Multiple sequence alignment - TraesCS4D01G356300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G356300 chr4D 100.000 4777 0 0 1 4777 505334448 505329672 0.000000e+00 8822.0
1 TraesCS4D01G356300 chr4D 73.362 473 87 21 1540 1978 4105500 4105967 6.450000e-29 139.0
2 TraesCS4D01G356300 chr4D 100.000 29 0 0 1871 1899 12093709 12093737 2.000000e-03 54.7
3 TraesCS4D01G356300 chr5A 92.459 1220 70 14 1997 3207 689610984 689609778 0.000000e+00 1724.0
4 TraesCS4D01G356300 chr5A 88.282 1374 80 29 655 1993 689612350 689611023 0.000000e+00 1570.0
5 TraesCS4D01G356300 chr5A 91.625 1003 65 7 3207 4193 689609742 689608743 0.000000e+00 1369.0
6 TraesCS4D01G356300 chr5A 89.674 368 23 10 4237 4599 689608736 689608379 5.640000e-124 455.0
7 TraesCS4D01G356300 chr5A 89.908 109 8 2 4672 4777 689608381 689608273 2.320000e-28 137.0
8 TraesCS4D01G356300 chr5A 90.123 81 5 3 584 663 689612656 689612578 8.460000e-18 102.0
9 TraesCS4D01G356300 chr5A 100.000 29 0 0 1871 1899 158182184 158182212 2.000000e-03 54.7
10 TraesCS4D01G356300 chr4B 91.413 1246 75 13 2743 3967 651992381 651991147 0.000000e+00 1679.0
11 TraesCS4D01G356300 chr4B 92.903 930 47 11 1077 1997 651994086 651993167 0.000000e+00 1334.0
12 TraesCS4D01G356300 chr4B 94.737 456 24 0 2001 2456 651993132 651992677 0.000000e+00 710.0
13 TraesCS4D01G356300 chr4B 89.409 491 32 8 1 488 651995419 651994946 6.840000e-168 601.0
14 TraesCS4D01G356300 chr4B 90.000 420 26 5 4365 4777 651991146 651990736 3.270000e-146 529.0
15 TraesCS4D01G356300 chr4B 90.585 393 26 8 619 1007 651994864 651994479 1.190000e-140 510.0
16 TraesCS4D01G356300 chr4B 90.377 239 19 3 2483 2717 651992677 651992439 1.290000e-80 311.0
17 TraesCS4D01G356300 chr4B 85.638 188 20 7 3954 4138 269175686 269175869 1.750000e-44 191.0
18 TraesCS4D01G356300 chr5B 80.818 1663 262 39 1864 3514 419244304 419242687 0.000000e+00 1251.0
19 TraesCS4D01G356300 chr5B 86.400 250 34 0 1537 1786 419245187 419244938 1.690000e-69 274.0
20 TraesCS4D01G356300 chr5B 85.315 143 19 2 1057 1198 419245727 419245586 3.850000e-31 147.0
21 TraesCS4D01G356300 chr5D 87.831 189 18 5 3954 4138 114976487 114976674 2.900000e-52 217.0
22 TraesCS4D01G356300 chr5D 85.641 195 21 6 3954 4142 462463148 462462955 1.050000e-46 198.0
23 TraesCS4D01G356300 chr3D 86.598 194 22 4 3954 4146 266393290 266393480 1.350000e-50 211.0
24 TraesCS4D01G356300 chr3A 85.938 192 22 5 3961 4147 55709538 55709347 2.920000e-47 200.0
25 TraesCS4D01G356300 chr3A 85.567 194 23 5 3954 4145 301118204 301118394 1.050000e-46 198.0
26 TraesCS4D01G356300 chr4A 86.631 187 16 7 3954 4138 273738485 273738664 1.050000e-46 198.0
27 TraesCS4D01G356300 chr4A 88.136 59 5 2 860 918 542064815 542064759 8.580000e-08 69.4
28 TraesCS4D01G356300 chr1D 84.000 200 22 9 3954 4145 89234502 89234699 2.940000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G356300 chr4D 505329672 505334448 4776 True 8822.000000 8822 100.000000 1 4777 1 chr4D.!!$R1 4776
1 TraesCS4D01G356300 chr5A 689608273 689612656 4383 True 892.833333 1724 90.345167 584 4777 6 chr5A.!!$R1 4193
2 TraesCS4D01G356300 chr4B 651990736 651995419 4683 True 810.571429 1679 91.346286 1 4777 7 chr4B.!!$R1 4776
3 TraesCS4D01G356300 chr5B 419242687 419245727 3040 True 557.333333 1251 84.177667 1057 3514 3 chr5B.!!$R1 2457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.523072 GTCGGTCAGGTACGTAGCAA 59.477 55.0 25.28 11.18 0.00 3.91 F
1007 1252 0.325272 GACCCTCTTTCCACTCACCC 59.675 60.0 0.00 0.00 0.00 4.61 F
2728 4044 0.176680 CAGTCCAGTCCAGGAATCCG 59.823 60.0 0.00 0.00 39.92 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 3070 0.166597 CATACCTGCACGCACACAAG 59.833 55.0 0.0 0.0 0.00 3.16 R
2747 4100 1.144969 TTGCTTTCACCATCGTCGTC 58.855 50.0 0.0 0.0 0.00 4.20 R
4251 5663 0.106894 AACTCGCTATTGGGCTAGGC 59.893 55.0 8.0 8.0 30.65 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.488812 TGGAATTAGTAGGCGCCACAT 59.511 47.619 31.54 16.03 0.00 3.21
32 33 4.202419 TGGAATTAGTAGGCGCCACATATT 60.202 41.667 31.54 23.09 0.00 1.28
37 38 0.534877 TAGGCGCCACATATTGCAGG 60.535 55.000 31.54 0.00 0.00 4.85
105 106 0.523072 GTCGGTCAGGTACGTAGCAA 59.477 55.000 25.28 11.18 0.00 3.91
106 107 1.068333 GTCGGTCAGGTACGTAGCAAA 60.068 52.381 25.28 10.83 0.00 3.68
107 108 1.820519 TCGGTCAGGTACGTAGCAAAT 59.179 47.619 25.28 3.35 0.00 2.32
108 109 3.016031 TCGGTCAGGTACGTAGCAAATA 58.984 45.455 25.28 5.99 0.00 1.40
179 180 1.615392 GCACACAAGGAATTGAAGGCT 59.385 47.619 0.00 0.00 0.00 4.58
188 189 7.490402 CACAAGGAATTGAAGGCTTGATAAATC 59.510 37.037 3.46 0.00 0.00 2.17
196 197 4.778213 AGGCTTGATAAATCCTGTGCTA 57.222 40.909 0.00 0.00 0.00 3.49
208 209 1.139058 CCTGTGCTAGTACCACCCATC 59.861 57.143 8.60 0.00 32.30 3.51
231 232 4.698276 CGACTGTCGGTTTTTAAGACATG 58.302 43.478 21.78 0.00 42.97 3.21
252 256 9.775854 GACATGGTAGAGTAGAGTACTAACATA 57.224 37.037 0.00 0.00 40.91 2.29
293 297 1.064017 TCCAAGTTCTTTGCCACAGGT 60.064 47.619 0.00 0.00 35.37 4.00
294 298 1.756538 CCAAGTTCTTTGCCACAGGTT 59.243 47.619 0.00 0.00 35.37 3.50
295 299 2.168313 CCAAGTTCTTTGCCACAGGTTT 59.832 45.455 0.00 0.00 35.37 3.27
296 300 3.189285 CAAGTTCTTTGCCACAGGTTTG 58.811 45.455 0.00 0.00 0.00 2.93
297 301 2.456577 AGTTCTTTGCCACAGGTTTGT 58.543 42.857 0.00 0.00 38.31 2.83
298 302 2.427095 AGTTCTTTGCCACAGGTTTGTC 59.573 45.455 0.00 0.00 34.62 3.18
299 303 1.021202 TCTTTGCCACAGGTTTGTCG 58.979 50.000 0.00 0.00 34.62 4.35
300 304 0.738389 CTTTGCCACAGGTTTGTCGT 59.262 50.000 0.00 0.00 34.62 4.34
301 305 1.944024 CTTTGCCACAGGTTTGTCGTA 59.056 47.619 0.00 0.00 34.62 3.43
302 306 2.264005 TTGCCACAGGTTTGTCGTAT 57.736 45.000 0.00 0.00 34.62 3.06
303 307 2.264005 TGCCACAGGTTTGTCGTATT 57.736 45.000 0.00 0.00 34.62 1.89
304 308 1.876799 TGCCACAGGTTTGTCGTATTG 59.123 47.619 0.00 0.00 34.62 1.90
305 309 2.147958 GCCACAGGTTTGTCGTATTGA 58.852 47.619 0.00 0.00 34.62 2.57
306 310 2.159627 GCCACAGGTTTGTCGTATTGAG 59.840 50.000 0.00 0.00 34.62 3.02
307 311 2.159627 CCACAGGTTTGTCGTATTGAGC 59.840 50.000 0.00 0.00 34.62 4.26
308 312 2.159627 CACAGGTTTGTCGTATTGAGCC 59.840 50.000 0.00 0.00 34.62 4.70
329 333 8.849168 TGAGCCAAAATATACCACTGAATTATG 58.151 33.333 0.00 0.00 0.00 1.90
353 357 9.845740 ATGTGCTAATAGTGTAATTATTGGTCA 57.154 29.630 0.00 0.00 31.22 4.02
412 416 3.819564 TTGAAGGGATGGAGTACGATG 57.180 47.619 0.00 0.00 0.00 3.84
413 417 3.026707 TGAAGGGATGGAGTACGATGA 57.973 47.619 0.00 0.00 0.00 2.92
414 418 3.576861 TGAAGGGATGGAGTACGATGAT 58.423 45.455 0.00 0.00 0.00 2.45
425 429 9.386010 GATGGAGTACGATGATACTACTCTATT 57.614 37.037 7.19 0.00 38.26 1.73
426 430 8.549338 TGGAGTACGATGATACTACTCTATTG 57.451 38.462 6.96 0.00 36.99 1.90
435 439 7.725818 TGATACTACTCTATTGTACTCCACG 57.274 40.000 0.00 0.00 0.00 4.94
436 440 6.709397 TGATACTACTCTATTGTACTCCACGG 59.291 42.308 0.00 0.00 0.00 4.94
457 461 4.262079 CGGATCAATTGTAGGAGTACCCTC 60.262 50.000 5.13 1.20 43.31 4.30
458 462 4.902448 GGATCAATTGTAGGAGTACCCTCT 59.098 45.833 5.13 0.00 43.31 3.69
493 497 9.778741 ATGGTATAACTTTGATGACATACGATT 57.221 29.630 0.00 0.00 0.00 3.34
494 498 9.607988 TGGTATAACTTTGATGACATACGATTT 57.392 29.630 0.00 0.00 0.00 2.17
495 499 9.864034 GGTATAACTTTGATGACATACGATTTG 57.136 33.333 0.00 0.00 0.00 2.32
502 506 9.567917 CTTTGATGACATACGATTTGTATTACG 57.432 33.333 0.00 0.00 41.93 3.18
503 507 8.637281 TTGATGACATACGATTTGTATTACGT 57.363 30.769 0.00 0.00 41.93 3.57
504 508 8.637281 TGATGACATACGATTTGTATTACGTT 57.363 30.769 0.00 0.00 41.93 3.99
505 509 8.536407 TGATGACATACGATTTGTATTACGTTG 58.464 33.333 0.00 0.00 41.93 4.10
508 512 7.331440 TGACATACGATTTGTATTACGTTGGTT 59.669 33.333 0.00 0.00 41.93 3.67
509 513 7.457868 ACATACGATTTGTATTACGTTGGTTG 58.542 34.615 0.00 0.00 41.93 3.77
511 515 6.542574 ACGATTTGTATTACGTTGGTTGAA 57.457 33.333 0.00 0.00 35.47 2.69
512 516 7.136289 ACGATTTGTATTACGTTGGTTGAAT 57.864 32.000 0.00 0.00 35.47 2.57
514 518 7.535940 ACGATTTGTATTACGTTGGTTGAATTG 59.464 33.333 0.00 0.00 35.47 2.32
516 520 9.828852 GATTTGTATTACGTTGGTTGAATTGTA 57.171 29.630 0.00 0.00 0.00 2.41
517 521 9.615295 ATTTGTATTACGTTGGTTGAATTGTAC 57.385 29.630 0.00 0.00 0.00 2.90
518 522 7.725818 TGTATTACGTTGGTTGAATTGTACA 57.274 32.000 0.00 0.00 0.00 2.90
519 523 8.325421 TGTATTACGTTGGTTGAATTGTACAT 57.675 30.769 0.00 0.00 0.00 2.29
520 524 8.231161 TGTATTACGTTGGTTGAATTGTACATG 58.769 33.333 0.00 0.00 0.00 3.21
521 525 4.497473 ACGTTGGTTGAATTGTACATGG 57.503 40.909 0.00 0.00 0.00 3.66
522 526 3.254657 ACGTTGGTTGAATTGTACATGGG 59.745 43.478 0.00 0.00 0.00 4.00
523 527 3.584834 GTTGGTTGAATTGTACATGGGC 58.415 45.455 0.00 0.00 0.00 5.36
524 528 2.175202 TGGTTGAATTGTACATGGGCC 58.825 47.619 0.00 0.00 0.00 5.80
527 531 3.119137 GGTTGAATTGTACATGGGCCTTC 60.119 47.826 4.53 0.00 0.00 3.46
528 532 3.737559 TGAATTGTACATGGGCCTTCT 57.262 42.857 4.53 0.00 0.00 2.85
529 533 4.853468 TGAATTGTACATGGGCCTTCTA 57.147 40.909 4.53 0.00 0.00 2.10
530 534 5.387113 TGAATTGTACATGGGCCTTCTAT 57.613 39.130 4.53 0.00 0.00 1.98
531 535 6.508030 TGAATTGTACATGGGCCTTCTATA 57.492 37.500 4.53 0.00 0.00 1.31
534 538 7.502226 TGAATTGTACATGGGCCTTCTATAAAG 59.498 37.037 4.53 0.00 0.00 1.85
535 539 4.714632 TGTACATGGGCCTTCTATAAAGC 58.285 43.478 4.53 0.00 0.00 3.51
536 540 2.851195 ACATGGGCCTTCTATAAAGCG 58.149 47.619 4.53 0.00 0.00 4.68
538 542 3.118038 ACATGGGCCTTCTATAAAGCGAA 60.118 43.478 4.53 0.00 0.00 4.70
541 545 4.337145 TGGGCCTTCTATAAAGCGAAAAA 58.663 39.130 4.53 0.00 0.00 1.94
545 549 6.349860 GGGCCTTCTATAAAGCGAAAAAGAAA 60.350 38.462 0.84 0.00 0.00 2.52
546 550 6.747739 GGCCTTCTATAAAGCGAAAAAGAAAG 59.252 38.462 0.00 0.00 0.00 2.62
547 551 6.747739 GCCTTCTATAAAGCGAAAAAGAAAGG 59.252 38.462 0.00 0.00 0.00 3.11
548 552 7.361799 GCCTTCTATAAAGCGAAAAAGAAAGGA 60.362 37.037 0.00 0.00 0.00 3.36
555 559 6.877611 AAGCGAAAAAGAAAGGAATACTGA 57.122 33.333 0.00 0.00 0.00 3.41
556 560 6.487689 AGCGAAAAAGAAAGGAATACTGAG 57.512 37.500 0.00 0.00 0.00 3.35
557 561 5.089411 GCGAAAAAGAAAGGAATACTGAGC 58.911 41.667 0.00 0.00 0.00 4.26
558 562 5.106515 GCGAAAAAGAAAGGAATACTGAGCT 60.107 40.000 0.00 0.00 0.00 4.09
559 563 6.568653 GCGAAAAAGAAAGGAATACTGAGCTT 60.569 38.462 0.00 0.00 0.00 3.74
560 564 7.018235 CGAAAAAGAAAGGAATACTGAGCTTC 58.982 38.462 0.00 0.00 0.00 3.86
561 565 7.095017 CGAAAAAGAAAGGAATACTGAGCTTCT 60.095 37.037 0.00 0.00 0.00 2.85
562 566 7.680442 AAAAGAAAGGAATACTGAGCTTCTC 57.320 36.000 0.00 0.00 0.00 2.87
563 567 6.619329 AAGAAAGGAATACTGAGCTTCTCT 57.381 37.500 0.00 0.00 0.00 3.10
566 570 6.895204 AGAAAGGAATACTGAGCTTCTCTAGT 59.105 38.462 0.00 0.00 0.00 2.57
568 572 7.489239 AAGGAATACTGAGCTTCTCTAGTTT 57.511 36.000 0.00 0.00 0.00 2.66
569 573 7.489239 AGGAATACTGAGCTTCTCTAGTTTT 57.511 36.000 0.00 0.00 0.00 2.43
570 574 7.552459 AGGAATACTGAGCTTCTCTAGTTTTC 58.448 38.462 0.00 13.81 34.05 2.29
571 575 7.398904 AGGAATACTGAGCTTCTCTAGTTTTCT 59.601 37.037 17.36 9.67 34.51 2.52
572 576 8.688151 GGAATACTGAGCTTCTCTAGTTTTCTA 58.312 37.037 17.36 0.00 34.51 2.10
577 581 9.863845 ACTGAGCTTCTCTAGTTTTCTATAAAC 57.136 33.333 0.00 0.00 0.00 2.01
578 582 9.308318 CTGAGCTTCTCTAGTTTTCTATAAACC 57.692 37.037 0.00 0.00 0.00 3.27
579 583 8.812972 TGAGCTTCTCTAGTTTTCTATAAACCA 58.187 33.333 0.00 0.00 0.00 3.67
580 584 9.308318 GAGCTTCTCTAGTTTTCTATAAACCAG 57.692 37.037 0.00 0.00 0.00 4.00
581 585 9.036980 AGCTTCTCTAGTTTTCTATAAACCAGA 57.963 33.333 0.00 0.00 0.00 3.86
582 586 9.308318 GCTTCTCTAGTTTTCTATAAACCAGAG 57.692 37.037 15.19 15.19 42.97 3.35
589 593 8.983307 AGTTTTCTATAAACCAGAGTTAGACG 57.017 34.615 0.00 0.00 34.19 4.18
590 594 8.583296 AGTTTTCTATAAACCAGAGTTAGACGT 58.417 33.333 0.00 0.00 34.19 4.34
591 595 8.858186 GTTTTCTATAAACCAGAGTTAGACGTC 58.142 37.037 7.70 7.70 34.19 4.34
592 596 6.690194 TCTATAAACCAGAGTTAGACGTCC 57.310 41.667 13.01 0.00 34.19 4.79
593 597 6.421485 TCTATAAACCAGAGTTAGACGTCCT 58.579 40.000 13.01 1.59 34.19 3.85
594 598 7.568349 TCTATAAACCAGAGTTAGACGTCCTA 58.432 38.462 13.01 1.11 34.19 2.94
595 599 4.780275 AAACCAGAGTTAGACGTCCTAC 57.220 45.455 13.01 10.69 34.19 3.18
596 600 3.717452 ACCAGAGTTAGACGTCCTACT 57.283 47.619 17.23 17.23 0.00 2.57
597 601 3.345414 ACCAGAGTTAGACGTCCTACTG 58.655 50.000 20.90 17.34 0.00 2.74
639 643 9.404848 AGTGTGTAGCAATAATACTGAGTACTA 57.595 33.333 0.00 0.00 0.00 1.82
641 645 8.627403 TGTGTAGCAATAATACTGAGTACTACC 58.373 37.037 11.11 5.84 0.00 3.18
652 656 2.165998 GAGTACTACCGGTTGTCCACT 58.834 52.381 25.00 22.20 0.00 4.00
724 967 6.473758 ACCCTGTTTGAAAATCTAGAGTACC 58.526 40.000 0.00 0.00 0.00 3.34
759 1002 3.257469 TGACTGCATGTGATTCCTCTC 57.743 47.619 0.00 0.00 0.00 3.20
768 1011 4.412796 TGTGATTCCTCTCATGATCACC 57.587 45.455 17.82 5.41 38.02 4.02
769 1012 3.776417 TGTGATTCCTCTCATGATCACCA 59.224 43.478 17.82 7.34 38.02 4.17
859 1104 4.657039 TCCTACCTACAACACAAAAGACCT 59.343 41.667 0.00 0.00 0.00 3.85
880 1125 2.507339 TTTTTCAGCAAAAGAGGGCG 57.493 45.000 0.00 0.00 32.96 6.13
882 1127 1.805428 TTTCAGCAAAAGAGGGCGCC 61.805 55.000 21.18 21.18 34.54 6.53
883 1128 2.974692 TTCAGCAAAAGAGGGCGCCA 62.975 55.000 30.85 0.00 34.54 5.69
930 1175 2.539476 CAACTGGTTCAACTGCCAAAC 58.461 47.619 0.00 0.00 33.93 2.93
931 1176 1.846007 ACTGGTTCAACTGCCAAACA 58.154 45.000 0.00 0.00 33.93 2.83
937 1182 3.124466 GGTTCAACTGCCAAACAAACAAC 59.876 43.478 0.00 0.00 0.00 3.32
938 1183 3.667497 TCAACTGCCAAACAAACAACA 57.333 38.095 0.00 0.00 0.00 3.33
939 1184 3.995199 TCAACTGCCAAACAAACAACAA 58.005 36.364 0.00 0.00 0.00 2.83
940 1185 4.380531 TCAACTGCCAAACAAACAACAAA 58.619 34.783 0.00 0.00 0.00 2.83
941 1186 4.816385 TCAACTGCCAAACAAACAACAAAA 59.184 33.333 0.00 0.00 0.00 2.44
946 1191 5.890334 TGCCAAACAAACAACAAAAACAAA 58.110 29.167 0.00 0.00 0.00 2.83
949 1194 6.558614 GCCAAACAAACAACAAAAACAAAACG 60.559 34.615 0.00 0.00 0.00 3.60
959 1204 6.218025 ACAAAAACAAAACGAAACACCTTC 57.782 33.333 0.00 0.00 0.00 3.46
1007 1252 0.325272 GACCCTCTTTCCACTCACCC 59.675 60.000 0.00 0.00 0.00 4.61
1024 1269 3.012518 CACCCACACAAATCATCTCCTC 58.987 50.000 0.00 0.00 0.00 3.71
1025 1270 2.915604 ACCCACACAAATCATCTCCTCT 59.084 45.455 0.00 0.00 0.00 3.69
1052 1332 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1053 1333 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1234 1806 7.624134 GCACACATATTACGCATGCATATACTT 60.624 37.037 19.57 0.00 0.00 2.24
1284 1917 3.484229 GCGTCAAGTTCATATGTGCTGTC 60.484 47.826 1.90 0.00 0.00 3.51
1337 1971 4.581409 TGCGTATATGCAGTACTAGTGGAA 59.419 41.667 15.71 0.00 40.62 3.53
1468 2102 7.009179 TCATGGTTCTTCATGATCTATACCC 57.991 40.000 0.00 0.00 45.81 3.69
1469 2103 6.789457 TCATGGTTCTTCATGATCTATACCCT 59.211 38.462 0.00 0.00 45.81 4.34
1471 2105 7.451731 TGGTTCTTCATGATCTATACCCTTT 57.548 36.000 0.00 0.00 0.00 3.11
1472 2106 8.561536 TGGTTCTTCATGATCTATACCCTTTA 57.438 34.615 0.00 0.00 0.00 1.85
1473 2107 8.429641 TGGTTCTTCATGATCTATACCCTTTAC 58.570 37.037 0.00 0.00 0.00 2.01
1505 2144 8.526147 TCATGATTCTTTTGATCCCTTTTCTTC 58.474 33.333 0.00 0.00 0.00 2.87
1512 2151 8.217799 TCTTTTGATCCCTTTTCTTCAGAGTTA 58.782 33.333 0.00 0.00 0.00 2.24
1514 2153 5.491982 TGATCCCTTTTCTTCAGAGTTAGC 58.508 41.667 0.00 0.00 0.00 3.09
1559 2228 1.908483 CAGGTGGTAGGGAAGGAGC 59.092 63.158 0.00 0.00 0.00 4.70
1610 2279 3.181510 GGACGGGTTTCAATCTTTCATCG 60.182 47.826 0.00 0.00 0.00 3.84
1829 2503 1.067776 GTAGGTGCAGCAAGAGTACGT 60.068 52.381 19.63 0.00 0.00 3.57
1831 2505 1.067776 AGGTGCAGCAAGAGTACGTAC 60.068 52.381 19.63 18.10 0.00 3.67
1832 2506 0.982673 GTGCAGCAAGAGTACGTACG 59.017 55.000 19.49 15.01 0.00 3.67
1833 2507 0.731514 TGCAGCAAGAGTACGTACGC 60.732 55.000 20.22 20.22 0.00 4.42
1834 2508 0.731514 GCAGCAAGAGTACGTACGCA 60.732 55.000 27.56 0.00 0.00 5.24
1847 3061 1.402325 CGTACGCAGTGAATGGTCTCA 60.402 52.381 0.52 0.00 45.73 3.27
1961 3193 0.908198 ATCTCAAGGTGCTCCTCCAC 59.092 55.000 7.99 0.00 44.35 4.02
1964 3196 1.071471 CAAGGTGCTCCTCCACGTT 59.929 57.895 7.99 0.00 44.35 3.99
2456 3760 4.102524 TCGAAGGCACCAGGTTCATTATAT 59.897 41.667 0.00 0.00 0.00 0.86
2457 3761 4.214119 CGAAGGCACCAGGTTCATTATATG 59.786 45.833 0.00 0.00 0.00 1.78
2458 3762 4.796110 AGGCACCAGGTTCATTATATGT 57.204 40.909 0.00 0.00 0.00 2.29
2459 3763 5.129368 AGGCACCAGGTTCATTATATGTT 57.871 39.130 0.00 0.00 0.00 2.71
2460 3764 5.518865 AGGCACCAGGTTCATTATATGTTT 58.481 37.500 0.00 0.00 0.00 2.83
2461 3765 5.594317 AGGCACCAGGTTCATTATATGTTTC 59.406 40.000 0.00 0.00 0.00 2.78
2462 3766 5.594317 GGCACCAGGTTCATTATATGTTTCT 59.406 40.000 0.00 0.00 0.00 2.52
2463 3767 6.096846 GGCACCAGGTTCATTATATGTTTCTT 59.903 38.462 0.00 0.00 0.00 2.52
2464 3768 6.974622 GCACCAGGTTCATTATATGTTTCTTG 59.025 38.462 0.00 0.00 0.00 3.02
2465 3769 7.362920 GCACCAGGTTCATTATATGTTTCTTGT 60.363 37.037 0.00 0.00 0.00 3.16
2466 3770 8.184192 CACCAGGTTCATTATATGTTTCTTGTC 58.816 37.037 0.00 0.00 0.00 3.18
2467 3771 7.339466 ACCAGGTTCATTATATGTTTCTTGTCC 59.661 37.037 0.00 0.00 0.00 4.02
2468 3772 7.557719 CCAGGTTCATTATATGTTTCTTGTCCT 59.442 37.037 0.00 0.00 0.00 3.85
2469 3773 8.960591 CAGGTTCATTATATGTTTCTTGTCCTT 58.039 33.333 0.00 0.00 0.00 3.36
2470 3774 9.533831 AGGTTCATTATATGTTTCTTGTCCTTT 57.466 29.630 0.00 0.00 0.00 3.11
2471 3775 9.788960 GGTTCATTATATGTTTCTTGTCCTTTC 57.211 33.333 0.00 0.00 0.00 2.62
2476 3780 6.749923 ATATGTTTCTTGTCCTTTCTCTGC 57.250 37.500 0.00 0.00 0.00 4.26
2477 3781 3.214328 TGTTTCTTGTCCTTTCTCTGCC 58.786 45.455 0.00 0.00 0.00 4.85
2478 3782 3.117888 TGTTTCTTGTCCTTTCTCTGCCT 60.118 43.478 0.00 0.00 0.00 4.75
2479 3783 3.409026 TTCTTGTCCTTTCTCTGCCTC 57.591 47.619 0.00 0.00 0.00 4.70
2480 3784 1.625818 TCTTGTCCTTTCTCTGCCTCC 59.374 52.381 0.00 0.00 0.00 4.30
2481 3785 1.349026 CTTGTCCTTTCTCTGCCTCCA 59.651 52.381 0.00 0.00 0.00 3.86
2482 3786 1.434188 TGTCCTTTCTCTGCCTCCAA 58.566 50.000 0.00 0.00 0.00 3.53
2488 3792 5.124617 GTCCTTTCTCTGCCTCCAAATTTAG 59.875 44.000 0.00 0.00 0.00 1.85
2500 3804 5.447818 CCTCCAAATTTAGAGTGCAATCGTC 60.448 44.000 8.74 0.00 0.00 4.20
2504 3808 6.961554 CCAAATTTAGAGTGCAATCGTCTTAC 59.038 38.462 8.74 0.00 0.00 2.34
2519 3823 3.667960 CGTCTTACTCTGTTGCAAATGCC 60.668 47.826 0.00 0.00 41.18 4.40
2524 3828 3.460103 ACTCTGTTGCAAATGCCAAAAG 58.540 40.909 0.00 2.81 41.18 2.27
2528 3834 3.871485 TGTTGCAAATGCCAAAAGAAGT 58.129 36.364 0.00 0.00 41.18 3.01
2529 3835 5.016051 TGTTGCAAATGCCAAAAGAAGTA 57.984 34.783 0.00 0.00 41.18 2.24
2531 3837 5.877012 TGTTGCAAATGCCAAAAGAAGTAAA 59.123 32.000 0.00 0.00 41.18 2.01
2533 3839 7.066766 TGTTGCAAATGCCAAAAGAAGTAAAAT 59.933 29.630 0.00 0.00 41.18 1.82
2719 4035 1.594331 GTTGGTTGTCAGTCCAGTCC 58.406 55.000 0.38 0.00 35.05 3.85
2728 4044 0.176680 CAGTCCAGTCCAGGAATCCG 59.823 60.000 0.00 0.00 39.92 4.18
2741 4094 4.341235 CCAGGAATCCGTACAGTAAGATGA 59.659 45.833 0.00 0.00 0.00 2.92
2747 4100 7.306632 GGAATCCGTACAGTAAGATGAATTTCG 60.307 40.741 0.00 0.00 0.00 3.46
2792 4145 3.730215 TGGTTGGGTATATGTTGCTGT 57.270 42.857 0.00 0.00 0.00 4.40
2823 4176 0.447801 GACATGGTGGTGAATGCGAC 59.552 55.000 0.00 0.00 0.00 5.19
2873 4226 3.679389 TCCTCATTGGAGAAGACAAAGC 58.321 45.455 0.00 0.00 44.26 3.51
2876 4229 4.015084 CTCATTGGAGAAGACAAAGCCAT 58.985 43.478 0.00 0.00 44.26 4.40
3046 4399 2.502142 TGACATTCCTCAGCAGCATT 57.498 45.000 0.00 0.00 0.00 3.56
3222 4611 3.535561 CGGTTGTATCTTCTTGATGGCT 58.464 45.455 0.00 0.00 36.65 4.75
3224 4613 3.879892 GGTTGTATCTTCTTGATGGCTCC 59.120 47.826 0.00 0.00 36.65 4.70
3225 4614 3.845781 TGTATCTTCTTGATGGCTCCC 57.154 47.619 0.00 0.00 36.65 4.30
3226 4615 3.114606 TGTATCTTCTTGATGGCTCCCA 58.885 45.455 0.00 0.00 38.19 4.37
3227 4616 2.725221 ATCTTCTTGATGGCTCCCAC 57.275 50.000 0.00 0.00 35.80 4.61
3228 4617 1.361204 TCTTCTTGATGGCTCCCACA 58.639 50.000 0.00 0.00 35.80 4.17
3229 4618 1.918262 TCTTCTTGATGGCTCCCACAT 59.082 47.619 0.00 0.00 35.80 3.21
3230 4619 3.114606 TCTTCTTGATGGCTCCCACATA 58.885 45.455 0.00 0.00 35.80 2.29
3231 4620 3.523157 TCTTCTTGATGGCTCCCACATAA 59.477 43.478 0.00 0.00 35.80 1.90
3232 4621 4.166725 TCTTCTTGATGGCTCCCACATAAT 59.833 41.667 0.00 0.00 35.80 1.28
3257 4646 9.825972 ATTAAGATGACACGACTTTTATTGTTG 57.174 29.630 0.00 0.00 0.00 3.33
3347 4736 4.370049 TCGATGACGTCAACCTAAACAAA 58.630 39.130 24.13 0.00 40.69 2.83
3350 4739 5.403166 CGATGACGTCAACCTAAACAAACTA 59.597 40.000 24.13 0.00 34.56 2.24
3679 5084 4.445453 TCTAGCTCATGTTGTATTGCCAG 58.555 43.478 0.00 0.00 0.00 4.85
3843 5254 5.308927 CGCTTCTCAGTTCAAAACGAATAG 58.691 41.667 0.00 0.00 35.63 1.73
3844 5255 5.082723 GCTTCTCAGTTCAAAACGAATAGC 58.917 41.667 0.00 0.00 35.63 2.97
3853 5264 3.372822 TCAAAACGAATAGCCCAATCGAC 59.627 43.478 1.03 0.00 39.73 4.20
3912 5323 7.130917 CGCATCTCCAGAATTAAAATCAAGAG 58.869 38.462 0.00 0.00 0.00 2.85
3917 5328 6.173339 TCCAGAATTAAAATCAAGAGCGACT 58.827 36.000 0.00 0.00 0.00 4.18
3937 5348 0.392998 GCGTCCATGAACCAGGTCAT 60.393 55.000 0.00 0.00 38.84 3.06
4182 5594 1.228459 AACTCCTTCCGGTTTGGGC 60.228 57.895 0.00 0.00 38.76 5.36
4205 5617 3.458653 GCTGGCAAGCCTTCCAAA 58.541 55.556 12.96 0.00 44.22 3.28
4206 5618 1.747774 GCTGGCAAGCCTTCCAAAA 59.252 52.632 12.96 0.00 44.22 2.44
4208 5620 0.033920 CTGGCAAGCCTTCCAAAACC 59.966 55.000 12.96 0.00 36.94 3.27
4209 5621 1.371183 GGCAAGCCTTCCAAAACCC 59.629 57.895 3.29 0.00 0.00 4.11
4210 5622 1.406860 GGCAAGCCTTCCAAAACCCA 61.407 55.000 3.29 0.00 0.00 4.51
4211 5623 0.686789 GCAAGCCTTCCAAAACCCAT 59.313 50.000 0.00 0.00 0.00 4.00
4212 5624 1.338105 GCAAGCCTTCCAAAACCCATC 60.338 52.381 0.00 0.00 0.00 3.51
4213 5625 1.969923 CAAGCCTTCCAAAACCCATCA 59.030 47.619 0.00 0.00 0.00 3.07
4214 5626 1.928868 AGCCTTCCAAAACCCATCAG 58.071 50.000 0.00 0.00 0.00 2.90
4215 5627 0.897621 GCCTTCCAAAACCCATCAGG 59.102 55.000 0.00 0.00 43.78 3.86
4216 5628 0.897621 CCTTCCAAAACCCATCAGGC 59.102 55.000 0.00 0.00 40.58 4.85
4217 5629 0.897621 CTTCCAAAACCCATCAGGCC 59.102 55.000 0.00 0.00 40.58 5.19
4218 5630 0.486879 TTCCAAAACCCATCAGGCCT 59.513 50.000 0.00 0.00 40.58 5.19
4219 5631 0.486879 TCCAAAACCCATCAGGCCTT 59.513 50.000 0.00 0.00 40.58 4.35
4220 5632 1.713647 TCCAAAACCCATCAGGCCTTA 59.286 47.619 0.00 0.00 40.58 2.69
4221 5633 2.102578 CCAAAACCCATCAGGCCTTAG 58.897 52.381 0.00 0.00 40.58 2.18
4222 5634 2.557452 CCAAAACCCATCAGGCCTTAGT 60.557 50.000 0.00 0.00 40.58 2.24
4223 5635 2.755103 CAAAACCCATCAGGCCTTAGTC 59.245 50.000 0.00 0.00 40.58 2.59
4224 5636 0.919710 AACCCATCAGGCCTTAGTCC 59.080 55.000 0.00 0.00 40.58 3.85
4225 5637 0.988678 ACCCATCAGGCCTTAGTCCC 60.989 60.000 0.00 0.00 40.58 4.46
4226 5638 1.447643 CCATCAGGCCTTAGTCCCG 59.552 63.158 0.00 0.00 0.00 5.14
4227 5639 1.338136 CCATCAGGCCTTAGTCCCGT 61.338 60.000 0.00 0.00 0.00 5.28
4228 5640 0.541863 CATCAGGCCTTAGTCCCGTT 59.458 55.000 0.00 0.00 0.00 4.44
4229 5641 0.831307 ATCAGGCCTTAGTCCCGTTC 59.169 55.000 0.00 0.00 0.00 3.95
4230 5642 1.221021 CAGGCCTTAGTCCCGTTCC 59.779 63.158 0.00 0.00 0.00 3.62
4231 5643 1.080538 AGGCCTTAGTCCCGTTCCT 59.919 57.895 0.00 0.00 0.00 3.36
4232 5644 0.546988 AGGCCTTAGTCCCGTTCCTT 60.547 55.000 0.00 0.00 0.00 3.36
4233 5645 1.197812 GGCCTTAGTCCCGTTCCTTA 58.802 55.000 0.00 0.00 0.00 2.69
4234 5646 1.767088 GGCCTTAGTCCCGTTCCTTAT 59.233 52.381 0.00 0.00 0.00 1.73
4235 5647 2.967887 GGCCTTAGTCCCGTTCCTTATA 59.032 50.000 0.00 0.00 0.00 0.98
4236 5648 3.389002 GGCCTTAGTCCCGTTCCTTATAA 59.611 47.826 0.00 0.00 0.00 0.98
4237 5649 4.141642 GGCCTTAGTCCCGTTCCTTATAAA 60.142 45.833 0.00 0.00 0.00 1.40
4238 5650 5.055144 GCCTTAGTCCCGTTCCTTATAAAG 58.945 45.833 0.00 0.00 0.00 1.85
4239 5651 5.055144 CCTTAGTCCCGTTCCTTATAAAGC 58.945 45.833 0.00 0.00 0.00 3.51
4240 5652 3.555527 AGTCCCGTTCCTTATAAAGCC 57.444 47.619 0.00 0.00 0.00 4.35
4241 5653 2.172082 AGTCCCGTTCCTTATAAAGCCC 59.828 50.000 0.00 0.00 0.00 5.19
4242 5654 2.092807 GTCCCGTTCCTTATAAAGCCCA 60.093 50.000 0.00 0.00 0.00 5.36
4243 5655 2.781174 TCCCGTTCCTTATAAAGCCCAT 59.219 45.455 0.00 0.00 0.00 4.00
4244 5656 3.146847 CCCGTTCCTTATAAAGCCCATC 58.853 50.000 0.00 0.00 0.00 3.51
4245 5657 3.146847 CCGTTCCTTATAAAGCCCATCC 58.853 50.000 0.00 0.00 0.00 3.51
4246 5658 2.806244 CGTTCCTTATAAAGCCCATCCG 59.194 50.000 0.00 0.00 0.00 4.18
4247 5659 3.743269 CGTTCCTTATAAAGCCCATCCGT 60.743 47.826 0.00 0.00 0.00 4.69
4248 5660 3.764237 TCCTTATAAAGCCCATCCGTC 57.236 47.619 0.00 0.00 0.00 4.79
4249 5661 3.042682 TCCTTATAAAGCCCATCCGTCA 58.957 45.455 0.00 0.00 0.00 4.35
4250 5662 3.071023 TCCTTATAAAGCCCATCCGTCAG 59.929 47.826 0.00 0.00 0.00 3.51
4251 5663 3.403038 CTTATAAAGCCCATCCGTCAGG 58.597 50.000 0.00 0.00 39.46 3.86
4292 5704 3.557207 GCACTCAGGTTTGCTGTTG 57.443 52.632 0.00 0.00 35.74 3.33
4309 5721 5.580691 TGCTGTTGATACTCCAGTTAATTCG 59.419 40.000 0.00 0.00 0.00 3.34
4322 5734 8.338072 TCCAGTTAATTCGGTAAATTTTGCTA 57.662 30.769 0.00 0.00 38.53 3.49
4461 5874 9.507280 AAATATCAATCTGTTTCAGTAAATGCG 57.493 29.630 0.00 0.00 32.61 4.73
4488 5901 9.103048 GTACTAATCAAAGTTGACACGAATTTG 57.897 33.333 0.00 0.00 40.49 2.32
4577 5990 2.693069 GCACACTCAAGCTGTACTCAT 58.307 47.619 0.00 0.00 0.00 2.90
4591 6008 7.493367 AGCTGTACTCATCATACTAGGAAAAC 58.507 38.462 0.00 0.00 0.00 2.43
4595 6012 7.758076 TGTACTCATCATACTAGGAAAACAACG 59.242 37.037 0.00 0.00 0.00 4.10
4604 6021 2.571212 AGGAAAACAACGCTGTCATCA 58.429 42.857 0.00 0.00 33.45 3.07
4605 6022 2.549754 AGGAAAACAACGCTGTCATCAG 59.450 45.455 0.00 0.00 43.87 2.90
4642 6059 3.354089 ACAGAAAACAGATTGGCAACG 57.646 42.857 0.00 0.00 42.51 4.10
4644 6061 1.613437 AGAAAACAGATTGGCAACGGG 59.387 47.619 0.00 0.00 42.51 5.28
4652 6069 3.692101 CAGATTGGCAACGGGTACATTTA 59.308 43.478 0.00 0.00 42.51 1.40
4653 6070 4.156922 CAGATTGGCAACGGGTACATTTAA 59.843 41.667 0.00 0.00 42.51 1.52
4654 6071 4.767928 AGATTGGCAACGGGTACATTTAAA 59.232 37.500 0.00 0.00 42.51 1.52
4655 6072 4.931661 TTGGCAACGGGTACATTTAAAA 57.068 36.364 0.00 0.00 42.51 1.52
4656 6073 4.931661 TGGCAACGGGTACATTTAAAAA 57.068 36.364 0.00 0.00 42.51 1.94
4717 6134 9.716507 CATTTGGAGTAACGTTTATTATTCTGG 57.283 33.333 5.91 0.00 0.00 3.86
4720 6138 9.675464 TTGGAGTAACGTTTATTATTCTGGAAT 57.325 29.630 5.91 1.40 34.93 3.01
4721 6139 9.104965 TGGAGTAACGTTTATTATTCTGGAATG 57.895 33.333 5.91 0.00 32.50 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.224281 TGGCGCCTACTAATTCCATCTG 60.224 50.000 29.70 0.00 0.00 2.90
37 38 2.622903 TACGCACGGGCAGCATAGAC 62.623 60.000 11.77 0.00 41.24 2.59
105 106 5.070313 ACATGTCCTGCTTGTTTGGTTTATT 59.930 36.000 0.00 0.00 32.37 1.40
106 107 4.588528 ACATGTCCTGCTTGTTTGGTTTAT 59.411 37.500 0.00 0.00 32.37 1.40
107 108 3.957497 ACATGTCCTGCTTGTTTGGTTTA 59.043 39.130 0.00 0.00 32.37 2.01
108 109 2.765699 ACATGTCCTGCTTGTTTGGTTT 59.234 40.909 0.00 0.00 32.37 3.27
160 161 3.318839 TCAAGCCTTCAATTCCTTGTGTG 59.681 43.478 0.00 0.00 36.82 3.82
179 180 6.346096 GTGGTACTAGCACAGGATTTATCAA 58.654 40.000 12.58 0.00 45.26 2.57
196 197 0.252103 ACAGTCGGATGGGTGGTACT 60.252 55.000 0.00 0.00 0.00 2.73
225 226 7.859540 TGTTAGTACTCTACTCTACCATGTCT 58.140 38.462 0.00 0.00 40.14 3.41
231 232 8.879342 TCGTTATGTTAGTACTCTACTCTACC 57.121 38.462 0.00 0.00 40.14 3.18
252 256 6.406370 TGGACACAATATCTTGAAGATCGTT 58.594 36.000 11.53 5.52 36.20 3.85
254 258 6.536582 ACTTGGACACAATATCTTGAAGATCG 59.463 38.462 11.53 4.46 35.73 3.69
259 263 8.352201 CAAAGAACTTGGACACAATATCTTGAA 58.648 33.333 0.00 0.00 39.40 2.69
264 268 5.048083 TGGCAAAGAACTTGGACACAATATC 60.048 40.000 0.00 0.00 35.73 1.63
267 271 3.030291 TGGCAAAGAACTTGGACACAAT 58.970 40.909 0.00 0.00 35.73 2.71
293 297 7.337184 TGGTATATTTTGGCTCAATACGACAAA 59.663 33.333 0.00 0.00 0.00 2.83
294 298 6.824196 TGGTATATTTTGGCTCAATACGACAA 59.176 34.615 0.00 0.00 0.00 3.18
295 299 6.259167 GTGGTATATTTTGGCTCAATACGACA 59.741 38.462 0.00 0.00 34.12 4.35
296 300 6.482308 AGTGGTATATTTTGGCTCAATACGAC 59.518 38.462 0.00 0.00 34.13 4.34
297 301 6.481976 CAGTGGTATATTTTGGCTCAATACGA 59.518 38.462 0.00 0.00 0.00 3.43
298 302 6.481976 TCAGTGGTATATTTTGGCTCAATACG 59.518 38.462 0.00 0.00 0.00 3.06
299 303 7.801716 TCAGTGGTATATTTTGGCTCAATAC 57.198 36.000 0.00 0.00 0.00 1.89
300 304 8.995027 ATTCAGTGGTATATTTTGGCTCAATA 57.005 30.769 0.00 0.00 0.00 1.90
301 305 7.902920 ATTCAGTGGTATATTTTGGCTCAAT 57.097 32.000 0.00 0.00 0.00 2.57
302 306 7.716799 AATTCAGTGGTATATTTTGGCTCAA 57.283 32.000 0.00 0.00 0.00 3.02
303 307 8.849168 CATAATTCAGTGGTATATTTTGGCTCA 58.151 33.333 0.00 0.00 0.00 4.26
304 308 8.850156 ACATAATTCAGTGGTATATTTTGGCTC 58.150 33.333 0.00 0.00 0.00 4.70
305 309 8.632679 CACATAATTCAGTGGTATATTTTGGCT 58.367 33.333 3.00 0.00 32.24 4.75
306 310 7.382218 GCACATAATTCAGTGGTATATTTTGGC 59.618 37.037 10.95 0.00 36.29 4.52
307 311 8.632679 AGCACATAATTCAGTGGTATATTTTGG 58.367 33.333 11.72 0.00 43.83 3.28
393 397 3.026707 TCATCGTACTCCATCCCTTCA 57.973 47.619 0.00 0.00 0.00 3.02
394 398 4.767928 AGTATCATCGTACTCCATCCCTTC 59.232 45.833 0.00 0.00 28.99 3.46
397 401 5.254901 AGTAGTATCATCGTACTCCATCCC 58.745 45.833 0.00 0.00 36.39 3.85
412 416 6.933521 TCCGTGGAGTACAATAGAGTAGTATC 59.066 42.308 0.00 0.00 0.00 2.24
413 417 6.835174 TCCGTGGAGTACAATAGAGTAGTAT 58.165 40.000 0.00 0.00 0.00 2.12
414 418 6.239217 TCCGTGGAGTACAATAGAGTAGTA 57.761 41.667 0.00 0.00 0.00 1.82
425 429 3.973206 ACAATTGATCCGTGGAGTACA 57.027 42.857 13.59 0.00 0.00 2.90
426 430 4.098960 TCCTACAATTGATCCGTGGAGTAC 59.901 45.833 13.59 0.00 0.00 2.73
478 482 8.637281 ACGTAATACAAATCGTATGTCATCAA 57.363 30.769 0.00 0.00 40.04 2.57
488 492 6.542574 TTCAACCAACGTAATACAAATCGT 57.457 33.333 0.00 0.00 38.15 3.73
490 494 8.736751 ACAATTCAACCAACGTAATACAAATC 57.263 30.769 0.00 0.00 0.00 2.17
491 495 9.615295 GTACAATTCAACCAACGTAATACAAAT 57.385 29.630 0.00 0.00 0.00 2.32
493 497 8.151141 TGTACAATTCAACCAACGTAATACAA 57.849 30.769 0.00 0.00 0.00 2.41
494 498 7.725818 TGTACAATTCAACCAACGTAATACA 57.274 32.000 0.00 0.00 0.00 2.29
495 499 7.694784 CCATGTACAATTCAACCAACGTAATAC 59.305 37.037 0.00 0.00 0.00 1.89
496 500 7.148222 CCCATGTACAATTCAACCAACGTAATA 60.148 37.037 0.00 0.00 0.00 0.98
497 501 6.349777 CCCATGTACAATTCAACCAACGTAAT 60.350 38.462 0.00 0.00 0.00 1.89
500 504 3.254657 CCCATGTACAATTCAACCAACGT 59.745 43.478 0.00 0.00 0.00 3.99
501 505 3.832276 CCCATGTACAATTCAACCAACG 58.168 45.455 0.00 0.00 0.00 4.10
502 506 3.584834 GCCCATGTACAATTCAACCAAC 58.415 45.455 0.00 0.00 0.00 3.77
503 507 2.564947 GGCCCATGTACAATTCAACCAA 59.435 45.455 0.00 0.00 0.00 3.67
504 508 2.175202 GGCCCATGTACAATTCAACCA 58.825 47.619 0.00 0.00 0.00 3.67
505 509 2.456577 AGGCCCATGTACAATTCAACC 58.543 47.619 0.00 0.00 0.00 3.77
508 512 3.737559 AGAAGGCCCATGTACAATTCA 57.262 42.857 0.00 0.00 0.00 2.57
509 513 7.522236 GCTTTATAGAAGGCCCATGTACAATTC 60.522 40.741 0.00 0.00 31.62 2.17
511 515 5.770162 GCTTTATAGAAGGCCCATGTACAAT 59.230 40.000 0.00 0.00 31.62 2.71
512 516 5.130350 GCTTTATAGAAGGCCCATGTACAA 58.870 41.667 0.00 0.00 31.62 2.41
514 518 3.746492 CGCTTTATAGAAGGCCCATGTAC 59.254 47.826 0.00 0.00 34.23 2.90
516 520 2.438021 TCGCTTTATAGAAGGCCCATGT 59.562 45.455 0.00 0.00 34.23 3.21
517 521 3.126001 TCGCTTTATAGAAGGCCCATG 57.874 47.619 0.00 0.00 34.23 3.66
518 522 3.857157 TTCGCTTTATAGAAGGCCCAT 57.143 42.857 0.00 0.00 34.23 4.00
519 523 3.637911 TTTCGCTTTATAGAAGGCCCA 57.362 42.857 0.00 0.00 34.23 5.36
520 524 4.638865 TCTTTTTCGCTTTATAGAAGGCCC 59.361 41.667 0.00 0.00 34.23 5.80
521 525 5.813080 TCTTTTTCGCTTTATAGAAGGCC 57.187 39.130 0.00 0.00 34.23 5.19
522 526 6.747739 CCTTTCTTTTTCGCTTTATAGAAGGC 59.252 38.462 0.00 0.00 34.41 4.35
523 527 8.040716 TCCTTTCTTTTTCGCTTTATAGAAGG 57.959 34.615 0.00 0.00 0.00 3.46
529 533 9.010029 TCAGTATTCCTTTCTTTTTCGCTTTAT 57.990 29.630 0.00 0.00 0.00 1.40
530 534 8.385898 TCAGTATTCCTTTCTTTTTCGCTTTA 57.614 30.769 0.00 0.00 0.00 1.85
531 535 7.272037 TCAGTATTCCTTTCTTTTTCGCTTT 57.728 32.000 0.00 0.00 0.00 3.51
534 538 5.089411 GCTCAGTATTCCTTTCTTTTTCGC 58.911 41.667 0.00 0.00 0.00 4.70
535 539 6.487689 AGCTCAGTATTCCTTTCTTTTTCG 57.512 37.500 0.00 0.00 0.00 3.46
536 540 8.105097 AGAAGCTCAGTATTCCTTTCTTTTTC 57.895 34.615 0.00 0.00 0.00 2.29
538 542 7.457561 AGAGAAGCTCAGTATTCCTTTCTTTT 58.542 34.615 0.00 0.00 32.06 2.27
541 545 6.895204 ACTAGAGAAGCTCAGTATTCCTTTCT 59.105 38.462 0.00 0.00 32.06 2.52
545 549 7.398904 AGAAAACTAGAGAAGCTCAGTATTCCT 59.601 37.037 0.00 0.00 32.06 3.36
546 550 7.552459 AGAAAACTAGAGAAGCTCAGTATTCC 58.448 38.462 0.00 0.00 32.06 3.01
551 555 9.863845 GTTTATAGAAAACTAGAGAAGCTCAGT 57.136 33.333 0.00 0.00 32.06 3.41
552 556 9.308318 GGTTTATAGAAAACTAGAGAAGCTCAG 57.692 37.037 0.00 0.00 28.96 3.35
553 557 8.812972 TGGTTTATAGAAAACTAGAGAAGCTCA 58.187 33.333 0.00 0.00 33.06 4.26
554 558 9.308318 CTGGTTTATAGAAAACTAGAGAAGCTC 57.692 37.037 7.90 0.00 39.97 4.09
555 559 9.036980 TCTGGTTTATAGAAAACTAGAGAAGCT 57.963 33.333 11.25 0.00 40.98 3.74
566 570 8.031277 GGACGTCTAACTCTGGTTTATAGAAAA 58.969 37.037 16.46 0.00 36.92 2.29
568 572 6.888632 AGGACGTCTAACTCTGGTTTATAGAA 59.111 38.462 16.46 0.00 36.92 2.10
569 573 6.421485 AGGACGTCTAACTCTGGTTTATAGA 58.579 40.000 16.46 0.00 36.92 1.98
570 574 6.696441 AGGACGTCTAACTCTGGTTTATAG 57.304 41.667 16.46 0.00 36.92 1.31
571 575 7.281774 CAGTAGGACGTCTAACTCTGGTTTATA 59.718 40.741 16.46 0.00 36.92 0.98
572 576 6.095160 CAGTAGGACGTCTAACTCTGGTTTAT 59.905 42.308 16.46 0.00 36.92 1.40
573 577 5.413833 CAGTAGGACGTCTAACTCTGGTTTA 59.586 44.000 16.46 0.00 36.92 2.01
574 578 4.217983 CAGTAGGACGTCTAACTCTGGTTT 59.782 45.833 16.46 0.00 36.92 3.27
575 579 3.757493 CAGTAGGACGTCTAACTCTGGTT 59.243 47.826 16.46 0.00 39.26 3.67
576 580 3.345414 CAGTAGGACGTCTAACTCTGGT 58.655 50.000 16.46 0.00 0.00 4.00
577 581 2.683867 CCAGTAGGACGTCTAACTCTGG 59.316 54.545 16.46 19.40 35.08 3.86
578 582 3.607741 TCCAGTAGGACGTCTAACTCTG 58.392 50.000 16.46 15.21 39.61 3.35
579 583 3.996921 TCCAGTAGGACGTCTAACTCT 57.003 47.619 16.46 6.01 39.61 3.24
590 594 3.791320 AGGAATGAGTTGTCCAGTAGGA 58.209 45.455 0.00 0.00 43.21 2.94
591 595 5.187967 ACTTAGGAATGAGTTGTCCAGTAGG 59.812 44.000 0.00 0.00 36.28 3.18
592 596 6.102663 CACTTAGGAATGAGTTGTCCAGTAG 58.897 44.000 0.00 0.00 36.28 2.57
593 597 5.542635 ACACTTAGGAATGAGTTGTCCAGTA 59.457 40.000 0.00 0.00 36.28 2.74
594 598 4.348168 ACACTTAGGAATGAGTTGTCCAGT 59.652 41.667 0.00 0.00 36.28 4.00
595 599 4.692625 CACACTTAGGAATGAGTTGTCCAG 59.307 45.833 0.00 0.00 36.28 3.86
596 600 4.102524 ACACACTTAGGAATGAGTTGTCCA 59.897 41.667 0.00 0.00 36.28 4.02
597 601 4.642429 ACACACTTAGGAATGAGTTGTCC 58.358 43.478 0.00 0.00 0.00 4.02
639 643 1.227853 GCTCAAGTGGACAACCGGT 60.228 57.895 0.00 0.00 39.42 5.28
641 645 2.386661 ATAGCTCAAGTGGACAACCG 57.613 50.000 0.00 0.00 39.42 4.44
652 656 6.772233 TGCTAGCCATCAAATTAATAGCTCAA 59.228 34.615 13.29 0.00 36.12 3.02
724 967 3.366724 TGCAGTCAAAATAACGCGTAGAG 59.633 43.478 14.46 0.00 0.00 2.43
759 1002 2.795231 ACAAGGACCTGGTGATCATG 57.205 50.000 2.82 0.00 0.00 3.07
768 1011 2.100749 GTCCAACCAAAACAAGGACCTG 59.899 50.000 0.00 0.00 42.21 4.00
769 1012 2.291930 TGTCCAACCAAAACAAGGACCT 60.292 45.455 7.37 0.00 46.29 3.85
879 1124 4.109675 AAATCGGAGGGGGTGGCG 62.110 66.667 0.00 0.00 0.00 5.69
880 1125 2.124278 GAAATCGGAGGGGGTGGC 60.124 66.667 0.00 0.00 0.00 5.01
882 1127 4.634012 TTATATGAAATCGGAGGGGGTG 57.366 45.455 0.00 0.00 0.00 4.61
883 1128 4.849810 TCATTATATGAAATCGGAGGGGGT 59.150 41.667 0.00 0.00 36.11 4.95
930 1175 7.304905 GGTGTTTCGTTTTGTTTTTGTTGTTTG 60.305 33.333 0.00 0.00 0.00 2.93
931 1176 6.687531 GGTGTTTCGTTTTGTTTTTGTTGTTT 59.312 30.769 0.00 0.00 0.00 2.83
937 1182 6.216750 TGAAGGTGTTTCGTTTTGTTTTTG 57.783 33.333 0.00 0.00 38.71 2.44
938 1183 6.128418 CCATGAAGGTGTTTCGTTTTGTTTTT 60.128 34.615 0.00 0.00 38.71 1.94
939 1184 5.350091 CCATGAAGGTGTTTCGTTTTGTTTT 59.650 36.000 0.00 0.00 38.71 2.43
940 1185 4.867608 CCATGAAGGTGTTTCGTTTTGTTT 59.132 37.500 0.00 0.00 38.71 2.83
941 1186 4.429108 CCATGAAGGTGTTTCGTTTTGTT 58.571 39.130 0.00 0.00 38.71 2.83
946 1191 0.958822 GGCCATGAAGGTGTTTCGTT 59.041 50.000 0.00 0.00 38.71 3.85
949 1194 0.893727 ACGGGCCATGAAGGTGTTTC 60.894 55.000 4.39 0.00 40.61 2.78
959 1204 5.240623 ACACAATATTTATACACGGGCCATG 59.759 40.000 4.39 0.00 0.00 3.66
1007 1252 5.127519 AGAGAGAGAGGAGATGATTTGTGTG 59.872 44.000 0.00 0.00 0.00 3.82
1024 1269 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1025 1270 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1208 1780 2.753989 TGCATGCGTAATATGTGTGC 57.246 45.000 14.09 4.92 0.00 4.57
1284 1917 8.446273 CAACAGTGAACTAATTAACAGATGAGG 58.554 37.037 0.00 0.00 0.00 3.86
1337 1971 6.672266 TCAGGTTGAACTCTCAGTATCTTT 57.328 37.500 0.00 0.00 31.69 2.52
1464 2098 3.788116 TCATGAGAGGGGTAAAGGGTA 57.212 47.619 0.00 0.00 0.00 3.69
1468 2102 6.886459 TCAAAAGAATCATGAGAGGGGTAAAG 59.114 38.462 0.09 0.00 0.00 1.85
1469 2103 6.789268 TCAAAAGAATCATGAGAGGGGTAAA 58.211 36.000 0.09 0.00 0.00 2.01
1471 2105 6.409695 GGATCAAAAGAATCATGAGAGGGGTA 60.410 42.308 0.09 0.00 0.00 3.69
1472 2106 4.934797 TCAAAAGAATCATGAGAGGGGT 57.065 40.909 0.09 0.00 0.00 4.95
1473 2107 4.826183 GGATCAAAAGAATCATGAGAGGGG 59.174 45.833 0.09 0.00 0.00 4.79
1505 2144 5.105752 AGAAATTAGTCAGCGCTAACTCTG 58.894 41.667 18.63 0.00 34.25 3.35
1512 2151 8.768955 CATATAGAAAAGAAATTAGTCAGCGCT 58.231 33.333 2.64 2.64 0.00 5.92
1514 2153 7.737744 CGCATATAGAAAAGAAATTAGTCAGCG 59.262 37.037 0.00 0.00 0.00 5.18
1520 2159 7.800380 CACCTGCGCATATAGAAAAGAAATTAG 59.200 37.037 12.24 0.00 0.00 1.73
1559 2228 1.078848 CCCTCAGAAGCCCGAACAG 60.079 63.158 0.00 0.00 0.00 3.16
1676 2345 3.003173 CACCCGGAGCTCCCTCAA 61.003 66.667 27.20 0.00 39.96 3.02
1829 2503 2.167662 TCTGAGACCATTCACTGCGTA 58.832 47.619 0.00 0.00 0.00 4.42
1831 2505 1.998315 CTTCTGAGACCATTCACTGCG 59.002 52.381 0.00 0.00 0.00 5.18
1832 2506 3.325293 TCTTCTGAGACCATTCACTGC 57.675 47.619 0.00 0.00 0.00 4.40
1833 2507 4.450419 GTGTTCTTCTGAGACCATTCACTG 59.550 45.833 0.00 0.00 0.00 3.66
1834 2508 4.346418 AGTGTTCTTCTGAGACCATTCACT 59.654 41.667 0.00 0.00 0.00 3.41
1856 3070 0.166597 CATACCTGCACGCACACAAG 59.833 55.000 0.00 0.00 0.00 3.16
2073 3343 3.940852 CACATAAGCTGCACCAACTCATA 59.059 43.478 1.02 0.00 0.00 2.15
2456 3760 3.117888 AGGCAGAGAAAGGACAAGAAACA 60.118 43.478 0.00 0.00 0.00 2.83
2457 3761 3.481453 AGGCAGAGAAAGGACAAGAAAC 58.519 45.455 0.00 0.00 0.00 2.78
2458 3762 3.496870 GGAGGCAGAGAAAGGACAAGAAA 60.497 47.826 0.00 0.00 0.00 2.52
2459 3763 2.039084 GGAGGCAGAGAAAGGACAAGAA 59.961 50.000 0.00 0.00 0.00 2.52
2460 3764 1.625818 GGAGGCAGAGAAAGGACAAGA 59.374 52.381 0.00 0.00 0.00 3.02
2461 3765 1.349026 TGGAGGCAGAGAAAGGACAAG 59.651 52.381 0.00 0.00 0.00 3.16
2462 3766 1.434188 TGGAGGCAGAGAAAGGACAA 58.566 50.000 0.00 0.00 0.00 3.18
2463 3767 1.434188 TTGGAGGCAGAGAAAGGACA 58.566 50.000 0.00 0.00 0.00 4.02
2464 3768 2.568623 TTTGGAGGCAGAGAAAGGAC 57.431 50.000 0.00 0.00 0.00 3.85
2465 3769 3.814504 AATTTGGAGGCAGAGAAAGGA 57.185 42.857 0.00 0.00 0.00 3.36
2466 3770 5.256474 TCTAAATTTGGAGGCAGAGAAAGG 58.744 41.667 0.00 0.00 0.00 3.11
2467 3771 5.942826 ACTCTAAATTTGGAGGCAGAGAAAG 59.057 40.000 28.61 7.35 39.77 2.62
2468 3772 5.707298 CACTCTAAATTTGGAGGCAGAGAAA 59.293 40.000 28.61 0.00 39.77 2.52
2469 3773 5.248640 CACTCTAAATTTGGAGGCAGAGAA 58.751 41.667 28.61 0.00 39.77 2.87
2470 3774 4.836825 CACTCTAAATTTGGAGGCAGAGA 58.163 43.478 28.61 9.13 39.77 3.10
2471 3775 3.376546 GCACTCTAAATTTGGAGGCAGAG 59.623 47.826 28.61 19.61 39.77 3.35
2472 3776 3.244875 TGCACTCTAAATTTGGAGGCAGA 60.245 43.478 27.70 16.00 39.77 4.26
2473 3777 3.084039 TGCACTCTAAATTTGGAGGCAG 58.916 45.455 27.70 20.84 39.77 4.85
2474 3778 3.153369 TGCACTCTAAATTTGGAGGCA 57.847 42.857 27.70 27.70 39.77 4.75
2475 3779 4.676546 GATTGCACTCTAAATTTGGAGGC 58.323 43.478 28.61 26.46 39.77 4.70
2476 3780 4.396166 ACGATTGCACTCTAAATTTGGAGG 59.604 41.667 28.61 20.14 39.77 4.30
2477 3781 5.352569 AGACGATTGCACTCTAAATTTGGAG 59.647 40.000 25.12 25.12 41.07 3.86
2478 3782 5.245531 AGACGATTGCACTCTAAATTTGGA 58.754 37.500 4.04 4.04 0.00 3.53
2479 3783 5.551760 AGACGATTGCACTCTAAATTTGG 57.448 39.130 0.00 0.00 0.00 3.28
2480 3784 7.743104 AGTAAGACGATTGCACTCTAAATTTG 58.257 34.615 0.00 0.00 0.00 2.32
2481 3785 7.819900 AGAGTAAGACGATTGCACTCTAAATTT 59.180 33.333 2.32 0.00 43.09 1.82
2482 3786 7.276658 CAGAGTAAGACGATTGCACTCTAAATT 59.723 37.037 2.32 0.00 43.05 1.82
2488 3792 3.839293 ACAGAGTAAGACGATTGCACTC 58.161 45.455 0.00 0.00 36.67 3.51
2500 3804 3.921119 TGGCATTTGCAACAGAGTAAG 57.079 42.857 0.00 0.00 44.36 2.34
2504 3808 3.719924 TCTTTTGGCATTTGCAACAGAG 58.280 40.909 0.00 0.00 44.36 3.35
2719 4035 5.515797 TCATCTTACTGTACGGATTCCTG 57.484 43.478 9.17 0.72 0.00 3.86
2728 4044 6.290437 CGTCGTCGAAATTCATCTTACTGTAC 60.290 42.308 0.00 0.00 39.71 2.90
2747 4100 1.144969 TTGCTTTCACCATCGTCGTC 58.855 50.000 0.00 0.00 0.00 4.20
2754 4107 2.627699 ACCAAACGATTGCTTTCACCAT 59.372 40.909 0.00 0.00 35.10 3.55
2762 4115 2.279935 TACCCAACCAAACGATTGCT 57.720 45.000 0.00 0.00 35.10 3.91
2792 4145 2.421314 CATGTCGCCGGGCATCTA 59.579 61.111 20.71 2.08 0.00 1.98
2873 4226 1.300931 CGTGTGGCTCGGGATATGG 60.301 63.158 0.00 0.00 0.00 2.74
2876 4229 3.071837 TGCGTGTGGCTCGGGATA 61.072 61.111 0.00 0.00 44.05 2.59
3046 4399 3.587061 TCATAAAGAGGTGGAAGGAAGCA 59.413 43.478 0.00 0.00 0.00 3.91
3183 4536 2.223711 ACCGCACAAGATTTCAACCAAC 60.224 45.455 0.00 0.00 0.00 3.77
3184 4537 2.028130 ACCGCACAAGATTTCAACCAA 58.972 42.857 0.00 0.00 0.00 3.67
3185 4538 1.686355 ACCGCACAAGATTTCAACCA 58.314 45.000 0.00 0.00 0.00 3.67
3222 4611 6.046593 GTCGTGTCATCTTAATTATGTGGGA 58.953 40.000 0.00 0.00 0.00 4.37
3224 4613 7.539712 AAGTCGTGTCATCTTAATTATGTGG 57.460 36.000 0.00 0.00 0.00 4.17
3231 4620 9.825972 CAACAATAAAAGTCGTGTCATCTTAAT 57.174 29.630 0.00 0.00 0.00 1.40
3232 4621 8.832521 ACAACAATAAAAGTCGTGTCATCTTAA 58.167 29.630 0.00 0.00 0.00 1.85
3257 4646 6.292703 GGTGCATCACGAACCTATAACAATAC 60.293 42.308 0.00 0.00 34.83 1.89
3347 4736 1.556911 CTGGTCATGGTGAGCCTTAGT 59.443 52.381 6.68 0.00 43.72 2.24
3350 4739 1.001641 GCTGGTCATGGTGAGCCTT 60.002 57.895 6.68 0.00 43.72 4.35
3422 4811 1.913419 GGGATGTGGACCCTGTAGAAA 59.087 52.381 0.00 0.00 43.65 2.52
3505 4895 8.006027 GGGAGCAACGTACGATTATTTAATTAC 58.994 37.037 24.41 0.00 0.00 1.89
3654 5057 4.635765 GGCAATACAACATGAGCTAGAACA 59.364 41.667 0.00 0.00 0.00 3.18
3660 5063 3.077484 ACTGGCAATACAACATGAGCT 57.923 42.857 0.00 0.00 0.00 4.09
3724 5132 8.773404 ACAATCAATACTAGTCAAGGTACAAC 57.227 34.615 0.00 0.00 0.00 3.32
3816 5227 3.059868 CGTTTTGAACTGAGAAGCGCTTA 60.060 43.478 25.11 6.80 0.00 3.09
3843 5254 5.751243 ACACAAATATTAGTCGATTGGGC 57.249 39.130 0.00 0.00 0.00 5.36
3917 5328 1.003839 GACCTGGTTCATGGACGCA 60.004 57.895 0.00 0.00 0.00 5.24
3920 5331 3.316308 GCATAATGACCTGGTTCATGGAC 59.684 47.826 0.00 0.00 36.31 4.02
3937 5348 6.432472 TGTTTTGGTGAGATGTGTATGCATAA 59.568 34.615 8.28 0.00 0.00 1.90
4091 5502 8.439286 GCTGCGGAAATTGTTTGATAAAATTTA 58.561 29.630 0.00 0.00 34.51 1.40
4123 5535 6.127619 GCAATATAAAATAGAGGATGCCCCAC 60.128 42.308 0.00 0.00 37.41 4.61
4193 5605 1.969923 TGATGGGTTTTGGAAGGCTTG 59.030 47.619 3.46 0.00 0.00 4.01
4194 5606 2.250924 CTGATGGGTTTTGGAAGGCTT 58.749 47.619 0.00 0.00 0.00 4.35
4195 5607 1.550869 CCTGATGGGTTTTGGAAGGCT 60.551 52.381 0.00 0.00 0.00 4.58
4197 5609 0.897621 GCCTGATGGGTTTTGGAAGG 59.102 55.000 0.00 0.00 37.43 3.46
4199 5611 0.486879 AGGCCTGATGGGTTTTGGAA 59.513 50.000 3.11 0.00 37.43 3.53
4200 5612 0.486879 AAGGCCTGATGGGTTTTGGA 59.513 50.000 5.69 0.00 37.43 3.53
4201 5613 2.102578 CTAAGGCCTGATGGGTTTTGG 58.897 52.381 5.69 0.00 37.43 3.28
4203 5615 2.291605 GGACTAAGGCCTGATGGGTTTT 60.292 50.000 5.69 0.00 37.43 2.43
4204 5616 1.285078 GGACTAAGGCCTGATGGGTTT 59.715 52.381 5.69 0.00 37.43 3.27
4205 5617 0.919710 GGACTAAGGCCTGATGGGTT 59.080 55.000 5.69 0.00 37.43 4.11
4206 5618 0.988678 GGGACTAAGGCCTGATGGGT 60.989 60.000 5.69 0.37 37.43 4.51
4208 5620 1.338136 ACGGGACTAAGGCCTGATGG 61.338 60.000 5.69 0.00 35.69 3.51
4209 5621 0.541863 AACGGGACTAAGGCCTGATG 59.458 55.000 5.69 1.51 35.69 3.07
4210 5622 0.831307 GAACGGGACTAAGGCCTGAT 59.169 55.000 5.69 0.00 35.69 2.90
4211 5623 1.262640 GGAACGGGACTAAGGCCTGA 61.263 60.000 5.69 0.00 35.69 3.86
4212 5624 1.221021 GGAACGGGACTAAGGCCTG 59.779 63.158 5.69 0.00 37.80 4.85
4213 5625 0.546988 AAGGAACGGGACTAAGGCCT 60.547 55.000 0.00 0.00 0.00 5.19
4214 5626 1.197812 TAAGGAACGGGACTAAGGCC 58.802 55.000 0.00 0.00 0.00 5.19
4215 5627 4.677673 TTATAAGGAACGGGACTAAGGC 57.322 45.455 0.00 0.00 0.00 4.35
4216 5628 5.055144 GCTTTATAAGGAACGGGACTAAGG 58.945 45.833 0.00 0.00 0.00 2.69
4217 5629 5.055144 GGCTTTATAAGGAACGGGACTAAG 58.945 45.833 0.00 0.00 0.00 2.18
4218 5630 4.141642 GGGCTTTATAAGGAACGGGACTAA 60.142 45.833 0.00 0.00 0.00 2.24
4219 5631 3.389002 GGGCTTTATAAGGAACGGGACTA 59.611 47.826 0.00 0.00 0.00 2.59
4220 5632 2.172082 GGGCTTTATAAGGAACGGGACT 59.828 50.000 0.00 0.00 0.00 3.85
4221 5633 2.092807 TGGGCTTTATAAGGAACGGGAC 60.093 50.000 0.00 0.00 0.00 4.46
4222 5634 2.198336 TGGGCTTTATAAGGAACGGGA 58.802 47.619 0.00 0.00 0.00 5.14
4223 5635 2.721425 TGGGCTTTATAAGGAACGGG 57.279 50.000 0.00 0.00 0.00 5.28
4224 5636 3.146847 GGATGGGCTTTATAAGGAACGG 58.853 50.000 0.00 0.00 0.00 4.44
4225 5637 2.806244 CGGATGGGCTTTATAAGGAACG 59.194 50.000 0.00 0.00 0.00 3.95
4226 5638 3.813724 GACGGATGGGCTTTATAAGGAAC 59.186 47.826 0.00 0.00 0.00 3.62
4227 5639 3.456644 TGACGGATGGGCTTTATAAGGAA 59.543 43.478 0.00 0.00 0.00 3.36
4228 5640 3.042682 TGACGGATGGGCTTTATAAGGA 58.957 45.455 0.00 0.00 0.00 3.36
4229 5641 3.403038 CTGACGGATGGGCTTTATAAGG 58.597 50.000 0.00 0.00 0.00 2.69
4230 5642 3.403038 CCTGACGGATGGGCTTTATAAG 58.597 50.000 0.00 0.00 0.00 1.73
4231 5643 2.486548 GCCTGACGGATGGGCTTTATAA 60.487 50.000 0.00 0.00 42.31 0.98
4232 5644 1.071699 GCCTGACGGATGGGCTTTATA 59.928 52.381 0.00 0.00 42.31 0.98
4233 5645 0.179018 GCCTGACGGATGGGCTTTAT 60.179 55.000 0.00 0.00 42.31 1.40
4234 5646 1.223487 GCCTGACGGATGGGCTTTA 59.777 57.895 0.00 0.00 42.31 1.85
4235 5647 2.044946 GCCTGACGGATGGGCTTT 60.045 61.111 0.00 0.00 42.31 3.51
4236 5648 4.115199 GGCCTGACGGATGGGCTT 62.115 66.667 0.00 0.00 44.70 4.35
4239 5651 3.142393 CTAGGCCTGACGGATGGG 58.858 66.667 17.99 0.00 0.00 4.00
4240 5652 2.423446 GCTAGGCCTGACGGATGG 59.577 66.667 17.99 0.00 0.00 3.51
4241 5653 2.423446 GGCTAGGCCTGACGGATG 59.577 66.667 17.99 0.00 46.69 3.51
4251 5663 0.106894 AACTCGCTATTGGGCTAGGC 59.893 55.000 8.00 8.00 30.65 3.93
4290 5702 9.675464 AATTTACCGAATTAACTGGAGTATCAA 57.325 29.630 0.00 0.00 36.20 2.57
4291 5703 9.675464 AAATTTACCGAATTAACTGGAGTATCA 57.325 29.630 0.00 0.00 36.96 2.15
4461 5874 6.774354 TTCGTGTCAACTTTGATTAGTACC 57.226 37.500 0.00 0.00 39.73 3.34
4488 5901 7.572759 TGACGTGAAATTGTCTAGTCAAATTC 58.427 34.615 18.11 18.11 39.03 2.17
4577 5990 4.890088 ACAGCGTTGTTTTCCTAGTATGA 58.110 39.130 0.00 0.00 32.28 2.15
4604 6021 4.014406 TCTGTTGATGATGCTGAATTGCT 58.986 39.130 0.00 0.00 0.00 3.91
4605 6022 4.365899 TCTGTTGATGATGCTGAATTGC 57.634 40.909 0.00 0.00 0.00 3.56
4606 6023 6.643360 TGTTTTCTGTTGATGATGCTGAATTG 59.357 34.615 0.00 0.00 0.00 2.32
4607 6024 6.751157 TGTTTTCTGTTGATGATGCTGAATT 58.249 32.000 0.00 0.00 0.00 2.17
4608 6025 6.208007 TCTGTTTTCTGTTGATGATGCTGAAT 59.792 34.615 0.00 0.00 0.00 2.57
4609 6026 5.532032 TCTGTTTTCTGTTGATGATGCTGAA 59.468 36.000 0.00 0.00 0.00 3.02
4610 6027 5.065235 TCTGTTTTCTGTTGATGATGCTGA 58.935 37.500 0.00 0.00 0.00 4.26
4611 6028 5.366829 TCTGTTTTCTGTTGATGATGCTG 57.633 39.130 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.