAGTAAAGCCGAATCTGA 60.407 52.381 0.00 0.00 0.00 3.27
2487 2713 1.960689 TCAACTTTGCCCAGTAAAGCC 59.039 47.619 5.26 0.00 38.47 4.35
2488 2714 3.726291 TTCAACTTTGCCCAGTAAAGC 57.274 42.857 5.26 0.00 38.47 3.51
2492 2718 3.244422 ACGAGATTCAACTTTGCCCAGTA 60.244 43.478 0.00 0.00 0.00 2.74
2521 2747 4.700213 AGGTCGTATTTGTTTGGATTCTGG 59.300 41.667 0.00 0.00 0.00 3.86
2524 2750 7.333672 AGTCTAAGGTCGTATTTGTTTGGATTC 59.666 37.037 0.00 0.00 0.00 2.52
2537 2763 3.508793 CCAAGTGGAAGTCTAAGGTCGTA 59.491 47.826 0.00 0.00 37.39 3.43
2555 2781 4.141287 TGGTTTGAAGGTGTATGTCCAAG 58.859 43.478 0.00 0.00 0.00 3.61
2567 2793 0.804989 GGACGCAGATGGTTTGAAGG 59.195 55.000 0.00 0.00 0.00 3.46
2587 2813 1.420430 ATAACATCCACGGTCCGGAT 58.580 50.000 17.28 6.72 44.35 4.18
2595 2821 0.506932 CGGCGCTAATAACATCCACG 59.493 55.000 7.64 0.00 0.00 4.94
2596 2822 1.860676 TCGGCGCTAATAACATCCAC 58.139 50.000 7.64 0.00 0.00 4.02
2597 2823 2.159014 AGTTCGGCGCTAATAACATCCA 60.159 45.455 7.64 0.00 0.00 3.41
2599 2825 2.348591 GCAGTTCGGCGCTAATAACATC 60.349 50.000 7.64 0.00 0.00 3.06
2601 2827 1.003851 GCAGTTCGGCGCTAATAACA 58.996 50.000 7.64 0.00 0.00 2.41
2602 2828 1.003851 TGCAGTTCGGCGCTAATAAC 58.996 50.000 7.64 6.97 36.28 1.89
2604 2830 0.529773 CCTGCAGTTCGGCGCTAATA 60.530 55.000 13.81 0.00 36.28 0.98
2605 2831 1.815421 CCTGCAGTTCGGCGCTAAT 60.815 57.895 13.81 0.00 36.28 1.73
2606 2832 2.434185 CCTGCAGTTCGGCGCTAA 60.434 61.111 13.81 0.00 36.28 3.09
2607 2833 4.451150 CCCTGCAGTTCGGCGCTA 62.451 66.667 13.81 0.00 36.28 4.26
2611 2837 4.643387 ACCACCCTGCAGTTCGGC 62.643 66.667 13.81 0.00 0.00 5.54
2612 2838 1.966451 GAACCACCCTGCAGTTCGG 60.966 63.158 13.81 11.70 31.45 4.30
2613 2839 1.071471 AGAACCACCCTGCAGTTCG 59.929 57.895 13.81 1.87 43.65 3.95
2614 2840 0.108585 TCAGAACCACCCTGCAGTTC 59.891 55.000 13.81 10.19 40.14 3.01
2615 2841 0.179018 GTCAGAACCACCCTGCAGTT 60.179 55.000 13.81 0.00 0.00 3.16
2616 2842 1.344953 TGTCAGAACCACCCTGCAGT 61.345 55.000 13.81 0.00 0.00 4.40
2617 2843 0.886490 GTGTCAGAACCACCCTGCAG 60.886 60.000 6.78 6.78 0.00 4.41
2618 2844 1.148273 GTGTCAGAACCACCCTGCA 59.852 57.895 0.00 0.00 0.00 4.41
2619 2845 0.250901 ATGTGTCAGAACCACCCTGC 60.251 55.000 0.00 0.00 31.71 4.85
2620 2846 2.276732 AATGTGTCAGAACCACCCTG 57.723 50.000 0.00 0.00 31.71 4.45
2621 2847 3.312736 AAAATGTGTCAGAACCACCCT 57.687 42.857 0.00 0.00 31.71 4.34
2641 2867 7.492669 TCATGCTTATTTTCGGTTTGTGAAAAA 59.507 29.630 5.15 0.00 45.38 1.94
2642 2868 6.980978 TCATGCTTATTTTCGGTTTGTGAAAA 59.019 30.769 3.67 3.67 46.04 2.29
2643 2869 6.507900 TCATGCTTATTTTCGGTTTGTGAAA 58.492 32.000 0.00 0.00 33.73 2.69
2644 2870 6.078202 TCATGCTTATTTTCGGTTTGTGAA 57.922 33.333 0.00 0.00 0.00 3.18
2645 2871 5.335583 CCTCATGCTTATTTTCGGTTTGTGA 60.336 40.000 0.00 0.00 0.00 3.58
2646 2872 4.858692 CCTCATGCTTATTTTCGGTTTGTG 59.141 41.667 0.00 0.00 0.00 3.33
2647 2873 4.764823 TCCTCATGCTTATTTTCGGTTTGT 59.235 37.500 0.00 0.00 0.00 2.83
2648 2874 5.095490 GTCCTCATGCTTATTTTCGGTTTG 58.905 41.667 0.00 0.00 0.00 2.93
2649 2875 5.010282 AGTCCTCATGCTTATTTTCGGTTT 58.990 37.500 0.00 0.00 0.00 3.27
2650 2876 4.589908 AGTCCTCATGCTTATTTTCGGTT 58.410 39.130 0.00 0.00 0.00 4.44
2651 2877 4.222124 AGTCCTCATGCTTATTTTCGGT 57.778 40.909 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.