>input_sequence_72131
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---ATGAGCAAGCTCTGGACCATCCTCACCCACCTCCACACCCTCGCAGGGTATGTTATGTGCAGCAGATTGATGAATTT
GTTTTCCCTTCGGTTCTTGTTTGTGCAGTTCTTGCTGAGCTCAACTGA---------CCATTTCA------TGCTCTTCT
CTGCTGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCGCTGTACGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGC
TGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATC
TACTGGTAATTAACCAGCAAGAAAATCAACCAAGCTCATGGCCGCTTTTCTTGATTTCTGCCATGGTTTTGATGTTAACC
GTGGTGGCTTATTCTTCTTCTCACTCTCAGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGC
TGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCAC
CCCGGCAGCGGCATCAGCAGC---AGCAAGAAGGAGAACGGCGGC---------AAGTCGTCCTCGCCGTCGACGTCCCC
CAAGGAGAAGGAGAACGCCAAGAGCAGGTTCCTCTCCTTCGGCGCTCCCAAGAAAGACCACTGA----------------
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>chr5A_1_TraesCS5A01G063100
CACAAAAAAGTGTTCTCATCACGGGTG--GGGTGAGGTGAGCCGATGACTCGGTTTCCGGTGAACAATCCCCAC-TTTGT
GCCCAACAAAAGCATTCTCATTTTCGCGGGTGGGGTGAGGCGAGCTGATAGCTCGGTTTCATCAGGTGAGCAATCTCCAC
CGAGCATTGTTTTGCTTGGTGCCAACTCCACTCTCCACATGTCTCTTCACTGACATTTGAACTACAATTTGTTAGAGAAA
CCCTGAGTTGATATCTCATTAAGAAGATGGCCTTTAGTTAGTAGGAGCAGCCTAGATGTACAACCAACTCACTAACCAAA
CCCTGAAGCAGCAAAAAAATACTCCCTCCATTTCAAAATATAGTGCTCCTGCATTTTTCGAGGTTCAACTTTGACCATAA
ATTTAACCAACGAGATCAACTGCGGCGGAAGAAAAAATTATATAATTGAAAACTTCTTTCGAATACGAATTCACTGATAT
AATTTTTGCTCCCGCTACAATCGGTCTTGATAGTTAAATTTACGGTCAAAGTTGAAGCACGACCACTATATTGTGGAATG
GAGGGAGTAGTTAGTTATATATCGGCCGTCCTCCCAACGAATTGCAGGGAGAATCTGCCTCTCGGCCTCACTTCCGATTC
C---------------------AATCCAAAGAAAATAAAAAAACCCTCCGGAGAAGATTTCGATGCATCACAAAGTAGGA
GTATAGTACTCCCACCTGACC-TGCCGACCTGGTCGTGGTCGGTGCTCCATCCTGTCGCCACGTGTACTGTCCCCATCAA
ACGCGTAGAC-AAAAGAAGCCCCTCCTTCAGTGGCGCCGCGCCATGTGTCCTCCACTCCGCCCGGCCACGGCA-TTGTTA
TAAATCGACAGCTTTCCCCTCCCCCGGAACAACAACAACAACATCCAAAAT-----------CCAAACCCAAGCCAAGAA
CACACGCTGTTCTGAATCTGTCCATCAGTCTCCGCTTCCACTGATTCGTCCAGCCGAGAAGAAGAAGAGCTGC--A---G
AAGATGAGCAAGCTCTGGACCATCCTCACCCACCTCCACACCCTCGCAGGGTATGTTATGTGCAGCAGATTGATGAATTT
GTTTTCCCTTCGGTTCTTGTTTGTGCAGTTCTTGCTGAGCTCAACTGA---------CCATTTCA------TGCTCTTCT
CTGCTGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCGCTGTACGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGC
TGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATC
TACTGGTAATTAACCAGCAAGAAAATCAACCAAGCTCATGGCCGCTTTTCTTGATTTCTGCCATGGTTTTGATGTTAACC
GTGGTGGCTTATTCTTCTTCTCACTCTCAGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGC
TGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCAC
CCCGGCAGCGGCATCAGCAGC---AGCAAGAAGGAGAACGGCGGC---------AAGTCGTCCTCGCCGTCGACGTCCCC
CAAGGAGAAGGAGAACGCCAAGAGCAGGTTCCTCTCCTTCGGCGCTCCCAAGAAAGACCACTGAAGTAGATTGGGGCAGT
AACCAGAGATCCCTGCGGCTAGCTTCTTGGCTTGTGGTG----TTTTTCTGGTTTGTTTGAGATTTTAGCTTGTGGTCTT
GGGAGTATT-ACATGTCTTGTCC-AAAAAAGTTGTACTAGCACTCCATAGATGAGGCCCTCGGTTGCAGGCTAGCTAGAT
----GGTGGCTTGTGGTGTTGTAGTATTATTACATATATCTGTCCAGAAAAATGTACC---GAGATTGGAGCAGTAACCA
GAGATTTCATCTCATCTCATCCCTCCGGCTAAGCTAGCTTGTGGTGTTCATTTCTGAGATTTAGCTAGCTGATTTGATGT
GAAGCTTACACATTGG--ATGGATCAAGTTGAACTTTTCATAAGACGACACATGTAAGGCCAGTAGGCCACTACCTCTGT
ACACTAATATACGGCATTTTTGCAGT---------ACCGCAAAAACGTTATTTAAGAGGGAATAGTTGATTAGCTAAGAA
AATATTTAGACCCAAAATAAACGA-TATACCGTCAATTCTTGGTGTAGA-------------------------------
--------------------------------------------------------------------------------
-----------------GGCAGTCAACTTCGTCACCGAAGTACACTCTGAGATGCTTTAGGAAATTACACT-AAAATGGC
CAAATCCAGAACCGAAGTACACTCCGAGATGCTTAAGGAAATTGCACTAAAAATGGCCAAATCCAGAACCGAAGTACACT
CCGAAATGCC-CAGAAAATTACATTAAAAATGGCCAATTCTAGATTCAGTTGCACTGATAAAGCTGATTTCAAATAGCTG
TTTGTTTCCAGACTCTAGATTCGACTTTGCCAGCTGATTTCAAATAGCTGGTTGTTTTCAGATTTCAGATTCGGCTTTAC
TGGGCAAAGTTGAATCTCGTCCCATACCAGAATCCAAACAAATACGACCTTAGACTTCCACTTGGACATACACCTTCAAA
CCATCTGCGTCCATCCGGACCGTGGATGTTATTAGCGCCGAACTGCAGGGTGGTTCTGACACATTTTTTTTCACAAACCG
AAAATAAGCATGAGGACTT
>chr5D_3
AAAAA---AGTGTTCTCATCACGGATGATGGGTGAGGTGAGCTGATGACTCGGTTTCCGGTGAACCATCTCCAC-TTTGT
GCCCAACAAAAGTGTTCTCATCA---CGGGTGGGGTGAGGTGAGCCGATGGCTCGGTTTCA---GGTGAGCAATCTCCAC
CGAGCATTGTTGTGCTTGGTGCCAACTCCAC-------ATGTCTCTTCGATGTCATTTTAACTACTCCCT-AGCCATTGT
CTTCCACAAAACCTTAGATTCAGCACAACACGCCAATAATACTGGAGGGCTTGATCTGGTT-------------------
--CTGAAGCACCAAAAAAACAGTTACTC----------------------------------------------------
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-----------------TATATCGGCCGTCCTCATAACGTATTGCAGGAGGAATCTGCCTCTTGACCTGATTTACATTTC
CTAGATCTCTCACAGTAGATCCAATCCAAAGATAGTAT-AAAAACCTCCGGAGAAGATTTCGATGCATCACAAAGTAG--
------TACTCCCACCTGACC-TGCCGACCTGGTCGTGGTCGGTGCTCCATCCTGTCGCCACGTGTACTGTCCCCATCAA
ACGCGTAGACAAAAAGAAGCCCCTCCTTCAGTGGCGCCGCGCCATGTGTCCTCCACTCCGCCCGGCCACGGTATTTGTTA
TAAATCCACAGCTTTCCCCTCCCCCG---CAACAACAACAACATCCAAATCCAAATCCAAACCCAAACCAAAACCAAGAA
GACACACTGTTCTC------TCCATCAGTCTCCGCCTCAACTGATTCGTCCAACCAAGAAGAAGAAGAGCTACAGA---G
AAGATGAGCAAGCTCTGGACCATCCTCACCCACCTCCACACCCTCGCAGGGTATGTGCAGAT-----------TGAATCT
TTTTCTTGTTCGGTTCTTGTTCATAG---------TGAGCTCGACTGA---------CGGGTGCGGCCATTTGCTCGTGT
TCTCTGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCGTTGTATGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGC
TGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATC
TACTGGTAATTAAACGACAGGCAAATCAAGCAAGTCCATGGCCGCTTTTCTTGTTTGATTTCT-----------------
GTGGTGGCTTACTCTGCTTCTCACTCTCAGGATACCGATCTGGTACGAGCTGAAGCTACTGTTCCTGGCGTGGCTGGCGC
TGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCAC
CCCGGCAGCGGCATCAGCAGCGGCAGCAAGGAGGAGAACGGCGGCAAGGTCGACAAGTCGTCCTCGCCGTCGACGTCTCC
CAAGGAGAAGGAGAACGCCAAGAGCAGGTTCCTCTCCTTCGTCGCTCCCAAGAAAGACCACTGAAGGAGATTGGAGCAGC
AACCAGAGATCCCAGCAGCTAGCTTCTTGGCTTGTGGTG----TTTTCTTGGTTTGTTTGAGATTTTAGATTGTGGTGTT
GAGAGTATTTACATATCTTGTCAGAAAAAAATTGTACTACGACTCCATATATGAGGCCCTCGGTTGCAGGCTAGCTAGAT
GGTGGGTGGCTTGTGGTGTTGTAGTATTA---C--ATATCTGTCCAAAAAAATGTAGTACTGAGATTGGAGCAGTAACCA
GAGATTTCATCTCATTTCGTCCCTTCGGCTAAGCTAGCTTGTGATGTTCATTCTTGAGATTTGGCTAGCTGATTTGATGT
GAAGCTTACACATATAGAATAGATCAAGTTGAACTTTTCATAAGACGGCAGATGTA--------AGGCCACTACCTCTGT
ACACTAATATACA-CATTTTTGCAGTTTAATTTGAACTGCAAAAACGTTATTAAATACGGAATAGTTGATTAGCTAAGAA
AATATTTAGACCCAAAATAAACGAGTATACCATCAATTCTTAGTGTAGAAAGCCTTTAACTTAGGCCCTGTTTGTTTCAG
CTTGCTTGATCCAAGTGTGGATTTGCTTTAGTGGCAGTCAACTTTGTCACCGAAGTACGTTTCAGCTTGCTTGATCCACA
TGTGGATTTGCTTTAGTGGCAGTCAACTTTGTCACCGAAGTACACTCTGAGATGCTTCAGATAATTACACTAAAAATGGC
CAAATCCAGAACC---------TCTGAGATGCTTCAAGTAATTACACTAAAAATGGCCAAATCCAGAACCGAAGTACACT
CTGAGATGCTTCAGGAAATTACAATAAAAACGGCCAAATCTAGATTCAATTTCACTGATAAAGCTGATTCCAAATAGCTG
TTTGTTTTCATATTCTAGATTCGACTCTGCCAGCTGATTCCAAATAGCTGGTTGTTTTCAGATTCCAGATTCA-CTTCAC
TGGGCAAAGTTGAATCTCGTCCCATAACATAATCCAAACAAACACAGACTTAGACTTCCATTTGGACATACATCTTCAAA
CCACCTGCATCCGTCCGGACGTGGAAGTTAT-------------------------------------------------
-------------------
>chr5B_4
---AAAAAAGTGTTCTCATCACGGGTG--GGGTGAGGTGAGCTGATGACTCGGTTTCCGGTGAACCATCTCCACTTTTGT
GCCCAACAAAAGCATCCTCATTTTCGCGGGTGGGGTGAGGTGAGCCGATGGCTCGGTTTCATCAGGTGAGCAATCTCCAC
CGAGCGTTGTTTTGCTTGGTGCCAACTCCAC-------ATGCCTCTTCGCTGTCATTTTAACTGCTCGCTTAGCCATTGT
CTTCCACAAAACCTTAGATTCAGCACAACACGTCAAAAATACTTGA-GGCTTGATCTGGTT-------------------
--CTTAAGCACCAAAAAAACAGTTACTC----------------------------------------------------
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-----------------TATATCGGCCGTCCTGATAACGAGTTGCAAGAAGAATCTGCCGCTTGACCTCACTTCCGTTTC
CTAGATCTCTCGCAGTAGATCCAAAGA--------TAT-AAAACCCTCCGGAGAAGATTTCGATGCATCACAAAGTAG--
------TGCTCCCACCTGACCTTGCCGACCTGGTCGTGGTCGGTGCTCCATCTCGTCGCCACGTGTACTGTCCCCATCAA
ACGCGTAGACAAAAAAAAGCCCCTCCTTCATTGGCGCCGCGCCATGTGTCCTCCACTCCGCCCGGCCACGGTA-TTGTTA
TAAATCCATAGCTTTCCCCTT-CCCG---GAACAACAACAACATCCAAATCCAAATCCAA-----------------GAA
TACGCACTGTTCTC------TCCATCAGTCTCCGCCTCCACTGATTCGTCCAACCAAGAAGAAGAAGAGCTACAGAAGAG
AAGATGAGCAAGCTCTGGACGATCCTCACCCACCTCCACACCCTCGCAGGGTATGTGCAGAT-----------TGAATTT
GGTTTCCCTTCGGTTCTTGTTTGTGCAGTTCTTGCCGAGCTCAACTGCCGCGTGCGGCCATTTGG------TGTTGTTCT
CTGTTGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCCCTGTATGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGC
TGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATC
TACTGGTAATTAAACGACAACCAAATCAAGCAAGCTCATGGCTGCTTTTCTTATTTGATTTCT-----------------
GTGGTGGTTTATTCTTCTTCTTGTTCTCAGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGC
TGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCAC
CCCGGCAGCGGCATCGGCAGC---A------AGGAGAACGGCTGCAAGGTCGACAAGTCGTCCTCGCCGTCGACGTCTCC
CAAGGAGAAGGAGAGCGCCAAGAGCAGGTTCCTCTCCTTCGTCACTCCCAAGAAAGACCACTGAGTGAGATTGGAGCAGC
AACCAGAGATCCCAGCAGCTAGCTTCTTGGCTTCTGTTTTTTTTTTTTTTGGTTTCTTTGAGATTTTAGCTTGTGGTGCT
GGAGTA--TTACATATCTTGTCCAAAAAATTTGTACTAT-GACTCCATATATGAGGCCCTCGGTTGCAGGCTAGCTAGAT
----GGTGGCTTGTGGCGTTGTAGTATTA---CATATATCTGTCCAAAAAAATGTACTACTGAGATTGGAGCAGTAACCA
GAGATTTCATCTCATCT-ATCCCTTCGGCTAAGCTAGCTTGTGGTGTTCATTTTTGAGTTTTAGCTAGCTGATTTGACGT
GAAGCTTAAAAATTGAA-ATGGACCAAGTTGAATTTCTCATAAGATAGCAGATGTA--------AGGCCAG---------
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>SNPs
S-S---------------------------------------S----------------------S---S----------
----------------------------------------S----S---S------------------------------
-------------------------------SSSSSSS----------S---S-----S------SSSS-SSSSS-SSSS
-SSSS-SSSS-SS-SSS---S--S-S-SSS-S-SS-SSSSSSS----SSSSSS-SS--SSSSSSSSSSSSSSSSSSSSSS
SS--------S--------S-S-SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS----------------SS-------------S-------------S-S-----------S---
--------------------------------S-S--SS---------------------------------------SS
SSSSSS--------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
------S-------------------SSS--------------------SS------------------S--S-------
S----S-------SSSSSSS---------------S----------------S--S---------------S--------
--------------------------------------------------------SSS-SSSSSSSSSSSSS-------
----------------------------------------------------------------S---------------
---------------------------------------------S----------------------------------
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-------------S-SS----S-------S-----------------------S--SS-SS-SSSSSSSSSSSSSSSSSS
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------------------------------S----------------------------------------------S--
-----------------------------------------S------------------------S-------S----S
-------------S--S-------------------------------S----------------------------S--
--------------S---------------S--------SS--------S------------------------------
-----------------------------SSS--------------S----------S----------------------
------------------------S----------------------------S--------------------------
---------------S-------------------------------S--S-----SSSSSSSS----------------
------------SS-----------------------S--------------S--S-S----------------------
-------------------------------S---------S--------------------------------------
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-----------------------------S---------------------------S--SS------------------
-------------SSSSSSSSS--S---------S-S-S----S------------------------------------
-S--S----S----S--------S------S------S----------S--S-----------------S----------
-------S--S-S-------------S------------S------------------------S-------SS---S--
--------------------------S--S------------S--SSS------------S-----------S-------
---S----S---S-------SSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_436
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----------------CAACTGCGGCGGAAGAAAAA--------------------------------------------
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>reverse_1880
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---------------------------------------GCACTCCATAGATGAGGCCC---------------------
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