Multiple sequence alignment - TraesCS5A01G027300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G027300 chr5A 100.000 3462 0 0 1 3462 22722922 22726383 0.000000e+00 6394.0
1 TraesCS5A01G027300 chr5A 94.307 685 37 2 2778 3462 22734701 22735383 0.000000e+00 1048.0
2 TraesCS5A01G027300 chr5A 87.263 369 42 4 2705 3073 412911213 412911576 1.920000e-112 416.0
3 TraesCS5A01G027300 chr5A 91.694 301 24 1 3163 3462 703412178 703411878 1.920000e-112 416.0
4 TraesCS5A01G027300 chr5A 96.250 160 6 0 2047 2206 22730460 22730619 2.650000e-66 263.0
5 TraesCS5A01G027300 chr5A 100.000 35 0 0 2230 2264 22730619 22730653 8.020000e-07 65.8
6 TraesCS5A01G027300 chr5D 91.052 1721 89 25 842 2526 34052073 34050382 0.000000e+00 2265.0
7 TraesCS5A01G027300 chr5D 90.190 897 54 19 988 1879 34061409 34060542 0.000000e+00 1138.0
8 TraesCS5A01G027300 chr5D 87.097 527 45 14 282 799 34072864 34072352 3.000000e-160 575.0
9 TraesCS5A01G027300 chr5D 87.967 241 18 7 47 278 34073213 34072975 1.220000e-69 274.0
10 TraesCS5A01G027300 chr5D 96.226 53 2 0 1 53 34073284 34073232 1.710000e-13 87.9
11 TraesCS5A01G027300 chr5D 94.545 55 3 0 168 222 34074987 34074933 6.160000e-13 86.1
12 TraesCS5A01G027300 chr2B 89.779 362 36 1 2712 3073 53058241 53058601 2.430000e-126 462.0
13 TraesCS5A01G027300 chr2B 93.448 290 17 2 3163 3451 109788105 109788393 2.470000e-116 429.0
14 TraesCS5A01G027300 chr2D 93.960 298 16 2 3164 3460 72370433 72370729 1.900000e-122 449.0
15 TraesCS5A01G027300 chr2D 89.041 365 37 3 2705 3069 72626911 72627272 1.900000e-122 449.0
16 TraesCS5A01G027300 chr2D 88.798 366 38 3 2705 3070 72370066 72370428 2.450000e-121 446.0
17 TraesCS5A01G027300 chr2D 88.858 359 38 2 2712 3070 72650581 72650937 1.140000e-119 440.0
18 TraesCS5A01G027300 chr2D 92.617 298 20 2 3164 3460 72627278 72627574 8.880000e-116 427.0
19 TraesCS5A01G027300 chr3D 93.023 301 20 1 3163 3462 365333608 365333308 4.100000e-119 438.0
20 TraesCS5A01G027300 chr3D 87.534 369 44 2 2705 3073 365333975 365333609 3.190000e-115 425.0
21 TraesCS5A01G027300 chr3D 97.778 90 2 0 3073 3162 589276172 589276083 4.630000e-34 156.0
22 TraesCS5A01G027300 chr3D 82.576 132 23 0 1039 1170 598037266 598037397 2.180000e-22 117.0
23 TraesCS5A01G027300 chr3D 84.348 115 18 0 1056 1170 598161075 598161189 2.820000e-21 113.0
24 TraesCS5A01G027300 chr3D 80.667 150 22 7 1056 1201 565819758 565819904 3.650000e-20 110.0
25 TraesCS5A01G027300 chr2A 87.805 369 43 2 2705 3073 622854229 622854595 6.860000e-117 431.0
26 TraesCS5A01G027300 chr2A 91.749 303 20 4 3163 3462 71110844 71111144 1.920000e-112 416.0
27 TraesCS5A01G027300 chr1D 92.027 301 23 1 3163 3462 315546073 315546373 4.130000e-114 422.0
28 TraesCS5A01G027300 chr1D 97.778 90 2 0 3073 3162 254395767 254395678 4.630000e-34 156.0
29 TraesCS5A01G027300 chr7A 92.517 294 21 1 3163 3455 421732439 421732732 1.490000e-113 420.0
30 TraesCS5A01G027300 chr4A 87.263 369 44 3 2705 3073 732006987 732006622 5.340000e-113 418.0
31 TraesCS5A01G027300 chrUn 97.778 90 2 0 3073 3162 216516258 216516169 4.630000e-34 156.0
32 TraesCS5A01G027300 chrUn 97.778 90 2 0 3073 3162 286267125 286267214 4.630000e-34 156.0
33 TraesCS5A01G027300 chr6D 97.778 90 2 0 3073 3162 135462100 135462011 4.630000e-34 156.0
34 TraesCS5A01G027300 chr6D 97.778 90 2 0 3073 3162 142068704 142068615 4.630000e-34 156.0
35 TraesCS5A01G027300 chr6D 97.778 90 2 0 3073 3162 168257271 168257360 4.630000e-34 156.0
36 TraesCS5A01G027300 chr6D 73.504 351 61 28 1879 2213 408184164 408184498 1.700000e-18 104.0
37 TraesCS5A01G027300 chr1A 97.778 90 2 0 3073 3162 554514593 554514682 4.630000e-34 156.0
38 TraesCS5A01G027300 chr3A 86.087 115 16 0 1056 1170 728320822 728320936 1.300000e-24 124.0
39 TraesCS5A01G027300 chr3A 81.333 150 21 7 1056 1201 700215882 700215736 7.850000e-22 115.0
40 TraesCS5A01G027300 chr3A 82.308 130 23 0 1039 1168 728007167 728007296 2.820000e-21 113.0
41 TraesCS5A01G027300 chr6B 72.831 438 79 36 1871 2288 612848896 612849313 2.820000e-21 113.0
42 TraesCS5A01G027300 chr3B 84.211 114 18 0 1056 1169 805255606 805255719 1.020000e-20 111.0
43 TraesCS5A01G027300 chr3B 80.420 143 26 2 1056 1197 754229337 754229196 1.310000e-19 108.0
44 TraesCS5A01G027300 chr3B 81.203 133 24 1 1039 1170 804971775 804971907 4.730000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G027300 chr5A 22722922 22726383 3461 False 6394.00 6394 100.00000 1 3462 1 chr5A.!!$F1 3461
1 TraesCS5A01G027300 chr5A 22734701 22735383 682 False 1048.00 1048 94.30700 2778 3462 1 chr5A.!!$F2 684
2 TraesCS5A01G027300 chr5D 34050382 34052073 1691 True 2265.00 2265 91.05200 842 2526 1 chr5D.!!$R1 1684
3 TraesCS5A01G027300 chr5D 34060542 34061409 867 True 1138.00 1138 90.19000 988 1879 1 chr5D.!!$R2 891
4 TraesCS5A01G027300 chr5D 34072352 34074987 2635 True 255.75 575 91.45875 1 799 4 chr5D.!!$R3 798
5 TraesCS5A01G027300 chr2D 72370066 72370729 663 False 447.50 449 91.37900 2705 3460 2 chr2D.!!$F2 755
6 TraesCS5A01G027300 chr2D 72626911 72627574 663 False 438.00 449 90.82900 2705 3460 2 chr2D.!!$F3 755
7 TraesCS5A01G027300 chr3D 365333308 365333975 667 True 431.50 438 90.27850 2705 3462 2 chr3D.!!$R2 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 1827 0.032815 CCGTTGCGGGGTTGAAAAAT 59.967 50.0 0.00 0.0 44.15 1.82 F
922 2772 0.107654 CCTCCGCTTGGTAAGGGAAG 60.108 60.0 7.14 0.0 43.53 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 3367 0.865111 TTCAATGAACTCGCACCACG 59.135 50.0 0.0 0.0 45.62 4.94 R
2637 4519 0.108329 GCAAGCCTGCTTTGATGCAT 60.108 50.0 0.0 0.0 45.74 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 1727 1.963338 CAGGCGCAATAGCTAGCCC 60.963 63.158 12.13 3.20 45.18 5.19
63 1791 3.907260 ATGGCACCGTCAGGCTGTG 62.907 63.158 15.27 6.43 42.76 3.66
82 1810 0.173708 GGTACCTCTTCTCACAGCCG 59.826 60.000 4.06 0.00 0.00 5.52
87 1815 1.621301 CTCTTCTCACAGCCGTTGCG 61.621 60.000 0.00 0.00 44.33 4.85
99 1827 0.032815 CCGTTGCGGGGTTGAAAAAT 59.967 50.000 0.00 0.00 44.15 1.82
109 1837 4.190772 GGGGTTGAAAAATGTGGCATATG 58.809 43.478 0.00 0.00 0.00 1.78
131 1859 1.570813 GTGCCCTTTTGTTGCTGAAC 58.429 50.000 0.00 0.00 0.00 3.18
167 1895 4.507710 CTCAACTCAAAGCTATGCTGGTA 58.492 43.478 0.00 0.00 39.62 3.25
219 1950 8.992835 AGTTTTAATGGGTCTAGTTAAGTACG 57.007 34.615 0.00 0.00 0.00 3.67
220 1951 7.547019 AGTTTTAATGGGTCTAGTTAAGTACGC 59.453 37.037 0.00 0.00 0.00 4.42
222 1953 2.102578 TGGGTCTAGTTAAGTACGCCC 58.897 52.381 13.74 13.74 35.59 6.13
223 1954 2.102578 GGGTCTAGTTAAGTACGCCCA 58.897 52.381 14.97 0.00 35.15 5.36
225 1956 3.133542 GGGTCTAGTTAAGTACGCCCATT 59.866 47.826 14.97 0.00 35.15 3.16
230 1961 3.528532 AGTTAAGTACGCCCATTGTAGC 58.471 45.455 0.00 0.00 0.00 3.58
231 1962 3.197116 AGTTAAGTACGCCCATTGTAGCT 59.803 43.478 0.00 0.00 0.00 3.32
232 1963 2.311124 AAGTACGCCCATTGTAGCTC 57.689 50.000 0.00 0.00 0.00 4.09
233 1964 0.464452 AGTACGCCCATTGTAGCTCC 59.536 55.000 0.00 0.00 0.00 4.70
241 1976 1.003580 CCATTGTAGCTCCACACCTGT 59.996 52.381 0.00 0.00 0.00 4.00
261 1996 7.614192 CACCTGTACCATTTCTAATTAAACCCT 59.386 37.037 0.00 0.00 0.00 4.34
278 2014 3.832527 ACCCTTGTTAGAAACTGCATGT 58.167 40.909 0.00 0.00 0.00 3.21
280 2016 3.191371 CCCTTGTTAGAAACTGCATGTCC 59.809 47.826 0.00 0.00 0.00 4.02
282 2018 4.083110 CCTTGTTAGAAACTGCATGTCCAG 60.083 45.833 0.00 0.00 38.78 3.86
303 2146 0.914644 TTCTGATCTGGGGCAGAAGG 59.085 55.000 0.00 0.00 44.04 3.46
331 2174 5.866633 GTGTCTAGTTTCTCCAGTTCATCTG 59.133 44.000 0.00 0.00 43.27 2.90
344 2187 2.413310 TCATCTGTGATGCAGCACAT 57.587 45.000 35.33 20.97 46.64 3.21
406 2249 5.888901 TCCTACTTGTAGAAGGTTCAGAGA 58.111 41.667 9.17 0.00 32.95 3.10
456 2299 5.755375 AGACTGTATCTGCAATTGTAATCCG 59.245 40.000 7.40 0.00 35.81 4.18
475 2318 1.677942 GGGTCTGGGACTAGAGTACG 58.322 60.000 0.00 0.00 32.47 3.67
477 2320 1.681166 GGTCTGGGACTAGAGTACGCA 60.681 57.143 0.00 0.00 32.47 5.24
478 2321 1.401199 GTCTGGGACTAGAGTACGCAC 59.599 57.143 0.00 0.00 0.00 5.34
485 2328 0.801067 CTAGAGTACGCACGCAACCC 60.801 60.000 0.00 0.00 0.00 4.11
499 2342 0.387202 CAACCCGGATTTTGTGCACA 59.613 50.000 17.42 17.42 0.00 4.57
503 2348 0.602562 CCGGATTTTGTGCACATGGT 59.397 50.000 22.39 9.27 0.00 3.55
516 2361 1.039856 ACATGGTTGCACCTTGAACC 58.960 50.000 20.39 10.99 43.79 3.62
517 2362 1.331214 CATGGTTGCACCTTGAACCT 58.669 50.000 12.76 0.00 43.79 3.50
518 2363 2.158534 ACATGGTTGCACCTTGAACCTA 60.159 45.455 20.39 3.88 43.79 3.08
519 2364 2.270352 TGGTTGCACCTTGAACCTAG 57.730 50.000 4.70 0.00 41.99 3.02
527 2372 4.714802 TGCACCTTGAACCTAGCTATCTTA 59.285 41.667 0.00 0.00 0.00 2.10
530 2375 6.043411 CACCTTGAACCTAGCTATCTTACAC 58.957 44.000 0.00 0.00 0.00 2.90
536 2381 4.475345 ACCTAGCTATCTTACACCCTCTG 58.525 47.826 0.00 0.00 0.00 3.35
545 2390 4.597004 TCTTACACCCTCTGTACCTACTG 58.403 47.826 0.00 0.00 34.91 2.74
605 2450 7.646446 TTCAAAGATCATGCTGATTTTGTTG 57.354 32.000 18.71 12.95 37.20 3.33
606 2451 6.751157 TCAAAGATCATGCTGATTTTGTTGT 58.249 32.000 18.71 2.65 37.20 3.32
607 2452 7.211573 TCAAAGATCATGCTGATTTTGTTGTT 58.788 30.769 18.71 2.43 37.20 2.83
608 2453 7.170151 TCAAAGATCATGCTGATTTTGTTGTTG 59.830 33.333 18.71 9.74 37.20 3.33
609 2454 6.092955 AGATCATGCTGATTTTGTTGTTGT 57.907 33.333 0.00 0.00 37.20 3.32
610 2455 6.518493 AGATCATGCTGATTTTGTTGTTGTT 58.482 32.000 0.00 0.00 37.20 2.83
614 2459 5.527511 TGCTGATTTTGTTGTTGTTGTTG 57.472 34.783 0.00 0.00 0.00 3.33
632 2477 6.481644 TGTTGTTGGAAATTTGAGGCAAATAC 59.518 34.615 5.88 1.93 42.32 1.89
638 2483 6.644592 TGGAAATTTGAGGCAAATACGAAAAG 59.355 34.615 5.88 0.00 42.32 2.27
639 2484 6.401047 GGAAATTTGAGGCAAATACGAAAAGC 60.401 38.462 5.88 0.00 42.32 3.51
667 2512 6.435430 TCGGACATTTTGAATAGTGAATGG 57.565 37.500 0.00 0.00 34.61 3.16
671 2516 8.070171 CGGACATTTTGAATAGTGAATGGTATC 58.930 37.037 0.00 0.00 34.61 2.24
672 2517 8.352942 GGACATTTTGAATAGTGAATGGTATCC 58.647 37.037 0.00 0.00 34.61 2.59
685 2530 2.111384 TGGTATCCTGTTCAGAGGCTC 58.889 52.381 6.34 6.34 32.51 4.70
688 2533 2.244486 ATCCTGTTCAGAGGCTCAGA 57.756 50.000 18.26 11.87 32.51 3.27
702 2548 6.092533 CAGAGGCTCAGATTTTCTTCTTCTTC 59.907 42.308 18.26 0.00 0.00 2.87
722 2568 3.751246 GCAGGGCGCTTGCATTCA 61.751 61.111 25.26 0.00 41.17 2.57
751 2599 6.297694 GCAACAACTTTTGCCAAATAATCA 57.702 33.333 0.00 0.00 45.22 2.57
752 2600 6.365050 GCAACAACTTTTGCCAAATAATCAG 58.635 36.000 0.00 0.00 45.22 2.90
796 2646 7.177184 TGCCCATACATCAAGATGCTAATTAT 58.823 34.615 9.85 0.00 42.39 1.28
799 2649 9.850628 CCCATACATCAAGATGCTAATTATTTG 57.149 33.333 9.85 0.00 42.39 2.32
818 2668 9.807649 ATTATTTGATTAATTTGCTGACAGGTC 57.192 29.630 4.26 0.00 0.00 3.85
819 2669 5.643379 TTGATTAATTTGCTGACAGGTCC 57.357 39.130 4.26 0.00 0.00 4.46
820 2670 4.661222 TGATTAATTTGCTGACAGGTCCA 58.339 39.130 4.26 0.00 0.00 4.02
821 2671 5.076182 TGATTAATTTGCTGACAGGTCCAA 58.924 37.500 4.26 0.00 0.00 3.53
822 2672 5.716228 TGATTAATTTGCTGACAGGTCCAAT 59.284 36.000 4.26 0.00 0.00 3.16
823 2673 6.889177 TGATTAATTTGCTGACAGGTCCAATA 59.111 34.615 4.26 0.00 0.00 1.90
824 2674 7.560991 TGATTAATTTGCTGACAGGTCCAATAT 59.439 33.333 4.26 0.00 0.00 1.28
825 2675 8.995027 ATTAATTTGCTGACAGGTCCAATATA 57.005 30.769 4.26 0.00 0.00 0.86
826 2676 8.815565 TTAATTTGCTGACAGGTCCAATATAA 57.184 30.769 4.26 1.30 0.00 0.98
827 2677 7.716799 AATTTGCTGACAGGTCCAATATAAA 57.283 32.000 4.26 0.00 0.00 1.40
828 2678 7.716799 ATTTGCTGACAGGTCCAATATAAAA 57.283 32.000 4.26 0.00 0.00 1.52
829 2679 7.531857 TTTGCTGACAGGTCCAATATAAAAA 57.468 32.000 4.26 0.00 0.00 1.94
882 2732 6.305638 CCTTTGCTAAGTCGCTCAAAATAAAC 59.694 38.462 7.14 0.00 0.00 2.01
883 2733 5.933187 TGCTAAGTCGCTCAAAATAAACA 57.067 34.783 0.00 0.00 0.00 2.83
884 2734 6.307031 TGCTAAGTCGCTCAAAATAAACAA 57.693 33.333 0.00 0.00 0.00 2.83
913 2763 1.541310 TACACCACTCCTCCGCTTGG 61.541 60.000 0.00 0.00 35.06 3.61
916 2766 0.834687 ACCACTCCTCCGCTTGGTAA 60.835 55.000 0.00 0.00 40.69 2.85
917 2767 0.108138 CCACTCCTCCGCTTGGTAAG 60.108 60.000 0.00 0.00 0.00 2.34
918 2768 0.108138 CACTCCTCCGCTTGGTAAGG 60.108 60.000 0.00 0.00 0.00 2.69
919 2769 1.265454 ACTCCTCCGCTTGGTAAGGG 61.265 60.000 0.00 0.00 40.80 3.95
920 2770 0.976073 CTCCTCCGCTTGGTAAGGGA 60.976 60.000 7.14 3.67 43.53 4.20
921 2771 0.545787 TCCTCCGCTTGGTAAGGGAA 60.546 55.000 7.14 0.00 43.53 3.97
922 2772 0.107654 CCTCCGCTTGGTAAGGGAAG 60.108 60.000 7.14 0.00 43.53 3.46
923 2773 0.744771 CTCCGCTTGGTAAGGGAAGC 60.745 60.000 7.14 0.00 43.53 3.86
924 2774 1.198759 TCCGCTTGGTAAGGGAAGCT 61.199 55.000 7.14 0.00 43.53 3.74
925 2775 0.539986 CCGCTTGGTAAGGGAAGCTA 59.460 55.000 7.14 0.00 43.53 3.32
953 2803 5.718824 GCGTGCTTACAATAATCGATCGATC 60.719 44.000 29.48 15.68 33.08 3.69
960 2810 1.171308 TAATCGATCGATCCCCGTCC 58.829 55.000 29.48 0.00 39.75 4.79
961 2811 1.863662 AATCGATCGATCCCCGTCCG 61.864 60.000 29.48 6.94 39.75 4.79
962 2812 4.702081 CGATCGATCCCCGTCCGC 62.702 72.222 19.51 0.00 39.75 5.54
963 2813 4.359455 GATCGATCCCCGTCCGCC 62.359 72.222 14.76 0.00 39.75 6.13
972 2822 2.436646 CCGTCCGCCTCATTGCTT 60.437 61.111 0.00 0.00 0.00 3.91
983 2833 2.400399 CTCATTGCTTGTGCTTTGGTG 58.600 47.619 0.00 0.00 40.48 4.17
984 2834 1.755959 TCATTGCTTGTGCTTTGGTGT 59.244 42.857 0.00 0.00 40.48 4.16
986 2836 0.175302 TTGCTTGTGCTTTGGTGTGG 59.825 50.000 0.00 0.00 40.48 4.17
1016 2884 1.225376 ACGATGGCGACGCAAGAAAA 61.225 50.000 23.09 0.00 41.64 2.29
1021 2889 1.002900 TGGCGACGCAAGAAAAAGAAG 60.003 47.619 23.09 0.00 43.62 2.85
1164 3032 4.295119 ACCGACTTCAACGCGCCT 62.295 61.111 5.73 0.00 0.00 5.52
1170 3038 3.883744 CTTCAACGCGCCTGACCCT 62.884 63.158 5.73 0.00 0.00 4.34
1171 3039 2.501223 CTTCAACGCGCCTGACCCTA 62.501 60.000 5.73 0.00 0.00 3.53
1173 3041 3.307906 AACGCGCCTGACCCTACA 61.308 61.111 5.73 0.00 0.00 2.74
1176 3044 4.814294 GCGCCTGACCCTACACGG 62.814 72.222 0.00 0.00 0.00 4.94
1179 3047 2.264794 CCTGACCCTACACGGCAC 59.735 66.667 0.00 0.00 0.00 5.01
1182 3050 3.315949 GACCCTACACGGCACCCA 61.316 66.667 0.00 0.00 0.00 4.51
1198 3066 1.743252 CCAGAGCTTGCCTTCGTCC 60.743 63.158 0.00 0.00 0.00 4.79
1215 3083 4.514577 CCGATCCACGAGGCGCTT 62.515 66.667 7.64 0.00 45.77 4.68
1218 3086 4.162690 ATCCACGAGGCGCTTCCC 62.163 66.667 14.49 0.00 34.51 3.97
1223 3091 4.821589 CGAGGCGCTTCCCACCTC 62.822 72.222 14.49 5.74 45.44 3.85
1496 3367 1.200020 CGTCCCAATCAAAGGCAAGTC 59.800 52.381 0.00 0.00 0.00 3.01
1497 3368 1.200020 GTCCCAATCAAAGGCAAGTCG 59.800 52.381 0.00 0.00 0.00 4.18
1518 3389 3.236816 GTGGTGCGAGTTCATTGAATTG 58.763 45.455 1.78 0.00 0.00 2.32
1519 3390 3.058293 GTGGTGCGAGTTCATTGAATTGA 60.058 43.478 1.78 0.00 0.00 2.57
1520 3391 3.567585 TGGTGCGAGTTCATTGAATTGAA 59.432 39.130 1.78 0.00 33.32 2.69
1521 3392 4.218200 TGGTGCGAGTTCATTGAATTGAAT 59.782 37.500 1.78 0.00 37.88 2.57
1522 3393 5.163513 GGTGCGAGTTCATTGAATTGAATT 58.836 37.500 1.78 0.00 37.88 2.17
1523 3394 5.287035 GGTGCGAGTTCATTGAATTGAATTC 59.713 40.000 10.85 10.85 37.88 2.17
1549 3424 0.957395 CTCAACCTTGGAGCGCATGT 60.957 55.000 11.47 0.00 0.00 3.21
1573 3448 3.189080 TCGATGGATGCTTGTGAACTTTG 59.811 43.478 0.00 0.00 0.00 2.77
1575 3450 3.713858 TGGATGCTTGTGAACTTTGTG 57.286 42.857 0.00 0.00 0.00 3.33
1581 3456 2.415893 GCTTGTGAACTTTGTGTGCAGT 60.416 45.455 0.00 0.00 34.24 4.40
1783 3661 1.344114 GAGCTGGCCAGGATAGAGAAG 59.656 57.143 33.46 5.87 0.00 2.85
1984 3862 3.866582 GAGGAGATGGCGTGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
2079 3957 3.744719 CAACGGGCTCGACGAGGA 61.745 66.667 25.31 0.00 40.11 3.71
2081 3959 2.991076 AACGGGCTCGACGAGGAAG 61.991 63.158 25.31 2.09 40.11 3.46
2082 3960 4.856607 CGGGCTCGACGAGGAAGC 62.857 72.222 25.31 12.28 39.00 3.86
2179 4057 2.031012 CACTGCGGCTGGAACTCA 59.969 61.111 11.64 0.00 0.00 3.41
2189 4067 0.318441 CTGGAACTCAACGCTGGAGA 59.682 55.000 5.69 0.00 36.26 3.71
2310 4188 1.313812 GGAGACGTGATCGACAGGGT 61.314 60.000 0.00 3.30 40.62 4.34
2320 4198 4.083862 GACAGGGTCAGGGTCGCC 62.084 72.222 0.00 0.00 32.09 5.54
2342 4220 0.179034 GAGGGTGAGGATGGTGATGC 60.179 60.000 0.00 0.00 0.00 3.91
2343 4221 0.622738 AGGGTGAGGATGGTGATGCT 60.623 55.000 0.00 0.00 31.83 3.79
2373 4251 2.838225 GGATCGGGCGAGGGAGAA 60.838 66.667 0.00 0.00 0.00 2.87
2376 4254 3.680920 ATCGGGCGAGGGAGAAGGT 62.681 63.158 0.00 0.00 0.00 3.50
2381 4259 2.125912 CGAGGGAGAAGGTGCGTG 60.126 66.667 0.00 0.00 0.00 5.34
2383 4261 1.079750 GAGGGAGAAGGTGCGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
2410 4288 0.394216 TGCAAGCAGACCAGTGTGTT 60.394 50.000 0.00 0.00 0.00 3.32
2422 4300 2.287188 CCAGTGTGTTGCTGCTAGTTTG 60.287 50.000 0.00 0.00 32.93 2.93
2426 4304 1.210155 GTTGCTGCTAGTTTGGCCG 59.790 57.895 0.00 0.00 0.00 6.13
2442 4320 2.497092 CCGTCGACAATCTCGTGCG 61.497 63.158 17.16 0.00 43.45 5.34
2487 4369 1.437986 GCCGGCTTCTCTACACGAT 59.562 57.895 22.15 0.00 0.00 3.73
2488 4370 0.179108 GCCGGCTTCTCTACACGATT 60.179 55.000 22.15 0.00 0.00 3.34
2489 4371 1.841450 CCGGCTTCTCTACACGATTC 58.159 55.000 0.00 0.00 0.00 2.52
2492 4374 2.541999 CGGCTTCTCTACACGATTCTCC 60.542 54.545 0.00 0.00 0.00 3.71
2495 4377 1.676746 TCTCTACACGATTCTCCCCG 58.323 55.000 0.00 0.00 0.00 5.73
2496 4378 1.064906 TCTCTACACGATTCTCCCCGT 60.065 52.381 0.00 0.00 39.88 5.28
2510 4392 7.201556 CGATTCTCCCCGTGATATTGAATAATG 60.202 40.741 0.00 0.00 0.00 1.90
2523 4405 9.591792 GATATTGAATAATGATCTCATCGGTGA 57.408 33.333 0.00 0.00 35.10 4.02
2526 4408 7.895975 TGAATAATGATCTCATCGGTGAATC 57.104 36.000 0.00 6.84 35.10 2.52
2527 4409 7.444299 TGAATAATGATCTCATCGGTGAATCA 58.556 34.615 19.09 19.09 36.85 2.57
2528 4410 8.098912 TGAATAATGATCTCATCGGTGAATCAT 58.901 33.333 20.94 20.94 40.38 2.45
2529 4411 8.489990 AATAATGATCTCATCGGTGAATCATC 57.510 34.615 24.08 15.95 39.23 2.92
2530 4412 3.905784 TGATCTCATCGGTGAATCATCG 58.094 45.455 10.00 10.00 39.56 3.84
2531 4413 3.319122 TGATCTCATCGGTGAATCATCGT 59.681 43.478 15.94 0.52 39.21 3.73
2532 4414 3.355626 TCTCATCGGTGAATCATCGTC 57.644 47.619 15.94 0.00 39.21 4.20
2533 4415 2.687935 TCTCATCGGTGAATCATCGTCA 59.312 45.455 15.94 0.00 39.21 4.35
2534 4416 3.048501 CTCATCGGTGAATCATCGTCAG 58.951 50.000 15.94 7.16 39.21 3.51
2535 4417 1.524355 CATCGGTGAATCATCGTCAGC 59.476 52.381 15.94 0.00 39.21 4.26
2545 4427 3.068064 TCGTCAGCGATGCCCTGA 61.068 61.111 0.00 0.00 42.81 3.86
2546 4428 2.584418 CGTCAGCGATGCCCTGAG 60.584 66.667 0.00 0.00 39.79 3.35
2547 4429 2.895680 GTCAGCGATGCCCTGAGA 59.104 61.111 0.00 0.00 39.79 3.27
2548 4430 1.219124 GTCAGCGATGCCCTGAGAA 59.781 57.895 0.00 0.00 39.79 2.87
2549 4431 0.391661 GTCAGCGATGCCCTGAGAAA 60.392 55.000 0.00 0.00 39.79 2.52
2550 4432 0.324614 TCAGCGATGCCCTGAGAAAA 59.675 50.000 0.00 0.00 34.59 2.29
2551 4433 1.167851 CAGCGATGCCCTGAGAAAAA 58.832 50.000 0.00 0.00 32.03 1.94
2578 4460 2.176546 CCGCTTCGGCAATGTGTG 59.823 61.111 0.00 0.00 41.17 3.82
2590 4472 3.564235 CAATGTGTGCTTGCAGTATGT 57.436 42.857 0.00 0.00 39.31 2.29
2591 4473 3.239254 CAATGTGTGCTTGCAGTATGTG 58.761 45.455 0.00 0.00 39.31 3.21
2592 4474 1.965935 TGTGTGCTTGCAGTATGTGT 58.034 45.000 0.00 0.00 39.31 3.72
2593 4475 3.118905 TGTGTGCTTGCAGTATGTGTA 57.881 42.857 0.00 0.00 39.31 2.90
2594 4476 3.471680 TGTGTGCTTGCAGTATGTGTAA 58.528 40.909 0.00 0.00 39.31 2.41
2595 4477 3.879892 TGTGTGCTTGCAGTATGTGTAAA 59.120 39.130 0.00 0.00 39.31 2.01
2596 4478 4.336713 TGTGTGCTTGCAGTATGTGTAAAA 59.663 37.500 0.00 0.00 39.31 1.52
2597 4479 4.911610 GTGTGCTTGCAGTATGTGTAAAAG 59.088 41.667 0.00 0.00 39.31 2.27
2598 4480 3.914364 GTGCTTGCAGTATGTGTAAAAGC 59.086 43.478 0.00 0.00 39.31 3.51
2599 4481 3.567585 TGCTTGCAGTATGTGTAAAAGCA 59.432 39.130 3.24 3.24 42.20 3.91
2600 4482 4.161333 GCTTGCAGTATGTGTAAAAGCAG 58.839 43.478 0.00 0.00 38.28 4.24
2601 4483 4.726416 CTTGCAGTATGTGTAAAAGCAGG 58.274 43.478 0.00 0.00 39.31 4.85
2602 4484 4.014569 TGCAGTATGTGTAAAAGCAGGA 57.985 40.909 0.00 0.00 39.31 3.86
2603 4485 4.588899 TGCAGTATGTGTAAAAGCAGGAT 58.411 39.130 0.00 0.00 39.31 3.24
2604 4486 4.635765 TGCAGTATGTGTAAAAGCAGGATC 59.364 41.667 0.00 0.00 39.31 3.36
2605 4487 4.035675 GCAGTATGTGTAAAAGCAGGATCC 59.964 45.833 2.48 2.48 39.31 3.36
2606 4488 5.185454 CAGTATGTGTAAAAGCAGGATCCA 58.815 41.667 15.82 0.00 0.00 3.41
2607 4489 5.065218 CAGTATGTGTAAAAGCAGGATCCAC 59.935 44.000 15.82 5.51 0.00 4.02
2608 4490 3.500448 TGTGTAAAAGCAGGATCCACA 57.500 42.857 15.82 4.49 0.00 4.17
2609 4491 3.146066 TGTGTAAAAGCAGGATCCACAC 58.854 45.455 15.82 17.12 36.28 3.82
2610 4492 3.181445 TGTGTAAAAGCAGGATCCACACT 60.181 43.478 22.58 11.70 36.60 3.55
2611 4493 3.821033 GTGTAAAAGCAGGATCCACACTT 59.179 43.478 15.82 11.12 33.69 3.16
2612 4494 3.820467 TGTAAAAGCAGGATCCACACTTG 59.180 43.478 15.82 3.84 0.00 3.16
2613 4495 1.251251 AAAGCAGGATCCACACTTGC 58.749 50.000 15.82 14.56 0.00 4.01
2614 4496 0.111061 AAGCAGGATCCACACTTGCA 59.889 50.000 21.21 0.00 0.00 4.08
2615 4497 0.330604 AGCAGGATCCACACTTGCAT 59.669 50.000 21.21 7.19 0.00 3.96
2616 4498 1.561076 AGCAGGATCCACACTTGCATA 59.439 47.619 21.21 0.00 0.00 3.14
2617 4499 1.945394 GCAGGATCCACACTTGCATAG 59.055 52.381 15.82 0.00 0.00 2.23
2618 4500 2.420547 GCAGGATCCACACTTGCATAGA 60.421 50.000 15.82 0.00 0.00 1.98
2619 4501 3.201290 CAGGATCCACACTTGCATAGAC 58.799 50.000 15.82 0.00 0.00 2.59
2620 4502 2.840038 AGGATCCACACTTGCATAGACA 59.160 45.455 15.82 0.00 0.00 3.41
2621 4503 2.939103 GGATCCACACTTGCATAGACAC 59.061 50.000 6.95 0.00 0.00 3.67
2622 4504 3.599343 GATCCACACTTGCATAGACACA 58.401 45.455 0.00 0.00 0.00 3.72
2623 4505 3.483808 TCCACACTTGCATAGACACAA 57.516 42.857 0.00 0.00 0.00 3.33
2624 4506 4.019792 TCCACACTTGCATAGACACAAT 57.980 40.909 0.00 0.00 0.00 2.71
2625 4507 4.002982 TCCACACTTGCATAGACACAATC 58.997 43.478 0.00 0.00 0.00 2.67
2626 4508 3.752747 CCACACTTGCATAGACACAATCA 59.247 43.478 0.00 0.00 0.00 2.57
2627 4509 4.397103 CCACACTTGCATAGACACAATCAT 59.603 41.667 0.00 0.00 0.00 2.45
2628 4510 5.448225 CCACACTTGCATAGACACAATCATC 60.448 44.000 0.00 0.00 0.00 2.92
2629 4511 5.353400 CACACTTGCATAGACACAATCATCT 59.647 40.000 0.00 0.00 0.00 2.90
2630 4512 5.942236 ACACTTGCATAGACACAATCATCTT 59.058 36.000 0.00 0.00 0.00 2.40
2631 4513 6.432162 ACACTTGCATAGACACAATCATCTTT 59.568 34.615 0.00 0.00 0.00 2.52
2632 4514 6.965500 CACTTGCATAGACACAATCATCTTTC 59.035 38.462 0.00 0.00 0.00 2.62
2633 4515 6.883217 ACTTGCATAGACACAATCATCTTTCT 59.117 34.615 0.00 0.00 0.00 2.52
2634 4516 7.392673 ACTTGCATAGACACAATCATCTTTCTT 59.607 33.333 0.00 0.00 0.00 2.52
2635 4517 7.312657 TGCATAGACACAATCATCTTTCTTC 57.687 36.000 0.00 0.00 0.00 2.87
2636 4518 6.317140 TGCATAGACACAATCATCTTTCTTCC 59.683 38.462 0.00 0.00 0.00 3.46
2637 4519 6.317140 GCATAGACACAATCATCTTTCTTCCA 59.683 38.462 0.00 0.00 0.00 3.53
2638 4520 7.013083 GCATAGACACAATCATCTTTCTTCCAT 59.987 37.037 0.00 0.00 0.00 3.41
2639 4521 6.754702 AGACACAATCATCTTTCTTCCATG 57.245 37.500 0.00 0.00 0.00 3.66
2640 4522 5.125097 AGACACAATCATCTTTCTTCCATGC 59.875 40.000 0.00 0.00 0.00 4.06
2641 4523 4.768448 ACACAATCATCTTTCTTCCATGCA 59.232 37.500 0.00 0.00 0.00 3.96
2642 4524 5.421056 ACACAATCATCTTTCTTCCATGCAT 59.579 36.000 0.00 0.00 0.00 3.96
2643 4525 5.977725 CACAATCATCTTTCTTCCATGCATC 59.022 40.000 0.00 0.00 0.00 3.91
2644 4526 5.655090 ACAATCATCTTTCTTCCATGCATCA 59.345 36.000 0.00 0.00 0.00 3.07
2645 4527 6.153851 ACAATCATCTTTCTTCCATGCATCAA 59.846 34.615 0.00 0.00 0.00 2.57
2646 4528 6.785337 ATCATCTTTCTTCCATGCATCAAA 57.215 33.333 0.00 0.00 0.00 2.69
2647 4529 6.203808 TCATCTTTCTTCCATGCATCAAAG 57.796 37.500 0.00 3.61 0.00 2.77
2648 4530 4.445452 TCTTTCTTCCATGCATCAAAGC 57.555 40.909 11.21 0.00 0.00 3.51
2666 4548 2.931512 GCAGGCTTGCGGTAAAATAA 57.068 45.000 4.56 0.00 41.13 1.40
2667 4549 3.436700 GCAGGCTTGCGGTAAAATAAT 57.563 42.857 4.56 0.00 41.13 1.28
2668 4550 3.115554 GCAGGCTTGCGGTAAAATAATG 58.884 45.455 4.56 0.00 41.13 1.90
2669 4551 3.428862 GCAGGCTTGCGGTAAAATAATGT 60.429 43.478 4.56 0.00 41.13 2.71
2670 4552 4.743493 CAGGCTTGCGGTAAAATAATGTT 58.257 39.130 0.00 0.00 0.00 2.71
2671 4553 5.167845 CAGGCTTGCGGTAAAATAATGTTT 58.832 37.500 0.00 0.00 0.00 2.83
2672 4554 5.637387 CAGGCTTGCGGTAAAATAATGTTTT 59.363 36.000 0.00 0.00 0.00 2.43
2673 4555 6.147000 CAGGCTTGCGGTAAAATAATGTTTTT 59.853 34.615 0.00 0.00 33.56 1.94
2674 4556 6.367695 AGGCTTGCGGTAAAATAATGTTTTTC 59.632 34.615 0.00 0.00 31.54 2.29
2675 4557 6.367695 GGCTTGCGGTAAAATAATGTTTTTCT 59.632 34.615 0.00 0.00 31.54 2.52
2676 4558 7.095397 GGCTTGCGGTAAAATAATGTTTTTCTT 60.095 33.333 0.00 0.00 31.54 2.52
2677 4559 8.279800 GCTTGCGGTAAAATAATGTTTTTCTTT 58.720 29.630 0.00 0.00 31.54 2.52
2680 4562 8.480853 TGCGGTAAAATAATGTTTTTCTTTTCG 58.519 29.630 0.00 0.00 31.54 3.46
2681 4563 8.692615 GCGGTAAAATAATGTTTTTCTTTTCGA 58.307 29.630 0.00 0.00 31.54 3.71
2689 4571 9.899226 ATAATGTTTTTCTTTTCGAAAGAGAGG 57.101 29.630 10.98 1.39 42.22 3.69
2690 4572 6.995511 TGTTTTTCTTTTCGAAAGAGAGGA 57.004 33.333 10.98 0.00 42.22 3.71
2691 4573 7.385778 TGTTTTTCTTTTCGAAAGAGAGGAA 57.614 32.000 10.98 4.27 42.22 3.36
2692 4574 7.472543 TGTTTTTCTTTTCGAAAGAGAGGAAG 58.527 34.615 10.98 4.02 40.46 3.46
2693 4575 7.335924 TGTTTTTCTTTTCGAAAGAGAGGAAGA 59.664 33.333 10.98 6.41 40.46 2.87
2694 4576 6.846325 TTTCTTTTCGAAAGAGAGGAAGAC 57.154 37.500 10.98 0.00 40.46 3.01
2695 4577 4.884247 TCTTTTCGAAAGAGAGGAAGACC 58.116 43.478 10.98 0.00 43.69 3.85
2696 4578 3.679824 TTTCGAAAGAGAGGAAGACCC 57.320 47.619 6.47 0.00 43.69 4.46
2697 4579 1.558233 TCGAAAGAGAGGAAGACCCC 58.442 55.000 0.00 0.00 34.06 4.95
2698 4580 0.173708 CGAAAGAGAGGAAGACCCCG 59.826 60.000 0.00 0.00 36.73 5.73
2699 4581 0.537653 GAAAGAGAGGAAGACCCCGG 59.462 60.000 0.00 0.00 36.73 5.73
2700 4582 1.554583 AAAGAGAGGAAGACCCCGGC 61.555 60.000 0.00 0.00 36.73 6.13
2701 4583 3.471806 GAGAGGAAGACCCCGGCC 61.472 72.222 0.00 0.00 36.73 6.13
2702 4584 3.986116 GAGAGGAAGACCCCGGCCT 62.986 68.421 0.00 0.00 36.73 5.19
2703 4585 3.471806 GAGGAAGACCCCGGCCTC 61.472 72.222 7.66 7.66 40.04 4.70
2704 4586 3.986116 GAGGAAGACCCCGGCCTCT 62.986 68.421 14.36 4.99 42.81 3.69
2705 4587 3.787001 GGAAGACCCCGGCCTCTG 61.787 72.222 0.00 0.00 0.00 3.35
2706 4588 4.475135 GAAGACCCCGGCCTCTGC 62.475 72.222 0.00 0.00 0.00 4.26
2709 4591 4.554036 GACCCCGGCCTCTGCATC 62.554 72.222 0.00 0.00 40.13 3.91
2795 4677 6.258727 CCATCTTAACAACATCTGTCGCTATT 59.741 38.462 0.00 0.00 37.23 1.73
2830 4712 1.306654 AAGGGGTGCCGATAGTCCA 60.307 57.895 0.00 0.00 0.00 4.02
2861 4743 2.489971 CAAACAGACCTCGCACCTAAA 58.510 47.619 0.00 0.00 0.00 1.85
2941 4823 2.561037 TTCGGCGCACTCACAGAGA 61.561 57.895 10.83 0.00 33.32 3.10
2948 4830 3.374402 ACTCACAGAGACCGCCGG 61.374 66.667 0.00 0.00 33.32 6.13
3015 4897 1.077285 CATGCCAGGTCTGCCATCA 60.077 57.895 0.00 0.00 37.19 3.07
3073 4955 2.228103 GTGAGTCCGTCTACACACATCA 59.772 50.000 0.00 0.00 39.73 3.07
3074 4956 2.888414 TGAGTCCGTCTACACACATCAA 59.112 45.455 0.00 0.00 0.00 2.57
3075 4957 3.509967 TGAGTCCGTCTACACACATCAAT 59.490 43.478 0.00 0.00 0.00 2.57
3076 4958 4.106197 GAGTCCGTCTACACACATCAATC 58.894 47.826 0.00 0.00 0.00 2.67
3077 4959 3.119101 AGTCCGTCTACACACATCAATCC 60.119 47.826 0.00 0.00 0.00 3.01
3078 4960 3.096852 TCCGTCTACACACATCAATCCT 58.903 45.455 0.00 0.00 0.00 3.24
3079 4961 3.513912 TCCGTCTACACACATCAATCCTT 59.486 43.478 0.00 0.00 0.00 3.36
3080 4962 4.707934 TCCGTCTACACACATCAATCCTTA 59.292 41.667 0.00 0.00 0.00 2.69
3081 4963 4.804139 CCGTCTACACACATCAATCCTTAC 59.196 45.833 0.00 0.00 0.00 2.34
3082 4964 4.804139 CGTCTACACACATCAATCCTTACC 59.196 45.833 0.00 0.00 0.00 2.85
3083 4965 4.804139 GTCTACACACATCAATCCTTACCG 59.196 45.833 0.00 0.00 0.00 4.02
3084 4966 3.973206 ACACACATCAATCCTTACCGA 57.027 42.857 0.00 0.00 0.00 4.69
3085 4967 3.596214 ACACACATCAATCCTTACCGAC 58.404 45.455 0.00 0.00 0.00 4.79
3086 4968 3.007506 ACACACATCAATCCTTACCGACA 59.992 43.478 0.00 0.00 0.00 4.35
3087 4969 4.000325 CACACATCAATCCTTACCGACAA 59.000 43.478 0.00 0.00 0.00 3.18
3088 4970 4.454161 CACACATCAATCCTTACCGACAAA 59.546 41.667 0.00 0.00 0.00 2.83
3089 4971 5.049060 CACACATCAATCCTTACCGACAAAA 60.049 40.000 0.00 0.00 0.00 2.44
3090 4972 5.533154 ACACATCAATCCTTACCGACAAAAA 59.467 36.000 0.00 0.00 0.00 1.94
3121 5003 4.465886 AGTCAGGCTGATAATAGTCGAGT 58.534 43.478 21.84 0.00 0.00 4.18
3122 5004 4.277174 AGTCAGGCTGATAATAGTCGAGTG 59.723 45.833 21.84 0.00 0.00 3.51
3123 5005 4.276183 GTCAGGCTGATAATAGTCGAGTGA 59.724 45.833 21.84 0.00 0.00 3.41
3124 5006 4.276183 TCAGGCTGATAATAGTCGAGTGAC 59.724 45.833 14.43 0.00 45.86 3.67
3136 5018 2.839026 GTCGAGTGACATTACTTCGTCG 59.161 50.000 0.00 0.00 44.82 5.12
3137 5019 2.159612 TCGAGTGACATTACTTCGTCGG 60.160 50.000 0.00 0.00 34.78 4.79
3138 5020 2.413765 CGAGTGACATTACTTCGTCGGT 60.414 50.000 0.00 0.00 34.78 4.69
3139 5021 3.169733 GAGTGACATTACTTCGTCGGTC 58.830 50.000 0.00 0.00 34.78 4.79
3140 5022 2.094854 AGTGACATTACTTCGTCGGTCC 60.095 50.000 0.00 0.00 34.78 4.46
3141 5023 1.135603 TGACATTACTTCGTCGGTCCG 60.136 52.381 4.39 4.39 34.78 4.79
3142 5024 1.131126 GACATTACTTCGTCGGTCCGA 59.869 52.381 10.71 10.71 34.52 4.55
3143 5025 1.541147 ACATTACTTCGTCGGTCCGAA 59.459 47.619 17.32 0.00 43.96 4.30
3144 5026 1.916000 CATTACTTCGTCGGTCCGAAC 59.084 52.381 17.32 9.53 41.54 3.95
3145 5027 1.238439 TTACTTCGTCGGTCCGAACT 58.762 50.000 17.32 0.00 41.54 3.01
3146 5028 2.093306 TACTTCGTCGGTCCGAACTA 57.907 50.000 17.32 1.02 41.54 2.24
3147 5029 1.238439 ACTTCGTCGGTCCGAACTAA 58.762 50.000 17.32 9.57 41.54 2.24
3148 5030 1.198637 ACTTCGTCGGTCCGAACTAAG 59.801 52.381 17.32 19.92 41.54 2.18
3149 5031 0.523072 TTCGTCGGTCCGAACTAAGG 59.477 55.000 17.32 0.00 41.54 2.69
3150 5032 0.321564 TCGTCGGTCCGAACTAAGGA 60.322 55.000 17.32 1.59 37.72 3.36
3151 5033 0.523072 CGTCGGTCCGAACTAAGGAA 59.477 55.000 17.32 0.00 39.84 3.36
3152 5034 1.133790 CGTCGGTCCGAACTAAGGAAT 59.866 52.381 17.32 0.00 39.84 3.01
3153 5035 2.793933 CGTCGGTCCGAACTAAGGAATC 60.794 54.545 17.32 0.00 39.84 2.52
3154 5036 2.426381 GTCGGTCCGAACTAAGGAATCT 59.574 50.000 17.32 0.00 39.84 2.40
3155 5037 2.426024 TCGGTCCGAACTAAGGAATCTG 59.574 50.000 12.68 0.00 39.84 2.90
3156 5038 2.165845 CGGTCCGAACTAAGGAATCTGT 59.834 50.000 4.91 0.00 39.84 3.41
3157 5039 3.368116 CGGTCCGAACTAAGGAATCTGTT 60.368 47.826 4.91 0.00 39.84 3.16
3158 5040 4.142315 CGGTCCGAACTAAGGAATCTGTTA 60.142 45.833 4.91 0.00 39.84 2.41
3159 5041 5.349809 GGTCCGAACTAAGGAATCTGTTAG 58.650 45.833 0.00 2.72 39.84 2.34
3160 5042 5.126707 GGTCCGAACTAAGGAATCTGTTAGA 59.873 44.000 9.02 0.00 39.84 2.10
3161 5043 6.350780 GGTCCGAACTAAGGAATCTGTTAGAA 60.351 42.308 9.02 0.00 39.84 2.10
3242 5213 0.818040 AACACCGCTCCACCAAAGAC 60.818 55.000 0.00 0.00 0.00 3.01
3244 5215 2.342279 CCGCTCCACCAAAGACGA 59.658 61.111 0.00 0.00 0.00 4.20
3390 5362 2.818432 GGTCTAGAACTTCTCCACGACA 59.182 50.000 0.00 0.00 0.00 4.35
3422 5394 4.138290 AGAAGAGAACGACACAGAAGAGA 58.862 43.478 0.00 0.00 0.00 3.10
3424 5396 3.745799 AGAGAACGACACAGAAGAGAGA 58.254 45.455 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.815213 TAGCTATTGCGCCTGCTTGG 60.815 55.000 16.18 0.00 45.42 3.61
1 2 0.585357 CTAGCTATTGCGCCTGCTTG 59.415 55.000 16.18 11.71 45.42 4.01
23 1727 6.148976 CCATGATAGAATTGGTAGAGTGCATG 59.851 42.308 0.00 0.00 0.00 4.06
63 1791 0.173708 CGGCTGTGAGAAGAGGTACC 59.826 60.000 2.73 2.73 0.00 3.34
82 1810 1.864082 CACATTTTTCAACCCCGCAAC 59.136 47.619 0.00 0.00 0.00 4.17
87 1815 2.857186 ATGCCACATTTTTCAACCCC 57.143 45.000 0.00 0.00 0.00 4.95
117 1845 5.120519 ACACAACAATGTTCAGCAACAAAAG 59.879 36.000 0.00 0.00 45.78 2.27
131 1859 3.181498 TGAGTTGAGCACACACAACAATG 60.181 43.478 0.00 0.00 46.20 2.82
167 1895 9.995003 TCAGTAAGCCAATTAATCAAACAATTT 57.005 25.926 0.00 0.00 0.00 1.82
189 1917 9.503399 CTTAACTAGACCCATTAAAACTTCAGT 57.497 33.333 0.00 0.00 0.00 3.41
219 1950 1.032114 GGTGTGGAGCTACAATGGGC 61.032 60.000 0.00 0.00 31.36 5.36
220 1951 0.620556 AGGTGTGGAGCTACAATGGG 59.379 55.000 0.00 0.00 31.36 4.00
222 1953 2.479566 ACAGGTGTGGAGCTACAATG 57.520 50.000 0.00 0.00 31.36 2.82
223 1954 2.236395 GGTACAGGTGTGGAGCTACAAT 59.764 50.000 0.00 0.00 31.64 2.71
225 1956 1.263356 GGTACAGGTGTGGAGCTACA 58.737 55.000 0.00 0.00 31.64 2.74
261 1996 4.460263 ACTGGACATGCAGTTTCTAACAA 58.540 39.130 0.00 0.00 0.00 2.83
280 2016 1.280133 TCTGCCCCAGATCAGAAACTG 59.720 52.381 0.00 0.00 35.39 3.16
282 2018 2.363683 CTTCTGCCCCAGATCAGAAAC 58.636 52.381 6.21 0.00 45.36 2.78
284 2020 0.914644 CCTTCTGCCCCAGATCAGAA 59.085 55.000 0.00 4.84 44.33 3.02
296 2139 1.153549 CTAGACACGCCCCTTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
303 2146 0.606604 TGGAGAAACTAGACACGCCC 59.393 55.000 0.00 0.00 0.00 6.13
307 2150 5.866633 CAGATGAACTGGAGAAACTAGACAC 59.133 44.000 0.00 0.00 42.39 3.67
331 2174 2.349590 TCAGTACATGTGCTGCATCAC 58.650 47.619 31.96 13.71 42.03 3.06
344 2187 3.425162 TCTGCAGTCTCTCTCAGTACA 57.575 47.619 14.67 0.00 0.00 2.90
406 2249 3.380637 GTGATCATGCTTCAGGCTTTCAT 59.619 43.478 0.00 0.00 42.39 2.57
451 2294 0.635009 TCTAGTCCCAGACCCGGATT 59.365 55.000 0.73 0.00 32.18 3.01
452 2295 0.186386 CTCTAGTCCCAGACCCGGAT 59.814 60.000 0.73 0.00 32.18 4.18
456 2299 1.677942 CGTACTCTAGTCCCAGACCC 58.322 60.000 0.00 0.00 32.18 4.46
475 2318 1.732683 CAAAATCCGGGTTGCGTGC 60.733 57.895 0.00 0.00 0.00 5.34
477 2320 1.657556 CACAAAATCCGGGTTGCGT 59.342 52.632 0.00 0.00 0.00 5.24
478 2321 1.732683 GCACAAAATCCGGGTTGCG 60.733 57.895 0.00 0.00 0.00 4.85
485 2328 2.060284 CAACCATGTGCACAAAATCCG 58.940 47.619 25.72 9.83 0.00 4.18
503 2348 3.519510 AGATAGCTAGGTTCAAGGTGCAA 59.480 43.478 0.00 0.00 0.00 4.08
509 2354 5.364157 AGGGTGTAAGATAGCTAGGTTCAAG 59.636 44.000 0.00 0.00 0.00 3.02
516 2361 5.474189 GGTACAGAGGGTGTAAGATAGCTAG 59.526 48.000 0.00 0.00 43.49 3.42
517 2362 5.133999 AGGTACAGAGGGTGTAAGATAGCTA 59.866 44.000 0.00 0.00 43.49 3.32
518 2363 4.079096 AGGTACAGAGGGTGTAAGATAGCT 60.079 45.833 0.00 0.00 43.49 3.32
519 2364 4.216708 AGGTACAGAGGGTGTAAGATAGC 58.783 47.826 0.00 0.00 43.49 2.97
527 2372 2.994957 ACAGTAGGTACAGAGGGTGT 57.005 50.000 0.00 0.00 43.86 4.16
571 2416 9.985730 TCAGCATGATCTTTGAATTTTACTTTT 57.014 25.926 0.00 0.00 42.56 2.27
594 2439 6.718454 TTCCAACAACAACAACAAAATCAG 57.282 33.333 0.00 0.00 0.00 2.90
599 2444 7.308229 CCTCAAATTTCCAACAACAACAACAAA 60.308 33.333 0.00 0.00 0.00 2.83
602 2447 5.447144 GCCTCAAATTTCCAACAACAACAAC 60.447 40.000 0.00 0.00 0.00 3.32
605 2450 4.187694 TGCCTCAAATTTCCAACAACAAC 58.812 39.130 0.00 0.00 0.00 3.32
606 2451 4.478206 TGCCTCAAATTTCCAACAACAA 57.522 36.364 0.00 0.00 0.00 2.83
607 2452 4.478206 TTGCCTCAAATTTCCAACAACA 57.522 36.364 0.00 0.00 0.00 3.33
608 2453 6.346518 CGTATTTGCCTCAAATTTCCAACAAC 60.347 38.462 9.67 0.48 40.60 3.32
609 2454 5.694006 CGTATTTGCCTCAAATTTCCAACAA 59.306 36.000 9.67 0.00 40.60 2.83
610 2455 5.010112 TCGTATTTGCCTCAAATTTCCAACA 59.990 36.000 9.67 0.00 40.60 3.33
614 2459 6.401047 GCTTTTCGTATTTGCCTCAAATTTCC 60.401 38.462 9.67 0.16 40.60 3.13
632 2477 3.747099 AATGTCCGAATCTGCTTTTCG 57.253 42.857 8.60 8.60 44.17 3.46
638 2483 5.967674 CACTATTCAAAATGTCCGAATCTGC 59.032 40.000 0.00 0.00 31.94 4.26
639 2484 7.307493 TCACTATTCAAAATGTCCGAATCTG 57.693 36.000 0.00 0.00 31.94 2.90
647 2492 9.125026 AGGATACCATTCACTATTCAAAATGTC 57.875 33.333 0.00 0.00 37.17 3.06
667 2512 3.027412 TCTGAGCCTCTGAACAGGATAC 58.973 50.000 0.00 0.00 35.20 2.24
671 2516 3.347077 AAATCTGAGCCTCTGAACAGG 57.653 47.619 5.34 0.00 36.50 4.00
672 2517 4.577875 AGAAAATCTGAGCCTCTGAACAG 58.422 43.478 5.34 0.00 0.00 3.16
685 2530 3.753272 TGCGGGAAGAAGAAGAAAATCTG 59.247 43.478 0.00 0.00 0.00 2.90
688 2533 3.084786 CCTGCGGGAAGAAGAAGAAAAT 58.915 45.455 5.28 0.00 33.58 1.82
732 2580 8.984891 TCATACTGATTATTTGGCAAAAGTTG 57.015 30.769 17.70 14.25 0.00 3.16
748 2596 7.831193 GGCATCTACCCATTTTATCATACTGAT 59.169 37.037 0.00 0.00 40.72 2.90
749 2597 7.168219 GGCATCTACCCATTTTATCATACTGA 58.832 38.462 0.00 0.00 0.00 3.41
750 2598 7.383102 GGCATCTACCCATTTTATCATACTG 57.617 40.000 0.00 0.00 0.00 2.74
765 2613 4.623932 TCTTGATGTATGGGCATCTACC 57.376 45.455 7.45 0.00 44.02 3.18
796 2646 5.538053 TGGACCTGTCAGCAAATTAATCAAA 59.462 36.000 0.00 0.00 0.00 2.69
799 2649 5.643379 TTGGACCTGTCAGCAAATTAATC 57.357 39.130 0.00 0.00 0.00 1.75
800 2650 7.902920 ATATTGGACCTGTCAGCAAATTAAT 57.097 32.000 0.00 0.00 0.00 1.40
801 2651 8.815565 TTATATTGGACCTGTCAGCAAATTAA 57.184 30.769 0.00 0.00 0.00 1.40
802 2652 8.815565 TTTATATTGGACCTGTCAGCAAATTA 57.184 30.769 0.00 0.00 0.00 1.40
803 2653 7.716799 TTTATATTGGACCTGTCAGCAAATT 57.283 32.000 0.00 0.00 0.00 1.82
804 2654 7.716799 TTTTATATTGGACCTGTCAGCAAAT 57.283 32.000 0.00 0.00 0.00 2.32
805 2655 7.531857 TTTTTATATTGGACCTGTCAGCAAA 57.468 32.000 0.00 0.00 0.00 3.68
827 2677 9.998106 CAGCCCATGTACTATACTTAGTATTTT 57.002 33.333 10.35 0.99 41.69 1.82
828 2678 8.095169 GCAGCCCATGTACTATACTTAGTATTT 58.905 37.037 10.35 1.33 41.69 1.40
829 2679 7.455008 AGCAGCCCATGTACTATACTTAGTATT 59.545 37.037 10.35 0.00 41.69 1.89
830 2680 6.954684 AGCAGCCCATGTACTATACTTAGTAT 59.045 38.462 9.96 9.96 41.69 2.12
831 2681 6.312529 AGCAGCCCATGTACTATACTTAGTA 58.687 40.000 0.00 0.00 39.42 1.82
832 2682 5.148502 AGCAGCCCATGTACTATACTTAGT 58.851 41.667 0.00 0.00 41.57 2.24
833 2683 5.730296 AGCAGCCCATGTACTATACTTAG 57.270 43.478 0.00 0.00 0.00 2.18
834 2684 5.479375 GGTAGCAGCCCATGTACTATACTTA 59.521 44.000 0.00 0.00 0.00 2.24
835 2685 4.283722 GGTAGCAGCCCATGTACTATACTT 59.716 45.833 0.00 0.00 0.00 2.24
836 2686 3.833070 GGTAGCAGCCCATGTACTATACT 59.167 47.826 0.00 0.00 0.00 2.12
837 2687 3.833070 AGGTAGCAGCCCATGTACTATAC 59.167 47.826 0.00 0.00 0.00 1.47
838 2688 4.127918 AGGTAGCAGCCCATGTACTATA 57.872 45.455 0.00 0.00 0.00 1.31
839 2689 2.977808 AGGTAGCAGCCCATGTACTAT 58.022 47.619 0.00 0.00 0.00 2.12
840 2690 2.471815 AGGTAGCAGCCCATGTACTA 57.528 50.000 0.00 0.00 0.00 1.82
913 2763 0.175989 ACGCAGCTAGCTTCCCTTAC 59.824 55.000 16.46 0.00 42.61 2.34
916 2766 2.581354 CACGCAGCTAGCTTCCCT 59.419 61.111 16.46 0.00 42.61 4.20
917 2767 3.198489 GCACGCAGCTAGCTTCCC 61.198 66.667 16.46 5.60 42.61 3.97
943 2793 2.333417 CGGACGGGGATCGATCGAT 61.333 63.158 29.76 29.76 42.43 3.59
960 2810 0.038892 AAAGCACAAGCAATGAGGCG 60.039 50.000 0.00 0.00 45.49 5.52
961 2811 1.425412 CAAAGCACAAGCAATGAGGC 58.575 50.000 0.00 0.65 45.49 4.70
962 2812 1.342174 ACCAAAGCACAAGCAATGAGG 59.658 47.619 0.00 0.00 45.49 3.86
963 2813 2.223876 ACACCAAAGCACAAGCAATGAG 60.224 45.455 0.00 0.00 45.49 2.90
970 2820 1.267806 CTAGCCACACCAAAGCACAAG 59.732 52.381 0.00 0.00 0.00 3.16
972 2822 1.172180 GCTAGCCACACCAAAGCACA 61.172 55.000 2.29 0.00 33.38 4.57
1016 2884 2.750350 CGTGGGGTGCCTCTTCTT 59.250 61.111 0.00 0.00 0.00 2.52
1164 3032 3.315949 GGGTGCCGTGTAGGGTCA 61.316 66.667 0.00 0.00 41.48 4.02
1170 3038 2.214216 AAGCTCTGGGTGCCGTGTA 61.214 57.895 0.00 0.00 0.00 2.90
1171 3039 3.560251 AAGCTCTGGGTGCCGTGT 61.560 61.111 0.00 0.00 0.00 4.49
1176 3044 2.282745 AAGGCAAGCTCTGGGTGC 60.283 61.111 0.00 0.00 0.00 5.01
1179 3047 1.743252 GACGAAGGCAAGCTCTGGG 60.743 63.158 0.00 0.00 0.00 4.45
1182 3050 2.665603 GGGACGAAGGCAAGCTCT 59.334 61.111 0.00 0.00 0.00 4.09
1198 3066 4.514577 AAGCGCCTCGTGGATCGG 62.515 66.667 7.92 0.00 40.32 4.18
1215 3083 2.607750 GAGGTGGCTGAGGTGGGA 60.608 66.667 0.00 0.00 0.00 4.37
1218 3086 3.721706 GGGGAGGTGGCTGAGGTG 61.722 72.222 0.00 0.00 0.00 4.00
1482 3353 1.608590 CACCACGACTTGCCTTTGATT 59.391 47.619 0.00 0.00 0.00 2.57
1496 3367 0.865111 TTCAATGAACTCGCACCACG 59.135 50.000 0.00 0.00 45.62 4.94
1497 3368 3.058293 TCAATTCAATGAACTCGCACCAC 60.058 43.478 0.00 0.00 0.00 4.16
1507 3378 7.117092 TGAGTACGTCGAATTCAATTCAATGAA 59.883 33.333 10.76 0.00 43.03 2.57
1509 3380 6.761117 TGAGTACGTCGAATTCAATTCAATG 58.239 36.000 10.76 0.00 39.22 2.82
1518 3389 3.367025 CCAAGGTTGAGTACGTCGAATTC 59.633 47.826 0.00 0.00 0.00 2.17
1519 3390 3.006110 TCCAAGGTTGAGTACGTCGAATT 59.994 43.478 0.00 0.00 0.00 2.17
1520 3391 2.559668 TCCAAGGTTGAGTACGTCGAAT 59.440 45.455 0.00 0.00 0.00 3.34
1521 3392 1.955778 TCCAAGGTTGAGTACGTCGAA 59.044 47.619 0.00 0.00 0.00 3.71
1522 3393 1.538512 CTCCAAGGTTGAGTACGTCGA 59.461 52.381 0.00 0.00 0.00 4.20
1523 3394 1.978542 CTCCAAGGTTGAGTACGTCG 58.021 55.000 0.00 0.00 0.00 5.12
1524 3395 1.711206 GCTCCAAGGTTGAGTACGTC 58.289 55.000 0.00 0.00 0.00 4.34
1549 3424 4.406648 AGTTCACAAGCATCCATCGATA 57.593 40.909 0.00 0.00 0.00 2.92
1581 3456 4.069232 CCCGTCGCTCCTCTGCAA 62.069 66.667 0.00 0.00 0.00 4.08
1732 3610 2.717809 GGCGTCGAACGAGTTGAGC 61.718 63.158 10.82 0.00 46.05 4.26
1783 3661 4.459089 GCCGGACAGGACAGCTCC 62.459 72.222 5.05 0.00 45.00 4.70
2079 3957 4.682714 TCCCCCTGCTCCTGGCTT 62.683 66.667 0.00 0.00 42.39 4.35
2081 3959 4.120755 CTTCCCCCTGCTCCTGGC 62.121 72.222 0.00 0.00 42.22 4.85
2082 3960 3.415087 CCTTCCCCCTGCTCCTGG 61.415 72.222 0.00 0.00 0.00 4.45
2116 3994 4.792804 GCCAGGACCTCCAGCTGC 62.793 72.222 8.66 0.00 38.89 5.25
2164 4042 2.671177 CGTTGAGTTCCAGCCGCAG 61.671 63.158 0.00 0.00 0.00 5.18
2293 4171 0.608308 TGACCCTGTCGATCACGTCT 60.608 55.000 0.00 0.00 40.69 4.18
2320 4198 0.684479 TCACCATCCTCACCCTCTCG 60.684 60.000 0.00 0.00 0.00 4.04
2322 4200 1.504912 CATCACCATCCTCACCCTCT 58.495 55.000 0.00 0.00 0.00 3.69
2342 4220 1.749334 CGATCCCCTTCTTCCCCGAG 61.749 65.000 0.00 0.00 0.00 4.63
2343 4221 1.760875 CGATCCCCTTCTTCCCCGA 60.761 63.158 0.00 0.00 0.00 5.14
2376 4254 2.666190 GCAGCTTGAGGTCACGCA 60.666 61.111 10.69 0.00 42.72 5.24
2381 4259 0.604780 TCTGCTTGCAGCTTGAGGTC 60.605 55.000 16.91 0.00 42.97 3.85
2383 4261 1.584380 GGTCTGCTTGCAGCTTGAGG 61.584 60.000 16.91 0.00 42.97 3.86
2410 4288 1.671054 GACGGCCAAACTAGCAGCA 60.671 57.895 2.24 0.00 0.00 4.41
2487 4369 7.073457 TCATTATTCAATATCACGGGGAGAA 57.927 36.000 0.00 0.00 0.00 2.87
2488 4370 6.680148 TCATTATTCAATATCACGGGGAGA 57.320 37.500 0.00 0.00 0.00 3.71
2489 4371 7.334090 AGATCATTATTCAATATCACGGGGAG 58.666 38.462 0.00 0.00 0.00 4.30
2492 4374 8.728337 ATGAGATCATTATTCAATATCACGGG 57.272 34.615 0.00 0.00 31.37 5.28
2495 4377 9.376075 ACCGATGAGATCATTATTCAATATCAC 57.624 33.333 0.00 0.00 36.57 3.06
2496 4378 9.374838 CACCGATGAGATCATTATTCAATATCA 57.625 33.333 0.00 0.00 36.57 2.15
2497 4379 9.591792 TCACCGATGAGATCATTATTCAATATC 57.408 33.333 0.00 0.00 36.57 1.63
2498 4380 9.948964 TTCACCGATGAGATCATTATTCAATAT 57.051 29.630 0.00 0.00 36.57 1.28
2499 4381 9.948964 ATTCACCGATGAGATCATTATTCAATA 57.051 29.630 0.00 0.00 36.57 1.90
2500 4382 8.859236 ATTCACCGATGAGATCATTATTCAAT 57.141 30.769 0.00 0.00 36.57 2.57
2501 4383 7.933033 TGATTCACCGATGAGATCATTATTCAA 59.067 33.333 0.00 0.00 36.57 2.69
2510 4392 3.906998 ACGATGATTCACCGATGAGATC 58.093 45.455 7.58 0.00 35.83 2.75
2529 4411 2.563050 TTCTCAGGGCATCGCTGACG 62.563 60.000 9.13 6.71 45.95 4.35
2530 4412 0.391661 TTTCTCAGGGCATCGCTGAC 60.392 55.000 9.13 0.00 45.95 3.51
2532 4414 1.167851 TTTTTCTCAGGGCATCGCTG 58.832 50.000 4.73 4.73 44.21 5.18
2533 4415 3.650647 TTTTTCTCAGGGCATCGCT 57.349 47.368 0.00 0.00 0.00 4.93
2562 4444 2.502510 GCACACATTGCCGAAGCG 60.503 61.111 0.00 0.00 46.63 4.68
2570 4452 3.239254 CACATACTGCAAGCACACATTG 58.761 45.455 0.00 0.00 37.60 2.82
2571 4453 2.886523 ACACATACTGCAAGCACACATT 59.113 40.909 0.00 0.00 37.60 2.71
2572 4454 2.507484 ACACATACTGCAAGCACACAT 58.493 42.857 0.00 0.00 37.60 3.21
2573 4455 1.965935 ACACATACTGCAAGCACACA 58.034 45.000 0.00 0.00 37.60 3.72
2574 4456 4.481930 TTTACACATACTGCAAGCACAC 57.518 40.909 0.00 0.00 37.60 3.82
2575 4457 4.556501 GCTTTTACACATACTGCAAGCACA 60.557 41.667 0.00 0.00 37.60 4.57
2576 4458 3.914364 GCTTTTACACATACTGCAAGCAC 59.086 43.478 0.00 0.00 37.60 4.40
2577 4459 3.567585 TGCTTTTACACATACTGCAAGCA 59.432 39.130 0.00 0.00 37.94 3.91
2578 4460 4.159377 TGCTTTTACACATACTGCAAGC 57.841 40.909 0.00 0.00 37.60 4.01
2579 4461 4.455533 TCCTGCTTTTACACATACTGCAAG 59.544 41.667 0.00 0.00 42.29 4.01
2580 4462 4.393834 TCCTGCTTTTACACATACTGCAA 58.606 39.130 0.00 0.00 0.00 4.08
2581 4463 4.014569 TCCTGCTTTTACACATACTGCA 57.985 40.909 0.00 0.00 0.00 4.41
2582 4464 4.035675 GGATCCTGCTTTTACACATACTGC 59.964 45.833 3.84 0.00 0.00 4.40
2583 4465 5.065218 GTGGATCCTGCTTTTACACATACTG 59.935 44.000 14.23 0.00 0.00 2.74
2584 4466 5.186198 GTGGATCCTGCTTTTACACATACT 58.814 41.667 14.23 0.00 0.00 2.12
2585 4467 4.941263 TGTGGATCCTGCTTTTACACATAC 59.059 41.667 14.23 0.00 33.03 2.39
2586 4468 4.941263 GTGTGGATCCTGCTTTTACACATA 59.059 41.667 19.21 0.00 39.23 2.29
2587 4469 3.758554 GTGTGGATCCTGCTTTTACACAT 59.241 43.478 19.21 0.00 39.23 3.21
2588 4470 3.146066 GTGTGGATCCTGCTTTTACACA 58.854 45.455 19.21 7.77 37.48 3.72
2589 4471 3.412386 AGTGTGGATCCTGCTTTTACAC 58.588 45.455 17.33 17.33 37.72 2.90
2590 4472 3.788227 AGTGTGGATCCTGCTTTTACA 57.212 42.857 14.23 3.87 0.00 2.41
2591 4473 3.366374 GCAAGTGTGGATCCTGCTTTTAC 60.366 47.826 14.23 0.88 0.00 2.01
2592 4474 2.819608 GCAAGTGTGGATCCTGCTTTTA 59.180 45.455 14.23 0.00 0.00 1.52
2593 4475 1.615392 GCAAGTGTGGATCCTGCTTTT 59.385 47.619 14.23 0.00 0.00 2.27
2594 4476 1.251251 GCAAGTGTGGATCCTGCTTT 58.749 50.000 14.23 0.00 0.00 3.51
2595 4477 0.111061 TGCAAGTGTGGATCCTGCTT 59.889 50.000 20.08 14.61 0.00 3.91
2596 4478 0.330604 ATGCAAGTGTGGATCCTGCT 59.669 50.000 20.08 10.12 27.77 4.24
2597 4479 1.945394 CTATGCAAGTGTGGATCCTGC 59.055 52.381 14.23 14.34 37.04 4.85
2598 4480 3.201290 GTCTATGCAAGTGTGGATCCTG 58.799 50.000 14.23 3.21 37.04 3.86
2599 4481 2.840038 TGTCTATGCAAGTGTGGATCCT 59.160 45.455 14.23 0.00 37.04 3.24
2600 4482 2.939103 GTGTCTATGCAAGTGTGGATCC 59.061 50.000 4.20 4.20 37.04 3.36
2601 4483 3.599343 TGTGTCTATGCAAGTGTGGATC 58.401 45.455 0.00 0.00 37.04 3.36
2602 4484 3.701205 TGTGTCTATGCAAGTGTGGAT 57.299 42.857 0.00 0.00 39.45 3.41
2603 4485 3.483808 TTGTGTCTATGCAAGTGTGGA 57.516 42.857 0.00 0.00 0.00 4.02
2604 4486 3.752747 TGATTGTGTCTATGCAAGTGTGG 59.247 43.478 0.00 0.00 0.00 4.17
2605 4487 5.353400 AGATGATTGTGTCTATGCAAGTGTG 59.647 40.000 0.00 0.00 0.00 3.82
2606 4488 5.494724 AGATGATTGTGTCTATGCAAGTGT 58.505 37.500 0.00 0.00 0.00 3.55
2607 4489 6.432607 AAGATGATTGTGTCTATGCAAGTG 57.567 37.500 0.00 0.00 0.00 3.16
2608 4490 6.883217 AGAAAGATGATTGTGTCTATGCAAGT 59.117 34.615 0.00 0.00 0.00 3.16
2609 4491 7.317842 AGAAAGATGATTGTGTCTATGCAAG 57.682 36.000 0.00 0.00 0.00 4.01
2610 4492 7.148188 GGAAGAAAGATGATTGTGTCTATGCAA 60.148 37.037 0.00 0.00 0.00 4.08
2611 4493 6.317140 GGAAGAAAGATGATTGTGTCTATGCA 59.683 38.462 0.00 0.00 0.00 3.96
2612 4494 6.317140 TGGAAGAAAGATGATTGTGTCTATGC 59.683 38.462 0.00 0.00 0.00 3.14
2613 4495 7.854557 TGGAAGAAAGATGATTGTGTCTATG 57.145 36.000 0.00 0.00 0.00 2.23
2614 4496 7.013083 GCATGGAAGAAAGATGATTGTGTCTAT 59.987 37.037 0.00 0.00 0.00 1.98
2615 4497 6.317140 GCATGGAAGAAAGATGATTGTGTCTA 59.683 38.462 0.00 0.00 0.00 2.59
2616 4498 5.125097 GCATGGAAGAAAGATGATTGTGTCT 59.875 40.000 0.00 0.00 0.00 3.41
2617 4499 5.106038 TGCATGGAAGAAAGATGATTGTGTC 60.106 40.000 0.00 0.00 0.00 3.67
2618 4500 4.768448 TGCATGGAAGAAAGATGATTGTGT 59.232 37.500 0.00 0.00 0.00 3.72
2619 4501 5.319140 TGCATGGAAGAAAGATGATTGTG 57.681 39.130 0.00 0.00 0.00 3.33
2620 4502 5.655090 TGATGCATGGAAGAAAGATGATTGT 59.345 36.000 2.46 0.00 0.00 2.71
2621 4503 6.144078 TGATGCATGGAAGAAAGATGATTG 57.856 37.500 2.46 0.00 0.00 2.67
2622 4504 6.785337 TTGATGCATGGAAGAAAGATGATT 57.215 33.333 2.46 0.00 0.00 2.57
2623 4505 6.683110 GCTTTGATGCATGGAAGAAAGATGAT 60.683 38.462 19.30 0.00 0.00 2.45
2624 4506 5.393787 GCTTTGATGCATGGAAGAAAGATGA 60.394 40.000 19.30 0.00 0.00 2.92
2625 4507 4.804139 GCTTTGATGCATGGAAGAAAGATG 59.196 41.667 19.30 1.94 0.00 2.90
2626 4508 4.464951 TGCTTTGATGCATGGAAGAAAGAT 59.535 37.500 19.30 0.00 38.12 2.40
2627 4509 3.827876 TGCTTTGATGCATGGAAGAAAGA 59.172 39.130 19.30 7.15 38.12 2.52
2628 4510 4.174009 CTGCTTTGATGCATGGAAGAAAG 58.826 43.478 18.20 13.71 42.48 2.62
2629 4511 3.056393 CCTGCTTTGATGCATGGAAGAAA 60.056 43.478 18.20 7.93 42.48 2.52
2630 4512 2.494471 CCTGCTTTGATGCATGGAAGAA 59.506 45.455 18.20 9.91 42.48 2.52
2631 4513 2.097036 CCTGCTTTGATGCATGGAAGA 58.903 47.619 18.20 6.68 42.48 2.87
2632 4514 1.470979 GCCTGCTTTGATGCATGGAAG 60.471 52.381 2.46 9.09 42.48 3.46
2633 4515 0.533491 GCCTGCTTTGATGCATGGAA 59.467 50.000 2.46 0.00 42.48 3.53
2634 4516 0.323999 AGCCTGCTTTGATGCATGGA 60.324 50.000 2.46 0.00 42.48 3.41
2635 4517 0.535335 AAGCCTGCTTTGATGCATGG 59.465 50.000 2.46 0.00 42.48 3.66
2636 4518 1.640428 CAAGCCTGCTTTGATGCATG 58.360 50.000 2.46 0.00 42.48 4.06
2637 4519 0.108329 GCAAGCCTGCTTTGATGCAT 60.108 50.000 0.00 0.00 45.74 3.96
2638 4520 1.290955 GCAAGCCTGCTTTGATGCA 59.709 52.632 0.70 0.00 45.74 3.96
2639 4521 4.180496 GCAAGCCTGCTTTGATGC 57.820 55.556 0.70 0.00 45.74 3.91
2647 4529 2.931512 TTATTTTACCGCAAGCCTGC 57.068 45.000 0.00 0.00 45.75 4.85
2648 4530 4.370364 ACATTATTTTACCGCAAGCCTG 57.630 40.909 0.00 0.00 0.00 4.85
2649 4531 5.400066 AAACATTATTTTACCGCAAGCCT 57.600 34.783 0.00 0.00 0.00 4.58
2650 4532 6.367695 AGAAAAACATTATTTTACCGCAAGCC 59.632 34.615 0.00 0.00 32.85 4.35
2651 4533 7.346208 AGAAAAACATTATTTTACCGCAAGC 57.654 32.000 0.00 0.00 32.85 4.01
2654 4536 8.480853 CGAAAAGAAAAACATTATTTTACCGCA 58.519 29.630 0.00 0.00 32.85 5.69
2655 4537 8.692615 TCGAAAAGAAAAACATTATTTTACCGC 58.307 29.630 0.00 0.00 32.85 5.68
2663 4545 9.899226 CCTCTCTTTCGAAAAGAAAAACATTAT 57.101 29.630 12.41 0.00 46.98 1.28
2664 4546 9.116067 TCCTCTCTTTCGAAAAGAAAAACATTA 57.884 29.630 12.41 0.00 46.98 1.90
2665 4547 7.996385 TCCTCTCTTTCGAAAAGAAAAACATT 58.004 30.769 12.41 0.00 46.98 2.71
2666 4548 7.568199 TCCTCTCTTTCGAAAAGAAAAACAT 57.432 32.000 12.41 0.00 46.98 2.71
2667 4549 6.995511 TCCTCTCTTTCGAAAAGAAAAACA 57.004 33.333 12.41 0.00 46.98 2.83
2668 4550 7.640630 GTCTTCCTCTCTTTCGAAAAGAAAAAC 59.359 37.037 12.41 4.36 46.98 2.43
2669 4551 7.201705 GGTCTTCCTCTCTTTCGAAAAGAAAAA 60.202 37.037 12.41 11.87 46.98 1.94
2670 4552 6.260271 GGTCTTCCTCTCTTTCGAAAAGAAAA 59.740 38.462 12.41 12.14 46.98 2.29
2671 4553 5.758784 GGTCTTCCTCTCTTTCGAAAAGAAA 59.241 40.000 12.41 8.77 45.76 2.52
2672 4554 5.298347 GGTCTTCCTCTCTTTCGAAAAGAA 58.702 41.667 12.41 8.86 37.01 2.52
2673 4555 4.262506 GGGTCTTCCTCTCTTTCGAAAAGA 60.263 45.833 12.41 15.03 0.00 2.52
2674 4556 3.997681 GGGTCTTCCTCTCTTTCGAAAAG 59.002 47.826 12.41 11.86 0.00 2.27
2675 4557 3.244457 GGGGTCTTCCTCTCTTTCGAAAA 60.244 47.826 12.41 2.66 35.33 2.29
2676 4558 2.302157 GGGGTCTTCCTCTCTTTCGAAA 59.698 50.000 10.71 10.71 35.33 3.46
2677 4559 1.900486 GGGGTCTTCCTCTCTTTCGAA 59.100 52.381 0.00 0.00 35.33 3.71
2678 4560 1.558233 GGGGTCTTCCTCTCTTTCGA 58.442 55.000 0.00 0.00 35.33 3.71
2679 4561 0.173708 CGGGGTCTTCCTCTCTTTCG 59.826 60.000 0.00 0.00 35.33 3.46
2680 4562 0.537653 CCGGGGTCTTCCTCTCTTTC 59.462 60.000 0.00 0.00 35.33 2.62
2681 4563 1.554583 GCCGGGGTCTTCCTCTCTTT 61.555 60.000 2.18 0.00 35.33 2.52
2682 4564 1.990614 GCCGGGGTCTTCCTCTCTT 60.991 63.158 2.18 0.00 35.33 2.85
2683 4565 2.364448 GCCGGGGTCTTCCTCTCT 60.364 66.667 2.18 0.00 35.33 3.10
2684 4566 3.471806 GGCCGGGGTCTTCCTCTC 61.472 72.222 2.18 0.00 35.33 3.20
2685 4567 3.986116 GAGGCCGGGGTCTTCCTCT 62.986 68.421 14.36 0.00 41.35 3.69
2686 4568 3.471806 GAGGCCGGGGTCTTCCTC 61.472 72.222 2.18 5.59 38.40 3.71
2687 4569 4.012721 AGAGGCCGGGGTCTTCCT 62.013 66.667 2.18 0.00 35.33 3.36
2688 4570 3.787001 CAGAGGCCGGGGTCTTCC 61.787 72.222 2.18 0.00 0.00 3.46
2689 4571 4.475135 GCAGAGGCCGGGGTCTTC 62.475 72.222 2.18 0.00 0.00 2.87
2692 4574 4.554036 GATGCAGAGGCCGGGGTC 62.554 72.222 2.18 0.00 40.13 4.46
2694 4576 4.864334 GTGATGCAGAGGCCGGGG 62.864 72.222 2.18 0.00 40.13 5.73
2695 4577 4.100084 TGTGATGCAGAGGCCGGG 62.100 66.667 2.18 0.00 40.13 5.73
2696 4578 2.809861 AAGTGTGATGCAGAGGCCGG 62.810 60.000 0.00 0.00 40.13 6.13
2697 4579 0.957395 AAAGTGTGATGCAGAGGCCG 60.957 55.000 0.00 0.00 40.13 6.13
2698 4580 2.113860 TAAAGTGTGATGCAGAGGCC 57.886 50.000 0.00 0.00 40.13 5.19
2699 4581 5.818136 TTAATAAAGTGTGATGCAGAGGC 57.182 39.130 0.00 0.00 41.68 4.70
2747 4629 3.838317 TGGCTTCAGACTTACTGGTGTAT 59.162 43.478 0.00 0.00 45.76 2.29
2752 4634 1.347707 TGGTGGCTTCAGACTTACTGG 59.652 52.381 0.00 0.00 45.76 4.00
2795 4677 4.540099 ACCCCTTCATCAAGTGGATAGAAA 59.460 41.667 0.00 0.00 31.72 2.52
2830 4712 4.623171 CGAGGTCTGTTTGGTATTAGGCTT 60.623 45.833 0.00 0.00 0.00 4.35
2861 4743 4.164413 GGCCTCCTCTTTTAGATGTTAGGT 59.836 45.833 0.00 0.00 0.00 3.08
2889 4771 2.705658 CCAGACCAGGTATATGGCTTGA 59.294 50.000 0.00 0.00 44.80 3.02
2924 4806 2.983592 TCTCTGTGAGTGCGCCGA 60.984 61.111 4.18 0.00 0.00 5.54
2948 4830 0.876342 GGATCGGTGGAAGATGACGC 60.876 60.000 0.00 0.00 0.00 5.19
3088 4970 3.225104 TCAGCCTGACTGCAATCTTTTT 58.775 40.909 0.00 0.00 46.76 1.94
3089 4971 2.867624 TCAGCCTGACTGCAATCTTTT 58.132 42.857 0.00 0.00 46.76 2.27
3090 4972 2.574006 TCAGCCTGACTGCAATCTTT 57.426 45.000 0.00 0.00 46.76 2.52
3091 4973 2.803030 ATCAGCCTGACTGCAATCTT 57.197 45.000 0.00 0.00 46.76 2.40
3092 4974 3.920231 TTATCAGCCTGACTGCAATCT 57.080 42.857 0.00 0.00 46.76 2.40
3093 4975 5.303971 ACTATTATCAGCCTGACTGCAATC 58.696 41.667 0.00 0.00 46.76 2.67
3094 4976 5.301835 ACTATTATCAGCCTGACTGCAAT 57.698 39.130 0.00 0.00 46.76 3.56
3095 4977 4.697514 GACTATTATCAGCCTGACTGCAA 58.302 43.478 0.00 0.00 46.76 4.08
3096 4978 3.243535 CGACTATTATCAGCCTGACTGCA 60.244 47.826 0.00 0.00 46.76 4.41
3097 4979 3.004839 TCGACTATTATCAGCCTGACTGC 59.995 47.826 0.00 0.00 46.76 4.40
3098 4980 9.783533 GTCACTCGACTATTATCAGCCTGACTG 62.784 48.148 0.00 0.00 42.43 3.51
3099 4981 4.277174 CACTCGACTATTATCAGCCTGACT 59.723 45.833 0.00 0.00 0.00 3.41
3100 4982 4.276183 TCACTCGACTATTATCAGCCTGAC 59.724 45.833 0.00 0.00 0.00 3.51
3101 4983 4.276183 GTCACTCGACTATTATCAGCCTGA 59.724 45.833 0.00 0.00 39.22 3.86
3102 4984 4.036852 TGTCACTCGACTATTATCAGCCTG 59.963 45.833 0.00 0.00 43.06 4.85
3103 4985 4.207955 TGTCACTCGACTATTATCAGCCT 58.792 43.478 0.00 0.00 43.06 4.58
3104 4986 4.569761 TGTCACTCGACTATTATCAGCC 57.430 45.455 0.00 0.00 43.06 4.85
3105 4987 7.364200 AGTAATGTCACTCGACTATTATCAGC 58.636 38.462 0.00 0.00 43.06 4.26
3106 4988 9.388346 GAAGTAATGTCACTCGACTATTATCAG 57.612 37.037 0.00 0.00 43.06 2.90
3107 4989 8.068380 CGAAGTAATGTCACTCGACTATTATCA 58.932 37.037 0.00 0.00 43.06 2.15
3108 4990 8.068977 ACGAAGTAATGTCACTCGACTATTATC 58.931 37.037 0.00 0.00 41.94 1.75
3109 4991 7.928103 ACGAAGTAATGTCACTCGACTATTAT 58.072 34.615 0.00 0.00 41.94 1.28
3110 4992 7.312657 ACGAAGTAATGTCACTCGACTATTA 57.687 36.000 0.00 0.00 41.94 0.98
3111 4993 6.192234 ACGAAGTAATGTCACTCGACTATT 57.808 37.500 0.00 0.00 41.94 1.73
3112 4994 5.814764 ACGAAGTAATGTCACTCGACTAT 57.185 39.130 0.00 0.00 41.94 2.12
3131 5013 0.321564 TCCTTAGTTCGGACCGACGA 60.322 55.000 18.12 0.00 41.76 4.20
3132 5014 0.523072 TTCCTTAGTTCGGACCGACG 59.477 55.000 18.12 2.83 34.89 5.12
3133 5015 2.426381 AGATTCCTTAGTTCGGACCGAC 59.574 50.000 18.12 12.01 34.89 4.79
3134 5016 2.426024 CAGATTCCTTAGTTCGGACCGA 59.574 50.000 13.88 13.88 0.00 4.69
3135 5017 2.165845 ACAGATTCCTTAGTTCGGACCG 59.834 50.000 7.84 7.84 0.00 4.79
3136 5018 3.889520 ACAGATTCCTTAGTTCGGACC 57.110 47.619 0.00 0.00 0.00 4.46
3137 5019 6.205101 TCTAACAGATTCCTTAGTTCGGAC 57.795 41.667 0.00 0.00 0.00 4.79
3138 5020 6.662234 TCTTCTAACAGATTCCTTAGTTCGGA 59.338 38.462 0.00 0.00 0.00 4.55
3139 5021 6.864342 TCTTCTAACAGATTCCTTAGTTCGG 58.136 40.000 0.00 0.00 0.00 4.30
3140 5022 7.008447 CGTTCTTCTAACAGATTCCTTAGTTCG 59.992 40.741 0.00 0.00 0.00 3.95
3141 5023 7.201453 GCGTTCTTCTAACAGATTCCTTAGTTC 60.201 40.741 0.00 0.00 0.00 3.01
3142 5024 6.590677 GCGTTCTTCTAACAGATTCCTTAGTT 59.409 38.462 0.00 0.00 0.00 2.24
3143 5025 6.100668 GCGTTCTTCTAACAGATTCCTTAGT 58.899 40.000 0.00 0.00 0.00 2.24
3144 5026 5.520649 GGCGTTCTTCTAACAGATTCCTTAG 59.479 44.000 0.00 0.00 0.00 2.18
3145 5027 5.416947 GGCGTTCTTCTAACAGATTCCTTA 58.583 41.667 0.00 0.00 0.00 2.69
3146 5028 4.254492 GGCGTTCTTCTAACAGATTCCTT 58.746 43.478 0.00 0.00 0.00 3.36
3147 5029 3.676324 CGGCGTTCTTCTAACAGATTCCT 60.676 47.826 0.00 0.00 0.00 3.36
3148 5030 2.603560 CGGCGTTCTTCTAACAGATTCC 59.396 50.000 0.00 0.00 0.00 3.01
3149 5031 3.508762 TCGGCGTTCTTCTAACAGATTC 58.491 45.455 6.85 0.00 0.00 2.52
3150 5032 3.192844 TCTCGGCGTTCTTCTAACAGATT 59.807 43.478 6.85 0.00 0.00 2.40
3151 5033 2.753452 TCTCGGCGTTCTTCTAACAGAT 59.247 45.455 6.85 0.00 0.00 2.90
3152 5034 2.095364 GTCTCGGCGTTCTTCTAACAGA 60.095 50.000 6.85 0.00 0.00 3.41
3153 5035 2.095161 AGTCTCGGCGTTCTTCTAACAG 60.095 50.000 6.85 0.00 0.00 3.16
3154 5036 1.884579 AGTCTCGGCGTTCTTCTAACA 59.115 47.619 6.85 0.00 0.00 2.41
3155 5037 2.517935 GAGTCTCGGCGTTCTTCTAAC 58.482 52.381 6.85 0.00 0.00 2.34
3156 5038 1.471684 GGAGTCTCGGCGTTCTTCTAA 59.528 52.381 6.85 0.00 0.00 2.10
3157 5039 1.093159 GGAGTCTCGGCGTTCTTCTA 58.907 55.000 6.85 0.00 0.00 2.10
3158 5040 0.894184 TGGAGTCTCGGCGTTCTTCT 60.894 55.000 6.85 0.00 0.00 2.85
3159 5041 0.733223 GTGGAGTCTCGGCGTTCTTC 60.733 60.000 6.85 3.51 0.00 2.87
3160 5042 1.179814 AGTGGAGTCTCGGCGTTCTT 61.180 55.000 6.85 0.00 0.00 2.52
3161 5043 1.604023 AGTGGAGTCTCGGCGTTCT 60.604 57.895 6.85 3.76 0.00 3.01
3242 5213 3.432051 GAGGGACCAGCGGACATCG 62.432 68.421 1.50 0.00 42.76 3.84
3244 5215 3.461773 CGAGGGACCAGCGGACAT 61.462 66.667 1.50 0.00 0.00 3.06
3353 5325 6.826632 TCTAGACCTCTATCTGTTACCTCA 57.173 41.667 0.00 0.00 0.00 3.86
3390 5362 5.463724 GTGTCGTTCTCTTCTTGAAGACATT 59.536 40.000 8.80 0.00 35.85 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.