>input_sequence_50851
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-------------------------------------------------------------------ATGGCGACGCAAG
AAAAAGAAGAGGCACCCCACGCCGTCGGCCGCCGGGTCGTCTTGTTCCCGCTGCCGTTCCAGGGCCACCTCAGCCCCATG
CTCCAGCTGGCCGAGCTCCTCCGCGCCCGCGGCCTGCCCGTCACCGTCCTCCACACCGACTTCAACGCGCCTGACCCTAC
ACGGCACCCAGAGCTTGCCTTCGTCCCGATCCACGAGGCGCTTCCCACCTCAGCCACCTCCCCCGACGCCGACATCGTCG
CGCAGCTCCTGGCCCTCAACAGCGGTTGCGAGGCGCCCTTCCGGGAGGCCCTGGCATCGCTGCTGCGC---CGCGAGGAC
GTGGCCTGCGCCGTCGTCGACGGGCAGTGGTACGCGGCGCTGGGGGCGGCGAGCGCGCTCGGCGTCCCCGTGCTCGCGCT
CCGCACGGACAGCGCCGCCACGTTCGGCAGCTTGCTTGCGTTCCCTCGGCTGCGCGACGCCGGCTACGTCCCAATCAAAG
GCAAGTCGTGGTGCGAGTTCATTGAATTGAATTCGACGTACTCAACCTTGGAG----CGCATGTATCGATGGATGCTTGT
GAACTTTGTGTGCAGTTGCAGAGGAGCGACGG---GACGAGCTTGTGCCGGAGCTGGAGCCGCTCCGCGTGCGCGACCTC
ATCCGCATCGACGGCAGCGACGTGGACGCGCTGTGCGGCTTCATCTCCCGCGTCGCCGACGCCGCGCGGGCCTCCGCGTC
AGGGGTCGTGCTCAACTCGTTCGACGCCATCGAGGCGCCGGAGCTGGCCAGGATAGAGAAGGAGCTGTCCTGTCCGGCGT
TCGCGGTCGGCCCGCTGCACAGGATGTGCCCCGGGCCGGCACCGGCGGAGCACGGCCTGCACGCGCCAGACCGCGGCTGC
CTGGCGTGGCTGGACGCGCACCCGGCGCGCTCCGTGCTGTACGTGAGCCTGGGGAGCGTCGCTCGCGTCGACCGCGGCGT
GTTCGAGGAGATGGCGTGGGGGCTGGCGGGCAGCGGCGTGCCGTTCCTGTGGGTCGTCCGGCCCGGCTCCGTTCGCGGCG
GCGGCGCCGACGAACCACCCAACGGGCTCGACGAGGAAGCCAGGAGCAGGGGGAAGGTGGTGGCATGGGCGCCGCAGCTG
GAGGTCCTGGCCCACGAGGCCGTCGGCGCCTTCTGGACGCACTGCGGCTGGAACTCAACGCTGGAGAGCGTGTGCGCCGG
CGTGCCGATGCTCGCGCAGCCGTGCTTCGCGGACCAGACGGTGAACGCGAGGTACGTGACGCACCGGTGGGGCGTCGGGC
TGGAGGTGGGAGACGTGATCGACAGGGTCAGGGTCGCCGAGAGGGTGAGGATGGTGATGCTCGGGGAAGAAGGGGATCGG
GCGAGGGAGAAGGTGCGTGACCTCAAGCTGCAAGCAGACCAGTGTGTTGCTGCTAGTTTGGCCGTCGACAATCTCGTGCG
GTACGTGCTGTCACTCTGA-------------------------------------------------------------
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-------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G027300
CCAAG---------------------------------------------------------------------------
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----------------------------CAGGCGCAATAGCTAGCCCATGCACTCTACCAATTCTATCATGGCACC----
--------------------GTCAGGCTGTGGTACCTCTTCTCACAGCCGTTGCGGGGTTGAAAAATGTGGCATATGTGG
TGCCCTTTTGTTGCTGAACATTGTTGTGTGTGCTCAACTCAAAGCTATGCTGGTAAATTGTTTGATTAATTGGCTTACTG
AAGTTTTAATGGGTC---TAGTTAAGTACGCCCATTGTAGCTCC----ACACCTGTACCATTTCTAATTAAACCCT-TGT
TAGAAACTGCATGTCCAGTT------------------------------------------------------------
-----------------------------------------------TCTGATCTGGGGCAGAAGGGGCGTGTCTAGTTT
CTCCAGTTCATCTGTGATGCAGCACATGTACTGAGAGAGACTGCAGAAGAGCAGAAAACTAGGCTTCCTACTTGTAGAAG
GTTCAGAGATGAAAGCCTGAAGCATGATCACTGCAGACTGTATCTGCAATTGTAATCCGGGTCTGGGACTAGAGTACGCA
CGCAACCCGGATTTTGTGCACA--TGGTTGCACCTTGAACCTAGCTATCTTACACCCTCTGTACCTACTGTACATTTCTT
TTTCTTTTTTTGAAGAAAAGTAAAATTCAAAGATCATGCTGATTTTGTTGTTGTTGTTGGAAATTTGAGGCAAATACGAA
AAGCAGATTCGGACATTTTGAATAGTGAATGGTATCCTGTTCAGAGGCTCAGA-TTTTCTTCTTCTTCCCGCAGGGCGCT
TGCATTCATATG--TGCAACAACTTTTGCCAAATAATCAGTATGATAAAATGG--GTAGATGCCCATACATCAAGATGCT
AATTATTTGATTAATTTGCTGACAGGTCCAATATAAAAAATACTAAGTATAGTACATGGGCTGCTACCTTTGCTAAGTCG
CTCAAAATAAACAAAAAAAATACTACACCACTCCTCCGCTTGGTAAGGGAAGCTAGCTGCGTGCTTACAATAATCGATCG
ATCCCCGTCCGCCTCATTGCTTGTGCTTTGGTGTGG------------------CTAGCCGGCGACGATGGCGACGCAAG
AAAAAGAAGAGGCACCCCACGCCGTCGGCCGCCGGGTCGTCTTGTTCCCGCTGCCGTTCCAGGGCCACCTCAGCCCCATG
CTCCAGCTGGCCGAGCTCCTCCGCGCCCGCGGCCTGCCCGTCACCGTCCTCCACACCGACTTCAACGCGCCTGACCCTAC
ACGGCACCCAGAGCTTGCCTTCGTCCCGATCCACGAGGCGCTTCCCACCTCAGCCACCTCCCCCGACGCCGACATCGTCG
CGCAGCTCCTGGCCCTCAACAGCGGTTGCGAGGCGCCCTTCCGGGAGGCCCTGGCATCGCTGCTGCGC---CGCGAGGAC
GTGGCCTGCGCCGTCGTCGACGGGCAGTGGTACGCGGCGCTGGGGGCGGCGAGCGCGCTCGGCGTCCCCGTGCTCGCGCT
CCGCACGGACAGCGCCGCCACGTTCGGCAGCTTGCTTGCGTTCCCTCGGCTGCGCGACGCCGGCTACGTCCCAATCAAAG
GCAAGTCGTGGTGCGAGTTCATTGAATTGAATTCGACGTACTCAACCTTGGAG----CGCATGTATCGATGGATGCTTGT
GAACTTTGTGTGCAGTTGCAGAGGAGCGACGG---GACGAGCTTGTGCCGGAGCTGGAGCCGCTCCGCGTGCGCGACCTC
ATCCGCATCGACGGCAGCGACGTGGACGCGCTGTGCGGCTTCATCTCCCGCGTCGCCGACGCCGCGCGGGCCTCCGCGTC
AGGGGTCGTGCTCAACTCGTTCGACGCCATCGAGGCGCCGGAGCTGGCCAGGATAGAGAAGGAGCTGTCCTGTCCGGCGT
TCGCGGTCGGCCCGCTGCACAGGATGTGCCCCGGGCCGGCACCGGCGGAGCACGGCCTGCACGCGCCAGACCGCGGCTGC
CTGGCGTGGCTGGACGCGCACCCGGCGCGCTCCGTGCTGTACGTGAGCCTGGGGAGCGTCGCTCGCGTCGACCGCGGCGT
GTTCGAGGAGATGGCGTGGGGGCTGGCGGGCAGCGGCGTGCCGTTCCTGTGGGTCGTCCGGCCCGGCTCCGTTCGCGGCG
GCGGCGCCGACGAACCACCCAACGGGCTCGACGAGGAAGCCAGGAGCAGGGGGAAGGTGGTGGCATGGGCGCCGCAGCTG
GAGGTCCTGGCCCACGAGGCCGTCGGCGCCTTCTGGACGCACTGCGGCTGGAACTCAACGCTGGAGAGCGTGTGCGCCGG
CGTGCCGATGCTCGCGCAGCCGTGCTTCGCGGACCAGACGGTGAACGCGAGGTACGTGACGCACCGGTGGGGCGTCGGGC
TGGAGGTGGGAGACGTGATCGACAGGGTCAGGGTCGCCGAGAGGGTGAGGATGGTGATGCTCGGGGAAGAAGGGGATCGG
GCGAGGGAGAAGGTGCGTGACCTCAAGCTGCAAGCAGACCAGTGTGTTGCTGCTAGTTTGGCCGTCGACAATCTCGTGCG
GTACGTGCTGTCACTCTGAGTC----GCCGGCCGGCTTCTCTACACGATTCTCCCCGTGATATTGAATAATGATCTCATC
GGTGAATCATCGTCAGCGATGCCCTGAGAAAAAAAAATGACACCGCTTCGGCAATGTGTGCTTGCAGTATGTGTAAAAGC
AGGATCCACACTTGCATAGACACAATCATCTTTCTTCCATGCATCAAAGCAGGCTTGCGGTAAAATAATGTTTTTCTTTT
CGAAAGAGAGGAAGACCCCGGCCTCTGCATCACACTTTATTAATTATTCATAAAAACTTTATAAAGTAATACACCAGTAA
GTCTGAAGCCACCATCTTAACAACATCTGTCGCTATTTTCTATCCACTTGATGAAGGGGTGCCGATAGTCCAAGCCTAAT
ACCAAACAGACCTCGCACCTAAACCTAACATCTAAAAGAGGAGGCCTCAGTCAAGCCATATACCTGGTCTGGGGCACACA
CCAGTTCGGCGCACTCACAGAGACCGCCGGCGTCATCTTCCACCGATCCATCTTCAGAGCAGGTACTGACACCACGACCA
TGCCAGGTCTGCCATCAACGCCACCACGACGCCAGACAGCGCCATCCTCCCGCGTGAGTCCGTCTACACACATCAATCCT
TACCGACAAAAAAAGATTGCAGTCAGGCTGATAATAGTCGAGTGACATTACTTCGTCGGTCCGAACTAAGGAATCTGTTA
GAAGA---------------------------------------------------------------------------
--------------ACGCCGAGACTCCACTGCGCCACGCCACCGAGATCCACAGTCGTCGATGCGTAAGATGAAACACCG
CTCCACCAAAGACGATGTCCGCTGGTCCCTCGAGCCCATGCACACCTCCAAGACTGACGCCCCCAAGGGGGAAACGACGC
AAGAGCGCCGCCGTCATCCGATCTACCGATCTAGGGTT-TCCCCTGAGGTAACAGATAGAGGTCTAGAACTTCTCCACGA
CAATGTCTTCAAGAAGAGAACGACACAGAAGAGAGACGCCATCGTCGGCCTTGGCATCTAGCCGAGTGCAAGG
>chr5D_1
AAATTGTTTGATTAATTGGCTTACTGAAGTATTAATGGGTCCAGTTAAGTACACCTGTGGCAGTTTTGACGCCTGTAGCT
GTTGCATCTCTAATCATTCTATCAACTGAATGAAAGGTCATAGCTAGAATTATCGCCATGACATTTGTATACAACTGCAA
TTAAAAAAAACAGGCAAGAACATTACTACTAATATCTCATCCATGAGTTCCATTCAACCTGGGCAAGGAGAGGCATGTCT
GGTTTCTCTCTGTGATGGGCTATTTCTGGGCAACAACTCATCACAAAGAGGCTGCTCAAACTGTCATGGAACAGCAGAAA
ACTCACTCGGCGTCCTACTTGAAGTAGGTTCAGAGTTGAAAGCCTGAAACTCTGCAGTTGTGGTCCATGTCTGGGACACA
AGTACATACACATGCAGACATGGATTTTGGGCACACAGTTGCGCATTACTACAAAAATTGTATTTTTTGAAAAAATAATA
TCAAAGCCCTTGTTGAAATTTTGTCGGGTTTGAAAGTTTGCGGCAACAAGAAAACAAATCCGTCCCTCGCAAAATAGAAT
AAAATAATTCATACATATGCTGTTCAGAGGCTTCAGTTTCTTCTTCTTTCTGCAGAGCGCTTGCATTCATATTTTTGCAA
AATATTATGATCAAATGCCCATACCAAATTTCCACAGATGGCCATATATCATGATACTAATTATTTGATTAATTTGCTCA
GTATGATGGCATGTCCCAACAACATCGTCCATAACATCCCAGAAGACGAGCTTGCAAAGCATGCCAAGTACTCCCTCTGT
GAACTAATATAAGAGCGTTTAGATCACTAAAGTAGTGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTTCCGC
AACATGTACCACCAATCAAAGAAGACAACCGAGAAGATGTTCGCCTACGAGCACCTCATCGACCAGTACAAGATCAGGGG
CTATGCAGAGGACGAGTCGGAGGTCACTGACGACGACGACGAGGAGGCCATGGAGAACTAGCTTGGCATCAATCAAAGCC
TCCGTGTGTGCAGTACAGTGCAAACCTAGTTGATCATCTTCTGAGCATGACAGAAACCTTGGATAATGAGCAGTTTTATG
TCTGCATGGGTGCAAAGATTTATCAGAACTACTGAAGCCTCTCCCTGTCAATGCCTGCTGACAACTGATCTCATCCACCA
CCAATATTTTTTTTTCCTTTTGATGAGAGTGCATGACAGGTGAGCTGCCATTGTGGAACTGTTATTCTTAGATGTAGTGT
GTTGCTCATCATGTGTGTACATGTGAGTTGTGACAGGTCAAAGTCAAACTTTTTTGTTTTTTAGAATTTTTATTTGCTAG
TGTTATCTGGCATCATTTTCTTGGGTCAACTTATCTATAAATGTGGCCGTATGCATCGTTCTGATGCAGAGGCCGGGGAG
TCCCCCCTTTTCGAAAAAAAAAATCTTGGGTCAACTCTGATCTATACATAAATGCTCATCAGATGGCCCACGGCTCATGG
CTGAGCTGATAAGGAAAAAAGGAAAAATAATAACAAGTAAAGCAAGCTGCATCACAATTTACCATGACAAGAATTTTGGT
TGGTGAAACATTTTTTCTACTTCCAAAATTCCTGCAAAATTCTTGTCGAATTTCAAACAGGGCCGCAGAAAACAGAAAAG
GAGGTGGAAATTGCAGAGCTTTACCAACCAGGCGCAATAGCTAGCCTATGCACTCTACCAATTCTATCATGGCACCCAAC
AAAAACAGCTTTGTTGGCAGGTCAGGCTGTAGTACCTCTTCTCACAGCCATTGCAGGGTTGAAAAAGGTGGCATATATGG
TGCCTTTTTGTTGCTGAATATTGTTGTGTGTGCTCAACTCAAAGCTATGCTGGTTAATTGTTTGATTAATTGGCTTGCTC
AAGTTTTAATGGGTCGTCTAGTTAAGTACAACTGTCGTAGGGTAGCTGACACCTGAACCATTTCTAATTAAACCCCATGT
TAGAAACTGCATGCCTAATCATTCTATCAACTGAATGAAGGATCACCATTAGAAGTATTGCCGTGGCATTTGTATACAAG
TGGCAATTCAAAAAGAAAATGCAGGCAAGAACACTACTACTGAAGTATCTGATCTGGGCCAGAAGAGGCATGTCTAGTTT
CTCCAGTTCATCTCTGATGCAGCACAGGTACTGAGAGAGACTGCAGAAGAGCAGAAAACTAGGCTTCCTACTTGTAGAAG
GTTCAGAGCTGAAAGCCTGAAGCATGATCACTGCAGACTGTATCTGCAATTGTCGTCC-GGTCTGGGACTAGAGTACACG
TGCAACCTGGATTTTGTGCACGGTTGGCTGCACGTTGAAC----CTATCTTGCATCCTCTATACCTACTATAAAATTTCC
TT--TTTTTTTGAAGCAAAATAAAATTCAAAGATCATGTTGATATTTTTTGGA--GTTAGAAATTTGAGGCAAATAAGAA
AAATAGATTCGTACATTTTGAATAGTGAATGATATGTTGTTCAGAGGCTTAGGTTTTTCTTCTTCTTTCCGCAGGGCGCT
TGCATTCGTATGTCTGCAATAACTTTTGCCAAATAT----TATGATAAAATTCCTGTAGATGCCCATATACCAAGATGCT
AATTAATTT-----------------------------------------------------------------------
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>chr5D_842
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--------------------------------------------------AGTACATGGGCTGCTACCTTTGCTAAGTCG
CTCAAAATAAAT--AAAAAATACTACACCACTCCTCCGCTTGCTAC---------GCTGCGTGCTTACAATAGTCGATCG
ATTCCCGTCG---TCATTGATCGTGCTTTGGTACGCTAGCCACCAGCATCTAGTCTAGCCGGCGACGATGGCGACGCAAG
AAATAGAAAAGGCACCCCACGCCGTCCGCCGCCGGGTCGTCTTGTTCCCGCTGCCGTTCCAGGGCCACCTCAGCCCCATG
CTCCAGCTAGCCGAGCTCCTCCGCGCCCGCGGCCTGGCCGTCACCGTCCTCCACACCGACTTCAACGCGCCCGACCCCGC
GCGCCATCCGGAGCTCGCCTTCGTCTCGATCCACGAGGCGCTCCCGCACGAGGCCACCTCCCCCGACGCCGACATCGTCG
CGCAGCTCCTGGCCCTCAACAGCGGTTGCGAGGCGCCGTTCCGGGAGGCCCTGGCATCGCTGCTGCTGCTGCGCGAGGAC
GTCGCCTGCGTGGTCGTCGACGGGCAGTGGTACGCGGCGCTGGGGGCGGCGGGCGCGCTCGGCGTCCCCGTGCTCGCGCT
CCGGACGGACAGCGCCGCCACGTTCGGCAGCTTGCTTGCGTTCCCTCGCCTGCGCGACGCCGGCTACGTCCCGATCAAAG
GCAAGTGCTGGTGCGAGCTAATTGAATTCGT----ACGTACTCAACCTTGGAGGGAGCGCATGGGTCGATTGATGCTTGA
GAAGTTTTTCTGCAGA---AGAGGAGCGACGGGACGACGAGCTCGTGCCGGAGCTGGAGCCGCTCCGCGTGCGCGACCTC
ATCCGCATCGACGGCAGCGACGTGGACGCGCTGCGCGGCTTCATCGCCCGCGTCGCCGACGCCGTGCGGGCCTCCGCGTC
AGGGGTTCTTCTCAACTCGTTCGACGCCATCGAGGCGCCGGAGCTGGCCAGGATAGAGAAAGAGCTGTCCTGTCCAGCCT
TCGCGGTCGGCCCTCTGCACAGGATGTGCCCAGGGCCGGCGCCGGCGGAGCACGGCCTGCACGTGCCAGACCGCCGCTGC
CTGGCGTGGCTGGACGCGCACCCGCCGCGCTCCGTGCTGTACGTGAGCCTGGGGAGCGTCGCTCGCGTCGACCGCGGCGT
GTTCGAGGAAATGGCGTGGGGACTGGCGGGCAGCGGCGTGCCGTTCCTGTGGGTCGTCCGGCCCGGCTCCGTCCGCGGCG
GCGGCGCCGACGAACTACCCAACGGGCTCGACGAGGGATTCAGGAGCAGGGGGAAGGTGGTGGCATGGGCGCCACAACTG
GAGGTTCTGGCCCACGAGGCCGTCGGCGCATTCTGGACGCATTGCGGCTGGAACTCGACGCTGGAGGGCGTGTGCGCCGG
CGTGCCGATGCTCGCGCAGCCGTGCTTCGCGGACCAGACGGTGAACGCGAGGTACGTGACGCACCGGTGGGGCGTCGGGC
TGGAGGTGGGGGACGTGATCGACAGGGCCAGGGTCGCGGCGAGGGTGAGGATGGTGATGGCCGGGGAAGAAGGGGATCGG
GCGAGGGAGAGGGCGCGTCAGCTCAAGCTGCAAGCAGACCAGTGTGTGGCTGCTAGTTTCGCCCTCGACAATCTCGTGCA
GTACGTGCTGTCACTGTGAGTCGCCGGCCGGCCGGCTTCTCTACACGAGATTCTCCCCA----TGAATAATCATCTCATC
GGTGGAT-------------------------------------------------------------------------
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>chr5D_988
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------------------------------------------------------CTAGCCCGCGACGATGACGACACAAG
AA------AAGGCACCCCACGCCGTCCGCCGCCGGGTCGTCTTGTTCCCGCTGCCGTTCCAGGGCCACCTCAGCCCCATG
CTCCAGCTGGCCGAGCTCCTCCGCGCCCGCGGCCTGGCCGTCACCGTCCTCCATACCGACTTCAACGCGCCCGACCCCCC
GCACCATCCGGAGCTTGCCTTTGTCTCGATCCACGAGGCGCTCCCGCACGTGGCCACCTCCCCCGACGCCGACATCGTCG
CGCAGCTCCTGGCCCTCAACAACGGTTGCGAGGCGCCGTTCCGGGAGGCCCTGGCATCGCTGCTGCTGCTGCGTGAGGAC
GTCGCCTGCGTGGTCGTCGACGGGCAGTGGTACGCGGCGCTGGGGGCGGCGGGCGTGCTCGGCGTCCCCGTGCTCGCGCT
CCGGACGGACAGCGCCGCCACGTTCGGCAGCTTACTTGCGTTCCCTCGGCTGCGCGACGCCGGCTACGTCCCCATCAAAG
GCAAG---TGGTGCGAGCTAATTGAATTCGT----ACTCAACCGA------------CGGATGGACTGATGAGAGCTTGT
GAACTTTCTC------TGCAGAGGAGCGGCGG---GACGAGCTGGTGCCGGAGCTCGAGCTGCTCCGCGTGCGCGACCTC
ATCCGCATCGACGGCAGCGACGTAGACGCGCTCTGCGGCTTCATCGCCCGCGTCGCTGACGCCGTGTGGGCCTCAACGTC
AGGGGTCGTTCTCAACTCGTTCGACGCCATCGAGACGCCGGAGCTGGCCAGGATAGAGAAAGAGTTGTCCTGTCCGGCGT
TCGCGGTCGGCCCTCTGCACAGGATGTGCCCCGGGCCGGCGCCGGCGGAGCACGGCCTGCACGCGCCGGACCGCGG----
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>chr2D_2705
TGCAGC--------------------------------------------------------------------------
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--------------------------------CACTTTATTAATTATTCACAAAGACCTTACAAAGTAGTACATGAGTAA
GTCTGAAGTCA-CATCTTGGCAACATCTGTCGTTAC-TTCTATCCACTTGATGAAGGGGTGCCGATAGTCCGAGCCTAAT
ACCAAACATACCTCGCACCTAAGCCTAACATCTATAACCGGAGGCCCCAACCAAGCCATATACCTGGTCTGGGGCACACA
CCAGTCCGGCACACTCTCAGAGGCCACCGCCGCCGTCTTCCACCGATCCATCTTCAGAGCAGATACCGACGCCACGACCT
TGCCAGGTCTGCCATCGACGCCTCCACGACGCCAGACAGCGCCATCCTCCTGCGCGAGTCCGTCTACACACGCC------
--------------------------------------------------------------------------------
---AA---------------------------------------------------------------------------
--------------ACGCCGAGACTGCACTGCGCCACGCTGCCGAGATCCATAGTCGTCGATGCGTAAGATGAAACACCG
CTCCACCAAAGATGTTGTCCGCTGGTCCCTCGAGCCCATGCACACCTCCAAGACTGACG-CCCCAAGGGGGAAACGACGC
AAGAGCGCCGCCGTAATCCGATCTACCGATCTAGGGTTTTCCCCGGAGGTAACAGATAGAGGTCTAGAACTTCTCCACGG
CGATGTCTTCAAGAAGAGAACGACACAGAAGAGCGCCGCCATCGCCGGCTTTGTCATCTAGCCGAGCGCAA--
>chr2D_2705
TGCAGC--------------------------------------------------------------------------
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--------------------------------CACTTTATTAATTATTCACAAAGACCTTACAAAGTAGTACATGAGTAA
GTCTGAAGTCA-CATCTTGGCAACATCTGTCGTTAC-TTCTATCCACTTGATGAAGGGGTGCCGATAGTCCGAGCCTAAT
ACCAAACATACCTCGCACCTAAGCCTAACATCTAAAACCGGAGGCCCCAACCAAGCCATATACCTGGTCTGGGGCACACA
CCAATCCGGCACACTCTCAGAGGCCACCGCCGCCGTCTTCCACCGATCCATCTTCAGAGCAGATACTGACGCCACGACCT
TGCCAGGTCTGGCATCGACGCCACCACGATGCCAGACAGCGCCATCCTCCTGCGTGAGTCCGTCTACACATGCC------
--------------------------------------------------------------------------------
---AA---------------------------------------------------------------------------
--------------ACGCCGAGACTGCACTACGCCACGCTGCCGAGATCCACAGTCGTCGATGCGTAAGATGAAACACCG
CTCCACCAAAGATGTTGTCCGCTGGTCCCTCGAGCCCATGCACACCTCCAAGACTGGCG-CCCCAAGGGGGAAACGACGC
AAGAGCGCCGCCATCATCCGATCTACCGATCTGGGGTTTTCCCCGGAGGTAACAGATAGAGGTCTAGAACTTCTCCACGG
TGATGTCTTCAAGAAGAGAACGACACAGAAGAGCGCCGCCATTGCCGGCTTTGTCATCTAGCCGAGCGCAA--
>chr3D_2705
TGCAGC--------------------------------------------------------------------------
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--------------------------------CACTTTATTAATTATTCACAAAGACCTTACAAAATAGTACATCGGTAA
GGCTGAAGCCACCATCTTGGTAACATCTGTCGCTAC-TTCTATCCACTTGATGAAGGTGTGCCGATAGTCTGAGCCTAAT
ACCAAACAGGCCTCGCATCTAAGCCTAATATCTAAAACCGGAGGCCCCAGCCAAGCCATATACCTGATCTGGGGCACACA
CCGGTCCGGCGCACTCTCAGAGTCTGCCGCCGCCGTCTTCCTCCGATCCATCTTCAAAGCAGGTACCGACGCCACGACCT
TGCTATGTCTGCCATCGGCGCCACCACGACGCCAGACAGCGCCATCCTCCCGCGCGAGTCCGTCTACACACATC------
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---GA---------------------------------------------------------------------------
--------------ACGCCGGGACTCCACTACACCACGCCGCCGAGATCCACAGTCGTCGATGCGTAAGATGAAACACCG
CTCCACCAAAGATGTTGTCCGCTGGTCCCTCGAGCCCATGCACACCTCCAAGACTGACGCCCCCAAGGGGGAAACGATGC
AAGAGCACCGCCGTCATCCGATCTACCGATCTAGGGTTTTCCCCGGAGGTAACAGATAGAAGTCTAGAACTTCTCCATGG
CGATGTCTTAAAGAAGAGAACGACACAAAAGAGCGCAGCCATCGCCGGCCTTGGCATCTAGCCGAGCGCAAGG
>chr5A_2778
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------------------AACAACATCTGTCGCTAT-TTCTATCCACTTGATGAAGGAGTGTCGATAGTCCGAGCCTAAT
ACCAAACAGACCTCGCACCTAAGCCTAACATCCAAAAGAGGAGGCCTTAGCCAAGCCATATACCTGGTCTGAGGCACACA
CCAGTCCGGCGCACTCACAGAGGCCGCCGCCGTCATCTTCCACTGATCCATCTTCAGAGCAGGTACTGACACCACGACCA
TGCCAGGTCTGCCATGGACGCCACCACGACGCCAGACTGCGCCATCCTCCCGCGCGAGTCCGTCTACACACATC------
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---GATCCTTACCGACAGAAAAAGATTGTAGTCAGGCTGATAATGGTCGAGTGACATTACTTCGTCGGTCCGAACTAAGG
AATCTGTTAGAAAAACGCCGAGACTCCACTGCGCCACGCCACCGAGATCCATAGTCGTCGATGCGTAAAATGAAACACCG
CTCCACCAAAGATGCTATCCGCTGGTCCCTCGAGCCCGTGCACACCTCCAAGACTGACG-CCCCAAGGGGGAAACGACGC
AAGAGCGCCGCCGTCATCTGATCTACCGATCTAGGG-TTTCCCTGGAGGTAACAGATAGAGGTCTAGAACTTCTCCATGA
CGACGTCTTCAAGAAGAGAACGACACAGAAGAGCGCCGCCATCATCGGCCTTGGCATCTAGCCGAGCGCAAGG
>SNPs
SS------------------------------------------------------------------------------
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----------------------------------------------S---------------------------------
------------------------------S------------------S----S-----------S---------S---
----S-------------S-----------------------------------S---------------------S--S
-----------------------------SS-SS-S----SSSS-----------S-------------------S----
-------------S-S-S-S------------------------------------------------------------
----------------------------------------------------------S------S---S----------
-------------S------------S-----------------------------------------------------
--------S--------------------------------------------SS---S------------------S-S
S------S-------------S-----S-----S------SSSS-------S--S-----S--------S--S-S--SSS
--SS-----------S---S------------------S----S--S--SSSSSS---S-----------------S---
--SS-------S-------------------S---SS------------S--S--------------S------------
-------S-----------S---------------SSSSS-----------SS---------------S-S---------
-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
-----------SSS----------------------------S--SSSSSSSSSS-----------------S-------
--S------SSSS------S-S----------SS-S--------------------------------------------
---S----S-----------------S-----------------------------------------------------
------------------------------------S----------------------------------S-----SS-
S--S--S--S---------------S----------------S--SSS-SSS----------------------------
-------------------------------------S----------------------------SS------------
--S-------SS---------------------------------------S----------------------------
---S--------------------------------------------------------------------S-------
------SS---------S-S--------SSSSSSS----------------------------S----------------
-------S-S-----S---------------------------S------------------------------------
---------------------------------------------S------------------S---------------
---------S--------------------------------------------------S-------------------
-------------S--------------------------S---------------------------------------
------------------------S-------------------------------------------------------
---------S-----------S--------------------------------------------------S-------
---------------S--------------------S-SS---------------------------------S--S---
-----S-----------------------S-----------S--------------S---------S-------------
--------------------------------------------------------------------------------
----------S----------------S---------S-S-------------------SS-------------------
----------S--S----S-S--------------------------S-----------S---S---------------S
---------------S--------------------------------SSS--S--SSSSSSS--------S--------
----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S---S--S---S------S----S------
------------------------------------S----------------------------------S--------
----------------------S---------------------------S-----------------------------
-----S----------------S------S--------------------------------------------------
----------------S---------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-S-----------------------------------------------------------------
--------------------------------------------S-----------------------------------
-S-------------------------------S-S------------------------------S------
>forward_1827
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CCGTTGCGGGGTTGAAAAAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_3367
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CGTGGTGCGAGTTCATTGAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>forward_2772
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CCTCCGCTTGGTAAGGGAAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_4519
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ATGCATCAAAGCAGGCTTGC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
